ID:

dps_1366

 Coordinate:

4_group1:1844197-1844347 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

0.0 0.5 0.9

Flybase annnotation

exon [dpse_GLEANR_16926:1]; CDS [Dpse\GA25391-cds]; intron [Dpse\GA25391-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTACATCGTTTTACTGCTTGAATAGAGTTTTATACAGGCAACAACAAGTCACAAGAAGAAACTCCCACCCACGCACTATTCAGCCTCGCCCAACAGCTGCCAAGAATAAATCAGGGATACTTCTTCATTTTCGTCCTTTTGCCTCTGCAAATGCCTGCATTGAGAGTATCACAATGAAAATAGCTACAGAATATTGC
***************************************************************************************************...........................((........))..........******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M062
head
...............................................................................................................................................................................................TTTGCCTCTGCAAATGCCTGC....................................... 21 0 1 3.00 3 3 0 0 0
.................GTCTCACCTCCTTCGAGGAGC..................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0
.............................................................................................................................................................................................CTTTTGCCTCTGCAAATGCC.......................................... 20 0 1 1.00 1 1 0 0 0
...................................................................................................AAGTCACAAGAAGAAACTCCC................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..............................................................................................ACAACAAGTCACAAGAAGAA......................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
..............................CGAGGAGCTGCCCGGACTGT......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
..............................CGAGGAGCTGCCTGGACTGTG........................................................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0
...............................................................................................................................CACTATTCAGCCTCGCCCAAC....................................................................................................... 21 0 1 1.00 1 1 0 0 0
..................TCTCACCTCCTTCGAGGAGCT.................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.........................................................CATCGTTTTACTGCTTGAATA............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................TTTTGCCTCTGCAAATGCCTG........................................ 21 0 1 1.00 1 1 0 0 0
...................................................................................TTATACAGGCAACAACAAGTC................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.........................TCCTTCGAGGAGCTGCCCGGACTG.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0
......................................................................................TACAGGCAACAACAAGTCACA................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................TGCCAAGAATAAATCAGGGAT............................................................................... 21 0 1 1.00 1 1 0 0 0
.......GTGGAGAAGGGTCTCACCTCC............................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..........................CCTTCGAGGAGCTGCCTGG.............................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0
..........................................................ATCGTTTTACTGCTTGAATAG............................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
...................................................................................................AAGTCACAAAAAGAAACTCCC................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................TTTTCGTCCTTTTGCCTCTGC................................................. 21 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................ATACTTCTTCATTTTCGTCCT............................................................ 21 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................TTGCCTCTGCAAATGCCTGCA...................................... 21 0 1 1.00 1 1 0 0 0
............................TTCGAGGAGCTGCCCGGACTT.......................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
...................................................................................................................................ATTCAGCCTCGCCCAACAGC.................................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................CCTCCTTCGAGGAGCTGCCCGGACT........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
...TCTGGTGGAGAGGGGTCTCAC................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
................GGTCTCACCTCCTTCGAGGAG...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................TTCATTTTCGTCCTTTTGC....................................................... 19 0 2 0.50 1 0 0 0 1
.............................................................................................................................................................................................................................GTCACAGTGAAAGTAGCTACA......... 21 3 2 0.50 1 1 0 0 0
............................................................CGTTTTACTGCTTTAATAT............................................................................................................................................................................ 19 2 4 0.25 1 1 0 0 0
.......GTGAAGAAGGGTCTCGGCTC................................................................................................................................................................................................................................ 20 3 10 0.10 1 1 0 0 0

Anti-sense strand reads

CCTAGACCACCTCTTCCCAGAGTGGAGGAAGCTCCTCGACGGGCCTGACACATTCATGTAGCAAAATGACGAACTTATCTCAAAATATGTCCGTTGTTGTTCAGTGTTCTTCTTTGAGGGTGGGTGCGTGATAAGTCGGAGCGGGTTGTCGACGGTTCTTATTTAGTCCCTATGAAGAAGTAAAAGCAGGAAAACGGAGACGTTTACGGACGTAACTCTCATAGTGTTACTTTTATCGATGTCTTATAACG
*******************************************************************************************************...........................((........))..........*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM343916
embryo
 M022
male body		 GSM444067
head
 SRR902011
testis
 SRR902010
ovaries
.............................................................................................................................GCGGGATAAGTCTGAGCG............................................................................................................ 18 2 5 5.40 27 27 0 0 0 0 0 0
....................................................................................................TCAGTGTTCTTCTTTGAGGGT.................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................CCGTTGTTGTTCAGTGTTCT............................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................................GAGCGGGTTGTCGACGGTTC............................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0
