ID:

dps_138

 Coordinate:

Unknown_group_23:14048-14116 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.1 -29.9 -29.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
BEL1_I_Dpse-intLTRPao+
mature
  1. dps_138  Unknown_group_23:14096-14115 +
  2. Unknown_singleton_1075:364-383 +
  3. 2:25198943-25198962 -
star

Sense Strand Reads

GCATTAGGAAGGCCGACGTACGCGGCCTTCGAGGGAACGCGCTCCATCCCGACGCATTCCAGACTGCCTGGAGGAAGCAGGAGGCCTCATGAGCTCCACGGTAACCAACGGAGGCTGGGACAGAGCAGTTCCCAACTGGACCGGAGTCCACATGCCAGGACCCACGGAA
**************************************((((((..(((((..((.((((....(((((((((.....(((...)))......))))).))))......)))))))))))..)))).))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 M022
male body		 M062
head
 M059
embryo
..................................................................................................CGGTAACCAACGGAGGCTGGGAC................................................ 23 0 3 8.67 26 19 1 1 2 2 1 0
..................................................................................................CGGTAACCAACGGAGGCTGGGA................................................. 22 0 3 4.67 14 9 2 2 1 0 0 0
..................................................................................................CGGTAACCAACGGAGGCTGGGACA............................................... 24 0 3 4.00 12 11 0 0 0 1 0 0
..................................................................................................CGGTAACCAACGGAGGCTGG................................................... 20 0 3 3.33 10 8 1 1 0 0 0 0
..................................................................................................CGGTAACCAACGGAGGCTGGG.................................................. 21 0 3 3.00 9 8 1 0 0 0 0 0
................................................................................................................................TTCCCAACTGGACCGGAGTCCACATGC.............. 27 0 1 2.00 2 2 0 0 0 0 0 0
................................................................................................................................TTCCCAACTGGACCGGAGTCCACATG............... 26 0 17 1.59 27 25 0 0 2 0 0 0
.....................................................GCATTCCAGACTGCCTGGAGGAAG............................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................TCCAGACTGCCTGGAGGAAGCAGGAGGCCT.................................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................CGGTAACCAACGGAGGCTG.................................................... 19 0 3 0.67 2 2 0 0 0 0 0 0
.....................................................................................................TAACCAACGGAGGCTGGGACAGAGCAGT........................................ 28 0 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................TAACCAACGGAGGCTGGGACAGA............................................. 23 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TCCAACGGAGGCTGGGGCAGAGCAGT........................................ 26 2 2 0.50 1 0 1 0 0 0 0 0
......................................................................................TCATGAGCTCCACGGTAACCAACGG.......................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................TAACCAACGGAGGCTGGGGCAGAGCAGT........................................ 28 1 2 0.50 1 0 1 0 0 0 0 0
................................................................................................................................TTCCCAACTGGACCGGAGTCCACA................. 24 0 17 0.35 6 6 0 0 0 0 0 0
..................................................................................................CTGTAACCAACGGAGGCTGG................................................... 20 1 3 0.33 1 0 0 0 0 0 1 0
...................................................................................................GGTAACCAACGGAGGCTGGGACA............................................... 23 0 3 0.33 1 1 0 0 0 0 0 0
...................................................................................................GGTAACCAACGGAGGCTGGGA................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0
..............................................................................................TCCACGGTAACCAACGGAGGCTGGGA................................................. 26 0 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................ACGGTAACCAACGGAGGCTGGG.................................................. 22 0 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................CGGTAACCAACGGGGGCTGGGAC................................................ 23 1 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................TAACCAACGGAGGCTGGG.................................................. 18 0 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................CGGTAACCAACGGAGGCTGGA.................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0
...................................................................................................GGTAACCAACGGAGGCTGG................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................CGGTAACCAACGGACGCTGGGAC................................................ 23 1 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................TCCCAACTGGACCGGAGTCCACATG............... 25 0 19 0.32 6 6 0 0 0 0 0 0
...............ACGTACGCGGACTTCGATT....................................................................................................................................... 19 3 20 0.20 4 4 0 0 0 0 0 0
................................................................................................................................TTCCCAACTGGACCGGAGTCCACAT................ 25 0 17 0.18 3 3 0 0 0 0 0 0
.................................................................................................................................TCCCAACTGGACCGGAGTCCACA................. 23 0 19 0.16 3 3 0 0 0 0 0 0
.........................................CTCCATCCCGACGCATTCCAGACTGC...................................................................................................... 26 0 13 0.15 2 0 2 0 0 0 0 0
