ID:

dps_1348

 Coordinate:

4_group1:699294-699425 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.2 -10.0 -9.9

Flybase annnotation

CDS [Dpse\GA25357-cds]; exon [dpse_GLEANR_16869:1]; exon [dpse_GLEANR_16869:2]; CDS [Dpse\GA25357-cds]; intron [Dpse\GA25357-in]

No Repeatable elements found

mature
  1. dps_1348  4_group1:699381-699402 +
  2. 4_group1:710031-710052 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------##################################################
ACATCGACTACGCGACCCCAGCTTGGACGAAGACGTAATGCGGAATCGGAGTGAGATCGTAGCCACTGGGTACCTCTTTAATCGAAAGGAAGAGCAAATACAAACGTAGAATAGTCTCACAAAGCAGCACGTTCTGGACTTATGGTTGGACTATGAAAACAATAAATTTCGAAATCTTTCAGTTCAAGTGGTTGGTGGGAAGAGGCTACCATCTCGGTCTCGAACGCTGTCC
****************************************************************************((((((((.(((..(((((..........(((((....))).))..........)))))...))).)))))))).........************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 V112
male body		 SRR902012
CNS imaginal disc
 M062
head
 M059
embryo
 GSM343916
embryo
 M022
male body
.......................................GCGGAAGCGGAGTGAAATAGT............................................................................................................................................................................ 21 3 4 3.75 15 0 10 5 0 0 0 0 0
........................................CGGAAGCGGAGTGAAATAGT............................................................................................................................................................................ 20 3 12 2.75 33 0 27 6 0 0 0 0 0
...................................TAATGCGGAATCGGAGTGAG................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................................GCGGAAGCGGAGTGAAAT............................................................................................................................................................................... 18 2 10 1.30 13 0 13 0 0 0 0 0 0
.........................................................................................................................................ACTTATGGTTGGACTATGAAAA......................................................................... 22 0 2 1.00 2 2 0 0 0 0 0 0 0
......................................................................................................................................................................................TTCAAGTGGTTGGTGGGAA............................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................TGAGATCGTAGCCACTGGGTT................................................................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................TTTAATCGAAAGGAAGAGCAA....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TCTTTCAGTTCAAGTGGTTGG..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................CAGTTCAAGTGGTTGGTGGG................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................GTGGTTGGTGGGAAGAGGC.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................CGTTCTGGACTTATGGTTGGA.................................................................................. 21 0 2 1.00 2 2 0 0 0 0 0 0 0
........................................CGGAATCGGAGTGAGATCGTAGC......................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0
..................................................................TGGGTACCTCTTTAATCGAA.................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................GGGAAGAGGCTACCATCTCGG............... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TGGTTGGTGGGAAGAGGCTAC....................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................AGAATAGTCACGCAAAGCAT......................................................................................................... 20 3 6 1.00 6 0 0 0 0 4 2 0 0
.............................................................................................................................................................................................GGTTGGTGGGAAGAGGCT......................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................ATAGTCTCACAAAGCAGCAC...................................................................................................... 20 0 3 0.67 2 2 0 0 0 0 0 0 0
.......................................GCGGAAGCGGAGTGAAATAG............................................................................................................................................................................. 20 3 9 0.56 5 0 5 0 0 0 0 0 0
.................................................................................................ATACAAACGTAGAATAGTCTC.................................................................................................................. 21 0 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................................................................................TGGTTGGACTATGAAAACAAT..................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0 0
..................................................................................................................................................TGGACTATGAAAACAATAAAT................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0
