ID:

dps_1389

 Coordinate:

4_group1:3077064-3077214 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-37.6 -37.6 -37.4

Flybase annnotation

CDS [Dpse\GA25428-cds]; exon [dpse_GLEANR_16988:4]; intron [Dpse\GA25428-in]

Repeatable elements

NameClassFamilyStrand
P_DGDNAP+
Helitron-1N1_DVirRCHelitron+
mature
  1. Unknown_group_170:18524-18548 +
  2. Unknown_group_98:30689-30713 +
  3. Unknown_group_147:17905-17929 +
  4. XL_group1e:9275451-9275475 +
  5. Unknown_group_31:23211-23235 +
  6. 3:140357-140381 +
  7. 3:6319800-6319824 +
  8. 2:17462241-17462265 +
  9. 2:18177352-18177376 +
  10. 2:23806995-23807019 +
  11. 2:30312337-30312361 +
  12. Unknown_group_374:1448-1472 +
  13. dps_1388  4_group1:3069647-3069671 +
  14. dps_1389  4_group1:3077179-3077203 +
  15. Unknown_group_486:2214-2238 +
  16. XL_group1a:1305475-1305499 +
  17. XL_group1a:5323834-5323858 +
  18. Unknown_singleton_1066:1862-1886 +
  19. Unknown_group_418:4461-4485 +
  20. Unknown_singleton_2989:962-986 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCGAAGATGATCAAAATGATAATAGACATCGCAAGCCGAGTAAAGTAAAAGTAAGAAAAGCTCGAAAAACCGAGGTTTTATATTACATGCGATTTCATTCTTATATTTTTACATTTTTAAAATATTATTGTACCCGATACTCTAAATGAGTTTGGGTAAAAATGGATGTGTGTAACGTCCAGAAGGAATCATTTCCGACCCCATAATGTGTATACATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGT
**************************************************((((.((((.((((......)))).))))...))))....((((((.(((..(((((((.........))))))).....(((((((.((((.....)))))))))))....(((((((.....))))))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M062
head
 V112
male body		 M059
embryo
 SRR902011
testis
 GSM343916
embryo
............................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCG....... 24 0 20 8.45 169 169 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCG....... 21 0 20 1.60 32 32 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGT......... 24 0 20 1.05 21 21 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTC........ 24 0 20 0.90 18 0 18 0 0 0 0 0
.....................................................................................................................................................................ATGTGTGTAACGTCCAGAAGGAATC............................................................. 25 0 20 0.55 11 11 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT..... 27 0 20 0.35 7 0 7 0 0 0 0 0
.........................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCC............. 21 0 20 0.30 6 6 0 0 0 0 0 0
..............................................................................................................................................TAATTGCGTTTGGGTAAAA.......................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................TGCATACATTCTTGATCAG........................ 19 1 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGT 19 0 20 0.20 4 3 0 0 1 0 0 0
...........................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGT......... 23 0 20 0.15 3 0 0 3 0 0 0 0
..........................................................................................................................................................GGTAAAAATGGATGTGTGTAA............................................................................ 21 0 9 0.11 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................GAAGGAATCATTTCGGACCCCATA.............................................. 24 1 10 0.10 1 0 0 0 0 1 0 0
............................................................................................................................................................TAAAAATGGATGTGTGTAACG.......................................................................... 21 0 10 0.10 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................GAAGGAATCATTTCCGACCCCAT............................................... 23 0 10 0.10 1 1 0 0 0 0 0 0
...............................................................................................................................................................................CGTCCAGAAGGAATCATTTCCGACCC.................................................. 26 0 11 0.09 1 0 0 0 0 1 0 0
.....................................................................................................................................................................................GAAGGAATCATTTCCGACCCCA................................................ 22 0 11 0.09 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................GAAGGAATCATTTCCGACCCC................................................. 21 0 12 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................................................AAGGAATCATTTCCGACCCC................................................. 20 0 12 0.08 1 1 0 0 0 0 0 0
.............................................................................................................................................TTAATTGCGTTTGGGTAAAAA......................................................................................... 21 3 14 0.07 1 1 0 0 0 0 0 0
.....................................................................................................................................................................ATGTGTGTAACGTCCAGAGGGAATCAT........................................................... 27 1 15 0.07 1 0 0 0 1 0 0 0
....................................................................................................................................................................................................................TACATTCTTGATCAGCATCAA.................. 21 0 17 0.06 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAGT 28 0 18 0.06 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATGGCCGGGTCGATTGAGT 19 2 20 0.05 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTGATCAGCATCAATAGC.............. 18 0 20 0.05 1 0 0 1 0 0 0 0
.....................................................................................................................................................................ATGTGTGTAACGTCCAGAAGG................................................................. 21 0 20 0.05 1 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGT 22 0 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATGGCCGAGTCGATTGAGT 19 1 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCATGCTTGATCAGCATCAATAGCCGAGT......... 29 2 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCC............. 22 0 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

AGCTTCTACTAGTTTTACTATTATCTGTAGCGTTCGGCTCATTTCATTTTCATTCTTTTCGAGCTTTTTGGCTCCAAAATATAATGTACGCTAAAGTAAGAATATAAAAATGTAAAAATTTTATAATAACATGGGCTATGAGATTTACTCAAACCCATTTTTACCTACACACATTGCAGGTCTTCCTTAGTAAAGGCTGGGGTATTACACATATGTAAGAACTAGTCGTAGTTATCGGCTCAGCTAACTCA
**************************************************((((.((((.((((......)))).))))...))))....((((((.(((..(((((((.........))))))).....(((((((.((((.....)))))))))))....(((((((.....))))))))))))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 GSM343916
embryo
 SRR902010
ovaries
 GSM444067
head
 M059
embryo
...................................................................................................................................................................................GTCTTCCTTAGTAAAGGCTGGGGT................................................ 24 0 11 0.64 7 7 0 0 0 0 0
....................................................................................................................................................................................................................................TAGTTATCGGCTCAGCTAAC... 20 0 20 0.40 8 8 0 0 0 0 0
..........................................................................................CTAAAGTAGGAATGTAAGAAT............................................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0
.................................................................................................................................................................................................................CGTATGTAAGAACTAGTCGT...................... 20 1 3 0.33 1 1 0 0 0 0 0
...............................................................................................................................................................TTTACCTACACACATTGCAGGTCTTCCT................................................................ 28 0 20 0.30 6 6 0 0 0 0 0
...................................................................................................................................................................................GTCTTCCTTAGTAAAGGCTGGGGTAT.............................................. 26 0 10 0.30 3 3 0 0 0 0 0
..............................................................................................................................................................................TGCAGGTCTTCCTTAGTAAAGGCTGGGG................................................. 28 0 11 0.27 3 0 3 0 0 0 0
...................................................................................................................................................................................GTCTTCCTTAGTAAAGGCTGGGGTA............................................... 25 0 10 0.20 2 2 0 0 0 0 0
.....................................................................................................................................................................................................................................AGTTATCGGCTCAGCTA..... 17 0 20 0.15 3 0 0 0 3 0 0
......................ATCTGTTGCGTGCGGGTCA.................................................................................................................................................................................................................. 19 3 9 0.11 1 0 0 0 0 1 0
......................................................................................................................................................................................................................................GTTATCGGCTCAGCTAACT.. 19 0 20 0.10 2 0 2 0 0 0 0
