ID:

dps_1361

 Coordinate:

4_group1:1530274-1530424 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.4 -19.2 -19.2

Flybase annnotation

CDS [Dpse\GA21865-cds]; exon [dpse_GLEANR_16715:2]; intron [Dpse\GA21865-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAATATAGTTGTAACTAAAGTTTAAGTTCAATGTTAGGAAGATGTGGGGAGAGTGGAATGAAAGTGATTTGTTTCATTTTAGCTTAATTTGTTTTATATTTAGCGGCCGTGCGTTTAACAATTGGTCGGCTGCCAGTGTTGCCAGCGCACGCGTTCGGCTTTCACTTGTCAAAAAATGTAAGCAAAGCGCCACG
*******************************************************************************.......(((((.....((((..((..(((((((((((((.....)))))))))))))..))..)))).....)))))...((((((.............)))))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M059
embryo
 GSM343916
embryo
 SRR902011
testis
 GSM444067
head
 SRR902012
CNS imaginal disc
.........................................................................................GCTAGGGCGATGTGGGGAGAGT............................................................................................................................................ 22 3 1 2.00 2 2 0 0 0 0 0 0
................TATACTGCCGGAAATTGCAAAGCC................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
....................CTGCCGGAAATTGCAAAGCC................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................TAAGTTCAATGTTAGGAAGAT....................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................GTGCGTTTAACAATTGGTCGG................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................TTGCAAAGCCCGAGCGCAA.......................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................TTTTATATTTAGCGGCCGGGC.................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
............................AATTGCAAAGCCCGAGCGCAAGATCC..................................................................................................................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AGGAAGATGTGGGGAGAGTT........................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TTAGGAAGATGTGGGGAGAGT............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................GGAGAGTGGAATGAAAGTGA............................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................TGCCAGTGTTGCCAGCGCACG........................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................ATTTGTTTTATATTTAGCGGC....................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
...............................TGCAAAGCCCGAGCGCAAGG........................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCAAAAAATGTAAGCAAAGCG..... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................CGTGCGTTTAACAATTGGTCG.................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................AATGTTAGGAATATGTGGGG................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
................................GCAAAGCCCGAGCGCAAGAT....................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.............................ATTGCAAAGCCCGAGCGCAAG......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................GTGGAATGAAAGTGATTTGTT......................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..........................................AGCGCAAGGTGTGTATAATAT............................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................AAAGTTTAAGTTCAATGTTAG............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...............GTATACTGCCGGAAATTGCAAAGCCCGAC............................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................TTTATATTTAGCGGCCGTGC.................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
.........................GGAAATTGCAAAGCCCGAGCGCAAG......................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................GTTTAACAATTGGTCGGCTG.............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
..............................TTGCAGGGCCCGAGCGCAAGG........................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0 0 0 0
...AACCCTTCTGCAGTATACTGCCG................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................TTTAGCGGCCGTGCGTTTAAC........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................TTTAAGTTCAATGTTAGGAAA......................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.................ATACTGCCGGAAATTGCAA....................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................TGCAAAGCCCGAGCGCAAG......................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0
..............AGTATACTGCCGGAAATTG.......................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................TGCAAAGCCCGAGCGCAAGATCC..................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
..............................TTGCAAAGCCCGAGCGCAAGG........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................TAGGATTGCACTTGTCAAAAA................... 21 3 3 0.67 2 0 0 0 0 2 0 0
...........................................................................................TAGGGCGATGTGGGGAGAG............................................................................................................................................. 19 2 2 0.50 1 1 0 0 0 0 0 0
................................GCAAAGCCCGAGCGCAAGATCC..................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0
...........................................................................AGTTTTGGTTCATTGTTAGGA........................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
.........................................................................................GCTAGGGCGATGTGGGGAGA.............................................................................................................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0
.................................................GGTGTCTCTAATGTAGTTGT...................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 1 0
.............................................................................................GGGCGATGTGGGGAGAGT............................................................................................................................................ 18 2 11 0.09 1 1 0 0 0 0 0 0
........................................................................................................................................................TTATTTAGCGGCCGTCC.................................................................................. 17 2 11 0.09 1 0 0 0 0 0 0 1
..........................................................................................CTAGGGCGATGTGGGGAGA.............................................................................................................................................. 19 3 19 0.05 1 0 1 0 0 0 0 0
TTGAAACCTTCTGCAGTAAA....................................................................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

AATTTGGGAAGACGTCATATGACGGCCTTTAACGTTTCGGGCTCGCGTTCCACACATATTATATCAACATTGATTTCAAATTCAAGTTACAATCCTTCTACACCCCTCTCACCTTACTTTCACTAAACAAAGTAAAATCGAATTAAACAAAATATAAATCGCCGGCACGCAAATTGTTAACCAGCCGACGGTCACAACGGTCGCGTGCGCAAGCCGAAAGTGAACAGTTTTTTACATTCGTTTCGCGGTGC