........................................CGGAAGCGGAGTGAAATAG............................................................................................................................................................................. 19 3 20 0.45 9 0 8 1 0 0 0 0 0
.........................................................................................................................................................................................AAGTGCGTGGTGGGAAGA............................. 18 2 3 0.33 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................TTTCAGATCAAGTGGTTAG..................................... 19 2 3 0.33 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................TACCATCTCGGTCTCGAACGC..... 21 0 3 0.33 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................ATGGGAAGAGGGTACCAT.................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................CCATCTCGGTCTCGAACGC..... 19 0 3 0.33 1 1 0 0 0 0 0 0 0
.................................................................................................................................CGTTTTGGACTTATGGATGG................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GGGAAGAGGGTACCATTTTGG............... 21 3 4 0.25 1 0 1 0 0 0 0 0 0
.......................................................................ACCCCTTTTATCGTAAGG............................................................................................................................................... 18 3 20 0.15 3 3 0 0 0 0 0 0 0
.................................................................................................................................CGTTCTGGACTTATGTTGGA................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0
........................................................................................................................GAAACAGCACGTTTTGGACT............................................................................................ 20 3 15 0.13 2 0 1 0 0 0 0 0 1
........................................................................................................................................................................................CAATGGGTTGGTGGGAAG.............................. 18 2 17 0.06 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................TTCAAGAGGATGGTGGGAAA.............................. 20 3 18 0.06 1 0 0 1 0 0 0 0 0
..............................................................................................AAAATACAAACGGAGAATA....................................................................................................................... 19 2 19 0.05 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TGGCTGGAAGAGGCTAGCA..................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0
......................................................................................................................ACAAAGCACCACGTTGCGG............................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TGTAGCTGATGCGCTGGGGTCGAACCTGCTTCTGCATTACGCCTTAGCCTCACTCTAGCATCGGTGACCCATGGAGAAATTAGCTTTCCTTCTCGTTTATGTTTGCATCTTATCAGAGTGTTTCGTCGTGCAAGACCTGAATACCAACCTGATACTTTTGTTATTTAAAGCTTTAGAAAGTCAAGTTCACCAACCACCCTTCTCCGATGGTAGAGCCAGAGCTTGCGACAGG
*************************************************************************((((((((.(((..(((((..........(((((....))).))..........)))))...))).)))))))).........**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 V112
male body		 M040
female body
 GSM444067
head
 M062
head
 M022
male body
.................................................................................................................CAGAGTGTTTCGTCGTGCAAG.................................................................................................. 21 0 3 41.00 123 37 50 19 10 6 1
..................................................................................................................AGAGTGTTTCGTCGTGCAAG.................................................................................................. 20 0 3 10.00 30 15 10 3 2 0 0
......................................................................................................................................ACCTGAATACCAACCTGATAC............................................................................. 21 0 2 10.00 20 16 3 0 0 1 0
.......................................................................................................................................CCTGAATACCAACCTGATAC............................................................................. 20 0 2 10.00 20 9 8 1 0 2 0
...................................................................................................................GAGTGTTTCGTCGTGCAAGA................................................................................................. 20 0 3 6.33 19 8 9 1 1 0 0
...............................................................................................................................GTGCAAGACCTGAATACCAAC.................................................................................... 21 0 2 6.00 12 7 3 1 0 1 0
.......................................................................................................................................................................AAGCTTTAGAAAGTCAAGTT............................................. 20 0 1 4.00 4 4 0 0 0 0 0