.......................................................................................................................................................................................TCCTTAGTAAAGGCTGGGGTATT............................................. 23 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................................TCTTCCTTAGTAAAGGCTGGGGTAT.............................................. 25 0 10 0.10 1 1 0 0 0 0 0
....................................................................................................................................................................................TCTTCCTTAGTAAAGGCTGGGGTA............................................... 24 0 10 0.10 1 1 0 0 0 0 0
........................................................................................................................................................................................CCTTAGTAAAGGCTGGGGTAT.............................................. 21 0 10 0.10 1 1 0 0 0 0 0
........................................................................................................................................................................................CCTTAGTAAAGGCTGGGGTATT............................................. 22 0 10 0.10 1 1 0 0 0 0 0
.........................................................................................................................................................................................CTTAGTAAAGGCTGGGGTA............................................... 19 0 10 0.10 1 1 0 0 0 0 0
..................................................................................................................................................................................GGTCTTCCTTAGTAAAGGCTGGGGT................................................ 25 0 10 0.10 1 1 0 0 0 0 0
......................................................................................................................................................................................TTCCTTAGTAAAGGCTGGGGTAT.............................................. 23 0 10 0.10 1 1 0 0 0 0 0
.........................................................................................................................................................................................CTTAGTAAAGGCTGGGGT................................................ 18 0 11 0.09 1 1 0 0 0 0 0
..................................................................................................................................................................................GGTCTTCCTTAGTAAAGGCTG.................................................... 21 0 11 0.09 1 1 0 0 0 0 0
..............................................................................................................................................................................TGCAGGTCTTCCTTAGTAAAGGCT..................................................... 24 0 11 0.09 1 0 0 0 1 0 0
............................................................................................................................................................................................AGTAAAGGCTGGGGTATT............................................. 18 0 11 0.09 1 0 0 0 1 0 0
............................................................................................................................................................................ATTGCAGGTCTTCCTTAGTAAAGGCT..................................................... 26 0 11 0.09 1 1 0 0 0 0 0
...............................................................................................................................................................................GCAGGTCTTCCTTAGTAAAGGCT..................................................... 23 0 11 0.09 1 1 0 0 0 0 0
......................................................................................................................................................................................................................GTAAGAACTAGTCGTAGTTATCGGC............ 25 0 15 0.07 1 1 0 0 0 0 0
.......................................................................................................................................................................CACACATTGCAGGTCTTCCTTAGT............................................................ 24 0 15 0.07 1 0 0 0 0 0 1
....................................................................................................................................................................................ACTTCCTTAGTAAAGGCTGGGGTAT.............................................. 25 1 19 0.05 1 1 0 0 0 0 0
.......................................................................................................................................................................................ACCTTAGTAAAGGCTGGGGTAT.............................................. 22 1 19 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................AAAGTAAAGGCTGGGGTAT.............................................. 19 2 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................TTACCTACACACATTGCAGGTCTTCCTTA.............................................................. 29 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................ACACATTGCAGGTCTTCCTT............................................................... 20 0 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:3077014-3077264 + dps_1389 TCGAAGATGAT-CAAA--ATGATAAT--AGACATCGCAAG--------C----C----------------GA----------------------GT--------AAAGTAAAAGTAAG--------------------AAAA----------------------------GCTCGA-------AAAA--------------------------------------------------------------------------------------------------------------------CCGAGGTTTTATATT----------------ACATGC----GATT--------------------------------------------------------------------------------------------------------------------------TCATTCTTATATTTTTACATTTT--TAAAATATTATTGTACCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCATAATGTGTATACATTC---TTGATCAGCATCAATAGCCGAGTCGATTGAGT
droPer2 scaffold_5:2143744-2143994 - dpe_1753 TCGAAGATGAT-CAAA--ATGATAAT--AGACATCGCAAG--------C----C----------------GA----------------------GT--------AAAGTAAAAGTAAG--------------------AAAA----------------------------GCTCGA-------AAAA--------------------------------------------------------------------------------------------------------------------CCGAGGTTTTATATT----------------ACATGC----GATT--------------------------------------------------------------------------------------------------------------------------TCATTCTTATATTTTTACATTTT--TAAAATATTATTGTACCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCATAATGTGTATATATTC---TTGATCAGCATCAATAGCTGAGTCGATTGAGT
droWil2 scf2_1100000010776:592-841 - TCAAAAAGGA---AAA--ATGTTATT-------------G--------C----CAAGTATACT--------------------------------------------GCAAGGGTATA-------TAAAC----TTCG--G-CAT-------------------------------AGCCGAA-----------------------------------------G-----------------------T------TAG---------------------CTTCTTTGATATTTC---TATTTG------------------------------------C----AATT------------------------------T----------TTT---TTTTT-T-----------------------------TATAGACATTTCTGGTAGTTTTTTTATACCCTT--------------------------------------------------------GC------------AGAGGGTATTATAAAATTGGTC-------AGATGTTTGTAACGCAC--AGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCATGAGAAGCTAAGTCGATATAGC
droVir3 scaffold_13324:2258020-2258261 - TATGACAAAAT-AAAT--TTGGCTAT--GGATATT------------------T----------------A--A----ATAAAAGAGTTAAAAATT--------GTTAT--------------------------ATA-AT------------------------------------------GGAA--------------------------------------------------------------------------------------------------------------------CCTTGATCTCCTGTT----------------AGACGA----ACCC--------------------------------------------------------------------------------------------------------------------------TCATTT-----------------------------TTATACCCTGAACCCATTAAATATGGGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGC--AGAAGGAGGCATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGCAGCAATAGCCGAGTCGATCTAGC
droMoj3 scaffold_5022:680-931 - CGAAAAGAT--------------AAT--AG----CACATG--------GTTACTA------------ACCTAAA---------------------------------A-TAAGC-----------------------------------------------------------------GAA----------------------TCAA------------------------------CAATTAAATGTTTAT---------------GCTCCTATGCATTCCATTGAAATTTC---TATTAT-------------------------------------------------------------------------TAA----------TTATTAT------------------------------------AAT--------------TATTTTTATACCCT--------------------------------------------GAACCCATTATCAAT------GGGAAATCAGGGTATAATGGTTTTTGTT-------AAATGTATAAAACACGC--AGAAGGAGGCGTGGAAGACCCCATAAAATGTATATATTC---TTGATCAGGGCGACGAGCTGAGTCGATTTAGC
droGri2 scaffold_15126:1784895-1785132 + TAAAAGATGTA----GCAGTTTTAAG--AGAAAGAGAAAG-------------------------------------------------------G--------ATAATAAAGGTAAT--------------------AATA----------------------------CTTTAT-------AAAA---------------------TCATTTAATAAATCATGCTCAACTTTCGAT------------------------TGATAGTTT-------------------------------------------------------------------------------------------------------------------------C------------------------------------TATGGC-----------------------AAC--------------------------------------------CTGGAACCAGAACACAT------TG----AAAATGGGTAATAAGTTTAG----------ACTGAATGTAGCAGGC--AGAAGGAAGCATCTCCGACCCCATATAGCCTATATATTC---TGGGTCAATATCAACAACCAAGTCGATCTAGC
droAna3 scaffold_13228:147955-148190 - TTTTAGTTGAT-TTAT--TTAAAAAT--AAA-------AT--------C----C----------------AA----------------------AT--------AAAAC--AAGAAAG--GAAAGCTAAC----TTCG-GG-CGG-------------------------------AGCCGAA-----------------------------------------G-----------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATACCCTTGCAGTTCCGTATTATAATTTTTATATTTTGGTCAAAT------------------------------ATATTTTGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCCG--TGAAGGAGACATCTCAGACCATATAAAGTATATATATTC---TGGATCAGAATCACCTCCTGAGTCGATATAAG