..........................................TCCATCCCGACGCATTCCAGACTG....................................................................................................... 24 0 14 0.14 2 2 0 0 0 0 0 0
............................................CATCCCGACGCATTCCAGACTGCC..................................................................................................... 24 0 14 0.14 2 2 0 0 0 0 0 0
..........................................TCCATCCCGACGCATTCCAGACTGCC..................................................................................................... 26 0 14 0.14 2 2 0 0 0 0 0 0
..............................................................ACAGTCTGGCGGAAGCAGGA....................................................................................... 20 3 12 0.08 1 1 0 0 0 0 0 0
..............................................TCCCGACGCATTCCAGACTGCCT.................................................................................................... 23 0 14 0.07 1 1 0 0 0 0 0 0
............................................CATCCCGACGCATTCCAGACTGCCT.................................................................................................... 25 0 14 0.07 1 1 0 0 0 0 0 0
............................................CATCCCGACGCATTCCAGACTGCCTA................................................................................................... 26 1 14 0.07 1 1 0 0 0 0 0 0
..........................................TCCATCCCGACGCATTCC............................................................................................................. 18 0 15 0.07 1 1 0 0 0 0 0 0
..............................................TTCCGACGCATTCCAGACTGCCT.................................................................................................... 23 1 15 0.07 1 1 0 0 0 0 0 0
............................................................................................................................GCAGTTCCCAACTGGACCGGAGTCCAC.................. 27 0 16 0.06 1 1 0 0 0 0 0 0
.........................................................................................................................AGAGCAGTTCCCAACTGGACCGGAG....................... 25 0 16 0.06 1 1 0 0 0 0 0 0
..............................................................................................................................AGTTCCCAACTGGACCGGAGTCC.................... 23 0 16 0.06 1 1 0 0 0 0 0 0
..............................................................................................................................AGTTCCCAACTGGACCGGAGTCCAAA................. 26 1 16 0.06 1 1 0 0 0 0 0 0
............................................................................................................................GCAGTTCCCAACTGGACCGGAGTC..................... 24 0 16 0.06 1 1 0 0 0 0 0 0
............................................................................................................................GCAGTTCCCAACTGGACCGGAGTCC.................... 25 0 16 0.06 1 1 0 0 0 0 0 0
................................................................................................................................TGCCCAACTGGACCGGAGTCCACATG............... 26 1 17 0.06 1 0 0 0 0 0 0 1
................................................................................................................................TTCCCAACTGGACCGGAGTCCA................... 22 0 17 0.06 1 1 0 0 0 0 0 0
................................................................................................................................TTCCCAACTGGACCGGAGTC..................... 20 0 17 0.06 1 1 0 0 0 0 0 0
.................................................................................................................................TCCCAACTGGACCGGAGTCCACATT............... 25 1 19 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................CCAACTGGACCGGAGTCCACATG............... 23 0 19 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................TCCCAACTGGACCGGAGTCCACATA............... 25 1 19 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................CCCAACTGGACCGGAGTCCACATG............... 24 0 19 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................TCCCAACTGGACCGCAGACAACATG............... 25 3 19 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CGTAATCCTTCCGGCTGCATGCGCCGGAAGCTCCCTTGCGCGAGGTAGGGCTGCGTAAGGTCTGACGGACCTCCTTCGTCCTCCGGAGTACTCGAGGTGCCATTGGTTGCCTCCGACCCTGTCTCGTCAAGGGTTGACCTGGCCTCAGGTGTACGGTCCTGGGTGCCTT
************************************((((((..(((((..((.((((....(((((((((.....(((...)))......))))).))))......)))))))))))..)))).))....************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 M022
male body		 GSM343916
embryo
 GSM444067
head
 M059
embryo
...................................................................................CGGAGTACTCGAGGTGCCATTGGTT............................................................. 25 0 2 18.00 36 19 8 1 6 1 0 0 1
..................................................................................CCGGATTACTCGAGGTGCCATTGGTT............................................................. 26 1 2 17.50 35 29 0 4 0 0 0 2 0
....................................................................................GGAGTACTCGAGGTGCCATTGGTT............................................................. 24 0 2 17.50 35 17 10 2 6 0 0 0 0
...................................................................................CGGATTACTCGAGGTGCCATTGGTT............................................................. 25 1 3 5.67 17 10 0 2 0 5 0 0 0
..................................................................................CCAGAGTACTCGAGGTGCCATAGGTT............................................................. 26 2 1 5.00 5 0 5 0 0 0 0 0 0
.........................................GAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 22 0 13 4.85 63 61 0 1 0 0 1 0 0