...................................................................................................................GAGTGTTTCGTCGTGCAAG.................................................................................................. 19 0 3 3.00 9 2 6 1 0 0 0
........................................................................GGAGAAATTAGCGTTCCTTC............................................................................................................................................ 20 1 3 2.67 8 0 6 1 1 0 0
................................................................................................................................................................................................................GGTAGAGCCAGAGCTTGCGAC... 21 0 3 2.33 7 3 4 0 0 0 0
..............................................................................................................................................................................AGAAAGTCAAGTTCACCAAC...................................... 20 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................GTCGTGCAAGACCTGAATACC....................................................................................... 21 0 2 2.00 4 1 3 0 0 0 0
..................................................................................................................AGAGTGTTTCGTCGTGCAAGA................................................................................................. 21 0 3 1.67 5 2 3 0 0 0 0
....................................................................................................................AGTGTTTCGTCGTGCAAGAC................................................................................................ 20 0 3 1.67 5 1 2 1 1 0 0
...........................................................................................................................................................................................................CCGATGGTAGAGCCAGAGCTT........ 21 0 2 1.50 3 1 1 1 0 0 0
.........................................................................................TTCTCGTTTATGTTTGCATCTTAT....................................................................................................................... 24 0 2 1.50 3 3 0 0 0 0 0
...............................................................................................................................................................................GAAAGTCAAGTTCACCAAC...................................... 19 0 3 1.33 4 4 0 0 0 0 0
................................................................................................................................................................................AAAGTCAAGTTCACCAACCAC................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TCAGAGTGTTTCGTCGTGCAAG.................................................................................................. 22 0 3 1.00 3 0 2 1 0 0 0
............................................................................................................................................................................TTAGAAAGTCAAGTTCACCA........................................ 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................AACCTGATACTTTTGTTATTT.................................................................. 21 0 2 1.00 2 2 0 0 0 0 0
.................................................................................................................................GCAAGACCTGAATACCAACCT.................................................................................. 21 0 2 1.00 2 2 0 0 0 0 0
.....................................................................................................................................................................................AAAGTTCACCAACCACCCTTC.............................. 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................GAATACCAACCTGATACTTT.......................................................................... 20 0 2 1.00 2 2 0 0 0 0 0
.......................................................................TGGAGAAATTAGCGTTCCTTC............................................................................................................................................ 21 1 3 1.00 3 0 2 1 0 0 0
...............................................................................................................................................................................................................TGGTAGAGCCAGAGCTTGCGAC... 22 0 3 1.00 3 2 1 0 0 0 0
.............................................................................................................................................................................TAGAAAGTCAAGTTCACCA........................................ 19 0 1 1.00 1 1 0 0 0 0 0
....................................................................................................................AGTGTTTCGTCGTGCAAG.................................................................................................. 18 0 3 1.00 3 3 0 0 0 0 0
.........................................................................................................................................................................................................CTCCGATGGTAGAGCCAGAGC.......... 21 0 2 1.00 2 0 0 1 0 0 1