droBip1 scf7180000395322:3754-3996 + TCGCAGGAGAT-CATT-----A-AAT--ACGCCTTGCAAA--------A----G----------------TAAG---------------------------------ATAAAATTGGT--------------------AAAA----------------------------GTACA--------GGAA------GTGGTAC-AA-GCAA------------------------------CCACAGAGTGTTAATTTT------------------------------------------------------------TC----------------ACAAAC----GCTTAGAAAGT-----------TCTGATTCGATAA----------ATATTAT------------------------------------A----------------AGTTT---------------------------------------------------TTATACCCGATACTGGA------A----------------------------------GAATGTATGTAACATAG--AGAAGGAACCATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGCATCAACAACCAAGTCGATATAGC
droKik1 scf7180000302258:357655-357877 + TGACT--------GAA--ATTATAAT--A--CCCTGCAAG--------G----G----------------TATAA--------------------T--------AAAT---AAATAAC--------------------AAAA----------------------------TTTCTA-------------------------------------------------CACAATTTTTTTT------------------------ATTTATTTT-------------------------------------------------------------------------------------------------------------------------T------------------------------------TGTAATAACATACTTTGTAAAATATTTATACCCTT----------------------------------------------------------------------GCAGGGTATTATAATTTTAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCAACAGCCGAGTCGATCTAGC
droFic1 scf7180000454015:74916-75171 + AACATGCCC----TAA--ATATCAAA--GAACATCGGAAA--------G----G----------------AA----------------------AC--------AAAGTAAAATCGAA--------------------ATTC----------------------------GCCCAA-------TAAG---------------------------------------------------------------------------------------------TTCATTTATATTTC---TTCTTTCGGGGATTTCACATTTCGTTGGGTTTTG---------------------------------------------------------------------------------CTCACACAT----------------------------TGTTGTTATACCCTT--------------------------------------------------------GC------AGAGCAAAAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGACACCTCAGACCCCATAAAGTATATATATTC---TTGATCAGCATCACCATCTGAATCGAAATATG
droEle1 scf7180000491008:2770639-2770889 - TCAAAGATATA-TGGA--GTA---AT--AAAAATATAAAA--------A----A----------------GT----------------------GC--------AAATCAAAAAA------AGATTTTAAAA----------------TAAAAACTATACA---------ACTAGG-------AAAA---------AAGACGTA----TCAATTTG-AAATGCAG--------------TTCAAAATGT--------------------------------TGATT------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------TATTTTTATACCCTT--------------------------------------------------------GC------------AGAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGACATCTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCACTAGGCGAGTCGATCTAGC
droRho1 scf7180000764260:4579-4833 - TGACC--------AAA--ATTATAAT--ACCCTCTGCAAG--------G----G----------------TATAAAA-ACA-------------AT--------AAAGCTAAGT-----------------------------------------------------------------CGA------------------------------------------------------------------------------------------------------------------------------TTTTCAGATA----------------AAATGT----TGGA---TCAT-----------TCATTTCT--GAAAAATTCAAATAGT---TTCA--AAATT----------TCCAG----------------------------GCTTG---------------------------------------------------TTATACCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCATGC-------AAAAGTATGTAACAGGT--AGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTC---TTGTTCAGGATCACTAGCCGAGTCGATCTAGC
droBia1 scf7180000299204:7163-7402 + AAAATAATAA---GAA--AACTCAAG-------------G--------C----G----------------GC----------------------GT--------AAAG-AAAAGAAGAAAAAGATCTGAA----TCCC-AC-CGCACCTAAATGCCCTGCAATCAG-----------------------------------------------------------------------------------------------------------------GTAGATCGAGATTTC---AAT-------------------------------------------A----------------------------------T----------CTC---TCCTTTT-----------------------------------------------GATTTGTATACCCTT--------------------------------------------------------GC------------AGAGGGTATAATGATTTCAGTC-------AAAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCGTCACAAGTCGAGTCGATCTAGC
droTak1 scf7180000415873:166453-166728 + TCAAAAATCAT-TGTA--GTAATAAT--C--TCATGC---------------------ATTCCAAAA--CGATTA--G----------------TC--------GATATAAAATTAGA--------------------A-----------------------------------------------ACGGACACTCATAGATAA----T-----------------------------GA---------------TTCATACTTTT--------------------AATAC---TTTCATTTA----------AA------------------------CAATA----------------------------------T----------CTT---TATTTTA-------------------------------------------------------------------------------------TATTTG--TAAAAAATTATTATACCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGGG--AGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGGATCACTAGCCGAGTCGATCTAGC
droEug1 scf7180000409676:160592-160862 - CGAAGACTT----TGACTATAATATTATAAACGCCCCAGATTTTTTTTC----C----------------GC----------------------GG--------AAAACTAAAAAAGG--------------------TAAG----------------------------ATTCTA-------GGAA--------------------------------------------------------------------------------------------------------------------CTATAAGC------TCTATTGGCTTCAGATTAAACGT----G---------------------------------------------------------------------TACACTTATAATTTTTGAGAT-----------------------G------------------------------------CAAA----TTCAGCACCCGTTACTCGT------AGAGTAAAAGGGTATATTAGATTCGTTG-------AAAAGTATGTAATAGAT--AGAAGGAAGCGTTTGCGACCCTATAAAGTATATATATTC---TTGATCAGGATCAATAGCGAAGTCGATTGAGC
dm3 chr4:1032026-1032236 - TCGATGTATAATTTGG--TTATCAAG--AGATTTTACAAA------------------------------------------------------AT--------GTCATAAAAAGAAT--------------------AAAA----------------------------GCTTGA-------AAAG--------------------------------------------------------------------------------------------------------------------CT--------------------------------------------------------------TTATATAGACT-------------------------------------------------------------------------------AATCCAA--------------------------------------------------------GC-AGATCT--A-TACAAAATATACTAGATTCGTTG-------CAAAGTATGTAACAGGTTTAACAGGAATCGTTTCCGACCATGTAAGGTACATACATACATATTGATCAGGATCAATAGCCGAGTCGATCTGGC
droSim2 2r:2031073-2031316 + TTTGAGAAAGC-AAAA--ACTAAAAT--AGAAAT---------------------------------------------------------------------------------------ATATTTTAAAAGTGTC-AAGT-GCATGAAAAAACTATTTGATTAAAAAT------AACGAAA-----------------------------------------C-----------------------T---------------------------------------------------------ATATC------------------------------------------------------------------------------------------------------------------------------------------TATTTTTATACCC-----GC-TTC-----------------------------CTTTTATACCTGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAAGCGTTCCCGACTATATAGAGTATACATATTC---TTGATCAGGATCAAGAGCCGAGTCGATCTAGC
droSec2 scaffold_26:203404-203633 - AAAC----------------------------GCGACAAT--------C----G----------------GA----------------------AC--------AGAAAACAGTAAAT--------------------CAAA----------------------------GTTTGA-------AAA--------------------------------------------------------------------------------------------------------T---TTAAATTTA----------AA------------------------AAAATT--------------------------------------------ATT---TCCTTCATATATAAATGATAACACAT----------------------------GTTAT---------------------------------------------------TTATACCCGTTACTTGT------AGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACTGGT--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCACGATCAATAGCCGAGGCGATCCAGC
droYak3 4:292105-292369 + TGCAAAATAAT-TAAA--AGGTCAAG---------TGAAC--------C----G----------------GT----------------------GCAGGCCGTTAATGTGAACATCAG--------------------CAAA----------------------------AACCAA-------ACAACAGCAAGTGCTCGCAAC----T-----------------------------CA---------------TTCATACGTTTATATA-----------------TA--------------------------------------------------------------------------------------------------------------------------------------------TGCATACTCCACTTAGTGTATTTT---------------------------------------------------TTATACCCGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCAGGATCAATAGCCGAGTCGATCTGGC
droEre2 scaffold_4929:22921897-22922148 + AGGAAGGTTAA----T--TTAAAAAT--AAACATGTAAAG--------C----T----------------GC----------------------GT--------AAATC-------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------TCAGGTT-------------------TGT----TAGA---ACGTAAGAATAATTTTCATAATC--TAAAACTACAAATAAA---TCCATCAAATT------------------------------------------------------------------------------TAATTTAAA--TCAAATTTATTTATACCCGATACTCGT------AGAGTAAAAGAGTGTACTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAATCGTTTCCGACCATATAA---------ATTC---TTGATCATGATCAATGGCCGAGTCGATTTGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TCGAAGATGAT-CAAA--ATGATAAT--AGACATCGCAAG--------C----C----------------GA----------------------GT--------AAAGTAAAAGTAAG--------------------AAAA----------------------------GCTCGA-------AAAA--------------------------------------------------------------------------------------------------------------------CCGAGGTTTTATATT----------------ACATGC----GATT--------------------------------------------------------------------------------------------------------------------------TCATTCTTATATTTTTACATTTT--TAAAATATTATTGTACCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCATAATGTGTATACATTC---TTGATCAGCATCAATAGCCGAGTCGATTGAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGAGTCG.......24208.45169016900000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCG.......21201.603203200000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGCATCAATAGCCGAGT.........24201.052102100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTC........24200.901800000001800
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCC--AGAAGGAATC................................................................25200.551101100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT.....27200.3570000000700