.......................................CGGGCCTGACACATTCATGT................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................CGGTTGTCGGCGGTTCTTATT........................................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0
..........................................................TAGCAAAATGACGAACTTAT............................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................TGTTGTTCAGTGTTCTTCTTT........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TGTTACTTTTATCGATGTCTT...... 21 0 1 1.00 1 1 0 0 0 0 0 0
.................................CCTCGACGGGCCTGACACAT...................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.................................CCTCGACGGGCCTGACACATT..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................CGGGTTGTCGACGGTTCTTA.......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................GTTCTTATTTAGTCCCTATGA............................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................GTCGGAGCGGGTTGTCGA................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................................GTCGGAGCGGGTTGTCGACG................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................ATGTAGCGAAATGACGAACTT............................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TTCTTTGAGGGTGGGTGCGTG......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................TCACTATGAAGAAGTAAAAGT................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................CGGTTCTTATTTAGTCCCTAT.............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................GTGGGTGCGTGATAAGTCGGA............................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................TTTAGTCCCTATGAAGAAGTG..................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
................................................................................................................TTTGAGGGTGGGTGCGTG......................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................GGGTTGTCGACGGTTCTT........................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................AGTCGGAGCGGGTTGTCGA................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
................................TCCTCGACGGGCCTGACACAT...................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................TTATCTCAAAGTATGTCCGTT............................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................GGAGCGGGTTGTCGACGGTT.............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................GCGGGTTGTCGACGGTTCTT........................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................GGTGCGTGATAAGTCGGAGC............................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................AGGGTGGGTGCGTGATAAGTC.................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................GGGCCTGACACGTTCATGT................................................................................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................TTTGAGGGTGGGTGCGTGGT....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................GTTCTTATTTAGTCACTATGA............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................CCGTTGTTGTTCAGTGTTCTT............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................TGGGTGCGTGGTAAGTCGGA............................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................TGAAGAAGTAAAAGCAGGAAA.......................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................TTAGCAAAATGACGAACTTATC............................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 1 0
..............TCCCAGAGTGGAGGAAGCTC......................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................GGAGCGGGTTGTCGGCGGTT.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................GTGATAAGTCGGAGCGGGTTGT...................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................TTTGGGTGCGTGATAAGTCGG................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................TATGTCCGTTGTTGTTCAGTG................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................GGAGACGTTTACGGACGTAAC................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................GGTTGTCGACGGTTCTTGT......................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................CCGTTGTTGTTCAGTGTTC.............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................ATTTAGTCCCTATGAAGAAGT...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GGGTGCGTGATAAGTCGGA............................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................CGGGTTGTCGACGGTTCTT........................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................GTCCCTATGAAGAAGTAAA................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GGACGTAACTCTCATAGTGTT....................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACTTATCTCCAGATCTGTC................................................................................................................................................................ 19 3 16 0.94 15 14 0 1 0 0 0 0
................................................................................................TGGTTCAGTGTTTTTCTTTGA...................................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTCTTCGATGGTGGGGGCGTG......................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0
..........................................................................................................TTCTTCTTTCAGGGTGGCT.............................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................................................................................AGCAGGGGAGCGGAGACGTT............................................... 20 3 6 0.17 1 0 1 0 0 0 0 0
............................................................................................................................CGCGCGATAAGTCTGAGCG............................................................................................................ 19 3 7 0.14 1 1 0 0 0 0 0 0
..................................................................................AAATATGTTCGTTGTTGTTG..................................................................................................................................................... 20 2 8 0.13 1 0 0 0 0 0 0 1
.........................................................................................................GTTCTTCTTTGAGGGGTG................................................................................................................................ 18 2 14 0.07 1 1 0 0 0 0 0 0