................................................................................................................................TGCAAGACCTGAATACCAAC.................................................................................... 20 0 2 1.00 2 2 0 0 0 0 0
......................................................................ATGGAGAAATTAGCGTTCCTTC............................................................................................................................................ 22 1 3 0.67 2 0 1 1 0 0 0
.................................................................................................................................................................................................................GTAGAGCCAGAGCTTGCGAC... 20 0 3 0.67 2 0 2 0 0 0 0
.................................................................................................................AAGAGTGTTTCGTCGTGCAAGA................................................................................................. 22 1 3 0.67 2 0 2 0 0 0 0
..................................................................................................................AGAGTGTTTCGTCGTGCAATACCTGA............................................................................................ 26 1 3 0.67 2 2 0 0 0 0 0
..................................................................................................................AGAGTGTTTCGTCGTGCAAGAC................................................................................................ 22 0 3 0.67 2 0 2 0 0 0 0
........................................................................................................................................CTGAATACCAACCTGATAC............................................................................. 19 0 2 0.50 1 0 0 0 1 0 0
.............................................................................................................................TCGTGCAAGACCTGAATATC....................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0
......................................................................................TCCTTCTCGTTTATGTTTGC.............................................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................................................................ACCTGATACTTTTGTTATTTA................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................TCAAGACCTGAATACCAACCT.................................................................................. 21 1 2 0.50 1 1 0 0 0 0 0
............................................................................................................................GTCGTGCAGGACCTGAATACC....................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................ACCTGAATACCAACCTGATACT............................................................................ 22 0 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................CTGAATACCAACCTGATACT............................................................................ 20 0 2 0.50 1 0 1 0 0 0 0
......................................................................................................................................ACCTGAATACCAACCGGATAC............................................................................. 21 1 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................................................................................CAGATGGTAGAGCCAGAGCTT........ 21 1 2 0.50 1 0 0 0 0 1 0
......................................................................................................................................................................................................TTTCTCCGATGGTAGAGCCAGA............ 22 1 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................................................CTCCGATGGTAGAGCCAGAG........... 20 0 2 0.50 1 0 0 0 0 1 0
...........................................................................................................TGTTGTCAGAGTGTTTCGTCGTGCAAG.................................................................................................. 27 2 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................CGTGCAAGACCTGAATACCAAC.................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0
..............................................................................................................................CGTGCAAGACCTGAATACC....................................................................................... 19 0 2 0.50 1 0 0 1 0 0 0
..................................................................................................................................................ACCTGATACTTTTGTTATTT.................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
........................................................................................CTTCTCGTTTATGTTTGCATC........................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................GAATACCAACCTGATACTTTT......................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................GCAAGACCTGAATACCAA..................................................................................... 18 0 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................CCCTGAATACCAACCTGATAC............................................................................. 21 1 2 0.50 1 0 0 0 1 0 0
