ID:

dps_1367

 Coordinate:

4_group1:1849463-1849761 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-60.5 -60.3 -60.3

Flybase annnotation

exon [dpse_GLEANR_16687:10]; exon [dpse_GLEANR_16687:11]; CDS [Dpse\GA20137-cds]; CDS [Dpse\GA20137-cds]; intron [Dpse\GA20137-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATACCGGGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCGCGGGCCCAGCTGCCGCTGCCATTGCCGCCCGGCCAATGCACTGCAGCTGCAGCAACAACAACAACAACAACAGCAAGCTCTCTCTCCGCNTCAGAAAAAAAAAACGTTCTATGCGCCGAAAGGTGCGTGTCCCCCCCAAAGAGAGCCCAGAGATCCCGTAGATTCCTGTAGAGCCCTATCCCTTATCTCTGTCTAGCTCTCTCGCTCTCTTTACCCCGTTCTTCCACCAAATTTAATTTGTCGTTTTTCTTTTCGTTTGCGAAACGCTACGCTGAAATTCCACCACAGAATTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACACCACC
********************************************************.((((.((((...(((((.((((((((((((....)).)))))....))))).))))).......................(((((((..........(((..........)))((((((((....))))))))..........))))))).(((((((...((((.(((.....)))..)))).....)))))))....))))...))))..********************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
 SRR902010
ovaries
.........................................................................................................................................................................................................................................................CTGTCTAGCTCTCTCGCTCT.................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
...............TGGTGGTGGTGTGCAGGCGGCCA......................................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
.............ATTGGTGGTGGTGTGCAGGCGGCC.......................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................TGGCGCGGGCCCAGCTGCCGC.................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................................................................................................TTAATTTGTCGTTTTTTTTT...................................................................................... 20 1 2 0.50 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................TTTAATTTGTCGTTTTTTT........................................................................................ 19 1 2 0.50 1 1 0 0 0
.........................ATTCAGGCGGCCATTGGCAGC................................................................................................................................................................................................................................................................................................................................................................. 21 3 3 0.33 1 1 0 0 0
..TACCGGGGTCCACTGATGGTG........................................................................................................................................................................................................................................................................................................................................................................................ 21 3 4 0.25 1 0 0 1 0
.............................................................................................................................................................................................................................................TATCCCTTATCTCGGTATTG.............................................................................................................................................. 20 3 7 0.14 1 1 0 0 0
..................................................GTGCGGTGGCGCGGCCCC........................................................................................................................................................................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0
..................................................................................................................AACAACAACAGCAACAACAGCAAGATC.................................................................................................................................................................................................................................................................. 27 2 16 0.06 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................AAATTTAATGTGTCGTTTGTT......................................................................................... 21 3 16 0.06 1 1 0 0 0
.............................................TGGCAGTGTGGTGCCGCGGG.............................................................................................................................................................................................................................................................................................................................................. 20 3 17 0.06 1 0 0 1 0
......................................................................................................................................................................................................................................................................................CTGCTTCCACCAAATATAAT..................................................................................................... 20 3 19 0.05 1 1 0 0 0
..........................................................................................................................................................................................................................................................TGTTTAGCTCTCTTGCTC................................................................................................................................... 18 2 20 0.05 1 0 1 0 0
.......................................................................................GCCCGGCCGATGCACC........................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1

Anti-sense strand reads

CTATGGCCCAAGGTAACCACCACCACACGTCCGCCGGTAATCGTCGCCGCCACACCACCGCGCCCGGGTCGACGGCGACGGTAACGGCGGGCCGGTTACGTGACGTCGACGTCGTTGTTGTTGTTGTTGTTGTCGTTCGAGAGAGAGGCGNAGTCTTTTTTTTTTGCAAGATACGCGGCTTTCCACGCACAGGGGGGGTTTCTCTCGGGTCTCTAGGGCATCTAAGGACATCTCGGGATAGGGAATAGAGACAGATCGAGAGAGCGAGAGAAATGGGGCAAGAAGGTGGTTTAAATTAAACAGCAAAAAGAAAAGCAAACGCTTTGCGATGCGACTTTAAGGTGGTGTCTTAATGGTGGTGCGTTATTCAGGGCGAGTAGTGCATGGTTGTTGTGGTGG
**********************************************************************************************************************************.((((.((((...(((((.((((((((((((....)).)))))....))))).))))).......................(((((((..........(((..........)))((((((((....))))))))..........))))))).(((((((...((((.(((.....)))..)))).....)))))))....))))...))))..******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M022
male body		 GSM444067
head
 SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................TATCTCGGGATAGGGAAG......................................................................................................................................................... 18 2 3 15.67 47 44 1 2 0 0
.....................................................................................................................................................................................................................................ATCTCGGGATAGGGAAGT........................................................................................................................................................ 18 2 2 14.00 28 26 1 1 0 0
......................................................................................................................................................................................................................................TCTCGGGATAGGGAATTT....................................................................................................................................................... 18 2 3 10.00 30 26 2 2 0 0
.................................................................................................................................................................................................................................GGGTATCTCGGGATAGGGAA.......................................................................................................................................................... 20 2 1 9.00 9 3 3 3 0 0