*****************************************************************.......(((((.....((((..((..(((((((((((((.....)))))))))))))..))..)))).....)))))...((((((.............)))))).******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
....................................................................................................................................................................................CCAGCCGACGGTCACAACGGTC................................................. 22 0 1 2.00 2 2 0
..........................................................................................................................................................................................................GCGTGCGCAAGCCGAAAGTGA............................ 21 0 1 1.00 1 1 0
.........................................................................................................................................................................................TGACGGTCACAACGGTCGCGT............................................. 21 1 1 1.00 1 1 0
.....................................................................................................................................................................................CAGCCGACGGTCACAACGGT.................................................. 20 0 1 1.00 1 1 0
...................................TTCGGGCTCGCGTTCCACACA................................................................................................................................................................................................... 21 0 1 1.00 1 1 0
.....................................................................................................ACCCCTCTCACCTTACTTTCA................................................................................................................................. 21 0 1 1.00 1 1 0
.............................................................................................................................................................................................GGTCACAACGGTCGCGTG............................................ 18 0 1 1.00 1 1 0
................................................................................................................................................................GCCGGCACGCAAATTGTTAA....................................................................... 20 0 1 1.00 1 1 0
..............................................................................................................................................................TCGCCGGCACGCAAATTGTT......................................................................... 20 0 1 1.00 1 1 0
.................................GTTTCGGGCTCGCGTTCCACA..................................................................................................................................................................................................... 21 0 1 1.00 1 1 0
.................................................................................................................................................................CCGACACGCAAGTGGTTAA....................................................................... 19 3 20 0.10 2 2 0
.....................................................................................................................................................................................................................................TGTTACATTCGTGTCACGGT.. 20 3 13 0.08 1 0 1
...........................................................................................................................................................................AAATGTAAACCAGCCGACCGT........................................................... 21 3 16 0.06 1 1 0
....................................................................................................CACCCCTCTCAACCTAATT.................................................................................................................................... 19 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:1530224-1530474 - dps_1361 TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTT---AA-G-----------------------TT-CAATGTTAGGAAGATGTGGG--GAGAGTG----------------------------------------------GAATGAAAGTG-A-T------------------------------------TTGTTTCATTTTA--GC-TTAATTTGTTTTA-------------------------------TATTTAGCGGCCGT------------------------------------GCGTTTAACA---------------------------ATTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACG
droPer2 scaffold_5:3676503-3676752 + TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTT---AA-G-----------------------TT-CAATGTTAGGAATATGTGG---GGGAGTG----------------------------------------------GAATGAAAGTG-A-T------------------------------------TTGTTTCATTTTA--GC-TTAATTTGTTTTA-------------------------------TATTTAGCGGCCGT------------------------------------GCGTTTAACA---------------------------ATTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACG
droWil2 scf2_1100000004884:586071-586359 - TCAAACCCTTTTGCAGTATATTACCTGAAATTGCAAAGCCGGAGCGTAAGGTGCGTATGA----------A-------AA-GT-------ATTAAATA----TTGATAAAACGATTTGCATTGGAGTGTTTAGCTT-TC----------------C-TAGATTGCTC-TGCATA--TT-------------------------------------------T-TT-GACA-----------------TACATATAT--------G-TATAATATATATGT--------TTTTAA----------------------TATTTG--CCAATTAGTTA----------------AGTGTCTGTTTTTTGGTTTCTTTTC----------------ACCG------------------TCA-C-CA---CTGCCAGTGTTACCATCGCTTACGTTT-TATTCTCTTGCTTTCACTTGTCGGAAAA-A--AAACAAATGCGCCACG
droVir3 scaffold_12723:4486438-4486686 - dvi_1670 TCAAGCCCTTCTGCAGTATACTGCCTGAAATTGCAAAGCCCGAACGCAAGGTGTGTATAA----------G-------T-----------ATTGATTA----AGAGTATATTTATTAG-----------CAATG--GTT----------------A---AATTAACG-TGGCA-------------------------------------------A--------A---------------------AGCTGTGAT--------------TTATAAA-GTGTGTTTTT-TTT--------------------------------------------TTT-TTTTGG--TTTGG------------TT-------TGTGC---------GTT-TTCG----TATCGTA-TTTGCTTTG-CT-----GTGCCAGTGTTGCCAGCGCACGCGTTATTTTT--TTTGCTTTCACTTGTCAG---T-C--GAA--T--GCGCCACG
droMoj3 scaffold_6500:7571891-7572147 + TCAAGCCCTTCTGCAGTATACTGCCAGAAATTGCAAAGCCAGAGCGCAAGGTATGTAGAATTACCA---AAAG-----A-------CAGCTAT----A----TGTATATATTTCTTTA-----------C--GT--ACT----------------A---AATTACAG-T-------------------------------------GTC------AA--------A---------------------AAGTGTAATTTGTGATG--AACT----------------------------------------------------------CTTTTGGTTTT-TCGGTG--TTTAA------------TT-------TGCGT---------TT---ATA----TATCGTA-TTTGATTTG-CAGT---GCACCAGTGTTGCCAGCGCACGCGTTT-TTTAGGTTTGCTTTCACTTGTCGG---T-T--GAA--T--GCGCCACG
droGri2 scaffold_15126:3440879-3441113 - TCAAGCCCTTTTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGAGTAAA-----------------------------------------------------------------------------CCC----------------A---GATA--------TATATATTGTTAAATATTTATATGAAAAGTT----GCT------AA--------A---------------------ACCTAAGATTTATGCTG--TGC-TTGTGAA-ATTTGAG---------------------------------------------------------------TTTAA------------TG-------TGTGC---------ATT-TCAA-----TGTCGTTTTTGGTACG-CTGG---GCGCCAGTGTTGCCAGCGCGCACGTTT--------TTGCTTTCACTTGCCAG---C-C--GAA--T--GCGCCACG
droAna3 scaffold_12916:13601957-13602216 + TCAAGCCTTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATTATAACTAA-----CTAATAAGTATTAAG---------------------------------TGAAG--TCC----------------A---GTAA--------CATTTTTTGTGG-------------------TAGTGTCTTT-AACGA-------------------------------------------------------AAAA-GTG-CATTTTGTTTGT-------------------------------TAATTTGCGGCGTT-TTTCTGT-TTTCT------------GC-------TGCCC---------CTT-ACCC------------CTCCCCCTG-AGACC--AGTCCAGTGTTGCCAGCGCACGG--------G--GTGGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACG
droBip1 scf7180000396535:573732-573988 + TCAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATCAAAACTGA-----ATAATAAGTATTAAG---------------------------------TAAAG--TCT----------------A---GAAA--------CATTTTTTGTGG-------------------TAGTGTCTTTGAAA---------------------------------------------------------AAAA-GTG-CAATTTGTTTGT-------------------------------TAATTTGCGGCGTT-TTTCTGT-TTT--------------CG-----TCTCCCT---------ATT-ACCC----------------CCTCC-CCCTCAGTGTTCAGTGTTGCCAGCGCACGG--------G--GTTGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACG
droKik1 scf7180000302590:45083-45359 - TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATAA-------------G-A-----------------------CT-TATTCTTTGGCTTAAGTAA----------------------------------------------------------------------GGAGTTCCCTGAGTCTGCGTT----------------GAGT--AA--ATAA-CCA-CATTCAATTAAATAATTATGCACTATTTTCTTGTGATTTGTAATAATTTTC---TAC------------------------------------GAGTTTCCCC---------------------------TACATGC-AT---CTGCCAGTGTTGCCAACACACGCGTTT-GGTG--GTGGCTTTCACTTGTAGAAAAA-TGTGAA--CA-TCGCCACG
droFic1 scf7180000453973:70195-70459 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TTTGAAGTTAAATTTT-------------AAGG------------------CAATG--TGT----------------G---CGGAGTTT-TTCCACCT--------------------------------------------GTAT--A------------------------------------GTCAT--TTGTAAA-GTTTGATTTTGACAGA-------------------------------TAATTAGCGGCTTT-TCTCTG--TTTTA------------CG-------TGTGT---------TTTTTCGG-----AGGCAATCTCCCCCTA-CT-C---TGACCAGTGTTGCCAGCGCACGCGTTT-TATG--GTTGCTTTCACTTGTCAAAAAG-T--GAA--CA-TCGCCACG
droEle1 scf7180000490970:488287-488553 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCAGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATG-C---------------------------------CAAAG-GTCT----------------T---GGCAGTT--TCCCAACA--------------------------------------------GTGC--T------------------------------------GTGTTTCTTGTAA---TTAAAATTTGGCTTA-------------------------------CAATTAGCGGCTTT-TCTCCGTGTTTAA------------CG-------TGTGT-----GTTTTTT-TCTG-----AGGTAATCTCCCCCCA-CT-T---TTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAC-T--GAT--CA-TCGCCACG
droRho1 scf7180000779524:176813-177077 - TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TCTTTATTTTAAT--AAG---------------------------------CAAAACGTCT----------------A---GGGA-TTT-TCCCAACA--------------------------------------------ATGC--A------------------------------------GTGTTTGGTGTAA---TTCGCATCTGGTGTT-------------------------------CAATTAGCGGCTTT-TCACCGT-TTTTA------------CG-------TGTAT-----AA--TTT-GCCGA----AGTTAATATACCCCTA-CT-T---CTGCCAGTGTTGCCAGCGCACGAGTTT-TAGT--GTTGCTTTCACTTGTCAAAAAC-T--GAA--CA-TCGCCACG
droBia1 scf7180000302422:2996002-2996267 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATAA----------C-----AAGCGTTGATTCGAGGG--T---------------------------------TAAAGTT-CT----------------C---GAGAATGCATCGCAA--G--------------------------------------------TG-T-GGTG------------------------------------TCCCCAGAAAT-GTTTTAAGCAGTGTGG-------------------------------AAACTAGCGGTCTT-TCTGCGT-TT--T------------TG-------TGAGT---------TTTCCCTGAAGTGAGCTAATCTC--TCAA-CT-T---TGGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAA-G-C--GAA--CA-TCGCCACG
droTak1 scf7180000415858:224552-224817 + TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATGA----------A-----AATCCTTAATTCAATAG--A---------------------------------CAAAATA-CC----------------C---TAGAGTCT-CCCCAA--A-------------------------------------------GTG-T-GGTG------------------------------------TTTCATGAAAT-GCACAAATTTCTCTAA-------------------------------CAATTAGCGGCCTT-CCTTGGT-T--TA------------CG-------TGTGT-----GT--TTT-CCTGA----GGGTTATCTCCCCCGA-CT-T---TGACCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAT-T--GAA--CA-TCGCCACG
droEug1 scf7180000409463:1904738-1904997 - TCAAACCCTTCTGCAGTATACTGCCAGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------CCTTTTTTCTAATG--AT---------------------------------CAAAG--TCTA---------------T---GGTAATAG-G--CATTATT-------------------------------------------T-G--GGTG------------------------------------TTTCATTAAAA-GCTCAAATATGTCGAA-------------------------------TAATTTGCGGCTTT-TTTATG--TTGTA------------CG-------TGTAT---------CTT-ACCG-----AGCTAATCTCCCCCTA-C-CT---TTGCCAGTGTTGCCAGCGCACGCGTTT-CGTG--GTTGCTTTCACTTGTCAAAA-T-T--GAA--CA-TCGCCACG
dm3 chr2L:6479818-6480083 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT---------------------------------CAAAG--TGT----------------A---GCTAGTTA-TCCCAA--TT-------------------------------------------G-CT-GCTG------------------------------------TACCATGTAAT-GTTCGAATTTTCCCAA-------------------------------CAATTTGCGGCTTT-TCTCGTC-TTATA------------CG-------TGTGT---------TTT-TCCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCCCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACG
droSim2 2l:6254761-6255026 - dsi_27312 TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT---------------------------------CAAAG--TGT----------------A---GCTAGTTA-TCCCAA--TT-------------------------------------------G-CT-GCTG------------------------------------TATCATGTAAT-GTTCGAATTTTCCCAA-------------------------------CAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGTGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACG
droSec2 scaffold_5:4529110-4529375 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAAATAGATGTAAT---------------------------------CAAAG--TGT----------------A---GTTAGTTA-TCCCAA--TT-------------------------------------------G-CT-GCTT------------------------------------TACCGTGTAAT-GTTCGAATTTTCCCAA-------------------------------CAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACG
droYak3 2L:6436782-6437047 + TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGTAAGGTGTGTATTA----------A-------ATCGTAATTAGATGTAAT---------------------------------CACAG--CCC----------------A---GATTATTG-TCCCAA--TT-------------------------------------------T-GT-GCTG------------------------------------TACCATGTAAA-TATCTAATTTTCCCAA-------------------------------CAATTAGCGGCTTT-TCTCAGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAGTT--GAA--CA-TCGCCACG
droEre2 scaffold_4929:15388657-15388923 - TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT---------------------------------CAAAG--GCC----------------A---GATTATTG-CCCCAA--TT-------------------------------------------T-GT-GCTG------------------------------------TGCCATGTAAA-GTTCGAATTTTCCCAA-------------------------------CAATTAGCGGCTTTTTCTCTGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCCTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAATT--GAA--CA-TCGCCACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTT---AA-G-----------------------TT-CAATGTTAGGAAGATGTGGG--GAGAGTG----------------------------------------------GAATGAAAGTG-A-T------------------------------------TTGTTTCATTTTA--GC-TTAATTTGTTTTA-------------------------------TATTTAGCGGCCGT------------------------------------GCGTTTAACA---------------------------ATTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................TATACTGCCGGAAATTGCAAAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
....................CTGCCGGAAATTGCAAAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................T---AA-G-----------------------TT-CAATGTTAGGAAGAT.............................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................GT------------------------------------GCGTTTAACA---------------------------ATTGGTC-GG---............................................................................2111.0010100000000
..............................TTGCAAAGCCCGAGCGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
................................................................................................................................................AGGAAGATGTGGG--GAGAGTT----------------------------------------------.................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................TTAGGAAGATGTGGG--GAGAGT................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
............................................................................................................................................................G--GAGAGTG----------------------------------------------GAATGAAAGTG-A-...................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGTGTTGCCAGCGCACG......................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................ATTTGTTTTA-------------------------------TATTTAGCGGC.....................................................................................................................................................................2111.0010000001000
...............................TGCAAAGCCCGAGCGCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAAA-TGTAAGCAAA-GCG.....2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................CGT------------------------------------GCGTTTAACA---------------------------ATTGGTC-G................................................................................2111.0010100000000
.............................ATTGCAAAGCCCGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................GTG----------------------------------------------GAATGAAAGTG-A-T------------------------------------TTGTT.........................................................................................................................................................................................................................................2111.0010000001000
..........................................AGCGCAAGGTGTGTATAA----------T-------A-------T..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................................................................................................AAAGTTT---AA-G-----------------------TT-CAATGTTAG...................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............GTATACTGCCGGAAATTGCAAAGCCCGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
..................................................................................................................................................................................................................................................................................................TTTA-------------------------------TATTTAGCGGCCGT------------------------------------GC............................................................................................................................2011.0010100000000
.........................GGAAATTGCAAAGCCCGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................GTTTAACA---------------------------ATTGGTC-GG---CTG.........................................................................2011.0010100000000
...AACCCTTCTGCAGTATACTGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................................................................................................................................................................................................................................................................................................................................TTTAGCGGCCGT------------------------------------GCGTTTAAC.....................................................................................................................2111.0010100000000
.....................................................................................................TTT---AA-G-----------------------TT-CAATGTTAGGAAA...............................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................ATACTGCCGGAAATTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................TGCAAAGCCCGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..............AGTATACTGCCGGAAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................TTGCAAAGCCCGAGCGCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------T-------A-------TAGTTGTAACTAAAGTTT---AA-G-----------------------TT-CAATGTTAGGAATATGTGG---GGGAGTG----------------------------------------------GAATGAAAGTG-A-T------------------------------------TTGTTTCATTTTA--GC-TTAATTTGTTTTA-------------------------------TATTTAGCGGCCGT------------------------------------GCGTTTAACA---------------------------ATTGGTC-GG---CTGCCAGTGTTGCCAGCGCACGCGTTC---------GGCTTTCACTTGTCAAAAAA-TGTAAGCAAA-GCGCCACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................AATTGCAAAGCCCGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.003300000
..............AGTATACTGCCGGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTC---------GGCTTTCACTTGTC..........................1812.002200000
.........................GGAAATTGCAAAGCCCGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........TGCAGTATACTGCCGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGTTC---------GGCTTTCACTT.............................2111.001001000
.............................................................................................................................................................................................................................................................................................TTTGTTTTA-------------------------------TATTTAGCGGCCG...................................................................................................................................................................2211.001100000
..............................................................................................................G-----------------------TT-CAATGTTAGGAATATGTG..........................................................................................................................................................................................................................................................................................................................................................2121.002000002
.........................................................................................................................................................................................................................................................................................................................................................................................GTTTAACA---------------------------ATTGGTC-GG---CTGCCAGTGG..................................................................2711.001100000
droWil2
TCAAACCCTTTTGCAGTATATTACCTGAAATTGCAAAGCCGGAGCGTAAGGTGCGTATGA----------A-------AA-GT-------ATTAAATA----TTGATAAAACGATTTGCATTGGAGTGTTTAGCTT-TC----------------C-TAGATTGCTC-TGCATA--TT-------------------------------------------T-TT-GACA-----------------TACATATAT--------G-TATAATATATATGT--------TTTTAA----------------------TATTTG--CCAATTAGTTA----------------AGTGTCTGTTTTTTGGTTTCTTTTC----------------ACCG------------------TCA-C-CA---CTGCCAGTGTTACCATCGCTTACGTTT-TATTCTCTTGCTTTCACTTGTCGGAAAA-A--AAACAAATGCGCCACGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................TACCTGAAATTGCAAAGCCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25134.0034034000