.......................................................................................TCTTCTCGTTTATGTTTGCAT............................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0
................................................................................................................TCAGAGTGTTTCGTCGTGC..................................................................................................... 19 0 3 0.33 1 0 0 0 1 0 0
.................................................................................................................CAGAGTGTTTCGTCGTGCAAA.................................................................................................. 21 1 3 0.33 1 0 0 0 1 0 0
...................................................................................................................GAGTGTTTCGTCGCGCAAGA................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0
...................................................................................................................GAGTCTTTCGTCGTGCAAGA................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0
...............................................................................................................ACCAGAGTGTTTCGTCGTGCAAGA................................................................................................. 24 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................................CAGAGTGTTTCGTCGTGCAA................................................................................................... 20 0 3 0.33 1 0 1 0 0 0 0
.................................................................................................................CAGAGTGTTTCGTCGTGCAAGACCTGA............................................................................................ 27 0 3 0.33 1 0 0 0 0 1 0
....................................................................................................................AGTGTTTCGTCGTGCAAGA................................................................................................. 19 0 3 0.33 1 0 1 0 0 0 0
............................................................................................................................................................................................................TGATGGTAGAGCCAGAGCTT........ 20 1 3 0.33 1 0 0 1 0 0 0
...................................................................................................................GAGTGTTTCGCCGTGCAAGA................................................................................................. 20 1 3 0.33 1 0 1 0 0 0 0
.................................................................................................................CAGAGTGTTTCGTCGTGCAAGA................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0
.........................................................................GAGAAATTAGCGTTCCTTC............................................................................................................................................ 19 1 3 0.33 1 0 0 1 0 0 0
................................................................................................................ACAGAGTGTTTCGTCGTGCAAG.................................................................................................. 22 1 3 0.33 1 1 0 0 0 0 0
...................................................................................................................GAGTGTTTCGTCGTTCAAGA................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0
..................................................................................................................AGAGTGCTTCGTCGTGCAAG.................................................................................................. 20 1 3 0.33 1 0 1 0 0 0 0
...............................................................................................................TTCAGAGTGTTTCGTCGTGCA.................................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
...............................................................................................................TTCAGAGTGTTTCGTCGTGCAAG.................................................................................................. 23 1 3 0.33 1 0 1 0 0 0 0
..................................................................................................................AGAGTGTTTCGTCGTGCA.................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TGAGTGTTTCGTCGTGCAAG.................................................................................................. 20 1 3 0.33 1 0 1 0 0 0 0
..................................................................................................................TGAGTGTTTCGTCGTGCAAGAC................................................................................................ 22 1 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................................................................................................GTAGAGCCAGAGCTTGCGACA.. 21 0 3 0.33 1 0 1 0 0 0 0