..................................................................................CCGGAGTACTCGAGGTGCCATTGGTT............................................................. 26 0 1 4.00 4 3 0 1 0 0 0 0 0
..........................................AGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 21 0 14 3.93 55 48 3 1 0 2 0 0 1
........................................CGAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 23 0 11 3.55 39 36 1 2 0 0 0 0 0
...................................................................................CGGAGTACTCGAGGTGCCATTGGT.............................................................. 24 0 2 2.50 5 5 0 0 0 0 0 0 0
.....................................................................................GAGTACTCGAGGTGCCATTGGTT............................................................. 23 0 2 2.50 5 5 0 0 0 0 0 0 0
......................................CGCGAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 25 0 11 2.27 25 23 0 1 1 0 0 0 0
..................................................................................CCGGATTACTCGAGGTGCCATTGGT.............................................................. 25 1 2 2.00 4 4 0 0 0 0 0 0 0
.................................................................................TCCGGATTACTCGAGGTGCCATTGGTT............................................................. 27 1 2 1.50 3 0 0 3 0 0 0 0 0
................................................................................CTCCGGATTACTCGAGGTGCCATTGGTT............................................................. 28 1 2 1.50 3 1 0 2 0 0 0 0 0
....................................................................................GGAGTACTCGAGGTGCCATTGGT.............................................................. 23 0 2 1.50 3 2 0 0 1 0 0 0 0
......................................CGCGAGGTAGGGCTGCGTAAGGT............................................................................................................ 23 0 11 1.09 12 10 2 0 0 0 0 0 0
...........................................GGTAGGGCTGCGTAAGGTCT.......................................................................................................... 20 0 14 1.07 15 14 0 0 0 0 1 0 0
.................................................................................TCCGGAGTACTCGAGGTGCCATTGGTT............................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................CTGACGGACCTCCTTCGTCCT....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................GCTGCGTAAGGTCTGACGGACCTCCT.............................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................GTACGGTCCTGGGTGCCTT 19 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................TGCGCGAGGTAGGGCTGCGTAAG.............................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................TGCGCGAGGTAGGGCTGCGTAAGGT............................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................TCTGGCGGACATACTTCGTCCTC...................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1 0 0
..................................................................................CCGGAGTACTCGAGGTGCCATTGGT.............................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................GGTTGACCTGGCCTCAGGTGTACGGTC........... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................CGTAAGGTCTGACGGACCTCCT.............................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................CAAGGGTTGACCTGGCCTCAGGTGT................. 25 0 17 0.76 13 11 0 0 0 0 2 0 0
.......................................GCGAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 24 0 11 0.73 8 7 1 0 0 0 0 0 0
........................................CGAGGTAGGGCTGCGTAAGGT............................................................................................................ 21 0 11 0.64 7 6 1 0 0 0 0 0 0
....................................................................................AGAGTACTCGAGGTGCCATAGGTT............................................................. 24 2 2 0.50 1 0 1 0 0 0 0 0 0
....................................................................................AGAGTACTCGAGGTGCCATAGGT.............................................................. 23 2 2 0.50 1 0 1 0 0 0 0 0 0
............................................GTAGGGCTGCGTAAGGTCT.......................................................................................................... 19 0 14 0.50 7 7 0 0 0 0 0 0 0
................................................................................CTCCGGATTACTCGAGGTGCCATTGGT.............................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................CGGAGTACTCGGGGTGCCATTGGTT............................................................. 25 1 2 0.50 1 0 0 0 1 0 0 0 0
...............................................................................................................TCCGACCCTGTCTCGTCAAGGGT................................... 23 0 16 0.50 8 8 0 0 0 0 0 0 0
......................................................................................AGTACTCGAGGTGCCATTGGTT............................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0
...................................................................................CAGAGTACTCGAGGTGCCATAGGTT............................................................. 25 2 2 0.50 1 0 1 0 0 0 0 0 0
..................................................................................CCGGATTACTCGAGGTGCCATTGG............................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................ACGGAGTACTCGAGGTGCCATTGGT.............................................................. 25 1 2 0.50 1 1 0 0 0 0 0 0 0
................................................................................................................................AAGGGTTGACCTGGCCTCAGGTGT................. 24 0 17 0.41 7 7 0 0 0 0 0 0 0
.....................................................................................................................CCTGTCTCGTCAAGGGTTGACCT............................. 23 0 17 0.41 7 1 0 2 4 0 0 0 0