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGCATCAATAGCC.............21200.3060600000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATTGAGT19200.2040300001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGT.........23200.1530003000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAAAAA-TGGATGTGTGTAA.................................................................................2190.1110000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAA-TGGATGTGTGTAACG...............................................................................21100.1010000000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCATTTCCGACCCCAT..................................................23100.1010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCC--AGAAGGAATCATTTCCGACCC.....................................................26110.0910010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCATTTCCGACCCCA...................................................22110.0910100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCATTTCCGACCCC....................................................21120.0810100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAATCATTTCCGACCCC....................................................20120.0810100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATTC---TTGATCAGCATCAA..................21170.0610100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAGT28180.0610100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGC..............18200.0510001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTAACGTCC--AGAAGG....................................................................21200.0510000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGT22200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGCATCAATAGCC.............22200.0510001000000
droPer2
TCGAAGATGAT-CAAA--ATGATAAT--AGACATCGCAAG--------C----C----------------GA----------------------GT--------AAAGTAAAAGTAAG--------------------AAAA----------------------------GCTCGA-------AAAA--------------------------------------------------------------------------------------------------------------------CCGAGGTTTTATATT----------------ACATGC----GATT--------------------------------------------------------------------------------------------------------------------------TCATTCTTATATTTTTACATTTT--TAAAATATTATTGTACCCGATACTCTA------A---------------ATGAGTTTGGGTAAAAA-TGGATGTGTGTAACGTCC--AGAAGGAATCATTTCCGACCCCATAATGTGTATATATTC---TTGATCAGCATCAATAGCTGAGTCGATTGAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATATATTC---TTGATCAGCA......................21200.051000010
droWil2
TCAAAAAGGA---AAA--ATGTTATT-------------G--------C----CAAGTATACT--------------------------------------------GCAAGGGTATA-------TAAAC----TTCG--G-CAT-------------------------------AGCCGAA-----------------------------------------G-----------------------T------TAG---------------------CTTCTTTGATATTTC---TATTTG------------------------------------C----AATT------------------------------T----------TTT---TTTTT-T-----------------------------TATAGACATTTCTGGTAGTTTTTTTATACCCTT--------------------------------------------------------GC------------AGAGGGTATTATAAAATTGGTC-------AGATGTTTGTAACGCAC--AGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCATGAGAAGCTAAGTCGATATAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTAACGCAC--AGAAGGAGACGTTT............................................................25201.9038038000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAAAATTGGTC-------AGATGTTTGT...................................................................................26200.30606000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------GC------------AGAGGGTATTATAAAATTGGTC-------A............................................................................................26200.20400040
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAATTGGTC-------AGATGTTTGTAACGC..............................................................................28200.10202000
..............................................................................................................................................CAT-------------------------------AGCCGAA-----------------------------------------G-----------------------T------TAG---------------------CTTCTTTGATAT.............................................................................................................................................................................................................................................................................................................................................................................27200.05101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATTGGTC-------AGATGTTTG....................................................................................20200.05100010
droVir3
TATGACAAAAT-AAAT--TTGGCTAT--GGATATT------------------T----------------A--A----ATAAAAGAGTTAAAAATT--------GTTAT--------------------------ATA-AT------------------------------------------GGAA--------------------------------------------------------------------------------------------------------------------CCTTGATCTCCTGTT----------------AGACGA----ACCC--------------------------------------------------------------------------------------------------------------------------TCATTT-----------------------------TTATACCCTGAACCCATTAAATATGGGTATAAGGGTATATTGTATTTGTGCAAAATCCAAATGTATGTAACAGGC--AGAAGGAGGCATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGCAGCAATAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGGCATC.............................................................26100.202000000001000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGCAGCAATAGCCGAGTCG.......27120.172000000000000000000000000010000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGCAGCAATAG...............24200.153000000000000000000000000030000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGGC................................................................23140.142000000002000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATATGGGTATAAGGGTATATTGTA...........................................................................................................27160.132000010000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGC--AGAAGGAG..................................................................22170.122000000000000000000000000000100000000000000000000000000000000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAGGCA...............................................................21200.102000000000010000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGCAGCAATAGCCG............23200.102000000000000000000000000000000000020000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGCAGCAATAGC..............25200.102000000000000000000000000000001000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGGCAT..............................................................25110.091000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTATGTAACAGGC--AGAAGGAGG.................................................................24110.091001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAGGCATC.............................................................23110.091000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC--AGAAGGAGGCATC.............................................................21120.081000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCAGCAATAGCCGAGTCG.......25130.081000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTATGTAACAGGC--AGAAGGAG..................................................................24140.071000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAGCAATAGCCGAGTCGA......24150.071000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAATATGGGTATAAGGGT...................................................................................................................21150.071000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAGG.................................................................22150.071000000001000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AGAAGGAGGCATCTCCGACC......................................................21150.071000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGC--AGAAGGAGGCAT..............................................................21170.061000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGCATCTCCGACCC.....................................................19180.061001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGGCATCTCCGACCC.....................................................21180.061001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAATAGCCGAGTCG.......19180.061000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATCTCCGACCCCATA.................................................21190.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGCAGCAATAGCCGAGTC........27200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGCAGCAATAGCCG............27200.051000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATTTGTGCAAAATCCAAAT.........................................................................................23200.051000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGCAGCAATAG...............19200.051000000010000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTAACAGGC--AGAAGG....................................................................26200.051000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAG..................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC--AGAAGGAGGCATCTCCGT........................................................26200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAG..................................................................18200.051100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAGGC................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCATCTCCGACCCC....................................................18200.051000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTC---TTGATCAGCAGCAATAGCC.............25200.051000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGCAGCAATAGCCGAGTC........26200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
CGAAAAGAT--------------AAT--AG----CACATG--------GTTACTA------------ACCTAAA---------------------------------A-TAAGC-----------------------------------------------------------------GAA----------------------TCAA------------------------------CAATTAAATGTTTAT---------------GCTCCTATGCATTCCATTGAAATTTC---TATTAT-------------------------------------------------------------------------TAA----------TTATTAT------------------------------------AAT--------------TATTTTTATACCCT--------------------------------------------GAACCCATTATCAAT------GGGAAATCAGGGTATAATGGTTTTTGTT-------AAATGTATAAAACACGC--AGAAGGAGGCGTGGAAGACCCCATAAAATGTATATATTC---TTGATCAGGGCGACGAGCTGAGTCGATTTAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...AAAGAT--------------AAT--AG----CACATG--------GTTACTA------------ACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.574400000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGTATAATGGTTTTTGT.....................................................................................................2180.252200000