.....................................................................................................................GTGTTTCGTCGTGCAAGA................................................................................................. 18 0 3 0.33 1 0 0 1 0 0 0
..................................................CACTCTAGAATCGGTGACTCA................................................................................................................................................................. 21 2 3 0.33 1 0 0 0 0 0 1
..................................................CACTCTAGAATCGGTGACTC.................................................................................................................................................................. 20 2 4 0.25 1 0 0 0 0 0 1
............................................TATCCTCACTCTAGCAGC.......................................................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group1:699244-699475 + dps_1348 ACATCGACTACGCGACCCCAGCTTGGACGAAGACGTAATGCGGAATCGGAGTGAGATCGTAGCCACTGGGTACCTCTTTAATCGAAAGGAAGAGCAAATACAAACGTAGAATAGTCTCACAAAGCAGCACGTTCTGGACTTATGGTTGGACTATGAAAACAATAAATTTCGAAATCTTTCAGTTCAAGTGGTTGGTGGGAAGAGGCTACCATCTCGGT----CTCGAACGCTG-------TCC
droPer2 scaffold_1:695623-695854 + GCATCGACTACACGACACCAGCTTGGACGAAGAAGTAATGCGGAATCGGAGTGAGTTCGTAGCCACTGAGTACCTCATTAATCGCAAGGAAGAGCAAATACAAACGCTGAATAGTCTCACAAAGCAGCACGTTCTGGACTTATGGTTGGACTATGAAAACAATAAATTTCGAAAGCTTTCAGTTCAAGTGGTTGGTCGGAAGAGGCTACCATCTCGGT----CTCGAACGCTG-------TCC
droWil2 scf2_1100000004683:8192-8410 + -------------GATGTCAACTTAGACGATGAGGCATCTAGAAACTGGGATGAAATTGTTACCATGGAATATTTTTTCAACCATGTCGAAATGCAAATTCAAACACTTCGCGGGTTAACTAAGCAGCACGTAGTAAATTTCTTAAAAGAATATGAAAAAACTAATTTTAGAAAACTTTCCGTACAGGTGGTGGGAAAAAGCAAGGAACCATTACGGC----TACCAACGCAA-------TCT
droVir3 scaffold_13049:11118868-11119093 - ------ACTGGCCGATTACAGCCTGGACGATGAGGTAATGCGAAACTGGAGCGAAATAGTTAGCATGGACTATTTTTTCAATCGTACTGACATGCAAATACAAACTCTGAACAGCCTCACAAAGGATGATGTGGTCACATTTCTTTTAGACTACGACAAGTTCCATTTACGTAAACTCTCTGTTCAAGTGATTGGCGCTTCTACCGTGACCAGGCATT----CGACAACCCAA-------TCT
droMoj3 scaffold_6680:9709570-9709782 + -------------------AGCCTGGACGATGAGGTCATGCGCAACTGGAGCGAAATAGTCAGCATGGACTATTTCTTTAATCGCACCGACATGCAAATACAAACCTTAAATGGCCTGACAAAGAAAGATGTGCTCGACTTTCTAGTGAACTATGACAAGTACGATTTGCGTAAGCTCTCTGTACAAGTGATTGGTGCATCCTCCGTGTCCAGGGTGT----CGACGACTCAG-------TCC
droGri2 scaffold_15110:8211179-8211404 + ------ATTAGGCGATCACAGTTTGGATGATGAGGTCATGCGCAACTGGACCGAGATTGTTAGCATGGAATACTTTTTCAACCGTATTGACATGCAAATCCAAACACTGAGCACCCTCAGCAAGCAAGATGTCAGTGACTTCCTTTTGAATTATGACAAGAGCCATCTGCGCAAGCTATCTGTTCAAGTGATAGGCGCTCCCACAGTGGCGAGACAGT----CGCCAAACCAA-------TCC
droKik1 scf7180000302634:710052-710279 - ----CGGCTTCGAGACCACAGCCTGGACGAAGAGGTTGGCCGAAATTGGATTGAAATAGTAACCAGAGAGTATTTCTTTAATCGAGTGGAAATGCAAATACAAATGATTAACAGCTTGTCAAAGGAGCATCTCCTGGACTTCCTCCGCGACTACGAAAAGAATAACTTTCGGAAACTTTCAGTGCAGGTTGTGGGAAGAGGTAATCGAGTT----GGTGACAGCCAGGCATCA-------TCC
droFic1 scf7180000453929:100426-100638 + -------------GACACCAGCTTGGATGAAGAGGTCATGCGGAATTGGAGTGAAATTGTCACCATGGAGTATTTCTTCAATCGCATGGAGATGCAAATACAAACCCTGAACAGGTTAACAAAGGACGACGTTTTGAATTTCCTAAAGGACTACGACAAAAATAATTTAAGGAAACTTTCCGTGCAAGTTGTGGGAAATCAATTGTTGCCTTCAGATT----CAA------AA-------TCC
droEle1 scf7180000491193:2407971-2408197 - -----GGCTGGGTGACAATAGCTTAGATGAGGAAGTTATGCGAAATTGGAGTGAAATCGTTACCAAGGAATACTTCTTCAATCGCATGGAAATGGAAATTCAAACGCTGAACAATTTAACGAAGGAGGATGTTTTGAGTTTCCTGAATGACTATGATAAAAGCAATTTAAGAAAACTTTCTGTCCAAGTTGTGGGAAACGATAATTTATTACCAGATT----CAACAACCCAA-------GAT
droRho1 scf7180000778276:23009-23242 + -----GGCTGGGCGACACCAGCTTAGATGAGGAAGTAATGCGAAATTGGAGTGAAATCGTTACCAAGGAATACTTCTTCAATCGTTTGGAAATGCAAATTCAAATGCTAAACATTTTAACGAAGGATGATGTTTTGACTTTCTTGAATGACTATGATAAAAATAATTTAAGAAAACTTTCCGTGCAAGTTGTGGGAAAGCATATTTTACCAACAGATG----CAACAAGCCAAAATACCTTTC
droBia1 scf7180000302193:5084785-5085001 - -----GACTGGGAGACACGAGTTTGGATGAGGAAGTAATGCGGAATTGGAGTGAAATAGTCACCAAGGAATACTTCTTCAACCGTCTGGAAATGCAAATACAAACGCTGAACAACTTAACGAAGCAGGATGTTTTGAATTTCTTGTATGACTATGACCAGAATAATTTAAGAAAACTTTCGGTCCAAGTTGTGGGAAATCATACCTCATCCTCAGAAA----CAAC-----------------
droTak1 scf7180000415319:18786-19007 + -----GGCTGGGCGACACGAGTTTGGATGAGGAAGTTATGCGAAATTGGAGTGAAATCGTCACCAAGGAATATTTCTTTAATCGCGTCGAAATGCAAATACAAACGCTGAACAATTTGACGAAGGACGATGTTTTGAATTTTCTGAATGATTATGATAGGAATAATCTAAGAAAACTTTCTGTCCAAGTTGTGGGAAACCATACGTTGCCATCAGAAT----CCGC-----CA-------CCC
droEug1 scf7180000409711:5037674-5037900 - -----GACTTGGCGACACTAGCTTGGATGAGGAAGTCATGAGAAATTGGAGTGAAATCGTTACCAAAGAATATTTCTTTAATCGCATGGAAATGCAAATACAAACTCTTCAGAATTTAACAAAAGAAGATGTTCTGAATTTCCTAAATGATTATGATAAAAATAATCTAAGAAAACTCTCCGTGCAAGTTGTGGGAAAGCATACTCAGCCCTCGAATT----CAACAACCCAA-------GCT
droSim2 3l:20513689-20513913 + -------CTGGGCGACACAAGTTTGGATGAGGAAGTTTTGAGGAATTGGAGTGAAATTGTCACGAAAGAATACTTCTTTAATCGGATAGAAGCGCAAATACAAGTGCTGAGCAATTTAACGAAGGAGGACGTATTGAACTTCCTTAATGATAATGATAAAAACAATTTAAGAAAACTTTCTGTCCAAGTGGTGGGAAACCATAATCAAACATCAAATT----CAACAGCCCAA-------GCC
droSec2 scaffold_11:849640-849864 + -------CTGGGCGACACAAGTTTGGATGAGGAAGTTTTGAGGAATTGGAGTGAGATTGTCACGAAAGAATACTTCTTTAATCGGATAGAAGCGCAAATACAAGTGCTGAGCAATTTAACGAAGGAGGACGTACTGAACTTCCTTAATGATAATGATAAAAACAATTTAAGAAAACTTTCTGTACAAGTGGTGGGAAACCATAATCAAACATCAAATT----CAACAGCCCAA-------GCC