.........................................GAGGTAGGGCTGCGTAAGGT............................................................................................................ 20 0 13 0.38 5 5 0 0 0 0 0 0 0
........................................TGAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 23 1 13 0.38 5 5 0 0 0 0 0 0 0
..............................................................................................................CTCCGACCCTGTCTCGTCAAGGGT................................... 24 0 16 0.38 6 6 0 0 0 0 0 0 0
........................................CGAGGTAGGGCTGCGTAAGGTCTG......................................................................................................... 24 0 11 0.36 4 1 0 0 3 0 0 0 0
......................................CGCGAGGTAGGGCTGCGTAAGGTC........................................................................................................... 24 0 11 0.36 4 4 0 0 0 0 0 0 0
.............................................................................................................CCTCCGACCCTGTCTCGTCAAGGGT................................... 25 0 14 0.36 5 5 0 0 0 0 0 0 0
...................................................................................TGGAGTACTCGAGGTGCCATTGGTT............................................................. 25 1 3 0.33 1 0 0 0 0 0 1 0 0
...................................................................................CGGATTACTCGAGGTGCCATTGGTTGC........................................................... 27 1 3 0.33 1 1 0 0 0 0 0 0 0
.................................................................................................TGCCATTGGTTGCCTCCGACCCTGT............................................... 25 0 3 0.33 1 0 0 1 0 0 0 0 0
...................................................................................................ACATTGGTTGCCTCCGACCCTGT............................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0
...................................................................................CGGATTACTCGAGGTGCCATTGGT.............................................................. 24 1 3 0.33 1 1 0 0 0 0 0 0 0
.........................................GAGGTAGGGCTGCGTAAGGTCTG......................................................................................................... 23 0 13 0.31 4 4 0 0 0 0 0 0 0
.......................................GCGAGGTAGGGCTGCGTAAGGTC........................................................................................................... 23 0 11 0.27 3 1 0 0 2 0 0 0 0
................................CACTTGTGCGAGGTAGGG....................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
.........................................GAGGTAGGGCTGCGTAAGGTC........................................................................................................... 21 0 13 0.23 3 3 0 0 0 0 0 0 0
.............................................TAGGGCTGCGTAAGGTCT.......................................................................................................... 18 0 14 0.21 3 3 0 0 0 0 0 0 0
.............................................................................................................CCTCCGACCCTGTCTCGTCAAGGG.................................... 24 0 14 0.21 3 3 0 0 0 0 0 0 0
..........................................AGGTAGGGCTGCGTAAGGT............................................................................................................ 19 0 14 0.21 3 2 1 0 0 0 0 0 0
............................................................................................................................CGTCAAGGGTTGACCTGGCCTCAGGTGT................. 28 0 16 0.19 3 3 0 0 0 0 0 0 0
......................................TGCGAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 25 1 11 0.18 2 2 0 0 0 0 0 0 0
.................................................................................................................CGACCCTGTCTCGTCAAGGGT................................... 21 0 17 0.18 3 3 0 0 0 0 0 0 0
..........................................AGGTAGGGCTTCGTAAGGTCT.......................................................................................................... 21 1 14 0.14 2 1 0 0 0 1 0 0 0
..........................................AGGTAGGGCTGCGTAAGGTC........................................................................................................... 20 0 14 0.14 2 2 0 0 0 0 0 0 0
............................................GTAGGGCTGCGTAAGGTCTG......................................................................................................... 20 0 14 0.14 2 2 0 0 0 0 0 0 0
...............................................................................................................CCCGACCCTGTCTCGTCAAGGGT................................... 23 1 16 0.13 2 1 0 0 0 0 0 0 1
..............................................................................................................................TCAAGGGTTGACCTGGCCTCAGGTGT................. 26 0 16 0.13 2 0 0 0 2 0 0 0 0
................................................................................................................CCGACCCTGTCTCGTCAAGGGT................................... 22 0 16 0.13 2 2 0 0 0 0 0 0 0
...............................................................................................................................CAAGGGTTGACCTGGCCTCAGGTG.................. 24 0 17 0.12 2 2 0 0 0 0 0 0 0
..................................................................................................................GACCCTGTCTCGTCAAGGGTTGACCT............................. 26 0 17 0.12 2 2 0 0 0 0 0 0 0
.......................................................................................................................TGTCTCGTCAAGGGTTGACCT............................. 21 0 17 0.12 2 0 0 0 2 0 0 0 0
....................................................................................................................CCCTGTCTCGTCAAGGGTTGACCT............................. 24 0 17 0.12 2 2 0 0 0 0 0 0 0
