ID:

dps_1386

 Coordinate:

4_group1:3015208-3015358 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.2 -18.8 -18.8

Flybase annnotation

exon [dpse_GLEANR_16982:1]; CDS [Dpse\GA25422-cds]; intron [Dpse\GA25422-in]

Repeatable elements

NameClassFamilyStrand
(GAA)nSimple_repeatSimple_repeat+
mature
  1. XL_group1e:6411199-6411217 -
  2. dps_1386  4_group1:3015256-3015274 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCATCAAGAATTAAAACTTTGGAAGTCTATAATCCGTAACCCGATTAACCGTAATTGGTGCGAACAATTAAAGAACAAGCTTATCAAGAAGAACAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAAGAGCATCTGCCTGCGCGGGTCAAGGCTGTGCTCGACTTGAAACGAAAAAATTACATAAATTTATTACGAAAGCCAACAGGCCATGGTGCAAGGAAATACCTGAAAAGGTTTGGTAAGGATC
**************************************************.((((((.......)))))).....(((((((......))).......................................((((((..((((((....))..)))).))))))..))))...((((.(((((.....))))).)).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body
.............................................................................................CAAGAAGACAACGAAGAAAAAGCAG..................................................................................................................................... 25 3 1 2.00 2 0 2 0 0
......................................................................................AGAAGAGCAAGAAGAAAAAG................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0
.......................................................TGGTGCGAACAATTAAAGAAA............................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0
.............................................................................................................................................................................................................................GGATATACCTGAGAAGGAT........... 19 3 18 0.39 7 5 0 0 2
...........................................................................................................AGAAAAAGAAGAAAAAGAA............................................................................................................................. 19 0 3 0.33 1 1 0 0 0
..................................................................................................AGAAAAAGAAGAAAAAGAA...................................................................................................................................... 19 0 3 0.33 1 1 0 0 0
.......................................................................................................AAGAAGAAAAAGAAGAAAAGG............................................................................................................................... 21 1 4 0.25 1 1 0 0 0
..............................................................................................AAGAAGAAAAAGAAGAAAAGG........................................................................................................................................ 21 1 4 0.25 1 1 0 0 0
......................................................................................AGAAGAGCAAGAAGAAAAA.................................................................................................................................................. 19 1 5 0.20 1 1 0 0 0
......................................................................................AGAAGAACAAGAAGAGATTGAAG.............................................................................................................................................. 23 3 6 0.17 1 1 0 0 0
......................................................................................................AAGGAAGAAAAAGAAGAAAA................................................................................................................................. 20 1 7 0.14 1 1 0 0 0
...........................................................................CAAGCTCATGAAGAAGAAC............................................................................................................................................................. 19 2 8 0.13 1 1 0 0 0
...............................................................................................AGAAGAGAAGGAAGAATAAGAAGA.................................................................................................................................... 24 3 10 0.10 1 1 0 0 0
........................................................................................................AGAAGAGAAGGAAGAATAAGAAGA........................................................................................................................... 24 3 10 0.10 1 1 0 0 0
......................................................................................................AAAGAAGAAATAGAAGAA................................................................................................................................... 18 1 15 0.07 1 1 0 0 0
...............................................................................................................AAAGAAGAAATAGAAGAA.......................................................................................................................... 18 1 15 0.07 1 1 0 0 0
..............................................................................................................................................................................................................................GAAATACGTGAAAAGATTT.......... 19 2 15 0.07 1 1 0 0 0
.............................................................................................................AAAAAGAAGAAAAAGAAGGA.......................................................................................................................... 20 1 17 0.06 1 1 0 0 0
....................................................................................................AAAAAGAAGAAAAAGAAGGA................................................................................................................................... 20 1 17 0.06 1 1 0 0 0

Anti-sense strand reads

CGTAGTTCTTAATTTTGAAACCTTCAGATATTAGGCATTGGGCTAATTGGCATTAACCACGCTTGTTAATTTCTTGTTCGAATAGTTCTTCTTGTTCTTCTTTTTCTTCTTTTTCTTCTTTTTCTTCTTTCTCGTAGACGGACGCGCCCAGTTCCGACACGAGCTGAACTTTGCTTTTTTAATGTATTTAAATAATGCTTTCGGTTGTCCGGTACCACGTTCCTTTATGGACTTTTCCAAACCATTCCTAG
**************************************************.((((((.......)))))).....(((((((......))).......................................((((((..((((((....))..)))).))))))..))))...((((.(((((.....))))).)).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body
.......................................................................................CTTCTTGTTCGTCTGTTTCTT............................................................................................................................................... 21 2 3 0.33 1 1 0 0
................................................................................................................................................CGCCCAGTTGCGACTCGGGCT...................................................................................... 21 3 4 0.25 1 0 1 0
......................................................................................TCTTTTTGTTCTTCTTTTTCTTGT............................................................................................................................................. 24 2 6 0.17 1 1 0 0
........................................................................................TTCTTGTTCGTCTGTTTCTT............................................................................................................................................... 20 2 10 0.10 1 0 0 1
...................................................................................................................................................................................................CCCTTTTGGTTGTCCGGTA..................................... 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:3015158-3015408 + dps_1386 GCATCAAGAATTAAAACTTTGGAAGTCTATAATCCGTAACCCGATTAACCGTAATTGGTGCGAACAATTAAAGAACAAGCTTATCAAGAAGAACAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAAGAGCATCTGCCTGCGCGGGTCAAGGCTGTGCTCGACTTGAAACGAAAAAATTACATAAATTTATTACGAAAGCCAACAGGCCATGGTGCAAGGAAATACCTGAAAAGGTTTGGTAAGGATC
droPer2 scaffold_5:2205142-2205377 - GCATCAAGAATTAAAACTTTGGAAGTCTATAATCCGTAACCCGATTAACCGTAATTTGTGCGAACAAGTAAAGAACAAGCT---------------GAAGAACAAGACGAAAAAGAAGAAAAAGAAGAAAGATCATTTGCCTGCGCGGGTCAAGGCTGTGCTCGACTTGAAACGAAAAAATTACATAAATTTATTACGAAAGCCAACAGGCCATGGTGCAAGCAAATACCTGAAAAGGTTTGGTAAGGATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCATCAAGAATTAAAACTTTGGAAGTCTATAATCCGTAACCCGATTAACCGTAATTGGTGCGAACAATTAAAGAACAAGCTTATCAAGAAGAACAAGAAGAAAAAGAAGAAAAAGAAGAAAAAGAAGAAAGAGCATCTGCCTGCGCGGGTCAAGGCTGTGCTCGACTTGAAACGAAAAAATTACATAAATTTATTACGAAAGCCAACAGGCCATGGTGCAAGGAAATACCTGAAAAGGTTTGGTAAGGATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................TGGTGCGAACAATTAAAGAAA...............................................................................................................................................................................2111.0010000000010
...........................................................................................................AGAAAAAGAAGAAAAAGAA.............................................................................................................................1930.3310100000000
..................................................................................................AGAAAAAGAAGAAAAAGAA......................................................................................................................................1930.3310100000000
droPer2
GCATCAAGAATTAAAACTTTGGAAGTCTATAATCCGTAACCCGATTAACCGTAATTTGTGCGAACAAGTAAAGAACAAGCT---------------GAAGAACAAGACGAAAAAGAAGAAAAAGAAGAAAGATCATTTGCCTGCGCGGGTCAAGGCTGTGCTCGACTTGAAACGAAAAAATTACATAAATTTATTACGAAAGCCAACAGGCCATGGTGCAAGCAAATACCTGAAAAGGTTTGGTAAGGATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 12:37 AM