................................................................................................................................................................................................................................TGGGTATCTCGGGATAGGGAA.......................................................................................................................................................... 21 3 2 5.50 11 3 8 0 0 0
...................................................................................................................................................................................................................................GTATCTCGGGATAGGGAA.......................................................................................................................................................... 18 2 3 5.33 16 15 1 0 0 0
..................................................................................................................................................................................................................................GGTATCTCGGGATAGGGAA.......................................................................................................................................................... 19 2 1 4.00 4 3 1 0 0 0
..................................................................................................................................................................................................................................GGTATCTCGGGATAGGGAAG......................................................................................................................................................... 20 3 6 3.17 19 9 10 0 0 0
.................................................................................................................................................................................................................................GGGTATCTCGGGATAGGGAAG......................................................................................................................................................... 21 3 1 3.00 3 0 2 1 0 0
........................................................................................................................................................................................................................GGCATTTAAGGACAACTCGGG.................................................................................................................................................................. 21 2 1 2.00 2 2 0 0 0 0
........................................................................................................................................................................................................................................TCCGTATAGGGAATAGAGCCA.................................................................................................................................................. 21 3 2 1.00 2 0 2 0 0 0
...............................................................................................................................................................................................................................ATGGGTATCTCGGGATAGGGAA.......................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................CTCTAGGGCATCTAAGGACAT........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................TATCTCGGGATAGGGAAGT........................................................................................................................................................ 19 3 18 1.00 18 10 8 0 0 0
........................................................ACCGGGCCCGGGTCGACGGC................................................................................................................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0
..................................................................................................................................................................................................................................GGTATCTCGGGATAGGGA........................................................................................................................................................... 18 2 3 0.67 2 2 0 0 0 0
.....................................................................................................................................................................................................................................ATCTCGGGATAGGGAAGTT....................................................................................................................................................... 19 3 17 0.53 9 7 2 0 0 0
......................................................................................................................................................................................................................................TCTCGGGATAGGGAATTTT...................................................................................................................................................... 19 3 20 0.40 8 8 0 0 0 0
.................................................................................................................................................................................................................................GGGTATCTCGGGATAGGG............................................................................................................................................................ 18 2 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................................................TGGGTATCTCGGGATAGGGA........................................................................................................................................................... 20 3 8 0.25 2 2 0 0 0 0
..............................................................................CGGTAAAGGCGGTCAGGTTA............................................................................................................................................................................................................................................................................................................. 20 3 9 0.22 2 0 0 0 0 2
......................................................................................................................................................................................................................................TCTCGGGATAGGGAAGAC....................................................................................................................................................... 18 2 5 0.20 1 1 0 0 0 0
.....................................................................................................................................................................................................................................ATCTCGGGATAGGGAAGG........................................................................................................................................................ 18 2 5 0.20 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................TCTTAATAGGGGTGCGTT.................................. 18 2 7 0.14 1 1 0 0 0 0
...........................................................................................CCGGATAAGTGACGCCGAC................................................................................................................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 2 0
..........................................................................................................................................................................................................................................................................................AAGGAGGTTTCAATTAAATAG................................................................................................ 21 3 10 0.10 1 1 0 0 0 0
.................................................................................................................................................................................................................................GGGTATTTCGGGATAGGGAA.......................................................................................................................................................... 20 3 11 0.09 1 0 1 0 0 0