..................................................................................................................................................................................................................................................TAAATGTTTAT---------------GCTCCTATGCATTCCA....................................................................................................................................................................................................................................................................................................................................................................................2750.201100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGTATAATGGTTTTTGTT-------.............................................................................................2270.141100000
............................AG----CACATG--------GTTACTA------------ACCTAAA---------------------------------A-TAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2770.141100000
CGAAAAGAT--------------AAT--AG----CACATG--------GTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2480.131100000
.GAAAAGAT--------------AAT--AG----CACATG--------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.131100000
...AAAGAT--------------AAT--AG----CACATG--------GTTACTA------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2580.131100000
...AAAGAT--------------AAT--AG----CACATG--------GTTACTA------------AC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2680.131100000
CGAAAAGAT--------------AAT--AG----CACATG--------GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.131000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTATAATGGTTTTTGTT-------T............................................................................................22160.061100000
droGri2
TAAAAGATGTA----GCAGTTTTAAG--AGAAAGAGAAAG-------------------------------------------------------G--------ATAATAAAGGTAAT--------------------AATA----------------------------CTTTAT-------AAAA---------------------TCATTTAATAAATCATGCTCAACTTTCGAT------------------------TGATAGTTT-------------------------------------------------------------------------------------------------------------------------C------------------------------------TATGGC-----------------------AAC--------------------------------------------CTGGAACCAGAACACAT------TG----AAAATGGGTAATAAGTTTAG----------ACTGAATGTAGCAGGC--AGAAGGAAGCATCTCCGACCCCATATAGCCTATATATTC---TGGGTCAATATCAACAACCAAGTCGATCTAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTTTAGTTGAT-TTAT--TTAAAAAT--AAA-------AT--------C----C----------------AA----------------------AT--------AAAAC--AAGAAAG--GAAAGCTAAC----TTCG-GG-CGG-------------------------------AGCCGAA-----------------------------------------G-----------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATACCCTTGCAGTTCCGTATTATAATTTTTATATTTTGGTCAAAT------------------------------ATATTTTGGTATTATAATTTTGGTC-------AAAAGTGTGCAACGCCG--TGAAGGAGACATCTCAGACCATATAAAGTATATATATTC---TGGATCAGAATCACCTCCTGAGTCGATATAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCG--TGAAGGAGACATCTC...........................................................2250.201000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAACGCCG--TGAAGGAGAC................................................................2460.171010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TGGATCAGAATCACCTCCTGAGT.........2590.111010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCCG--TGAAGGAGA.................................................................2290.111000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCAACGCCG--TGAAGGA...................................................................20100.101000001
.........................................................................................................................AAAGCTAAC----TTCG-GG-CGG-------------------------------AGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000
droBip1
TCGCAGGAGAT-CATT-----A-AAT--ACGCCTTGCAAA--------A----G----------------TAAG---------------------------------ATAAAATTGGT--------------------AAAA----------------------------GTACA--------GGAA------GTGGTAC-AA-GCAA------------------------------CCACAGAGTGTTAATTTT------------------------------------------------------------TC----------------ACAAAC----GCTTAGAAAGT-----------TCTGATTCGATAA----------ATATTAT------------------------------------A----------------AGTTT---------------------------------------------------TTATACCCGATACTGGA------A----------------------------------GAATGTATGTAACATAG--AGAAGGAACCATCTCCGACCCCATAAAGTATATATATTC---TTGATCAGCATCAACAACCAAGTCGATATAGCSizeHit CountTotal NormTotal
No Reads
droKik1
TGACT--------GAA--ATTATAAT--A--CCCTGCAAG--------G----G----------------TATAA--------------------T--------AAAT---AAATAAC--------------------AAAA----------------------------TTTCTA-------------------------------------------------CACAATTTTTTTT------------------------ATTTATTTT-------------------------------------------------------------------------------------------------------------------------T------------------------------------TGTAATAACATACTTTGTAAAATATTTATACCCTT----------------------------------------------------------------------GCAGGGTATTATAATTTTAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCAACAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droFic1
AACATGCCC----TAA--ATATCAAA--GAACATCGGAAA--------G----G----------------AA----------------------AC--------AAAGTAAAATCGAA--------------------ATTC----------------------------GCCCAA-------TAAG---------------------------------------------------------------------------------------------TTCATTTATATTTC---TTCTTTCGGGGATTTCACATTTCGTTGGGTTTTG---------------------------------------------------------------------------------CTCACACAT----------------------------TGTTGTTATACCCTT--------------------------------------------------------GC------AGAGCAAAAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGACACCTCAGACCCCATAAAGTATATATATTC---TTGATCAGCATCACCATCTGAATCGAAATATGSizeHit CountTotal NormTotal
No Reads
droEle1
TCAAAGATATA-TGGA--GTA---AT--AAAAATATAAAA--------A----A----------------GT----------------------GC--------AAATCAAAAAA------AGATTTTAAAA----------------TAAAAACTATACA---------ACTAGG-------AAAA---------AAGACGTA----TCAATTTG-AAATGCAG--------------TTCAAAATGT--------------------------------TGATT------------------------------------------------------------------------------------------------------------------TT-----------------------------------------------TATTTTTATACCCTT--------------------------------------------------------GC------------AGAGGGTATTATAATTTCAGTC-------AGAAGTTTGCAACGCAG--TGAAGGAGACATCTCCGACCCTATAAAGTATATATATTC---TTGATCAGCATCACTAGGCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droRho1
TGACC--------AAA--ATTATAAT--ACCCTCTGCAAG--------G----G----------------TATAAAA-ACA-------------AT--------AAAGCTAAGT-----------------------------------------------------------------CGA------------------------------------------------------------------------------------------------------------------------------TTTTCAGATA----------------AAATGT----TGGA---TCAT-----------TCATTTCT--GAAAAATTCAAATAGT---TTCA--AAATT----------TCCAG----------------------------GCTTG---------------------------------------------------TTATACCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCATGC-------AAAAGTATGTAACAGGT--AGAAGGAAGCGTTTCCGACCCTATAAAGTATATATATTC---TTGTTCAGGATCACTAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droBia1
AAAATAATAA---GAA--AACTCAAG-------------G--------C----G----------------GC----------------------GT--------AAAG-AAAAGAAGAAAAAGATCTGAA----TCCC-AC-CGCACCTAAATGCCCTGCAATCAG-----------------------------------------------------------------------------------------------------------------GTAGATCGAGATTTC---AAT-------------------------------------------A----------------------------------T----------CTC---TCCTTTT-----------------------------------------------GATTTGTATACCCTT--------------------------------------------------------GC------------AGAGGGTATAATGATTTCAGTC-------AAAAGTTTGCAACGCAG--TGAAGGAGACGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGCGTCACAAGTCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droTak1
TCAAAAATCAT-TGTA--GTAATAAT--C--TCATGC---------------------ATTCCAAAA--CGATTA--G----------------TC--------GATATAAAATTAGA--------------------A-----------------------------------------------ACGGACACTCATAGATAA----T-----------------------------GA---------------TTCATACTTTT--------------------AATAC---TTTCATTTA----------AA------------------------CAATA----------------------------------T----------CTT---TATTTTA-------------------------------------------------------------------------------------TATTTG--TAAAAAATTATTATACCCGTTACTCGT------AGAGTAAAAGGGTATATTGTATTCGTGC-------AAAAGTATGTAACAGGG--AGAAGGAAGCGTTTCCGACCCCATAAAGTATATATATTC---TTGATCAGGATCACTAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotal
No Reads
droEug1
CGAAGACTT----TGACTATAATATTATAAACGCCCCAGATTTTTTTTC----C----------------GC----------------------GG--------AAAACTAAAAAAGG--------------------TAAG----------------------------ATTCTA-------GGAA--------------------------------------------------------------------------------------------------------------------CTATAAGC------TCTATTGGCTTCAGATTAAACGT----G---------------------------------------------------------------------TACACTTATAATTTTTGAGAT-----------------------G------------------------------------CAAA----TTCAGCACCCGTTACTCGT------AGAGTAAAAGGGTATATTAGATTCGTTG-------AAAAGTATGTAATAGAT--AGAAGGAAGCGTTTGCGACCCTATAAAGTATATATATTC---TTGATCAGGATCAATAGCGAAGTCGATTGAGCSizeHit CountTotal NormTotal
No Reads
dm3