.................................................................................................................CGACCCTGTCTCGTCAAGGGTTGACCT............................. 27 0 17 0.12 2 2 0 0 0 0 0 0 0
....................................................................................................CAGTGGTTTCGTCCGACCCT................................................. 20 3 10 0.10 1 0 0 0 0 0 1 0 0
......................................CGCGAGGTAGGACTGCGTAAGGTCT.......................................................................................................... 25 1 11 0.09 1 0 0 0 0 0 1 0 0
........................................CGAGGTAGGGCTGCGTAAGGTC........................................................................................................... 22 0 11 0.09 1 1 0 0 0 0 0 0 0
........................................CGAGGTAGGGCTTCGTAGGGTCT.......................................................................................................... 23 2 11 0.09 1 1 0 0 0 0 0 0 0
......................................CTCGAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 25 1 11 0.09 1 0 0 1 0 0 0 0 0
....................................TCCGCGAGCTAGGGCTGCGTAAGGT............................................................................................................ 25 2 11 0.09 1 0 0 0 0 0 1 0 0
.................................................................................TCCGGAGTACTCGAGGTGCCATTTGTT............................................................. 27 1 12 0.08 1 0 0 0 0 0 0 0 1
......................................CGCGAGGTAGGGCTGCGTAAG.............................................................................................................. 21 0 12 0.08 1 1 0 0 0 0 0 0 0
.......................................GCGAGGTAGGGCTGCGTAAG.............................................................................................................. 20 0 12 0.08 1 1 0 0 0 0 0 0 0
........................................TGAGGTAGGGCTGCGTAAGGT............................................................................................................ 21 1 13 0.08 1 1 0 0 0 0 0 0 0
...........................................................................................................TGCCTCCGACCCTGTCTCGTCAAGGGC................................... 27 1 13 0.08 1 0 0 0 1 0 0 0 0
.........................................GAGGTAGGGCCGCGTAAGGT............................................................................................................ 20 1 13 0.08 1 1 0 0 0 0 0 0 0
............................................................................................................GCCTCCGACCCTGTCTCGTCAAGGGT................................... 26 0 13 0.08 1 1 0 0 0 0 0 0 0
.........................................GAGGTAGGGCTTCGTAAGGTC........................................................................................................... 21 1 13 0.08 1 1 0 0 0 0 0 0 0
..................................................................................CCGGAGTACTCGAGGTGCCATTTGTT............................................................. 26 1 13 0.08 1 0 0 0 0 0 0 0 1
............................................................................................................GCCTCCGACCCTGTCTCGTCAAGGGTT.................................. 27 0 13 0.08 1 1 0 0 0 0 0 0 0
............................................................................................................GCCTCCGACCCTGTCTCGTCA........................................ 21 0 13 0.08 1 1 0 0 0 0 0 0 0
.........................................GAGGTAGGGCTTCGTAAGGTCT.......................................................................................................... 22 1 13 0.08 1 0 0 1 0 0 0 0 0
............................................GTAGGGCTGCGTAAGGTCTGAC....................................................................................................... 22 0 14 0.07 1 1 0 0 0 0 0 0 0
............................................................................................................GTCTCCGACCCTGTCTCGTCGAGGGT................................... 26 2 14 0.07 1 1 0 0 0 0 0 0 0
.........................................TTTGTAGGGCTGCGTAAGGTCT.......................................................................................................... 22 3 14 0.07 1 1 0 0 0 0 0 0 0
...................................................................................CGGAGTACTCCAGGTGCCAT.................................................................. 20 1 14 0.07 1 1 0 0 0 0 0 0 0
...................................................................................CGGAGTACTCCAGGTGCCATT................................................................. 21 1 14 0.07 1 1 0 0 0 0 0 0 0
.........................................AAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 22 1 14 0.07 1 1 0 0 0 0 0 0 0
.........................................AAGGTAGGGCTGCGTAAGGT............................................................................................................ 20 1 14 0.07 1 0 0 0 0 0 1 0 0
.........................................TAGGTAGGGCTGCGTAAGGTCT.......................................................................................................... 22 1 14 0.07 1 1 0 0 0 0 0 0 0
...................................................................................CGGAGTACTCGAGGTGCC.................................................................... 18 0 14 0.07 1 1 0 0 0 0 0 0 0
..........................................AGGTAGGGCTGCGTAAGGTCTG......................................................................................................... 22 0 14 0.07 1 1 0 0 0 0 0 0 0
...............................................GGGCTGCGTAAGGTCTGAC....................................................................................................... 19 0 14 0.07 1 1 0 0 0 0 0 0 0