......................................................................................................................................................................................................................................TCTCGGGATAGGGAAGATAC..................................................................................................................................................... 20 3 12 0.08 1 1 0 0 0 0
......................................................................................................................................................................................................................................TCTCGGGATAGGGAAGGG....................................................................................................................................................... 18 2 13 0.08 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................CCGCTTTGCGATGCAATT............................................................... 18 3 20 0.05 1 1 0 0 0 0
................................................................................GTAACGGCGGGCCGCGTAG............................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:1849413-1849811 - dps_1367 GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCGCGGGCCCAGCTGCCGCTGCCATTGCCGCCCGGCCAATGCACTGCAG---C---TG------CAGCAACAA------CA------------AC------------AACAACAACAGCA---A------GCTCTCTCTCCGCNTCAGAAAA------------------AAAAAACGTTCTATGCGCCGAAAGGTGCGTGTCCCCCC---------------------------------------------------C------------------AAAG--------------------------AGAGCCC-AGAGA-TC------------------------CCGTAGATTCCTGTAGAGCCCTATCCCTTATCTCTGTCT---AGCTC------------T-------CTCGCTC-------TCTTT---------------------------------A-CC----CCGT---------TC---------------------------------------------------TTCCAC--CA------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACG--------------------------C-T-GA-----AATTCCACCACAGAATTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCACC---------
droPer2 scaffold_5:3355939-3356338 + GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCGCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GGCCAATGCACTGCAG---C---TG------CAGCAACAA------CA------------AC------------AACAACAACAGCA---A------GCACTCTCACCGCAACAGC---CA---------------CAGCCAGCGTTCTATGCGCCGAAAGGTGCGTGTCCCCCCCCC------------------------------------------------C------------------AAAG--------------------------AGAGCCC-AGAGA-TC------------------------CCGTAGATTCCTGTAGAGCCCTATCCTTTATCTCTGTCT---AGCTC------------T-------CTCGCTC-------TTTT----------------------------------A-CC----CCGT---------TC---------------------------------------------------TTCCAC--CA------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACG--------------------------C-T-GA-----AATTCCCCCACAGAATTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCACC---------
droWil2 scf2_1100000004585:824020-824473 - GGCACCG-CCAGTTACAGGTTCACTGGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGCGTTGTGGCTCGCGCCCAGCTGCCGTTGCCATTGCCGCC-GGCTAATGCAC------------TGCAACAGCAACAACAA------------------------------------------------CAA------GCACTCTCTCCGCAACAACAAC------------------AGACAGCGTTCTATACCCCGAAAGGTGTGTGTCCCTCCC---------TTATCTTGACTCCCCTTAATCCAAC------------TT--AGAGCAGAAACC------CAGTT--------------------------TGGATTT-TG-TT-TTGTAGTTT-----T------------------------------------------------------------------------------CTCAA-----------------------------------------TT----T-CC----ATCC---------TTTTACCATCCACACCCTCCCCCAAACACATACACACACACACACACACATC-TTCCAC--CA------AAT---------TTAATTTTGTCCAT-TT-TTCTTTA-------TCG------TT-TG---------------------------------------------------------------------CAAAATCAA---AC---CAAAAACCAAAATAAAAA---CCG-AA-----AACT------CAGACTTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCACC---------
droVir3 scaffold_12723:5202548-5202978 - dvi_1748 GGGCGTG----------GGTGCCATTGGTGGTGGTGTGCAGGCGGCCATCAGCAGCGGCGGCGTTGTGGCGCGTGCTCAGCTGCCGCTGCCGTTGCCGCC-GGCAAATGCACAGCAG---CA---GCAACAGCAACAACAA------CAA---------CAAC------------AACAACAACAACAACAA------GTACTCTCACCGCAACAACAACC------------------GCAAGCGTTTTATGCGCCGAAAGGTGCGTGTCCCACTCGCCTA-GGG-TCTTC-----------------------------------CAAGTAG---TC------CAGCG--------------------------CGAGCT-----------------------------------------------------------------------------GCTGTTT-----CGAAT-----------------------------------------------------------C-CC----ATAT---------TG---------------------------------------------------TTTCA---CGAACACACATTT--AATTTGTAAT-TTGTC-GT-TT-TTCTTTT-------TCGTT----TT-TG------------------------------------------TGTTTTTG----------TTTCTCTTTCAAAATGCTCAAAAAAAAAAACACCAACAAAAACA---ACAAAA-----ATTT------TAGAATTACCACCGCGCAATAAGTCCCGCTCATCGCGTACCAACAACA---ACACC---------
droMoj3 scaffold_6500:16485832-16486306 + GGGCGTGGGT-------GGTGCTATGGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGTGGTGTGGTGGCGCGTGCGCAGCTGCCACTGCCATTGCTGCC-GGCAACTGCACAGCAA---CAA---------C---------------------------------------------AACAACAACAACAA------GCACTCTCACCGCAACAACAACAACAACAACAACAACAGCCGCAAGCGTTCTATGCGCCGAAAGGTGCGTCTGCCACTCCA------------------------------------------------C-------------------GAG--------------------------AGTGTTC-TATGC-CAGTAGTTCCCCAATGC-CA-----G----------------------------------AGAGC---TGCTGTTT-----AGTTT-------CTCATAT-------TTGTT---------------------------------T-CA----CTGAACTACTAAA---------------------------------------------------------G---CAAACACACATTT--AATTTCTATT-TTGAC-CTATTTTTCTTTT-------TCCTTTTTTTT-TGCCCACTTTTCCATCAACTATATATATATATATATGCCTCATCTGTATTTG-------------------CAA-TTCAA---AT---CAAAATC-ATAAAAAAAATGTC-T-GA-----AATT------CAGAATTACCGCCACGCAATAAGTCCCGCTCGTCACGTACCA-----------------------
droGri2 scaffold_15126:8230918-8231349 - GCTGCTG-CT-------GCTGCTGCATCTGCTGCTGTCCAGGCTGCCATCAGCAGCGGTGGTGTTGTGGCACGTGCTCAACTGCCGCTGCCCTTGCCGCC-GGCCAACGCACAACAG---C---CGCAACAGCAAC------------------------------------------------------AA------GCACTCTCACCGCAACAACAACAACAACAACAACAACAATCGCAAGCGTTTTATGCGCCGAAAGGTGCGTGTTCCTCTAGA---CCCG-T---------------------------CACTC--------TAGTA---CCT------TATAGCTAGCTGCTCTGAATACTCAACTGTTTCG--AC-TGATT-TTATATTGT-----TGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACA--CATTTACAATTTACAATTTTGGC-ATTTT-TTCTTTTTTGGTTATCG------TT-TGT-----------------------------------------TGTATTTGCGCTTACATTTTTCTCCATCGAAACGCTA--------------------------------AA-----AATT------CAGAATTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACAACACAACCACC------
droAna3 scaffold_12943:1694482-1694925 + GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCTCTGCCGCC-GCCGAATGCACAACAG---CAGGTGCAACAACAGCAACAG------CAA------CAACATC------------TGCAACTGCAACAGCCGCATGTTGCAGTGTCGCAGCAACAGCAACC------------------GCAAGCGTTCTACGCGCCGAAAGGTGTGTT-------------------CTTCTGAGTGTCCTTTTC---------------------C------------------AGAG--------------------------TGAGCCC-TGAGT-TGGTAGT------------------C----------------------------------AGCCCCGTTGCTCCTC-----GC----T-CCTC---ACCTCGCTCC-TTTT---CTAGCGATTTCTTT------GCCTATTTTCTCCCT----TTTT--------------------------------------------------------------GCCCACCAAA------TAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TTTTG---------------------------------------------------------------------CGTTTT---ACA--------------------------ATG-AA-----AATT------CAGAGCTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCTCCATCA---CC
droBip1 scf7180000396728:1532898-1533341 - GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCTCTGCCGCC-GCCAAATGCACAACAG---CAGGTGCAACAACAGCAACAG------CAA------CAACATC------------TGCAACTGCAACAGCCGCATGTTGCACTGTCGCCGCAACAGCAGCC------------------GCAAGCGTTCTACGCGCCGAAAGGTGTGTT-------------------CTTCTGAGTGTCCTTTCC---------------------C-----------------GAGAG--------------------------TGAGCCT-TGAGT-TGGTAGTTT------GC-CC-----T----------------------------------TAT-----CGCTCCTC-----GC----T-CCTC---ACCC-------TTTT---CTAGCGATTTCTTT------GCCTATTTTCTCCCC----TTAT--------------------------------------------------------------GACCAC--AA-AAA--TAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TTTTG---------------------------------------------------------------------CGTTTT---ACA--------------------------ATC-AA-----AATT------CAGAGCTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCTCCATCACCACC
droKik1 scf7180000302656:107221-107660 + ATTGCCG----------GGTACCATTGGTGGTGGTGTGCAGGCGGCCATAAGCGGCGGTGGTGTTGTGGCTAGGGCCCAGCTGCCGTTGCCATTGCCGCC-GCCCAATGCACAGCAACTGCAATTGC------AGCAACCACAACAACAA------CAACAACAGCCACAGCCGTTGCAACTACAGCAGCCG------GCACTTTCGCCGCAGCAGCAGCAGCAACA---------GCAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTTCCCCCTCCCC-------------------------------------------T--C---------GA------GAGAT--------------------------GGAGCCC-TGAGT-TGGTAGTTT-----GCC-CC-----C----------------------------------AGACACACTGCTCCTC----CGTTTT-------CTCACCT-------CTGTTTTCCAG-----------------------TT--C-TC----CAGT-------------------------------------------------------------TTTTCA---CG------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TTG------TT-TG---------------------------------------------------------------------CGAAATGCGCC-----------------------------A-AA-----AATT------CAGAACTTCCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCACC------
droFic1 scf7180000453925:362838-363291 - GATACCG----------GGTTCCATTGGTGGTGGTGTTCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCCCGGGCCCAGCTGCCGTTGCCATTGCCGCC-GCCAAATGCACATCCG---CAATTGCAACAGCACCAACAA------CAA------CAACAAC------------TACAGCTACAGCAGCCG------GCTATCTCGCCGCAGCAGCAACCGCAGCA---------ACAGCAAGCGTTCTACACGCCGAAAGGTGTGTTTCGTAG---A---CCCCTTC----------------------TCTCCCCCCC---GCCAAAA---TAAAA------AAGAC--------------------------TTAGCCC-T------GGTAGTTT-----TGC-C-TTCCC-----------------------------------AGATA---CGCTACTC-----ATTTT-------TCCCCGT-----CTTTTTTTTCCAA---A------AAAAAAAACCATCTT--C-CC----CTGT---------TT---------------------------------------------------TTCCA---CG------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC--------------------------------A-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------
droEle1 scf7180000491338:1245575-1245999 + GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTAGTGGCTCGCGCCCAACTGCCGCTGCCATTGCCACC-GCCAAATGCACAGCAG---CAATTGCAACAGCAACAGCAC------CAACAACAACAACACA------------TACAACTACAGCAACCG------GCATTATCGCCGCAGCAGCAACCG---------------CAGCAAGCGTTCTACGCGCCGAAAGGTGTGTGTCTTCCTC---------GTT----------------------TCCCCACCCC---CCCCAA---AAAAAA------AAGAG--------------------------TGAGCCCCTGAGT-TGGTAGTTT-----TTG-CCCCCCC-----------------------------------AGAAA---TGCTCCTCTCTTCATTTT-------T------------------------------------------------------------TGT--------------------------------------------------------------TACCC---CC------GAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC--------------------------------A-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACAACACCTCCAAC------
droRho1 scf7180000780107:445460-445879 - GATACCA----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCCAATGCACAGCAG---CAATTGCAAACGCACCAACAA---------------CAACAAC------------TACAACTACAGCAACCG------GCAATTTCGCCGCAACAGCAACCACAGCA---------ACAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCCCCATTCTCC-------------------------------------------A--C-----------------AAGAG--------------------------TGAGCCC-TGAGT-CGGTAGTTT-----TGCCCC-----C----------------------------------AGACA---TGCTCCTC-----ATTTT-------CTCAAAT-----TGTTTTTTCCC--------------------CCATT----T-CC----CAGT---------TT-----------------------------------------------T---TTTCA---CG------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC--------------------------------A-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------
droBia1 scf7180000302408:2714323-2714742 - GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCCAGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGTACAGCAG---CAATTGCAACAGCATCAACAA------CAA------CAACAAC------------TACAGCTTCAGCAACCG------GCAATTTCGCCTCAGCAACAACCG---------------CAACAAGCGTTCTACACGCCTAAAGGTGTGTGTCCCAGTTCTCC------TC-----------------------------------T--CAA--AGAAAAACATT--TAGAG--------------------------TGAGC---------TGGTAGTGT-----TGC-CC-----T----------------------------------AGATA---CGCTCCTC-----GTTTT-------CTCACCC-------CATTT-C------------------------------CC-CC----TTGT---------GT-----------------------------------------------TT-TTTCCAC--AA------AAT---------TTAAT-TTGAC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC-----------------------------A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------
droTak1 scf7180000415285:174673-175100 + GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCTATTAGCAGCGGCGGTGTGGTAGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGCACAGCAG---CAATTGCAACAGCACCAACAA------CAA------CAACATC------------TACAACTTCAGCAGCCG------GCAATTTCGCCGCAGCAACAGCCAC---A---------ACAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCCCTCTTT--C-------------------------------------------G--CT--TAGAAAAATATATAAAGAG--------------------------TGAGCCC-TGAGT-CGCTAGTTT-----T------------------------------------------------------GCTCCTC-----ATTTTCTT----CTCACCC-------TTTTT-C-------------------------------C-CCGCCATTGT---------TT-----------------------------------------------T---TTCCA---CA------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CAAAACGCCAA-----------------------------A-AAATATATATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAACA---AC
droEug1 scf7180000409452:215985-216409 + GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGTGGTGTGGTGGCTCGGGCCCAACTGCCGCTGCCATTGCCGCC-GCCAAATGCACATCAA---CAATTGCAACAGCACCAACAA------CAA------CAACAAC------------TACAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAACCA---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCTCTCTTTT---------------------------------CCCCACTCCCGTG--CCA----TAAGA------AAGAG--------------------------TGAGCTC-TGAGTCCGGTAGTTT-----TGC-CC-----C----------------------------------AGACA---TGCTCCTC-----ATTTT-------CTCACCC-------TTTTT-T-------------------------------C-CC----TTGT---------TT-----------------------------------------------T---TCCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTA------------------------------A-AA-----AATT------CAGAACTTCCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------
dm3 chr2L:13636020-13636433 + GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCA---------------A------CAACAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCCCATTTCCCT-------------------------------------------G--CAAGTAGAAAGA------TAGAG--------------------------TGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACCC-------CTACC-C-------------------------------C-CC----CTGT---------TT-----------------------------------------------TTCTTTCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACA--------------------------AAA-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCC---------
droSim2 2l:13231690-13232104 + dsi_24944 GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA------------------CAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGCCCCATTTCCCC-------------------------------------------G--CAAGTAGAAAGA------TAGAG--------------------------CGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACTC-------CTACC---------------------------------C-CC----CTGT---------TT-----------------------------------------------TTCTTTCCA---TA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACA--------------------------A-A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAAC---A---CCTCCAAC------
droSec2 scaffold_16:1771604-1772018 + GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA------------------CAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGCCCCATTTCCCC-------------------------------------------G--CAAGTAGAAAGA------TAGAG--------------------------CGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACTC-------CTACC---------------------------------C-CC----CTGT---------TT-----------------------------------------------TTCTTTCCA---TA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACA--------------------------A-A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAAC---A---CCTCCAAC------