TCGATGTATAATTTGG--TTATCAAG--AGATTTTACAAA------------------------------------------------------AT--------GTCATAAAAAGAAT--------------------AAAA----------------------------GCTTGA-------AAAG--------------------------------------------------------------------------------------------------------------------CT--------------------------------------------------------------TTATATAGACT-------------------------------------------------------------------------------AATCCAA--------------------------------------------------------GC-AGATCT--A-TACAAAATATACTAGATTCGTTG-------CAAAGTATGTAACAGGTTTAACAGGAATCGTTTCCGACCATGTAAGGTACATACATACATATTGATCAGGATCAATAGCCGAGTCGATCTGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTG-------CAAAGTATGTAACA...............................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................ATCAAG--AGATTTTACAAA------------------------------------------------------AT--------GT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAATATACTAGATTCGTTG-------C............................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........TAATTTGG--TTATCAAG--AGATTTTACAAA------------------------------------------------------AT--------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................T--------------------AAAA----------------------------GCTTGA-------AAAG--------------------------------------------------------------------------------------------------------------------CT--------------------------------------------------------------TTATATAGACT-------------------------------------------------------------------------------.......................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTG-------CAAAGTATG....................................................................................2322.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------CAAAGTATGTAACAGGTTTAA........................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATAGACT-------------------------------------------------------------------------------AATCCAA--------------------------------------------------------GC-AGATCT--A-TACAA......................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATATTGATCAGGATCAATAGCCGA...........2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TAATTTGG--TTATCAAG--AGATTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TTTGG--TTATCAAG--AGATTTTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGAATCGTTTCCGACCAT....................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................TACAAA------------------------------------------------------AT--------GTCATAAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACATACATACATATTGATCAGGATC....................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
.......................................A------------------------------------------------------AT--------GTCATAAAAAGAAT--------------------AAAA----------------------------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGTTG-------CAAAGTATGTAACAGGT............................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCATGTAAGGTACATA........................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...............................TTTTACAAA------------------------------------------------------AT--------GTCATAAAAAGAAT--------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAAATATACTAGATTCGTTG-------.............................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
........TAATTTGG--TTATCAAG--AGATTTTACAAA------------------------------------------------------AA--------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCATGTAAGGTACATACATACT..................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------CAAAGTATGTAACAGGTTTAACA......................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGTTTAACAGG....................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATACATATTGATCAGGATCAATAGCC.............2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAATATACTAGATTCGTTG-------CAAAG........................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------------------------AATCCAA--------------------------------------------------------GC-AGATCT--A-TACAAAA....................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................TATAGACT-------------------------------------------------------------------------------AATCCAA--------------------------------------------------------GC-AGATCT--A-T..........................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TATCAAG--AGATTTTACAAA------------------------------------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTGATCAGGATCAA..................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................T--------GTCATAAAAAGAAT--------------------AAAA----------------------------GCTTGA-------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGACCATGTAAGGTACATACATACAT.................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TATCAAG--AGATTTTACAAA------------------------------------------------------AT--------GTCATAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TTGA-------AAAG--------------------------------------------------------------------------------------------------------------------CT--------------------------------------------------------------TTATATAGACT-------------------------------------------------------------------------------AATC...................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
TTTGAGAAAGC-AAAA--ACTAAAAT--AGAAAT---------------------------------------------------------------------------------------ATATTTTAAAAGTGTC-AAGT-GCATGAAAAAACTATTTGATTAAAAAT------AACGAAA-----------------------------------------C-----------------------T---------------------------------------------------------ATATC------------------------------------------------------------------------------------------------------------------------------------------TATTTTTATACCC-----GC-TTC-----------------------------CTTTTATACCTGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAAGCGTTCCCGACTATATAGAGTATACATATTC---TTGATCAGGATCAAGAGCCGAGTCGATCTAGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGC--AGAAGGAAGCGTT.............................................................25206.151230000000002121000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------AAAAGTATGTAACAGGC--AGAAGGA...................................................................26205.501100000004406600000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAGAGCCGAGTCGAT.....2232.00600000050100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG-------AAAAG........................................................................................29201.95390000002019000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGAAGGAA..................................................................25201.6533000000000330000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--..........................................................................24201.6032000000000001031000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTATACTAGATTCGTTG-------AAAAG........................................................................................24201.5030000000030000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAAGAGCCGAGTCGA......2621.00200000000000011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATACATATTC---TTGATCAGGATC....................2611.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTATACTAGATT.........................................................................................................24201.0020000000000020000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAAGAGCCGAGTCGATC....2421.00200000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC--AGAAGGAAGCGTT.............................................................16200.9519000000000019000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTG-------AA...........................................................................................25200.8517000000170000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--AGA.......................................................................27200.851700290000002004000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGC--AGAAGGA...................................................................19200.8016000000003013000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------AAAAGTATGTAACAGGC--AGAAGGAA..................................................................27200.701400000024080000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAGAGCCGAGTCG.......2030.67200000020000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGCCGAGT.........2630.67200010000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGC--A.........................................................................24200.6513000000020000110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGC..............2180.63500000000005000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGC--AGAAGGAAGCGT..............................................................16200.6012000000000012000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG-------A............................................................................................25200.551100000009020000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAAGAGC..............1980.50400000000004000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGC--..........................................................................23200.501000000070030000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAAGAGCCGAGTCGATCT...2420.50100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTC---TTGATCAGGATCAAGAGCCGAGTC........2820.50100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGCCGAGTC........2720.50100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAG............................................................................................................24200.5010000000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTTG-------AA...........................................................................................28200.501000000090000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTA.............................................................................................................