..........................................AGGTAGGGCTGCGTAAGGTCTC......................................................................................................... 22 1 14 0.07 1 1 0 0 0 0 0 0 0
.........................................GAGGTAGGGCTGCGTAAAGTCT.......................................................................................................... 22 1 14 0.07 1 1 0 0 0 0 0 0 0
..........................................AGGTACGGCTGCGTAAGGTCT.......................................................................................................... 21 1 15 0.07 1 1 0 0 0 0 0 0 0
............................................................................................................................CGTCAAGGGTTGACCTGGCCTCA...................... 23 0 16 0.06 1 1 0 0 0 0 0 0 0
..............................................................................................................................TCAAGGGTTGACCTGGCCT........................ 19 0 16 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................CCCGACCCTGTCTCGTCAAGGGTT.................................. 24 1 16 0.06 1 0 0 0 0 0 0 0 1
.........................................................................................................................TCTCGTCAAGGGTTGACCTGGCCT........................ 24 0 16 0.06 1 1 0 0 0 0 0 0 0
......................................................................................................................CTGTCTCGTCAAGGGTTGACCTGGCCT........................ 27 0 16 0.06 1 1 0 0 0 0 0 0 0
................................................................................................................CCGACCCTGTCTCGTCAAGGGTTGACCT............................. 28 0 16 0.06 1 1 0 0 0 0 0 0 0
....................................................................................................................CCCTGTCTCGTCAAGGGTTGACCTGGTA......................... 28 2 16 0.06 1 1 0 0 0 0 0 0 0
..............................................................................................................................TCAAGGGTTGACCTGGCCTCAGGT................... 24 0 16 0.06 1 0 0 1 0 0 0 0 0
........................................................................................................................GTCTCGTCAAGGGTTGACCTGGCCT........................ 25 0 16 0.06 1 1 0 0 0 0 0 0 0
.........................................................................................................................TCTCGTCAAGGGTTGACCTGGCCTC....................... 25 0 16 0.06 1 1 0 0 0 0 0 0 0
.....................................................................................................................CCTGTCTCGTCAAGGGTTGACC.............................. 22 0 17 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................ACCCTGTCTCGTCAAGGGTTGACC.............................. 24 0 17 0.06 1 1 0 0 0 0 0 0 0
......................................................................................................................CTGTCTCGTCAAGGGTTGACCT............................. 22 0 17 0.06 1 1 0 0 0 0 0 0 0
......................................................................................................................CTGTCTCGTCAAGGGTTGACC.............................. 21 0 17 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................ACCCTGTCTCGTCAAGGGTTGAC............................... 23 0 17 0.06 1 1 0 0 0 0 0 0 0
...................................................................................................................ACCCTGTCTCGTCAAGGGTTGACCT............................. 25 0 17 0.06 1 1 0 0 0 0 0 0 0
.................................................................................................................CGACCCTGTCTCGTCAAGGGTT.................................. 22 0 17 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................................CACGGGTTGACCTGGCCTCAGGTGT................. 25 1 17 0.06 1 0 0 0 0 0 1 0 0
...................................................................................................................AAACTGTCTCGTCAAGGGTTGACCT............................. 25 2 17 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................................TAAGGGTTGACCTGGCCTCAGGTGT................. 25 1 17 0.06 1 0 0 0 0 0 0 0 1
...............................................................................................................................CAAGGGTTGACCTGGCCTCAGGTGTAC............... 27 0 17 0.06 1 1 0 0 0 0 0 0 0
........................................................................................................................GTCTCGTCAAGGGTTGACCT............................. 20 0 18 0.06 1 1 0 0 0 0 0 0 0
................................................GACTGCGTGAGATCTGACGG..................................................................................................... 20 3 19 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................GGGTTGACCTGGCCTCAGGTGTAC............... 24 0 19 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................GGGTTGACCTGGCCTCAGGTGT................. 22 0 19 0.05 1 1 0 0 0 0 0 0 0
.........................................GAGGTATGGATGTGTAAGGT............................................................................................................ 20 3 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_23:13998-14166 + dps_138 GCATTAGGAAGGCCGACGTACGCGG---CCTTCGAGGGAACGCGCTCCATCCCGACGCATTCCAGACTGCCT---GGAGGAAGCAGGAGGCCTCATGAGCTCCACGGTAACCAACGGAGGCTGGGACAGAGCAGTT-CCCAACTGGACCGGAGTCCACATGCCAGGACCCACGGAA
droPer2 scaffold_55:456839-457007 + GCATTAGGAAGGCCGACGTACGCGG---CCTTCGAGGGAACGCGCTCCATCCCGACGCATTCCAGACTGCCT---GGAGGAAGCAGGAGCCCTCATGAGCTCCACGGTAACCAACGGAGGCTGGGACAGAGCAGTT-CCCAACTGGACCGGAGTCCACATGCCAGGACCCACGGAA
droBia1 scf7180000301504:8550-8714 + ACATCGGAAAATATAATGTATGTTACCGCCATTGAGTGAGCGCGTTTTATAGTAACCCATCCCGGAGCAGCTTTCGGCG-------GAACCATGGTGAATTCTACGTTCTATAAAGGAAG----AATGGAGCGATTATCCTACGGGACCGCAAGCTATCATCCCGGGCAATTGAAG