.........................TGAAATTGCAAAGCCGGAGCGTAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2617.00707000
..................TATTACCTGAAATTGCAAAGCCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2816.00615000
................TATATTACCTGAAATTGCAAAGCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00404000
.....................TACCTGAAATTGCAAAGCCGGAGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00404000
................TATATTACCTGAAATTGCAAAGCCGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.00404000
.....................TACCTGAAATTGCAAAGCCGGAGCGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00303000
..........................GAAATTGCAAAGCCGGAGCGTAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000
....................TTACCTGAAATTGCAAAGCCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000
......................ACCTGAAATTGCAAAGCCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000
...............................TGCAAAGCCGGAGCGTAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201010
.....................TACCTGAAATTGCAAAGCCGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201100
...............................TGCAAAGCCGGAGCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201010
.....................TACCTGAAATTGCAAAGCCGGAGCGTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000
...............GTATATTACCTGAAATTGCAAAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
........................CTGAAATTGCAAAGCCGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
...............GTATATTACCTGAAATTGCAAAGCCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00210010
.........................TGAAATTGCAAAGCCGGAGCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00201010
.........................TGAAATTGCAAAGCCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00202000
...........TGCAGTATATTACCTGAAATTGCAAAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
...........................AAATTGCAAAGCCGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................CTGAAATTGCAAAGCCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...................ATTACCTGAAATTGCAAAGCCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
................TATATTACCTGAAATTGCAAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................GAAATTGCAAAGCCGGAGCGTAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..................TATTACCTGAAATTGCAAAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......CTTTTGCAGTATATTACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TATTCTCTTGCTTTCACTTGTCGGA.......................2711.00100010
...............GTATATTACCTGAAATTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
............................AATTGCAAAGCCGGAGCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...............GTATATTACCTGAAATTGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
................TATATTACCTGAAATTGCAAAGCCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.........TTTGCAGTATATTACCTGAAATTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.....................................................................................................................................................................................................................................................................................................A----------------------TATTTG--CCAATTAGTTA----------------AGTGT.................................................................................................................................................2311.00100010
...............GTATATTACCTGAAATTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........TGCAGTATATTACCTGAAATTGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
............................AATTGCAAAGCCGGAGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............GTATATTACCTGAAATTGCAAAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...........................................................................................................................................................C-TAGATTGCTC-TGCATA--TT-------------------------------------------T-......................................................................................................................................................................................................................................................................................2011.00110000
.............................................................................................................................................................................................................................................................................................................................ATTTG--CCAATTAGTTA----------------AGTGTCT...............................................................................................................................................2311.00100010
.....................................................................................................................................................................................................................................................................................................A----------------------TATTTG--CCAATTAGTTA----------------AGT...................................................................................................................................................2111.00100010
..............AGTATATTACCTGAAATTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
TCAAGCCCTTCTGCAGTATACTGCCTGAAATTGCAAAGCCCGAACGCAAGGTGTGTATAA----------G-------T-----------ATTGATTA----AGAGTATATTTATTAG-----------CAATG--GTT----------------A---AATTAACG-TGGCA-------------------------------------------A--------A---------------------AGCTGTGAT--------------TTATAAA-GTGTGTTTTT-TTT--------------------------------------------TTT-TTTTGG--TTTGG------------TT-------TGTGC---------GTT-TTCG----TATCGTA-TTTGCTTTG-CT-----GTGCCAGTGTTGCCAGCGCACGCGTTATTTTT--TTTGCTTTCACTTGTCAG---T-C--GAA--T--GCGCCACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............GTATACTGCCTGAAATTGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................TTT-TTTTGG--TTTGG------------TT-------TGTGC---------.................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTCAG---T-C--GAA--T--GCGC....1911.001000000000000000000000000000000010000000000000000000000000000000
...........................AAATTGCAAAGCCCGAACGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
..............AGTATACTGCCTGAAATTGCAAAGCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................TTTGG------------TT-------TGTGC---------GTT-TTCG----TA...................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.................ATACTGCCTGAAATTGCAAAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TTCG----TATCGTA-TTTGCTTTG-...................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
........................CTGAAATTGCAAAGCCCGAACGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
...............................TGCAAAGCCCGAACGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.......................CCTGAAATTGCAAAGCCCGAACGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTCAG---T-C--GAA--T--GCGCCA..2111.001000000000000000000000000000000010000000000000000000000000000000
..............AGTATACTGCCTGAAATTGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................TGG--TTTGG------------TT-------TGTGC---------GTT-TTC..........................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................T-------TGTGC---------GTT-TTCG----TATCGTA-TT...........................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................TTTGG--TTTGG------------TT-------TGTGC---------GTT-TTCG----.....................................................................................................2411.001000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACTTGTCAG---T-C--GAA--T--GCG.....2111.001000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TTGG--TTTGG------------TT-------TGTGC---------GTT-TC...........................................................................................................2120.501000000000000000100000000000000000000000000000000000000000000000
droMoj3
TCAAGCCCTTCTGCAGTATACTGCCAGAAATTGCAAAGCCAGAGCGCAAGGTATGTAGAATTACCA---AAAG-----A-------CAGCTAT----A----TGTATATATTTCTTTA-----------C--GT--ACT----------------A---AATTACAG-T-------------------------------------GTC------AA--------A---------------------AAGTGTAATTTGTGATG--AACT----------------------------------------------------------CTTTTGGTTTT-TCGGTG--TTTAA------------TT-------TGCGT---------TT---ATA----TATCGTA-TTTGATTTG-CAGT---GCACCAGTGTTGCCAGCGCACGCGTTT-TTTAGGTTTGCTTTCACTTGTCGG---T-T--GAA--T--GCGCCACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................AATTGCAAAGCCAGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.........................AGAAATTGCAAAGCCAGAGCGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................ATG--AACT----------------------------------------------------------CTTTTGGTTTT-TCGG.............................................................................................................................................................2211.001100000
................................................................................................................................................................................................................................................................TTGTGATG--AACT----------------------------------------------------------CTTTTGGT.....................................................................................................................................................................2011.001000010
......................................................................................................................................................................G-T-------------------------------------GTC------AA--------A---------------------AAGTGTAATTTG..................................................................................................................................................................................................................................................2011.001000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGCGTTT-TTTAGGTTTGC.....................................2211.001100000
...AGCCCTTCTGCAGTATACT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..........................GAAATTGCAAAGCCAGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............................................................................................................................................................AATTACAG-T-------------------------------------GTC------AA--------A---------------------AAGT..........................................................................................................................................................................................................................................................1911.001100000
...................ACTGCCAGAAATTGCAAAGCCAGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTCGG---T-T--GAA--T--GCGC....1911.001000010
droGri2
TCAAGCCCTTTTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGAGTAAA-----------------------------------------------------------------------------CCC----------------A---GATA--------TATATATTGTTAAATATTTATATGAAAAGTT----GCT------AA--------A---------------------ACCTAAGATTTATGCTG--TGC-TTGTGAA-ATTTGAG---------------------------------------------------------------TTTAA------------TG-------TGTGC---------ATT-TCAA-----TGTCGTTTTTGGTACG-CTGG---GCGCCAGTGTTGCCAGCGCGCACGTTT--------TTGCTTTCACTTGCCAG---C-C--GAA--T--GCGCCACGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................AA------------TG-------TGTGC---------ATT-TCAA-----TG..................................................................................................1811.00110
...............GTATACTGCCGGAAATTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
droAna3
TCAAGCCTTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATTATAACTAA-----CTAATAAGTATTAAG---------------------------------TGAAG--TCC----------------A---GTAA--------CATTTTTTGTGG-------------------TAGTGTCTTT-AACGA-------------------------------------------------------AAAA-GTG-CATTTTGTTTGT-------------------------------TAATTTGCGGCGTT-TTTCTGT-TTTCT------------GC-------TGCCC---------CTT-ACCC------------CTCCCCCTG-AGACC--AGTCCAGTGTTGCCAGCGCACGG--------G--GTGGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................ATACTGCCGGAAATTGCAAAGCCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............GTATACTGCCGGAAATTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
...............GTATACTGCCGGAAATTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAAAAT-T--GGA--T--GCGC....1911.001010000
..............AGTATACTGCCGGAAATTGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................ATACTGCCGGAAATTGCAAAGCCCGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..............AGTATACTGCCGGAAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
...............GTATACTGCCGGAAATTGCAAAGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
.................ATACTGCCGGAAATTGCAAAGCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
............................AATTGCAAAGCCCGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
TCAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATTA---CCATCAAAACTGA-----ATAATAAGTATTAAG---------------------------------TAAAG--TCT----------------A---GAAA--------CATTTTTTGTGG-------------------TAGTGTCTTTGAAA---------------------------------------------------------AAAA-GTG-CAATTTGTTTGT-------------------------------TAATTTGCGGCGTT-TTTCTGT-TTT--------------CG-----TCTCCCT---------ATT-ACCC----------------CCTCC-CCCTCAGTGTTCAGTGTTGCCAGCGCACGG--------G--GTTGCTTTCACTTGTCAAAAAT-T--GGA--T--GCGCCACGSizeHit CountTotal NormTotal
No Reads
droKik1
TTAAACCCTTCTGCAGTATACTGCCGGAAATTGCAAAGCCCGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATAA-------------G-A-----------------------CT-TATTCTTTGGCTTAAGTAA----------------------------------------------------------------------GGAGTTCCCTGAGTCTGCGTT----------------GAGT--AA--ATAA-CCA-CATTCAATTAAATAATTATGCACTATTTTCTTGTGATTTGTAATAATTTTC---TAC------------------------------------GAGTTTCCCC---------------------------TACATGC-AT---CTGCCAGTGTTGCCAACACACGCGTTT-GGTG--GTGGCTTTCACTTGTAGAAAAA-TGTGAA--CA-TCGCCACGSizeHit CountTotal NormTotal
No Reads