23200.45900000000009000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG-------AA...........................................................................................26200.45900000000000090000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--AG........................................................................26200.45900010005001002000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGC--AGA.......................................................................24200.45900000033300000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTG-------AAAAG........................................................................................27200.45900000072000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--AGAA......................................................................28200.45900010010600010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAAGAGC..............1690.44400000000004000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGC--AGA.......................................................................26200.40800000000070001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--A.........................................................................25200.40800000080000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGGATCAAGAGC..............2080.38300000000003000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTG-------AAAAG........................................................................................28200.35700000034000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGCCGA...........2430.33100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAAAAGGGTATACTAGATTCGTTG-------AAA..........................................................................................29200.30600000042000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTC---TTGATCAGGAT.....................20100.30300000000003000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG-------AAAAG........................................................................................26200.30600000000006000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGA................1980.25200000001100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAAGAGCCGA...........1840.25101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGATCAAGAGC..............2380.25200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---TTGATCAGGATCAAGA................1890.22200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAGA...........................................................................................................25200.20400000000020020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG-------AAA..........................................................................................27200.20400000000004000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTATACT..............................................................................................................19200.20400000000004000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGC--AG........................................................................25200.20400000000000040000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAGATT.........................................................................................................27200.20400000000004000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTG-------AAAAGTAT.....................................................................................21200.15300000000201000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGC--AGAAGGAAGCGT..............................................................24200.15300010020000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG-------AAAAGT.......................................................................................27200.15300000000003000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAACAGGC--AGA.......................................................................25200.15300000000300000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGC--AGAAGGAA..................................................................22200.15300000000102000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTG-------AAA..........................................................................................26200.15300000000003000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGA.......................................................................16200.15300000000003000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTG-------AAAAGT.......................................................................................21200.15300300000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACATATTC---TTGATCAGGAT.....................2270.14100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAAGAGCCGAGTCGATCTAC.2570.14100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGATCAAGA................2180.13100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAAGAGC..............1780.13100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAG...............2080.13100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTGTTACTCGT------AGAGTAAA........................................................................................................................2180.13100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAAGAGC..............1880.13100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCTGTTACTCGT------AGAGTA..........................................................................................................................2180.13100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTG-------AAAAGTATGTAACAGGC--AGAAGGA...................................................................30200.10200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTG-------AAAAG........................................................................................21200.10200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATATTC---TTGATCAGGA......................19100.10100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAA..................15200.10200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGT------AGAGTAAAAGGGTATACTAG............................................................................................................27200.10200000000000020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-------AAAAGTATGTAACAGGC--AGAAGGA...................................................................27200.10200000002000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAAAGGGTATACTAG............................................................................................................19200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTG-------AAA..........................................................................................25200.10200000000002000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGAAGG....................................................................23200.10200020000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGA...................................................................31200.10200000020000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG-------.............................................................................................24200.10200000000000020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGT......................................................................................................19200.10200000000002000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGC--AGAAGGA...................................................................23200.10200000002000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAAGAGC..............15110.09100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAAG.................16120.08100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGAAG.....................................................................22200.05100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAG..............................................................................22200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGTTG-------AAAAGTATGTAACAGGC--..........................................................................27200.05100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTG-------AAAAGTATGTAACAGGC--AGAAGGA...................................................................29200.05100000000100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGC--AGAAGGA...................................................................22200.05100000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGC--AGAAGGAA..................................................................24200.05100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAAGCGT..............................................................25200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGATC....................