droTak1 scf7180000412698:1777-1941 + GCATCGGGAAATATGATGTATGTTACCGCTGATGAGGGAGCGCGTTTTAGCGTAACGCATCCCGGAGCAGCTTTCGGAG-------GAACCATGGTGAATTCTACGTTCTATAAAGGAGG----AACGGAGCGATTAGCCTACGGGACCGCAAGTTATCATCCCGGGCAATTGGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCATTAGGAAGGCCGACGTACGCGG---CCTTCGAGGGAACGCGCTCCATCCCGACGCATTCCAGACTGCCT---GGAGGAAGCAGGAGGCCTCATGAGCTCCACGGTAACCAACGGAGGCTGGGACAGAGCAGTT-CCCAACTGGACCGGAGTCCACATGCCAGGACCCACGGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................CGGTAACCAACGGAGGCTGGGAC.................................................2338.672621901001210
........................................................................................................CGGTAACCAACGGAGGCTGGGA..................................................2234.67140900002120
........................................................................................................CGGTAACCAACGGAGGCTGGGACA................................................2434.001211100000000
........................................................................................................CGGTAACCAACGGAGGCTGG....................................................2033.33100800001010
........................................................................................................CGGTAACCAACGGAGGCTGGG...................................................2133.0090800000010
......................................................................................................................................TT-CCCAACTGGACCGGAGTCCACATGC..............2712.0020200000000
......................................................................................................................................TT-CCCAACTGGACCGGAGTCCACATG...............26171.592702500000200
........................................................GCATTCCAGACTGCCT---GGAGGAAG.............................................................................................2411.0010100000000
............................................................TCCAGACTGCCT---GGAGGAAGCAGGAGGCCT...................................................................................3011.0010000000010
........................................................................................................CGGTAACCAACGGAGGCTG.....................................................1930.6720200000000
...........................................................................................................TAACCAACGGAGGCTGGGACAGAGCAGT.........................................2820.5010000000010
...........................................................................................................TAACCAACGGAGGCTGGGACAGA..............................................2320.5010100000000
............................................................................................TCATGAGCTCCACGGTAACCAACGG...........................................................2520.5010100000000
......................................................................................................................................TT-CCCAACTGGACCGGAGTCCACA.................24170.3560600000000
.........................................................................................................GGTAACCAACGGAGGCTGGGACA................................................2330.3310100000000
.........................................................................................................GGTAACCAACGGAGGCTGGGA..................................................2130.3310100000000
....................................................................................................TCCACGGTAACCAACGGAGGCTGGGA..................................................2630.3310100000000
.......................................................................................................ACGGTAACCAACGGAGGCTGGG...................................................2230.3310100000000
...........................................................................................................TAACCAACGGAGGCTGGG...................................................1830.3310100000000
........................................................................................................CGGTAACCAACGGAGGCTGGA...................................................2130.3310100000000
.........................................................................................................GGTAACCAACGGAGGCTGG....................................................1930.3310100000000
.......................................................................................................................................T-CCCAACTGGACCGGAGTCCACATG...............25190.3260600000000
......................................................................................................................................TT-CCCAACTGGACCGGAGTCCACAT................25170.1830300000000
.......................................................................................................................................T-CCCAACTGGACCGGAGTCCACA.................23190.1630300000000
............................................CTCCATCCCGACGCATTCCAGACTGC..........................................................................................................26130.1520000000020
.............................................TCCATCCCGACGCATTCCAGACTG...........................................................................................................24140.1420200000000
...............................................CATCCCGACGCATTCCAGACTGCC.........................................................................................................24140.1420200000000
.............................................TCCATCCCGACGCATTCCAGACTGCC.........................................................................................................26140.1420200000000
.................................................TCCCGACGCATTCCAGACTGCCT---.....................................................................................................23140.0710100000000