droYak3 3L:19583186-19583405 - -------CTGGGCGACACAAGTTTGGATGAGGAGGTCTTGAGAAACTGGAGTGAAATTGTCACCAGAGAATACTTTTTTAATCGAATAGAAACGCAGATACAAACGCTGGGTAATTTATCAAAGGAGGATGTTTTAAACTTCCTTTATGATTATGATAAAAATAATTTAAGAAAACTCTCTGTTCAAGTGGTTGGAAACCATACTAAAACTTCTGATT----CGACAGC------------CC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACATCGACTACGCGACCCCAGCTTGGACGAAGACGTAATGCGGAATCGGAGTGAGATCGTAGCCACTGGGTACCTCTTTAATCGAAAGGAAGAGCAAATACAAACGTAGAATAGTCTCACAAAGCAGCACGTTCTGGACTTATGGTTGGACTATGAAAACAATAAATTTCGAAATCTTTCAGTTCAAGTGGTTGGTGGGAAGAGGCTACCATCTCGGT----CTCGAACGCTG-------TCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................TAATGCGGAATCGGAGTGAG............................................................................................................................................................................................2012.0020000000020
.........................................................................................................................................ACTTATGGTTGGACTATGAAAA....................................................................................2221.0020000000020
......................................................................................................................................................................................TTCAAGTGGTTGGTGGGAA..........................................1911.0010000000010
...................................................TGAGATCGTAGCCACTGGGTT...........................................................................................................................................................................2111.0010000000010
............................................................................TTTAATCGAAAGGAAGAGCAA..................................................................................................................................................2111.0010000000010
..............................................................................................................................................................................TCTTTCAGTTCAAGTGGTTGG................................................2111.0010000000010
...................................................................................................................................................................................CAGTTCAAGTGGTTGGTGGG............................................2011.0010000001000
...........................................................................................................................................................................................GTGGTTGGTGGGAAGAGGC.....................................1911.0010000000010
.................................................................................................................................CGTTCTGGACTTATGGTTGGA.............................................................................................2121.0020000000020
........................................CGGAATCGGAGTGAGATCGTAGC....................................................................................................................................................................................2311.0010000000001
..................................................................TGGGTACCTCTTTAATCGAA.............................................................................................................................................................2011.0010000000010
....................................................................................................................................................................................................GGGAAGAGGCTACCATCTCGG..........................2111.0010100000000
............................................................................................................................................................................................TGGTTGGTGGGAAGAGGCTAC..................................2111.0010000000010
.............................................................................................................................................................................................GGTTGGTGGGAAGAGGCT....................................1811.0010000001000
..............................................................................................................ATAGTCTCACAAAGCAGCAC.................................................................................................................2030.6720000000020
.................................................................................................ATACAAACGTAGAATAGTCTC.............................................................................................................................2120.5010100000000
..............................................................................................................................................TGGTTGGACTATGAAAACAAT................................................................................2120.5010000000010
..................................................................................................................................................TGGACTATGAAAACAATAAAT............................................................................2120.5010000000010
..............................................................................................................................................................................................................TACCATCTCGGT----CTCGAACGC............2130.3310000000010