droYak3 2L:10054784-10055204 + GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCGATTAGCAGCGGCGGAGTGGTGGCTCGGGCCCAGCTGCCGCTGCCTTTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA------CAA------CAACAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCA---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTTTCCCTTTTCT-C-------------------------------------------G--CAAGTAGAAAGA------AAGAG--------------------------TGAGCCC-TGAGT-TGGTACTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACCC-------TTATC---------------------------------C-CC----ATGT---------TT-----------------------------------------------TTCTTTCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAA-----------------------------A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------
droEre2 scaffold_4929:11822430-11822849 - GATACCG----------GGTTCCATTGGTGGTGGTGTTCAGGCGGCCATTAGCAGCGGCGGAGTGGTGGCCAGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA---------------CAACAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCTCTTTTCCCC-------------------------------------------G--CCAGTAGAAAGA------AAGAG--------------------------TGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACCC-------CTATC---------------------------------C-CC----ATGT---------TT-----------------------------------------------TTCTTTCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAATGCTTA---------------------------A-A-AA-----AATT------CAGAACTGCCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCGCGGGCCCAGCTGCCGCTGCCATTGCCGCCCGGCCAATGCACTGCAG---C---TG------CAGCAACAA------CA------------AC------------AACAACAACAGCA---A------GCTCTCTCTCCGCNTCAGAAAA------------------AAAAAACGTTCTATGCGCCGAAAGGTGCGTGTCCCCCC---------------------------------------------------C------------------AAAG--------------------------AGAGCCC-AGAGA-TC------------------------CCGTAGATTCCTGTAGAGCCCTATCCCTTATCTCTGTCT---AGCTC------------T-------CTCGCTC-------TCTTT---------------------------------A-CC----CCGT---------TC---------------------------------------------------TTCCAC--CA------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACG--------------------------C-T-GA-----AATTCCACCACAGAATTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCACC---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCT---AGCTC------------T-------CTCGCTC-------T..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................TGGTGGTGGTGTGCAGGCGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
.......................ATTGGTGGTGGTGTGCAGGCGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................TGGCGCGGGCCCAGCTGCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCGCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GGCCAATGCACTGCAG---C---TG------CAGCAACAA------CA------------AC------------AACAACAACAGCA---A------GCACTCTCACCGCAACAGC---CA---------------CAGCCAGCGTTCTATGCGCCGAAAGGTGCGTGTCCCCCCCCC------------------------------------------------C------------------AAAG--------------------------AGAGCCC-AGAGA-TC------------------------CCGTAGATTCCTGTAGAGCCCTATCCTTTATCTCTGTCT---AGCTC------------T-------CTCGCTC-------TTTT----------------------------------A-CC----CCGT---------TC---------------------------------------------------TTCCAC--CA------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACG--------------------------C-T-GA-----AATTCCCCCACAGAATTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCACC---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................GCAGGCGGCCATTAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGTCCCGCTCATCAC.............................1911.001010000
droWil2
GGCACCG-CCAGTTACAGGTTCACTGGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGCGTTGTGGCTCGCGCCCAGCTGCCGTTGCCATTGCCGCC-GGCTAATGCAC------------TGCAACAGCAACAACAA------------------------------------------------CAA------GCACTCTCTCCGCAACAACAAC------------------AGACAGCGTTCTATACCCCGAAAGGTGTGTGTCCCTCCC---------TTATCTTGACTCCCCTTAATCCAAC------------TT--AGAGCAGAAACC------CAGTT--------------------------TGGATTT-TG-TT-TTGTAGTTT-----T------------------------------------------------------------------------------CTCAA-----------------------------------------TT----T-CC----ATCC---------TTTTACCATCCACACCCTCCCCCAAACACATACACACACACACACACACATC-TTCCAC--CA------AAT---------TTAATTTTGTCCAT-TT-TTCTTTA-------TCG------TT-TG---------------------------------------------------------------------CAAAATCAA---AC---CAAAAACCAAAATAAAAA---CCG-AA-----AACT------CAGACTTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCACC---------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................AGGTTCACTGGGTGGTGGTGTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
........................................................................GCGCCCAGCTGCCGTTGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.................................................................................TGCCGTTGCCATTGCCGCC-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.25100001
droVir3
GGGCGTG----------GGTGCCATTGGTGGTGGTGTGCAGGCGGCCATCAGCAGCGGCGGCGTTGTGGCGCGTGCTCAGCTGCCGCTGCCGTTGCCGCC-GGCAAATGCACAGCAG---CA---GCAACAGCAACAACAA------CAA---------CAAC------------AACAACAACAACAACAA------GTACTCTCACCGCAACAACAACC------------------GCAAGCGTTTTATGCGCCGAAAGGTGCGTGTCCCACTCGCCTA-GGG-TCTTC-----------------------------------CAAGTAG---TC------CAGCG--------------------------CGAGCT-----------------------------------------------------------------------------GCTGTTT-----CGAAT-----------------------------------------------------------C-CC----ATAT---------TG---------------------------------------------------TTTCA---CGAACACACATTT--AATTTGTAAT-TTGTC-GT-TT-TTCTTTT-------TCGTT----TT-TG------------------------------------------TGTTTTTG----------TTTCTCTTTCAAAATGCTCAAAAAAAAAAACACCAACAAAAACA---ACAAAA-----ATTT------TAGAATTACCACCGCGCAATAAGTCCCGCTCATCGCGTACCAACAACA---ACACC---------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAGTCCCGCTCATCGCGTA..........................2212.002000000000000000000000000000002000000000000000000000000000000000
.................................................................GTGGCGCGTGCTCAGCTGCCGCTGCCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000002
................................................................TGTGGCGCGTGCTCAGCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTCCCGCTCATCGCGTACC........................2211.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------GCTGTTT-----CGAAT-----------------------------------------------------------C-CC----ATAT---------TG---------------------------------------------------TT.........................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
.........................TGGTGGTGGTGTGCAGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
...........................GTGGTGGTGTGCAGGCGGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GCAAGCGTTTTATGCGCCGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................AACAACAA------GTACTCTCACCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................CAACAACAACAA------GTACTCTCACCGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................ATGCGCCGAAAGGTGCGTGTCCCACTCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001000000000000000000000000000000000000000000000000000000000000001
.....TG----------GGTGCCATTGGTGGTGGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000001000000000000000000000000000000000000000000
................................GGTGTGCAGGCGGCCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................C-GGCAAATGCACAGCAG---T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
..........................................................................GCTCAGCTGCCGCTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CAA---------CAAC------------AACAACAACAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.80160016000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AAC------------AACAACAACAACAACAA------GTACTCTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.501001000000000000000000000000000000000000000000000000000000000000
............................................................................................................GCACAGCAG---CA---GCAACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2340.251001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................TGCACAGCAG---CA---GCAACAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................A------CAA---------CAAC------------AACAACAACAACAACAA------GTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2890.111000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................AACAGCAACAACAA------CAA---------CAAC------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CA---GCAACAGCAACAACAA------CAA---------CAAC------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