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGGGTATACTAGATTCGTTG-------A............................................................................................26200.05100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACAGGC--AGAC......................................................................28200.05100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAAGCGTT.............................................................23200.05100000000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGAAGGAAGCGTT.............................................................30200.05100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGGTATACTAGATTCGTTG-------AAAA.........................................................................................27200.05100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTC---TTGATCAGGAT.....................16200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGC--AGAAG.....................................................................26200.05100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTG-------AAAAGTA......................................................................................29200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTATACTAGATTCGTTG-------AAA..........................................................................................24200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTC---TTGATCAGGATCAAGAGA..............21200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAAAAGGGTATACTAGATTCGTT.....................................................................................................26200.05100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTG-------.............................................................................................22200.05100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------AGAGTAAAAGGGTATACTA.............................................................................................................21200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGAA..................................................................21200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGC--AGAAGGAAGCGTT.............................................................21200.05100000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGA.......................................................................20200.05100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTA..................................................................................................................15200.05100000000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG-------AAAAGTATGTAACAGGC--AGAAGGAA..................................................................29200.05100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG-------AAAA.........................................................................................28200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGGGTATACTAGATTCGTTG-------AAAAGTA......................................................................................31200.05100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTATGTAACAGGC--AGAAGGAAG.................................................................26200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT------AGAGTAAAAGGGTATACTAGATA.........................................................................................................27200.05100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCGTTG-------AA...........................................................................................24200.05100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGC--AGAAGGA...................................................................20200.05100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT------AGAGTAAAAGGGTATACTAGATT.........................................................................................................26200.05100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGC--AGAAGGAAGCGTT.............................................................20200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AGAGTAAAAGGGTATACTAGATTCGT......................................................................................................27200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCGTTG-------A............................................................................................21200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT------AGAGTAAAAGGGTATACTAGA...........................................................................................................24200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTC---TTGATCAGGATC....................18200.05100000000001000000
droSec2
AAAC----------------------------GCGACAAT--------C----G----------------GA----------------------AC--------AGAAAACAGTAAAT--------------------CAAA----------------------------GTTTGA-------AAA--------------------------------------------------------------------------------------------------------T---TTAAATTTA----------AA------------------------AAAATT--------------------------------------------ATT---TCCTTCATATATAAATGATAACACAT----------------------------GTTAT---------------------------------------------------TTATACCCGTTACTTGT------AGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACTGGT--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCACGATCAATAGCCGAGGCGATCCAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACTGGT--AGA.......................................................................2711.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAACTGG.............................................................................2360.1711000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTG-------AAAAGTATGTAAC................................................................................20200.0511000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTG-------AAAAGT.......................................................................................21200.0510010
droYak3
TGCAAAATAAT-TAAA--AGGTCAAG---------TGAAC--------C----G----------------GT----------------------GCAGGCCGTTAATGTGAACATCAG--------------------CAAA----------------------------AACCAA-------ACAACAGCAAGTGCTCGCAAC----T-----------------------------CA---------------TTCATACGTTTATATA-----------------TA--------------------------------------------------------------------------------------------------------------------------------------------TGCATACTCCACTTAGTGTATTTT---------------------------------------------------TTATACCCGTTACTCGT------AGAGTAAAAGGGTATACTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAAGCGTTTCCGACCATATAAAGTATATATATTC---TTGATCAGGATCAATAGCCGAGTCGATCTGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGC--AGAAGGAAGCGTTTCCG.........................................................27203.0060000000000060
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGC--AGAAGGAAGCGT..............................................................21200.501000200080000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--AGAAGGAAGCGTTTCCGACCATAT..................................................26200.45900900000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTC---TTGATCAGGATCAATAGCCG............27200.35707000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAATAGCCGAGTCGAT.....28200.20400000000004
...........................................................................................................GTGAACATCAG--------------------CAAA----------------------------AACCAA-------ACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24180.17303000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTT---------------------------------------------------TTATACCCGTTACTCGT------AGAG............................................................................................................................27200.10202000000000
...................................................................................................................................................................................................................................................................TACGTTTATATA-----------------TA--------------------------------------------------------------------------------------------------------------------------------------------TGCATACTCCACT.....................................................................................................................................................................................................................27100.10101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---TTGATCAGGATCAATAGCCG............21200.10202000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATACTAGATTCGTTG-------AAAAGT.......................................................................................23200.10220000000000
...........................................................................................................GTGAACATCAG--------------------CAAA----------------------------AACCAA-------ACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26170.06101000000000
..............................................................................................................AACATCAG--------------------CAAA----------------------------AACCAA-------ACAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27170.06101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATC....19200.05100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCG............20200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATGTAACAGGC--AGAA......................................................................20200.05100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGC--AGAAGGAAGCGTTTCCG.........................................................24200.05100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT------AGAGTAAAAGGGTATACTA.............................................................................................................21200.05100000010000
droEre2
AGGAAGGTTAA----T--TTAAAAAT--AAACATGTAAAG--------C----T----------------GC----------------------GT--------AAATC-------------------------------------------------------------------------------------------------------------------------------------------------TT-------------------------------------------------------TCAGGTT-------------------TGT----TAGA---ACGTAAGAATAATTTTCATAATC--TAAAACTACAAATAAA---TCCATCAAATT------------------------------------------------------------------------------TAATTTAAA--TCAAATTTATTTATACCCGATACTCGT------AGAGTAAAAGAGTGTACTAGATTCGTTG-------AAAAGTATGTAACAGGC--AGAAGGAATCGTTTCCGACCATATAA---------ATTC---TTGATCATGATCAATGGCCGAGTCGATTTGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCGATACTCGT------AGAGT...........................................................................................................................2190.1110000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATTCGTTG-------AAA..........................................................................................18200.0511000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATTCGTTG-------AAAA.........................................................................................19200.0510001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAGATTCGTTG-------AAAAGT.......................................................................................21200.0510000010

Generated: 05/18/2015 at 12:38 AM