..................................................................................................................................TTAAATCTGAGCGGGTTGTC..................................................................................................... 20 3 16 0.06 1 1 0 0 0 0 0 0
............................................................................................................................AGCGGGATAAGTCTGAGCG............................................................................................................ 19 3 17 0.06 1 1 0 0 0 0 0 0
.....................................................................................................................GGGTGGGTGCTCAATAAGT................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:1844147-1844397 + dps_1366 GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTACATCGTTT--TACTGCTTGAATAGAGT--TTT--ATAC------------------AG---------GCA--ACAACAAGTCACAA--------G-------AAGA--AACTCCCACCCACGCACTATTCAGCCTCGCCCA-ACAGCTGC---CAAGAA----TAAATC---------AGGGATACTTCTTC--------AT--TTTCGTCC---------TTTTGCC-TC--------------TGCAAATGCCTGCA---------------------------TTGAG---------------------AGTATCACAATGAAAATAG-CT--ACA-GA----------ATA----------TTGC----
droPer2 scaffold_5:3361255-3361505 - GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTACATCGTTT--TACTGCTTAAATAGAGT--TTT--ATAC------------------AG---------GCA--ACAACCAGTCACAA--------G-------AAGA--AACTCCCACCCACGCACAATTCAGCCTCGCCCA-ACAGCTGC---CAATAA----TAAATC---------AGTGATCCTTCTTC--------AT--TTTCGTCC---------TTTTGCC-TC--------------TGCAAATGCCTGCA---------------------------TTGAG---------------------TGTATCACAATGAAAATAG-CT--ACA-GA----------ATA----------TTGC----
droWil2 scf2_1100000004585:815385-815617 + GGACCTGGTCGACAAGGGTCTGGTGTCCTTCGAGGAGCTTCCAGGATTGTGTAAGTCT--AAAAAAC------A--------ATA--CTTAATTCAATTAAAACTAA------AAC---------CA--AA----AG----CC--------A-------ATCG--TCCTCACTCCCACGCACT-TTTAACCTCGCCCA-ACTGCAGATGCCACAAA-------------------A-----GTTC----TTTAA------------------------TCAT--------------------AGGG----------AATCCTTAATGAAATAAACCCTTTTAT----GGGGT-------------TTCGT-----------AGAATTATTTAGACA-AA----------ATG----------TCAT----
droVir3 scaffold_12723:5196978-5197035 + GGACCTCGTCGACAAGGGCCTGGTGTCCTTTGAGGAGCTGCCTGGCCTATGTAAGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:16492103-16492160 - GGATCTTGTGGACAAGGGCCTAGTCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:8224662-8224719 + GGACCTCGTTGACAAGGGCCTGGTGTCCTTCGAGGAGCTGCCAGGACTCTGTGAGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12943:1699376-1699616 - GGACCTGGTGGACAAGGGGCTCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTAT--CGTTTC--AAGGCTTCAA-----------------------------------------ATTCTGAC--AAATTCTCTAAAA-----------------TCAA-AGTGTAACTCCCACGCAAA-CCAAACCTCGCCCA-ACTGCTTG---AAATAA-TTCCTAA--AACAATTTC--------------TTAAATTCATATTA---ACG---------TTATAAA-ACTGTAATATCTTCTATAAAAACATCAA--AATCTTTT---------------------------------------------A--------------AAAG-TT--GTA-TG----------GTT----------TTAT----
droBip1 scf7180000396728:1527167-1527417 + GGACCTGGTGGACAAGGGTATCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTAT--CATTT--AAGTGCTTAA----------------------------------------------------AAATTGAAGAAATT--------CCCTACAATCAA-AGTGTAACTCCCACGCAA-ATGAAACCTCGCCCA-ACTGTTTT---AAAGAA-CTTCTTA--AATAGTTTC--------------TTAAATTAATATTT---TCA---------TTATTAAATTTGTAATATCTTCTATGAAAATACCTA--AATCTTTAAAGAGTTGAATGGTTTTAT------------------------------------------------------GA----------ATA----------TAAA----
droKik1 scf7180000302656:116212-116381 - GGACTTGGTGGACAAGGGCCTGAGCTCCTTCGAGGAGCTGCCCGGATTGTGTAAGTAT--CAGGATT------A--------AGA----------------------------ACTAAT--TTTCCCCTAATGTAGGAGAACAACTCGCTTT-------GCTG--AGGACACTCCCACGCAAAATGAGACCTCGCCCA-AA-----------ACAA----CAAAAC---------GGATACATTTCTCC--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453925:358143-358397 + GGATCTGGTGGACAAGGGTCTAACGTCCTTTGAGGAGCTCCCTGGACTGTGTAAGTAA--CAAAACC------A--------AAATGTT--T--------G-GAATAAGGAAAATCGTTGTTTTCCA--AAGTTAAGTGAACA--------T-------CCTA--CAGACACTCCCACGCAAAATAGGGCCTCGCCCA-GCTGTTGA---GATTAA-CTTCAAATT---------AGTAATGTTT----AAATGTTT----T-TAG--TTAACTTTACCATTGCA-TT-------------------------------------------------------------TGCACTTACCTTAATCTGAGA-------------------------GATG---------------TAATTTTC-TTA-TTG
droEle1 scf7180000491338:1250826-1251062 - GGACCTGGTGGATAAAAATCTGTCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTAT--CGAAATT------A--------ATG---------------------AAGTTAAGTTTGCATTGTACG--AAAGTGAGTCAATG--------G-------GCGG--TTGACACTCCCACGCAAAATAAGACCTCGCCCA-GATGTTGA---GAAAAA-TTCAAGATT---------AGTTATGTTC----TTTCGTTT----TA-TT--ATT---AAAATAATA---------------------------------------------------------------------CTTTATTTTAGTTTGTTA-------------------------ACTC-TTAAGTGGCATT----------CTGT----
droRho1 scf7180000780107:440566-440800 + GGATCTGGTGGACAAGGGGCTATCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTAT--TGAATTT------A--------AGC---------------------AATTTAAGTGCTTATTTTAAA--AAACTGACTCAACG--------G-------GATA--TAGACACTCCCACGCTAAATGAGACCTCGCCCA-GCTGTTGT---GAAAAACTTTAAGTTT---------TGTAATATTC----TTGTGTTC----TA-TC--ATT---TAAATAAT-------------------------------------------------------------------G--GGTAATATTTATTTGCTA-------------------------AGAA-TTAATTG---TG----------CTAT----
droBia1 scf7180000302408:2709309-2709554 + GGACCTGGTGGACAAGGGTCTGACGTCCTTTGAGGAGATGCCTGGGCTGTGTAAGTAA--TGAAATT------A--------GT--TTT--T--------AAAAAGAAGTCAAATGGTTATTTTGCA--AAATTGAGTCAACA--------C-------ACTG--CAGACACTCCCACGCAAAA-AGGGCCTCGCCCCAGCTGTGCA---GAAATG-TGAAAAATT---------AGTAATTTTC----TTTGAC---------AC--ATTATGAAGTGTA--------------------------------------------------------------TTGGTTGGTTTCAATAAT----------------------AATTG--T--ACA-GATTACATTG---AG------------TT----
droTak1 scf7180000415285:179601-179852 - GGATCTGGTGGACAAGGGGCTGTCATCCTTCGAGGAGTTGCCCGGGTTGTGTAAGTAT--CAAATTTGAACTCTGTATTAA---------------------AACTATGTTCTAGTGTAATTTAGCA--AAACTGAGACAAAA--------G-------ACCC-ACAGCCACTCCCACGCAAAA-------TCGCCCA-GATGTTCA---GAAAAA-CTTAAAATT---------AGTAATGTTC----TTGTGTAC----TG-TC--ATTATTCAAATCATTCG-T-------------------------------------------------------------TGGTAATTATATTATTATGT-A-------------------------GAAATTACATC---GCG----------GTTT----
droEug1 scf7180000409452:220907-221159 - GGATTTGGTCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGCTTGTGTAAGTAT--TAAATTC------A--------GT--CTT--A--------AAAAATAAGTTAAAGGCTGATTTTACC--AAACTGAGTCAACA--------G-------ACTA-TGAGACATTCCCACGCATAATAGGACCTCGCCCA-TCTGTTGG---GATAAA-TATATAATT---------GGTGGTGTTC----TAGTGTAC----TG-TC--ATTTCTTAAAATATGCC-C-------------------------------------------------------------TAACAATTATACTAGTTTGTCA-------------------------ATCT-ATAATTG---A-----------TTTA----
dm3 chr2L:13640916-13641159 - GGATTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTAT--CAAAACC------A--------AAGGATC--T--------T-GAAGGAATTATACGGAT-TTTTGCA--CTTCTGAGTAAACA--------T-------AATGGTGGGTTACTTCCACGCAGAATGGAGCCTCGCCCA-GCTGCTAA---AAAA-A-TTGTAAATT---------AATAATATTC----TAGCGTAT----G-TA----TT---TATGTTG-------------------------------------------------------------------TGGTAATAATATTCATTTAAAA-------------------------TGAG-------------TCTAAGCATC-TTT----