GGGCGTGGGT-------GGTGCTATGGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGTGGTGTGGTGGCGCGTGCGCAGCTGCCACTGCCATTGCTGCC-GGCAACTGCACAGCAA---CAA---------C---------------------------------------------AACAACAACAACAA------GCACTCTCACCGCAACAACAACAACAACAACAACAACAGCCGCAAGCGTTCTATGCGCCGAAAGGTGCGTCTGCCACTCCA------------------------------------------------C-------------------GAG--------------------------AGTGTTC-TATGC-CAGTAGTTCCCCAATGC-CA-----G----------------------------------AGAGC---TGCTGTTT-----AGTTT-------CTCATAT-------TTGTT---------------------------------T-CA----CTGAACTACTAAA---------------------------------------------------------G---CAAACACACATTT--AATTTCTATT-TTGAC-CTATTTTTCTTTT-------TCCTTTTTTTT-TGCCCACTTTTCCATCAACTATATATATATATATATGCCTCATCTGTATTTG-------------------CAA-TTCAA---AT---CAAAATC-ATAAAAAAAATGTC-T-GA-----AATT------CAGAATTACCGCCACGCAATAAGTCCCGCTCGTCACGTACCA-----------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....GTGGGT-------GGTGCTATGGGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
......................................................GCGGTGGTGTGGTGGCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................GCAGCTGCCACTGCCATTGCTGCC-G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.....................................................................................................................................................................................................................................................GTTCTATGCGCCGAAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
.........................................................................................................................................................................................................................AACAACAACAACAACAACAGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23140.071100000
...........................................................................................................................................................................................................................CAACAACAACAACAACAGCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.051000010
................................................................................................................................................................................................................CGCAACAACAACAACAACAACAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..............................................................................................................................................................................................................ACCGCAACAACAACAACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
GCTGCTG-CT-------GCTGCTGCATCTGCTGCTGTCCAGGCTGCCATCAGCAGCGGTGGTGTTGTGGCACGTGCTCAACTGCCGCTGCCCTTGCCGCC-GGCCAACGCACAACAG---C---CGCAACAGCAAC------------------------------------------------------AA------GCACTCTCACCGCAACAACAACAACAACAACAACAACAATCGCAAGCGTTTTATGCGCCGAAAGGTGCGTGTTCCTCTAGA---CCCG-T---------------------------CACTC--------TAGTA---CCT------TATAGCTAGCTGCTCTGAATACTCAACTGTTTCG--AC-TGATT-TTATATTGT-----TGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACA--CATTTACAATTTACAATTTTGGC-ATTTT-TTCTTTTTTGGTTATCG------TT-TGT-----------------------------------------TGTATTTGCGCTTACATTTTTCTCCATCGAAACGCTA--------------------------------AA-----AATT------CAGAATTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACAACACAACCACC------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................CACAACAG---C---CGCAACAGCAAC------------------------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00220
......................................................................................................................................................................................................................................ACAACAATCGCAAGCGTTTTATGCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
.............................................................................................................CACAACAG---C---CGCAACAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110
.CTGCTG-CT-------GCTGCTGCATCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.17110
droAna3
GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCTCTGCCGCC-GCCGAATGCACAACAG---CAGGTGCAACAACAGCAACAG------CAA------CAACATC------------TGCAACTGCAACAGCCGCATGTTGCAGTGTCGCAGCAACAGCAACC------------------GCAAGCGTTCTACGCGCCGAAAGGTGTGTT-------------------CTTCTGAGTGTCCTTTTC---------------------C------------------AGAG--------------------------TGAGCCC-TGAGT-TGGTAGT------------------C----------------------------------AGCCCCGTTGCTCCTC-----GC----T-CCTC---ACCTCGCTCC-TTTT---CTAGCGATTTCTTT------GCCTATTTTCTCCCT----TTTT--------------------------------------------------------------GCCCACCAAA------TAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TTTTG---------------------------------------------------------------------CGTTTT---ACA--------------------------ATG-AA-----AATT------CAGAGCTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCTCCATCA---CCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................CTGCCGCC-GCCGAATGCACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................AGCAACAG------CAA------CAACATC------------TGCAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..TACCG----------GGTTCCATTGGTGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
....................................................................................................................................................................................................TTGCAGTGTCGCAGCAACAGCAACC------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....................................................................................................................................................AA------CAACATC------------TGCAACTGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.501001000
...........................................................................................................................GTGCAACAACAGCAACAG------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.141100000
droBip1
GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCTCTGCCGCC-GCCAAATGCACAACAG---CAGGTGCAACAACAGCAACAG------CAA------CAACATC------------TGCAACTGCAACAGCCGCATGTTGCACTGTCGCCGCAACAGCAGCC------------------GCAAGCGTTCTACGCGCCGAAAGGTGTGTT-------------------CTTCTGAGTGTCCTTTCC---------------------C-----------------GAGAG--------------------------TGAGCCT-TGAGT-TGGTAGTTT------GC-CC-----T----------------------------------TAT-----CGCTCCTC-----GC----T-CCTC---ACCC-------TTTT---CTAGCGATTTCTTT------GCCTATTTTCTCCCC----TTAT--------------------------------------------------------------GACCAC--AA-AAA--TAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TTTTG---------------------------------------------------------------------CGTTTT---ACA--------------------------ATC-AA-----AATT------CAGAGCTACCACCACGCAATAAGTCCCGCTCATCACGTACCAACAACA---CCTCCATCACCACCSizeHit CountTotal NormTotal
No Reads
droKik1
ATTGCCG----------GGTACCATTGGTGGTGGTGTGCAGGCGGCCATAAGCGGCGGTGGTGTTGTGGCTAGGGCCCAGCTGCCGTTGCCATTGCCGCC-GCCCAATGCACAGCAACTGCAATTGC------AGCAACCACAACAACAA------CAACAACAGCCACAGCCGTTGCAACTACAGCAGCCG------GCACTTTCGCCGCAGCAGCAGCAGCAACA---------GCAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTTCCCCCTCCCC-------------------------------------------T--C---------GA------GAGAT--------------------------GGAGCCC-TGAGT-TGGTAGTTT-----GCC-CC-----C----------------------------------AGACACACTGCTCCTC----CGTTTT-------CTCACCT-------CTGTTTTCCAG-----------------------TT--C-TC----CAGT-------------------------------------------------------------TTTTCA---CG------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TTG------TT-TG---------------------------------------------------------------------CGAAATGCGCC-----------------------------A-AA-----AATT------CAGAACTTCCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCACC------SizeHit CountTotal NormTotal
No Reads
droFic1