droFic1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TTTGAAGTTAAATTTT-------------AAGG------------------CAATG--TGT----------------G---CGGAGTTT-TTCCACCT--------------------------------------------GTAT--A------------------------------------GTCAT--TTGTAAA-GTTTGATTTTGACAGA-------------------------------TAATTAGCGGCTTT-TCTCTG--TTTTA------------CG-------TGTGT---------TTTTTCGG-----AGGCAATCTCCCCCTA-CT-C---TGACCAGTGTTGCCAGCGCACGCGTTT-TATG--GTTGCTTTCACTTGTCAAAAAG-T--GAA--CA-TCGCCACGSizeHit CountTotal NormTotal
No Reads
droEle1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCAGAGCGCAAGGTGTGTATAA----------A-------TCTGTAATTTAATATG-C---------------------------------CAAAG-GTCT----------------T---GGCAGTT--TCCCAACA--------------------------------------------GTGC--T------------------------------------GTGTTTCTTGTAA---TTAAAATTTGGCTTA-------------------------------CAATTAGCGGCTTT-TCTCCGTGTTTAA------------CG-------TGTGT-----GTTTTTT-TCTG-----AGGTAATCTCCCCCCA-CT-T---TTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAC-T--GAT--CA-TCGCCACGSizeHit CountTotal NormTotal
No Reads
droRho1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAACCCGAGCGCAAGGTGTGTATAA----------A-------TCTTTATTTTAAT--AAG---------------------------------CAAAACGTCT----------------A---GGGA-TTT-TCCCAACA--------------------------------------------ATGC--A------------------------------------GTGTTTGGTGTAA---TTCGCATCTGGTGTT-------------------------------CAATTAGCGGCTTT-TCACCGT-TTTTA------------CG-------TGTAT-----AA--TTT-GCCGA----AGTTAATATACCCCTA-CT-T---CTGCCAGTGTTGCCAGCGCACGAGTTT-TAGT--GTTGCTTTCACTTGTCAAAAAC-T--GAA--CA-TCGCCACGSizeHit CountTotal NormTotal
No Reads
droBia1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATAA----------C-----AAGCGTTGATTCGAGGG--T---------------------------------TAAAGTT-CT----------------C---GAGAATGCATCGCAA--G--------------------------------------------TG-T-GGTG------------------------------------TCCCCAGAAAT-GTTTTAAGCAGTGTGG-------------------------------AAACTAGCGGTCTT-TCTGCGT-TT--T------------TG-------TGAGT---------TTTCCCTGAAGTGAGCTAATCTC--TCAA-CT-T---TGGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAA-G-C--GAA--CA-TCGCCACGSizeHit CountTotal NormTotal
No Reads
droTak1
TCAAACCCTTCTGCAGTATACTGCCGGAAATCGCAAAGCCCGAGCGCAAGGTGTGTATGA----------A-----AATCCTTAATTCAATAG--A---------------------------------CAAAATA-CC----------------C---TAGAGTCT-CCCCAA--A-------------------------------------------GTG-T-GGTG------------------------------------TTTCATGAAAT-GCACAAATTTCTCTAA-------------------------------CAATTAGCGGCCTT-CCTTGGT-T--TA------------CG-------TGTGT-----GT--TTT-CCTGA----GGGTTATCTCCCCCGA-CT-T---TGACCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAT-T--GAA--CA-TCGCCACGSizeHit CountTotal NormTotal
No Reads
droEug1
TCAAACCCTTCTGCAGTATACTGCCAGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------CCTTTTTTCTAATG--AT---------------------------------CAAAG--TCTA---------------T---GGTAATAG-G--CATTATT-------------------------------------------T-G--GGTG------------------------------------TTTCATTAAAA-GCTCAAATATGTCGAA-------------------------------TAATTTGCGGCTTT-TTTATG--TTGTA------------CG-------TGTAT---------CTT-ACCG-----AGCTAATCTCCCCCTA-C-CT---TTGCCAGTGTTGCCAGCGCACGCGTTT-CGTG--GTTGCTTTCACTTGTCAAAA-T-T--GAA--CA-TCGCCACGSizeHit CountTotal NormTotal
No Reads
dm3
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT---------------------------------CAAAG--TGT----------------A---GCTAGTTA-TCCCAA--TT-------------------------------------------G-CT-GCTG------------------------------------TACCATGTAAT-GTTCGAATTTTCCCAA-------------------------------CAATTTGCGGCTTT-TCTCGTC-TTATA------------CG-------TGTGT---------TTT-TCCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCCCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............AGTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2019.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................ATA------------CG-------TGTGT---------TTT-TCCG-----AGCG................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACCGGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACCGTTCTGCAGTATACTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GCAAAACCGGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATCGCAAAACCGGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000
.........................GGAAATCGCAAAACCGGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAACCGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AATCGCAAAACCGGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAACCGGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CAAAACCGGAGCGCAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........TGCAGTATACTGCCGGAAATCGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTTGCCAGCCCACGCGTT..................................................2111.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................C-TTATA------------CG-------TGTGT---------TTT-TCCG-----A...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............GTATACTGCCGGAAATCGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
TCAAACCGTTCTGCAGTATACTGCCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCGGAAATCGCAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................GGAAATCGCAAAACCGGAGCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATGTAAT---------------------------------CAAAG--TGT----------------A---GCTAG.................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............GTATACTGCCGGAAATCGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CGTTCTGCAGTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAGTATACTGCCGGAAATCGCAAAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGCTTTG-CTCT---CTGCCAGTGTTGCC..............................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACCGGAGCGCAAGGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................T-GCTG------------------------------------TACCATGTAAT-GTTCG..........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................TACTGCCGGAAATCGCAAAACCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................AATCGCAAAACCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................CTAGTTA-TCCCAA--TT-------------------------------------------G-CT-GCT................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAACCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AAACCGTTCTGCAGTATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCTGCAGTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTCTGCAGTATACTGCCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TCTGCAGTATACTGCCGGAAATCGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................TGCGGCTTT-TCTCGTC-TTATA------------........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTCTGCAGTATACTGCCGGAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CTGCCAGTGTTGCCAGCCCACG......................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TATACTGCCGGAAATCGCAAAACCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGCAGTATACTGCCGGAAATCGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................ACTGCCGGAAATCGCAAAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TGTGT---------TTT-TCCG-----AGCGAATCTCG.........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TAAT-GTTCGAATTTTCCCAA-------------------------------C...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TACTGCCGGAAATCGCAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TGT---------TTT-TCCG-----AGCGAATCTCG.........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................G-------TGTGT---------TTT-TCCG-----AGCGAAT.............................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAAATCGCAAAACCGGAGCGCAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
TCAAACCGTTCTGCAGTATACTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCT---CTGCCAGTGTTGCCAGCCCA........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............AGTATACTGCCGGAAATCGCAAAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................A-------------------------------CAATTTGCGGCTTT-TCTCGTC-.........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGCAGTATACTGCCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ATACTGCCGGAAATCGCAAAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AATTAGATGTAAT---------------------------------CAAAG--TGT----------------..........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................ATACTGCCGGAAATCGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTTCTGCAGTATACTGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT---------------------------------CAAAG--TGT----------------A---GCTAGTTA-TCCCAA--TT-------------------------------------------G-CT-GCTG------------------------------------TATCATGTAAT-GTTCGAATTTTCCCAA-------------------------------CAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGTGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............AGTATACTGCCGGAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00301200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCCAGCGCACGCGTTT-TG..............................................2212.00200001000000100000
...........TGCAGTATACTGCCGGAAATCGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001100000000
............................AATCGCAAAACCGGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020000000000000
.CAAACCGTTCTGCAGTATACTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..............AGTATACTGCCGGAAATCGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-CTCT---CTGCCAGTGTTGC...............................................................2111.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CTGCCAGTGTTGCCAGCGC.........................................................2111.00100000000000100000
.......GTTCTGCAGTATACTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
...........TGCAGTATACTGCCGGAAATCGCAAAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
...........................AAATCGCAAAACCGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
....ACCGTTCTGCAGTATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
droSec2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAAATAGATGTAAT---------------------------------CAAAG--TGT----------------A---GTTAGTTA-TCCCAA--TT-------------------------------------------G-CT-GCTT------------------------------------TACCGTGTAAT-GTTCGAATTTTCCCAA-------------------------------CAATTAGCGGCTTT-TCTCGTC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCGAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAAGT--GAA--CA-TCGCCACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................ATACTGCCGGAAATCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
..............AGTATACTGCCGGAAATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021010
................TATACTGCCGGAAATCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................AAATCGCAAAACCGGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.......GTTCTGCAGTATACTGCCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..........CTGCAGTATACTGCCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
......CGTTCTGCAGTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--GTTGCTTTCACTTGTCA.........................2111.0011000
.............................ATCGCAAAACCGGAGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............AGTATACTGCCGGAAATCGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..............AGTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGTAAGGTGTGTATTA----------A-------ATCGTAATTAGATGTAAT---------------------------------CACAG--CCC----------------A---GATTATTG-TCCCAA--TT-------------------------------------------T-GT-GCTG------------------------------------TACCATGTAAA-TATCTAATTTTCCCAA-------------------------------CAATTAGCGGCTTT-TCTCAGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCTTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAGTT--GAA--CA-TCGCCACGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............AGTATACTGCCGGAAATCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301000020000
..............AGTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201100000000
.................ATACTGCCGGAAATCGCAAAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCT---CTGCCAGTGTTGCCAGCG..........................................................2111.00101000000000
..................................AAAACCGGAGCGTAAGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
...............GTATACTGCCGGAAATCGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...............GTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............AGTATACTGCCGGAAATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..............AGTATACTGCCGGAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
...........................................................................................................................................................................................................................................................................................AATTTTCCCAA-------------------------------CAATTAGCGGCTC...................................................................................................................................................................2411.00100100000000
..AAACCGTTCTGCAGTATACTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATCTCGCTTTG-CTCT---CTGCCAG.....................................................................2611.00101000000000
..........................GAAATCGCAAAACCGGAGCGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.CAAACCGTTCTGCAGTATACTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CTGCCAGTGTTGCCAGCGCACGC.....................................................2511.00100000010000
droEre2
TCAAACCGTTCTGCAGTATACTGCCGGAAATCGCAAAACCGGAGCGCAAGGTGTGTATAA----------A-------ACCGTAATTAGATGTAAT---------------------------------CAAAG--GCC----------------A---GATTATTG-CCCCAA--TT-------------------------------------------T-GT-GCTG------------------------------------TGCCATGTAAA-GTTCGAATTTTCCCAA-------------------------------CAATTAGCGGCTTTTTCTCTGC-TTTTA------------CG-------TGTGT---------TTT-ACCG-----AGCTAATCTCGCCTTG-CTCT---CTGCCAGTGTTGCCAGCGCACGCGTTT-TGTG--GTTGCTTTCACTTGTCAAAAAATT--GAA--CA-TCGCCACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................AATCGCAAAACCGGAGCGCAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020001010
..........CTGCAGTATACTGCCGGAAATCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................GCAAAACCGGAGCGCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
...............GTATACTGCCGGAAATCGCAAAACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
....................CTGCCGGAAATCGCAAAACCGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..................................................GTGTGTATAA----------A-------ACCGTAATTAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000

Generated: 05/18/2015 at 12:30 AM