droSim2 2l:13236615-13236860 - dsi_25239 GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTAT--CAAAACT------A--------AAGGATC--C--------T-CAAGGAATTATACTGAT-TTTTGCA--CTTCTGAGTAAACA--------T-------ACTG--CGGTTACTCCCACGCAGAATGGAGCCTCGCCCA-GCTGCTAA---AAGA-A-TTGTAAATT---------AATAATATTC----TAGCGTAT----A-TA----TT---TATGTTG-------------------------------------------------------------------GCGTAATAATATGCATTTGAAA-------------------------TGAG-------------TCTAATCATC-TATTTAA
droSec2 scaffold_16:1776529-1776774 - GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTAT--CAAAACT------A--------AAGGATC--C--------T-CAAGGAATTATACTGAT-TTTTGCA--CTTCTGAGTAAACA--------T-------ACTG--CGGTTACTCCCACGCAGAATGGAGCCTCGCCCA-GCTGCTAA---AAGA-A-TTGTAAATT---------AATAATATTC----TAGCGTAT----A-TA----TT---TATGTTG-------------------------------------------------------------------GCGTAATAATATGCATTTGAAA-------------------------TGAG-------------TCTAATCATC-TATTTAA
droYak3 2L:10059785-10060027 - GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTAT--CAAAACC------G--------CAGGATC--C--------T-GAAGGAATTACACGGACATTTGGCA--CTTTAGAGCACTTC--------G-------ACTG--TGGTCACTCCCACGCAAGATTGAGCCTCGCCCA-GCTGCTAG---GAAATA-TTAGAAATT---------AGTAATCTTC----TAGGGTGT----A-CA----TT---TATATTA-------------------------------------------------------------------TGATAGTTATATTCACTTGACC-------------------------GGAG-------------TCTAATCAT--TTT----
droEre2 scaffold_4929:11817752-11817987 + GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGCCTGTGTAAGTAT--CAAAACC------A--------AAGGATC--C--------C-GCAGAAATTAGACG---------CA--CATTTGAGTAAACA--------G-------ACTG--AGGTTACTCCCACGCAAAGTGGAGCCTCGCCCA-GCTGCTAA---GAAATA-TTCGAAATA---------AGTAATCTTC----TATTGTGG----A-AA----AT---GATATTA-------------------------------------------------------------------TGGTGGCCATATTAATTCGACA-------------------------GGAG-------------TCTAATCGTCTTTT----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTACATCGTTT--TACTGCTTGAATAGAGT--TTT--ATAC------------------AG---------GCA--ACAACAAGTCACAA--------G-------AAGA--AACTCCCACCCACGCACTATTCAGCCTCGCCCA-ACAGCTGC---CAAGAA----TAAATC---------AGGGATACTTCTTC--------AT--TTTCGTCC---------TTTTGCC-TC--------------TGCAAATGCCTGCA---------------------------TTGAG---------------------AGTATCACAATGAAAATAG-CT--ACA-GA----------ATA----------TTGC----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................TTTGCC-TC--------------TGCAAATGCCTGC...................................................................................................................2113.0030300000000
.................GTCTCACCTCCTTCGAGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
............................................................................................................................................................................................................................................................................C---------TTTTGCC-TC--------------TGCAAATGCC......................................................................................................................2011.0010100000000
......................................................................................................................................AAGTCACAA--------G-------AAGA--AACTCCC..................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................ACAACAAGTCACAA--------G-------AAGA--A........................................................................................................................................................................................................................................................................2011.0010000001000
..............................CGAGGAGCTGCCCGGACTGT............................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................CACTATTCAGCCTCGCCCA-AC.....................................................................................................................................................................................................................................2111.0010100000000
..................TCTCACCTCCTTCGAGGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................CATCGTTT--TACTGCTTGAATA..............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................TTTTGCC-TC--------------TGCAAATGCCTG....................................................................................................................2111.0010100000000
.......................................................................................TT--ATAC------------------AG---------GCA--ACAACAAGTC...................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................TCCTTCGAGGAGCTGCCCGGACTG.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010000
............................................................................................TAC------------------AG---------GCA--ACAACAAGTCACA................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................TGC---CAAGAA----TAAATC---------AGGGAT.............................................................................................................................................................................................2111.0010100000000
.......GTGGAGAAGGGTCTCACCTCC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................ATCGTTT--TACTGCTTGAATAG.............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................T--TTTCGTCC---------TTTTGCC-TC--------------TGC.............................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................ATACTTCTTC--------AT--TTTCGTCC---------T.......................................................................................................................................................2111.0010000001000
........................................................................................................................................................................................................................................................................................TTGCC-TC--------------TGCAAATGCCTGCA---------------------------.......................................................................................2111.0010100000000
............................TTCGAGGAGCTGCCCGGACTT.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................ATTCAGCCTCGCCCA-ACAGC..................................................................................................................................................................................................................................2011.0010100000000
.......................CCTCCTTCGAGGAGCTGCCCGGACT..............................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
................GGTCTCACCTCCTTCGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................TTC--------AT--TTTCGTCC---------TTTTGC..................................................................................................................................................1920.5010001000000
droPer2
GGATCTGGTGGAGAAGGGTCTCACCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTACATCGTTT--TACTGCTTAAATAGAGT--TTT--ATAC------------------AG---------GCA--ACAACCAGTCACAA--------G-------AAGA--AACTCCCACCCACGCACAATTCAGCCTCGCCCA-ACAGCTGC---CAATAA----TAAATC---------AGTGATCCTTCTTC--------AT--TTTCGTCC---------TTTTGCC-TC--------------TGCAAATGCCTGCA---------------------------TTGAG---------------------TGTATCACAATGAAAATAG-CT--ACA-GA----------ATA----------TTGC----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................CTGCA---------------------------TTGAG---------------------TGTATCACAAT..................................................2111.001000010
................................AGGAGCTGCCCGGACTGT............................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...............................GAGGAGCTGCCCGGACTGT............................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
...TCTGGTGGAGAAGGGTCTCA.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.............................TCGAGGAGCTGCCCGGACTG.............................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................................................................................................................................................................................CTTCTTC--------AT--TTTCGTCC---------TTTT....................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................................................................................GTCC---------TTTTGCC-TC--------------TGCAAATG........................................................................................................................2111.001010000
...TCTGGTGGAGAAGGGTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.............................TCGAGGAGCTGCCCGGACTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
................................AGGAGCTGCCCGGACTGC............................................................................................................................................................................................................................................................................................................................................................................................1820.501100000
droWil2
GGACCTGGTCGACAAGGGTCTGGTGTCCTTCGAGGAGCTTCCAGGATTGTGTAAGTCT--AAAAAAC------A--------ATA--CTTAATTCAATTAAAACTAA------AAC---------CA--AA----AG----CC--------A-------ATCG--TCCTCACTCCCACGCACT-TTTAACCTCGCCCA-ACTGCAGATGCCACAAA-------------------A-----GTTC----TTTAA------------------------TCAT--------------------AGGG----------AATCCTTAATGAAATAAACCCTTTTAT----GGGGT-------------TTCGT-----------AGAATTATTTAGACA-AA----------ATG----------TCAT----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................CTTCGAGGAGCTTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.........CGACAAGGGTCTGGTGTCCTTCGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
........................GTCCTTCGAGGAGCTTCCAGG.................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
........................GTCCTTCGAGGAGCTTCCAGGA................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.GACCTGGTCGACAAGGGTCTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.....TGGTCGACAAGGGTCTGGTGTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.................GTCTGGTGTCCTTCGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
.....................................................................................................................................................................TCCTCACTCCCACGCACT-TTTAACC...............................................................................................................................................................................................................................................2511.00101000
droVir3
GGACCTCGTCGACAAGGGCCTGGTGTCCTTTGAGGAGCTGCCTGGCCTATGTAAGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................GTGTCCTTTGAGGAGCTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................2118.008001001000110000000000000000002000000000000000000000000000002000
......................GTGTCCTTTGAGGAGCTGCCTGGC................................................................................................................................................................................................................................................................................................................................................................................................2413.003001001000000000000000000000000000000010000000000000000000000000
.....................GGTGTCCTTTGAGGAGCTGCC....................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000000000010000001000000000000000000000000000000100
...................CTGGTGTCCTTTGAGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000020000000000000000000000000000000000000000000000000000000
....................TGGTGTCCTTTGAGGAGCTC......................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002000000000000000000000000000000000000000000000000000000000
.GACCTCGTCGACAAGGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000000000000000000000000000000000000000000000000000000000000
....................TGGTGTCCTTTGAGGAGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000100001000000000000000000000000000000000
...........................CTTTGAGGAGCTGCCTGGC................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000001000000000000000000000000000010
....................TGGTGTCCTTTGAGGAGCTGCCTGGC................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................TGTCCTTTGAGGAGCTGCCTG..................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000100000000000000000000000000000000000000000000000000000000
......................GTGTCCTTTGAGGAGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...................CTGGTGTCCTTTGAGGAGCTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
............................TTTGAGGAGCTGCCTGGCCT..............................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
...................CTGGTGTCCTTTGAGGAGCTGCCTGGC................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.GACCTCGTCGACAAGGGCCTG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............................TGAGGAGCTGCCTGGCCTATGT..........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..........................CCTTTGAGGAGCTGCCTGGC................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000100000000000000000000000000000000
.GACCTCGTCGACAAGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000100000000000000000000000000000000000000000000000000000
.......................TGTCCTTTGAGGAGCTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
...................CTGGTGTCCTTTGAGGAGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
................................AGGAGCTGCCTGGCCTATGTTC........................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
.......GTCGACAAGGGCCTGGTGTCC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...................CTGGTGTCCTTTGAGGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000100000000000000000000000000000
........................GTCCTTTGAGGAGCTGCCT...................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.GACCTCGTCGACAAGGGCCTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
.........................TCCTTTGAGGAGCTGCCTGGC................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................GTGTCCTTTGAGGAGCTGCCTGG.................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.GACCTCGTCGACAAGGGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
droMoj3
GGATCTTGTGGACAAGGGCCTAGTCTCCTTCGAGGAGCTGCCCGGACTGTGTAAGTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....CTTGTGGACAAGGGCCTAGTCT....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
....................TAGTCTCCTTCGAGGAGCTGCCCGGACTG.............................................................................................................................................................................................................................................................................................................................................................................................2911.001000010
droGri2
GGACCTCGTTGACAAGGGCCTGGTGTCCTTCGAGGAGCTGCCAGGACTCTGTGAGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........ACAAGGGCCTGGTGTCCTTCGAGGAGCTGC.....................................................................................................................................................................................................................................................................................................................................................................................................3011.00101
droAna3
GGACCTGGTGGACAAGGGGCTCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTAT--CGTTTC--AAGGCTTCAA-----------------------------------------ATTCTGAC--AAATTCTCTAAAA-----------------TCAA-AGTGTAACTCCCACGCAAA-CCAAACCTCGCCCA-ACTGCTTG---AAATAA-TTCCTAA--AACAATTTC--------------TTAAATTCATATTA---ACG---------TTATAAA-ACTGTAATATCTTCTATAAAAACATCAA--AATCTTTT---------------------------------------------A--------------AAAG-TT--GTA-TG----------GTT----------TTAT----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GGACCTGGTGGACAAGGGTATCAGCTCCTTTGAGGAGCTCCCAGGATTGTGTAAGTAT--CATTT--AAGTGCTTAA----------------------------------------------------AAATTGAAGAAATT--------CCCTACAATCAA-AGTGTAACTCCCACGCAA-ATGAAACCTCGCCCA-ACTGTTTT---AAAGAA-CTTCTTA--AATAGTTTC--------------TTAAATTAATATTT---TCA---------TTATTAAATTTGTAATATCTTCTATGAAAATACCTA--AATCTTTAAAGAGTTGAATGGTTTTAT------------------------------------------------------GA----------ATA----------TAAA----SizeHit CountTotal NormTotal
No Reads
droKik1
GGACTTGGTGGACAAGGGCCTGAGCTCCTTCGAGGAGCTGCCCGGATTGTGTAAGTAT--CAGGATT------A--------AGA----------------------------ACTAAT--TTTCCCCTAATGTAGGAGAACAACTCGCTTT-------GCTG--AGGACACTCCCACGCAAAATGAGACCTCGCCCA-AA-----------ACAA----CAAAAC---------GGATACATTTCTCC--------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GGATCTGGTGGACAAGGGTCTAACGTCCTTTGAGGAGCTCCCTGGACTGTGTAAGTAA--CAAAACC------A--------AAATGTT--T--------G-GAATAAGGAAAATCGTTGTTTTCCA--AAGTTAAGTGAACA--------T-------CCTA--CAGACACTCCCACGCAAAATAGGGCCTCGCCCA-GCTGTTGA---GATTAA-CTTCAAATT---------AGTAATGTTT----AAATGTTT----T-TAG--TTAACTTTACCATTGCA-TT-------------------------------------------------------------TGCACTTACCTTAATCTGAGA-------------------------GATG---------------TAATTTTC-TTA-TTGSizeHit CountTotal NormTotal
No Reads
droEle1
GGACCTGGTGGATAAAAATCTGTCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTAT--CGAAATT------A--------ATG---------------------AAGTTAAGTTTGCATTGTACG--AAAGTGAGTCAATG--------G-------GCGG--TTGACACTCCCACGCAAAATAAGACCTCGCCCA-GATGTTGA---GAAAAA-TTCAAGATT---------AGTTATGTTC----TTTCGTTT----TA-TT--ATT---AAAATAATA---------------------------------------------------------------------CTTTATTTTAGTTTGTTA-------------------------ACTC-TTAAGTGGCATT----------CTGT----SizeHit CountTotal NormTotal
No Reads
droRho1
GGATCTGGTGGACAAGGGGCTATCGTCCTTCGAGGAGTTGCCTGGATTGTGTAAGTAT--TGAATTT------A--------AGC---------------------AATTTAAGTGCTTATTTTAAA--AAACTGACTCAACG--------G-------GATA--TAGACACTCCCACGCTAAATGAGACCTCGCCCA-GCTGTTGT---GAAAAACTTTAAGTTT---------TGTAATATTC----TTGTGTTC----TA-TC--ATT---TAAATAAT-------------------------------------------------------------------G--GGTAATATTTATTTGCTA-------------------------AGAA-TTAATTG---TG----------CTAT----SizeHit CountTotal NormTotal
No Reads
droBia1
GGACCTGGTGGACAAGGGTCTGACGTCCTTTGAGGAGATGCCTGGGCTGTGTAAGTAA--TGAAATT------A--------GT--TTT--T--------AAAAAGAAGTCAAATGGTTATTTTGCA--AAATTGAGTCAACA--------C-------ACTG--CAGACACTCCCACGCAAAA-AGGGCCTCGCCCCAGCTGTGCA---GAAATG-TGAAAAATT---------AGTAATTTTC----TTTGAC---------AC--ATTATGAAGTGTA--------------------------------------------------------------TTGGTTGGTTTCAATAAT----------------------AATTG--T--ACA-GATTACATTG---AG------------TT----SizeHit CountTotal NormTotal
No Reads
droTak1
GGATCTGGTGGACAAGGGGCTGTCATCCTTCGAGGAGTTGCCCGGGTTGTGTAAGTAT--CAAATTTGAACTCTGTATTAA---------------------AACTATGTTCTAGTGTAATTTAGCA--AAACTGAGACAAAA--------G-------ACCC-ACAGCCACTCCCACGCAAAA-------TCGCCCA-GATGTTCA---GAAAAA-CTTAAAATT---------AGTAATGTTC----TTGTGTAC----TG-TC--ATTATTCAAATCATTCG-T-------------------------------------------------------------TGGTAATTATATTATTATGT-A-------------------------GAAATTACATC---GCG----------GTTT----SizeHit CountTotal NormTotal
No Reads
droEug1
GGATTTGGTCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGCTTGTGTAAGTAT--TAAATTC------A--------GT--CTT--A--------AAAAATAAGTTAAAGGCTGATTTTACC--AAACTGAGTCAACA--------G-------ACTA-TGAGACATTCCCACGCATAATAGGACCTCGCCCA-TCTGTTGG---GATAAA-TATATAATT---------GGTGGTGTTC----TAGTGTAC----TG-TC--ATTTCTTAAAATATGCC-C-------------------------------------------------------------TAACAATTATACTAGTTTGTCA-------------------------ATCT-ATAATTG---A-----------TTTA----SizeHit CountTotal NormTotal
No Reads
dm3
GGATTTGGCCGACAAGGGGCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTAT--CAAAACC------A--------AAGGATC--T--------T-GAAGGAATTATACGGAT-TTTTGCA--CTTCTGAGTAAACA--------T-------AATGGTGGGTTACTTCCACGCAGAATGGAGCCTCGCCCA-GCTGCTAA---AAAA-A-TTGTAAATT---------AATAATATTC----TAGCGTAT----G-TA----TT---TATGTTG-------------------------------------------------------------------TGGTAATAATATTCATTTAAAA-------------------------TGAG-------------TCTAAGCATC-TTT----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................ATTATACGGAT-TTTTGCA--CTT..........................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
......GGCCGACAAGGGGCTGTCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000
...TTTGGCCGACAAGGGGCTGTCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000
..............................................................................................................TATACGGAT-TTTTGCA--CTTCTGAGT....................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................A--------AAGGATC--T--------T-GAAGGAATTAT.............................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................GTCGTCCTTCGAGGAGTTGCC....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................CTTCGAGGAGTTGCCCGGACTGTTC..........................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTCGTCCTTCGAGGAGTTGCCCGG.................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000
.GATTTGGCCGACAAGGGGCTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000
................................................................................................................................................................................ACGCAGAATGGAGCCTCGCCC.........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................CTTCGAGGAGTTGCCCGGACTGTG...........................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................TGTCGTCCTTCGAGGAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGGGGCTGTCGTCCTTCGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................TCCTTCGAGGAGTTGCCCGGAAA..............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCGACAAGGGGCTGTCGTCCTTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGTCCTTCGAGGAGTTGCCC...................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................GAGTTGCCCGGACTGTGTAAG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTTGGCCGACAAGGGGCTGTCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAAGGGGCTGTCGTCCTTCGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................CTGAGTAAACA--------T-------AATGGTGGG......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTCGAGGAGTTGCCCGGACT..............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................TGGAGCCTCGCCCA-GCTGCT.................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGGCTGTCGTCCTTCGAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....TGGCCGACAAGGGGCTGTCGT....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CGTCCTTCGAGGAGTTGCCCGGACTG.............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TGTAAATT---------AATAATATTC----TAGCGTA..............................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AGGAGTTGCCCGGACTGT............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CCGACAAGGGGCTGTCGTCCTTCGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CAGAATGGAGCCTCGCCCA-GC.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................CCTTCGAGGAGTTGCCCGGAC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
................................AGGAGTTGCCCGGACTGTG...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................TT---------AATAATATTC----TAGCGTAT----G-.......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....................TGTCGTCCTTCGAGGAGTTGCCCGGA................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................AAACC------A--------AAGGATC--T--------T-GAAGGAA.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........GACAAGGGGCTGTCGTCCTTCGAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................TCGTCCTTCGAGGAGTTGCCC...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TTATACGGAT-TTTTGCA--CTTC.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GATTTGGCCGACAAGGGGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCTGTCGTCCTTCGAGGAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............AAGGGGCTGTCGTCCTTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAGGAGTTGCCCGGACTGTG...........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................ACGCAGAATGGAGCCTCGCCCA-GCTGCT.................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ATTTGGCCGACAAGGGGCTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTCCTTCGAGGAGTTGCCCGGACTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........CGACAAGGGGCTGTCGTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........GACAAGGGGCTGTCGTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GGGCTGTCGTCCTTCGAGGAGTTGCCCG..................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................................................................................................GTTACTTCCACGCAGAATGGA..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................GCTGTCGTCCTTCGAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTCGAGGAGTTGCCCGGACTGTG...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGTAT--CAAAACC------A--------AAGGAT......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TATTC----TAGCGTAT----G-TA----TT---TATGTA......................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CAAGGGGCTGTCGTCCTTCGAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGGGGCTGTCGTCCTTCGAGGAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTCCTTCGAGGAGTTGCCCG..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAGGAGTTGCCCGGACTG.............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TGAGTAAACA--------T-------AATGGTGGGT.....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TATACGGAT-TTTTGCA--CTTC.........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............AGGGGCTGTCGTCCTTCGAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CTTCGAGGAGTTGCCCGGACTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................................................................................................................................................................................GAGCCTCGCCCA-GCTGCTAA---A...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................AGTAT--CAAAACC------A--------AAGGATC--...................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCGACAAGGGGCTGTCGTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTCGTCCTTCGAGGAGTTGC.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................GAATGGAGCCTCGCCCA-GCTG...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........GACAAGGGGCTGTCGTCCTTCGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................GAGGAGTTGCCCGGACTGTTC..........................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAGGAGTTGCCCGGACTGTTCT.........................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTAT--CAAAACT------A--------AAGGATC--C--------T-CAAGGAATTATACTGAT-TTTTGCA--CTTCTGAGTAAACA--------T-------ACTG--CGGTTACTCCCACGCAGAATGGAGCCTCGCCCA-GCTGCTAA---AAGA-A-TTGTAAATT---------AATAATATTC----TAGCGTAT----A-TA----TT---TATGTTG-------------------------------------------------------------------GCGTAATAATATGCATTTGAAA-------------------------TGAG-------------TCTAATCATC-TATTTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................TGCCCGGACTATGTAAGTAT--C.................................................................................................................................................................................................................................................................................................................................................................................2117.00761000000000000000
.GATTTGGCCGACAAGGGACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2212.00202000000000000000
......................................................GTAT--CAAAACT------A--------AAGGAT......................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.....................................TTGCCCGGACTATGTAAGT......................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
....TTGGCCGACAAGGGACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...................CTGTCGTCCTTCGAGGAGTTGCC....................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
..ATTTGGCCGACAAGGGACTGTC......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
................GGACTGTCGTCCTTCGAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
..ATTTGGCCGACAAGGGACTG........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
droSec2
GGATTTGGCCGACAAGGGACTGTCGTCCTTCGAGGAGTTGCCCGGACTATGTAAGTAT--CAAAACT------A--------AAGGATC--C--------T-CAAGGAATTATACTGAT-TTTTGCA--CTTCTGAGTAAACA--------T-------ACTG--CGGTTACTCCCACGCAGAATGGAGCCTCGCCCA-GCTGCTAA---AAGA-A-TTGTAAATT---------AATAATATTC----TAGCGTAT----A-TA----TT---TATGTTG-------------------------------------------------------------------GCGTAATAATATGCATTTGAAA-------------------------TGAG-------------TCTAATCATC-TATTTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................CCTTCGAGGAGTTGCCCGGACT..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.....................................................................................................................................................................................GAATGGAGCCTCGCCCA-GCTG...................................................................................................................................................................................................................................2111.0010100
..ATTTGGCCGACAAGGGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.................GACTGTCGTCCTTCGAGGAGTTGCC....................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
..ATTTGGCCGACAAGGGACTGTCGT....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.....TGGCCGACAAGGGACTGTCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.................GACTGTCGTCCTTCGAGGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.................GACTGTCGTCCTTCGAGGAGTT.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...............................................................................................................................................................................................................................................ATATTC----TAGCGTAT----A-TA----TT---TATG........................................................................................................................................................2311.0010001
.....................................TTGCCCGGACTATGTAAGTAT--..................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
droYak3
GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGACTGTGTAAGTAT--CAAAACC------G--------CAGGATC--C--------T-GAAGGAATTACACGGACATTTGGCA--CTTTAGAGCACTTC--------G-------ACTG--TGGTCACTCCCACGCAAGATTGAGCCTCGCCCA-GCTGCTAG---GAAATA-TTAGAAATT---------AGTAATCTTC----TAGGGTGT----A-CA----TT---TATATTA-------------------------------------------------------------------TGATAGTTATATTCACTTGACC-------------------------GGAG-------------TCTAATCAT--TTT----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................AGAGCACTTC--------G-------ACTG--TGGTCACTCCCAC............................................................................................................................................................................................................................................................2811.00101000000000
......................TCGTCCTTCGAGGAGTTGCCCGGA................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.......................................................................................................................................................................................................................A-TTAGAAATT---------AGTAATCTTC----TAGGGTGT----.........................................................................................................................................................................2811.00100000010000
.....................GTCGTCCTTCGAGGAGTTGCC....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
............................................................................................................................................................................................................................GAAATT---------AGTAATCTTC----TAGGGTGT----A-.......................................................................................................................................................................2511.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................TAGTTATATTCACTTGACC-------------------------GG.................................2111.00101000000000
..............AGGGCCTGTCGTCCTTCGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
............................TTCGAGGAGTTGCCCGGACT..............................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................................................................................................................................................................................AAGATTGAGCCTCGCCCA-GCT....................................................................................................................................................................................................................................2111.00100000010000
.GACCTGGTCGACAAGGGCCTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEre2
GGACCTGGTCGACAAGGGCCTGTCGTCCTTCGAGGAGTTGCCCGGCCTGTGTAAGTAT--CAAAACC------A--------AAGGATC--C--------C-GCAGAAATTAGACG---------CA--CATTTGAGTAAACA--------G-------ACTG--AGGTTACTCCCACGCAAAGTGGAGCCTCGCCCA-GCTGCTAA---GAAATA-TTCGAAATA---------AGTAATCTTC----TATTGTGG----A-AA----AT---GATATTA-------------------------------------------------------------------TGGTGGCCATATTAATTCGACA-------------------------GGAG-------------TCTAATCGTCTTTT----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........CGACAAGGGCCTGTCGTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..................CCTGTCGTCCTTCGAGGAGTTGCCCGG.................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...CCTGGTCGACAAGGGCCTGTCGTC...................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
.......GTCGACAAGGGCCTGTCGTCCTTCGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000100

Generated: 05/18/2015 at 12:31 AM