GATACCG----------GGTTCCATTGGTGGTGGTGTTCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCCCGGGCCCAGCTGCCGTTGCCATTGCCGCC-GCCAAATGCACATCCG---CAATTGCAACAGCACCAACAA------CAA------CAACAAC------------TACAGCTACAGCAGCCG------GCTATCTCGCCGCAGCAGCAACCGCAGCA---------ACAGCAAGCGTTCTACACGCCGAAAGGTGTGTTTCGTAG---A---CCCCTTC----------------------TCTCCCCCCC---GCCAAAA---TAAAA------AAGAC--------------------------TTAGCCC-T------GGTAGTTT-----TGC-C-TTCCC-----------------------------------AGATA---CGCTACTC-----ATTTT-------TCCCCGT-----CTTTTTTTTCCAA---A------AAAAAAAACCATCTT--C-CC----CTGT---------TT---------------------------------------------------TTCCA---CG------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC--------------------------------A-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------SizeHit CountTotal NormTotal
No Reads
droEle1
GATACCG----------GGTTCCATTGGTGGTGGTGTGCAGGCGGCCATTAGCAGCGGCGGTGTAGTGGCTCGCGCCCAACTGCCGCTGCCATTGCCACC-GCCAAATGCACAGCAG---CAATTGCAACAGCAACAGCAC------CAACAACAACAACACA------------TACAACTACAGCAACCG------GCATTATCGCCGCAGCAGCAACCG---------------CAGCAAGCGTTCTACGCGCCGAAAGGTGTGTGTCTTCCTC---------GTT----------------------TCCCCACCCC---CCCCAA---AAAAAA------AAGAG--------------------------TGAGCCCCTGAGT-TGGTAGTTT-----TTG-CCCCCCC-----------------------------------AGAAA---TGCTCCTCTCTTCATTTT-------T------------------------------------------------------------TGT--------------------------------------------------------------TACCC---CC------GAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC--------------------------------A-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACAACACCTCCAAC------SizeHit CountTotal NormTotal
No Reads
droRho1
GATACCA----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCCAATGCACAGCAG---CAATTGCAAACGCACCAACAA---------------CAACAAC------------TACAACTACAGCAACCG------GCAATTTCGCCGCAACAGCAACCACAGCA---------ACAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCCCCATTCTCC-------------------------------------------A--C-----------------AAGAG--------------------------TGAGCCC-TGAGT-CGGTAGTTT-----TGCCCC-----C----------------------------------AGACA---TGCTCCTC-----ATTTT-------CTCAAAT-----TGTTTTTTCCC--------------------CCATT----T-CC----CAGT---------TT-----------------------------------------------T---TTTCA---CG------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC--------------------------------A-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------SizeHit CountTotal NormTotal
No Reads
droBia1
GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCCAGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGTACAGCAG---CAATTGCAACAGCATCAACAA------CAA------CAACAAC------------TACAGCTTCAGCAACCG------GCAATTTCGCCTCAGCAACAACCG---------------CAACAAGCGTTCTACACGCCTAAAGGTGTGTGTCCCAGTTCTCC------TC-----------------------------------T--CAA--AGAAAAACATT--TAGAG--------------------------TGAGC---------TGGTAGTGT-----TGC-CC-----T----------------------------------AGATA---CGCTCCTC-----GTTTT-------CTCACCC-------CATTT-C------------------------------CC-CC----TTGT---------GT-----------------------------------------------TT-TTTCCAC--AA------AAT---------TTAAT-TTGAC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAC-----------------------------A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------SizeHit CountTotal NormTotal
No Reads
droTak1
GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCTATTAGCAGCGGCGGTGTGGTAGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGCACAGCAG---CAATTGCAACAGCACCAACAA------CAA------CAACATC------------TACAACTTCAGCAGCCG------GCAATTTCGCCGCAGCAACAGCCAC---A---------ACAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCCCTCTTT--C-------------------------------------------G--CT--TAGAAAAATATATAAAGAG--------------------------TGAGCCC-TGAGT-CGCTAGTTT-----T------------------------------------------------------GCTCCTC-----ATTTTCTT----CTCACCC-------TTTTT-C-------------------------------C-CCGCCATTGT---------TT-----------------------------------------------T---TTCCA---CA------AAT---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CAAAACGCCAA-----------------------------A-AAATATATATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAACA---ACSizeHit CountTotal NormTotal
No Reads
droEug1
GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGTGGTGTGGTGGCTCGGGCCCAACTGCCGCTGCCATTGCCGCC-GCCAAATGCACATCAA---CAATTGCAACAGCACCAACAA------CAA------CAACAAC------------TACAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAACCA---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCTCTCTTTT---------------------------------CCCCACTCCCGTG--CCA----TAAGA------AAGAG--------------------------TGAGCTC-TGAGTCCGGTAGTTT-----TGC-CC-----C----------------------------------AGACA---TGCTCCTC-----ATTTT-------CTCACCC-------TTTTT-T-------------------------------C-CC----TTGT---------TT-----------------------------------------------T---TCCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTA------------------------------A-AA-----AATT------CAGAACTTCCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------SizeHit CountTotal NormTotal
No Reads
dm3
GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCA---------------A------CAACAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCCCATTTCCCT-------------------------------------------G--CAAGTAGAAAGA------TAGAG--------------------------TGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACCC-------CTACC-C-------------------------------C-CC----CTGT---------TT-----------------------------------------------TTCTTTCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACA--------------------------AAA-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCC---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................GCAG---CAAATGCAACAGCA---------------A------CAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTCCAGGCGGCCATTAGCAGCGGCGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................AGCAGCCG---------------CAGCAAGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CAACAAC------------TGCAACTACAGCAACCG------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................GCC-GCCAAATGGACAGCAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AAATGGACAGCAG---CAAATGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................GCC-GCCAAATGGACAGCAG---CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CCAAATGGACAGCAG---CAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................CAAC------------TGCAACTACAGCAACCG------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................CCAAATGGACAGCAG---CAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGATCATCACGTACCAACAACA---CC............2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCA---TGCTCCTC----CATTT.................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CGCAGCAGCAGCCG---------------CAGCAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................ACAAC------------TGCAACTACAGCAACCG------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CGGCCATTAGCAGCGGCGGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
........................................................................................................AAATGGACAGCAG---CAAATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