...............................................CATCCCGACGCATTCCAGACTGCCT---.....................................................................................................25140.0710100000000
...............................................CATCCCGACGCATTCCAGACTGCCT---A....................................................................................................26140.0710100000000
.............................................TCCATCCCGACGCATTCC.................................................................................................................18150.0710100000000
..................................................................................................................................GCAGTT-CCCAACTGGACCGGAGTCCAC..................27160.0610100000000
...............................................................................................................................AGAGCAGTT-CCCAACTGGACCGGAG.......................25160.0610100000000
....................................................................................................................................AGTT-CCCAACTGGACCGGAGTCC....................23160.0610100000000
..................................................................................................................................GCAGTT-CCCAACTGGACCGGAGTC.....................24160.0610100000000
..................................................................................................................................GCAGTT-CCCAACTGGACCGGAGTCC....................25160.0610100000000
......................................................................................................................................TT-CCCAACTGGACCGGAGTCCA...................22170.0610100000000
......................................................................................................................................TT-CCCAACTGGACCGGAGTC.....................20170.0610100000000
.......................................................................................................................................T-CCCAACTGGACCGGAGTCCACATT...............25190.0510100000000
..........................................................................................................................................CCAACTGGACCGGAGTCCACATG...............23190.0510100000000
.......................................................................................................................................T-CCCAACTGGACCGGAGTCCACATA...............25190.0510100000000
.........................................................................................................................................CCCAACTGGACCGGAGTCCACATG...............24190.0510100000000
droPer2
GCATTAGGAAGGCCGACGTACGCGG---CCTTCGAGGGAACGCGCTCCATCCCGACGCATTCCAGACTGCCT---GGAGGAAGCAGGAGCCCTCATGAGCTCCACGGTAACCAACGGAGGCTGGGACAGAGCAGTT-CCCAACTGGACCGGAGTCCACATGCCAGGACCCACGGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................T-CCCAACTGGACCGGAGTCCACATGCCA............2811.001010000
........................................................................................................CGGTAACCAACGGAGGCTGGGA..................................................22130.628080000
........................................................................................................CGGTAACCAACGGAGGCTGGGAC.................................................23120.506050001
........................................................................................................CGGTAACCAACGGAGGCTGGGACA................................................24120.253030000
........................................................................................................CGGTAACCAACGGAGGCTGGGACAG...............................................25120.172020000
........................................................................................................CGGTAACCAACGGAGGCTGG....................................................20140.142020000
............................................................................................................AACCAACGGAGGCTGGGAC.................................................19120.081010000
.........................................................................................................GGTAACCAACGGAGGCTGGGA..................................................21130.081010000
..........................................................................................................GTAACCAACGGAGGCTGGGA..................................................20130.081000001
........................................................................................................CGGTAACCAACGGAGGCTGGGAA.................................................23140.071010000
........................................................................................................CGGTAACCAACGGAGGCTGGG...................................................21140.071010000
GCATTAGGAAGGCCGACGTACG..........................................................................................................................................................22200.051010000
..................................................................................................................................GCAGTT-CCCAACTGGACCGGAGTC.....................24200.051010000
......................................................................................................................................TT-CCCAACTGGACCGGAGT......................19200.051010000
droBia1
ACATCGGAAAATATAATGTATGTTACCGCCATTGAGTGAGCGCGTTTTATAGTAACCCATCCCGGAGCAGCTTTCGGCG-------GAACCATGGTGAATTCTACGTTCTATAAAGGAAG----AATGGAGCGATTATCCTACGGGACCGCAAGCTATCATCCCGGGCAATTGAAGSizeHit CountTotal NormTotal
No Reads
droTak1
GCATCGGGAAATATGATGTATGTTACCGCTGATGAGGGAGCGCGTTTTAGCGTAACGCATCCCGGAGCAGCTTTCGGAG-------GAACCATGGTGAATTCTACGTTCTATAAAGGAGG----AACGGAGCGATTAGCCTACGGGACCGCAAGTTATCATCCCGGGCAATTGGAGSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:40 PM