........................................................................................................................................................................................................................................................................................T-------------------------------------------G--CAAGTAGAAAGA------TAGAG--------------------------TGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGATCATCACGTACCAACAACA---..............2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AG--------------------------TGAGCCC-TGAGT-TGGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AAATGGACAGCAG---CAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................ACAGCAACCG------GCAATTTCGCCGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TGCAACTACAGCAACCG------GCAATTTCGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CCGCTGCCATTGCCGCC-GCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GATACCG----------GGTTCCATTGGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................AGCAAGCGTTCTACACGCCGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................AGTAGAAAGA------TAGAG--------------------------TGAGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCGATCATCACGTACCAAC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAA........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................TGCCGCTGCCATTGCCGCC-GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................AATTTCGCCGCAGCAGCAGCCG---------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................GCAACTACAGCAACCG------GCAATTTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GCGGTGTGGTGGCTCGGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGTCCAGGCGGCCATTAGCAGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................CAAATGGACAGCAG---CAAATGCAACAGCA---------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......G----------GGTTCCATTGGTGGTGGTGTCCAGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCCGATCATCACGTACCAACAAC..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCTACA--------------------------AAA-AA-----AATT------CAG..............................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TCCAGGCGGCCATTAGCAGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATTGGTGGTGGTGTCCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................AGGCGGCCATTAGCAGCGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................CGCC-GCCAAATGGACAGCAG---C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..TACCG----------GGTTCCATTGGTGGTGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................A---------------A------CAACAAC------------TGCAACTACAGCAACCG------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................G--------------------------TGAGCCC-TGAGT-TGGTAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACGCAATAAGTCCCGAT...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTCCCGATCATCACGTACCAACAAC..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AG--------------------------TGAGCCC-TGAGT-TGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................CAAATGGACAGCAG---CAAATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................CAGCAGCCG---------------CAGCAAGCGTTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------TTAAT-TTGTC-GT-TT-TTCTTT--------...............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA------------------CAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGCCCCATTTCCCC-------------------------------------------G--CAAGTAGAAAGA------TAGAG--------------------------CGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACTC-------CTACC---------------------------------C-CC----CTGT---------TT-----------------------------------------------TTCTTTCCA---TA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACA--------------------------A-A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAAC---A---CCTCCAAC------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................CATTTCCCC-------------------------------------------G--CAAGTAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
.........................................GCGGCCATTAGCAGCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..................................................................................................................................AGCAGCAACAA------------------CAAC------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
.................................................................................................................................CAGCAGCAACAA------------------CAAC------------TG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110000000000000000
droSec2
GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCCATTAGCAGCGGCGGTGTGGTGGCTCGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA------------------CAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGCCCCATTTCCCC-------------------------------------------G--CAAGTAGAAAGA------TAGAG--------------------------CGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACTC-------CTACC---------------------------------C-CC----CTGT---------TT-----------------------------------------------TTCTTTCCA---TA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTACA--------------------------A-A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAAC---A---CCTCCAAC------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................CGCCGCAGCAGCAGCCG---------------CAGCAAGCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------CAGAACTACCACCACGCAATAAGTCC.......................................2811.0011000
droYak3
GATACCG----------GGTTCCATTGGTGGTGGTGTCCAGGCGGCGATTAGCAGCGGCGGAGTGGTGGCTCGGGCCCAGCTGCCGCTGCCTTTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA------CAA------CAACAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCA---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTTTCCCTTTTCT-C-------------------------------------------G--CAAGTAGAAAGA------AAGAG--------------------------TGAGCCC-TGAGT-TGGTACTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACCC-------TTATC---------------------------------C-CC----ATGT---------TT-----------------------------------------------TTCTTTCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAACGCTAA-----------------------------A-AA-----AATT------CAGAACTACCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................GTGTCCAGGCGGCGATTAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................GTGGTGGCTCGGGCCCAGCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...............................................................................GCTGCCGCTGCCTTTGCCGCC-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............................................................................................................................................................................................................................CA---------------CAGCAAGCGTTCTACACGCCGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
......................................................................................................................................GCAACAA------CAA------CAACAAC------------TGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.11100100000000
.......................................................................................................................................CAACAA------CAA------CAACAAC------------TGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.06100100000000
.............................................................................................................................GCAACAGCAGCAACAA------CAA------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEre2
GATACCG----------GGTTCCATTGGTGGTGGTGTTCAGGCGGCCATTAGCAGCGGCGGAGTGGTGGCCAGGGCCCAGCTGCCGCTGCCATTGCCGCC-GCCAAATGGACAGCAG---CAAATGCAACAGCAGCAACAA---------------CAACAAC------------TGCAACTACAGCAACCG------GCAATTTCGCCGCAGCAGCAGCCG---------------CAGCAAGCGTTCTACACGCCGAAAGGTGTGTGTCTCTTTTCCCC-------------------------------------------G--CCAGTAGAAAGA------AAGAG--------------------------TGAGCCC-TGAGT-TGGTAGTTT-----TGC-CC-----C----------------------------------AGCCA---TGCTCCTC----CATTTT-------CTCACCC-------CTATC---------------------------------C-CC----ATGT---------TT-----------------------------------------------TTCTTTCCA---CA------AAC---------TTAAT-TTGTC-GT-TT-TTCTTT--------TCG------TT-TG---------------------------------------------------------------------CGAAATGCTTA---------------------------A-A-AA-----AATT------CAGAACTGCCACCACGCAATAAGTCCCGATCATCACGTACCAACAACA---CCTCCAAC------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................TCAGGCGGCCATTAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..................................................................................................................................AGCAGCAACAA---------------CAACAAC------------T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910000010
................................................................................................................................ACAGCAGCAACAA---------------CAACAAC------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000

Generated: 05/18/2015 at 12:33 AM