................................................................................................................................................................................................................CCATCTCGGT----CTCGAACGC............1930.3310000000010
droPer2
GCATCGACTACACGACACCAGCTTGGACGAAGAAGTAATGCGGAATCGGAGTGAGTTCGTAGCCACTGAGTACCTCATTAATCGCAAGGAAGAGCAAATACAAACGCTGAATAGTCTCACAAAGCAGCACGTTCTGGACTTATGGTTGGACTATGAAAACAATAAATTTCGAAAGCTTTCAGTTCAAGTGGTTGGTCGGAAGAGGCTACCATCTCGGT----CTCGAACGCTG-------TCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................GCACGTTCTGGACTTATGGTTGGA.............................................................................................2414.004400000
.................................................................................................................................CGTTCTGGACTTATGGTTGGA.............................................................................................2112.002000002
.....................................................................................................................................CTGGACTTATGGTTGGACTA..........................................................................................2020.501000001
....................................................................................................................................................................................AGTTCAAGTGGTTGGTCGG............................................1930.331000100
droWil2
-------------GATGTCAACTTAGACGATGAGGCATCTAGAAACTGGGATGAAATTGTTACCATGGAATATTTTTTCAACCATGTCGAAATGCAAATTCAAACACTTCGCGGGTTAACTAAGCAGCACGTAGTAAATTTCTTAAAAGAATATGAAAAAACTAATTTTAGAAAACTTTCCGTACAGGTGGTGGGAAAAAGCAAGGAACCATTACGGC----TACCAACGCAA-------TCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
------ACTGGCCGATTACAGCCTGGACGATGAGGTAATGCGAAACTGGAGCGAAATAGTTAGCATGGACTATTTTTTCAATCGTACTGACATGCAAATACAAACTCTGAACAGCCTCACAAAGGATGATGTGGTCACATTTCTTTTAGACTACGACAAGTTCCATTTACGTAAACTCTCTGTTCAAGTGATTGGCGCTTCTACCGTGACCAGGCATT----CGACAACCCAA-------TCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................TACAAACTCTGAACAGCCTC.............................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
droMoj3
-------------------AGCCTGGACGATGAGGTCATGCGCAACTGGAGCGAAATAGTCAGCATGGACTATTTCTTTAATCGCACCGACATGCAAATACAAACCTTAAATGGCCTGACAAAGAAAGATGTGCTCGACTTTCTAGTGAACTATGACAAGTACGATTTGCGTAAGCTCTCTGTACAAGTGATTGGTGCATCCTCCGTGTCCAGGGTGT----CGACGACTCAG-------TCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
------ATTAGGCGATCACAGTTTGGATGATGAGGTCATGCGCAACTGGACCGAGATTGTTAGCATGGAATACTTTTTCAACCGTATTGACATGCAAATCCAAACACTGAGCACCCTCAGCAAGCAAGATGTCAGTGACTTCCTTTTGAATTATGACAAGAGCCATCTGCGCAAGCTATCTGTTCAAGTGATAGGCGCTCCCACAGTGGCGAGACAGT----CGCCAAACCAA-------TCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droKik1
----CGGCTTCGAGACCACAGCCTGGACGAAGAGGTTGGCCGAAATTGGATTGAAATAGTAACCAGAGAGTATTTCTTTAATCGAGTGGAAATGCAAATACAAATGATTAACAGCTTGTCAAAGGAGCATCTCCTGGACTTCCTCCGCGACTACGAAAAGAATAACTTTCGGAAACTTTCAGTGCAGGTTGTGGGAAGAGGTAATCGAGTT----GGTGACAGCCAGGCATCA-------TCCSizeHit CountTotal NormTotal
No Reads
droFic1
-------------GACACCAGCTTGGATGAAGAGGTCATGCGGAATTGGAGTGAAATTGTCACCATGGAGTATTTCTTCAATCGCATGGAGATGCAAATACAAACCCTGAACAGGTTAACAAAGGACGACGTTTTGAATTTCCTAAAGGACTACGACAAAAATAATTTAAGGAAACTTTCCGTGCAAGTTGTGGGAAATCAATTGTTGCCTTCAGATT----CAA------AA-------TCCSizeHit CountTotal NormTotal
No Reads
droEle1
-----GGCTGGGTGACAATAGCTTAGATGAGGAAGTTATGCGAAATTGGAGTGAAATCGTTACCAAGGAATACTTCTTCAATCGCATGGAAATGGAAATTCAAACGCTGAACAATTTAACGAAGGAGGATGTTTTGAGTTTCCTGAATGACTATGATAAAAGCAATTTAAGAAAACTTTCTGTCCAAGTTGTGGGAAACGATAATTTATTACCAGATT----CAACAACCCAA-------GATSizeHit CountTotal NormTotal
No Reads
droRho1
-----GGCTGGGCGACACCAGCTTAGATGAGGAAGTAATGCGAAATTGGAGTGAAATCGTTACCAAGGAATACTTCTTCAATCGTTTGGAAATGCAAATTCAAATGCTAAACATTTTAACGAAGGATGATGTTTTGACTTTCTTGAATGACTATGATAAAAATAATTTAAGAAAACTTTCCGTGCAAGTTGTGGGAAAGCATATTTTACCAACAGATG----CAACAAGCCAAAATACCTTTCSizeHit CountTotal NormTotal
No Reads
droBia1
-----GACTGGGAGACACGAGTTTGGATGAGGAAGTAATGCGGAATTGGAGTGAAATAGTCACCAAGGAATACTTCTTCAACCGTCTGGAAATGCAAATACAAACGCTGAACAACTTAACGAAGCAGGATGTTTTGAATTTCTTGTATGACTATGACCAGAATAATTTAAGAAAACTTTCGGTCCAAGTTGTGGGAAATCATACCTCATCCTCAGAAA----CAAC-----------------SizeHit CountTotal NormTotal
No Reads
droTak1
-----GGCTGGGCGACACGAGTTTGGATGAGGAAGTTATGCGAAATTGGAGTGAAATCGTCACCAAGGAATATTTCTTTAATCGCGTCGAAATGCAAATACAAACGCTGAACAATTTGACGAAGGACGATGTTTTGAATTTTCTGAATGATTATGATAGGAATAATCTAAGAAAACTTTCTGTCCAAGTTGTGGGAAACCATACGTTGCCATCAGAAT----CCGC-----CA-------CCCSizeHit CountTotal NormTotal
No Reads
droEug1
-----GACTTGGCGACACTAGCTTGGATGAGGAAGTCATGAGAAATTGGAGTGAAATCGTTACCAAAGAATATTTCTTTAATCGCATGGAAATGCAAATACAAACTCTTCAGAATTTAACAAAAGAAGATGTTCTGAATTTCCTAAATGATTATGATAAAAATAATCTAAGAAAACTCTCCGTGCAAGTTGTGGGAAAGCATACTCAGCCCTCGAATT----CAACAACCCAA-------GCTSizeHit CountTotal NormTotal
No Reads
droSim2
-------CTGGGCGACACAAGTTTGGATGAGGAAGTTTTGAGGAATTGGAGTGAAATTGTCACGAAAGAATACTTCTTTAATCGGATAGAAGCGCAAATACAAGTGCTGAGCAATTTAACGAAGGAGGACGTATTGAACTTCCTTAATGATAATGATAAAAACAATTTAAGAAAACTTTCTGTCCAAGTGGTGGGAAACCATAATCAAACATCAAATT----CAACAGCCCAA-------GCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
-------CTGGGCGACACAAGTTTGGATGAGGAAGTTTTGAGGAATTGGAGTGAGATTGTCACGAAAGAATACTTCTTTAATCGGATAGAAGCGCAAATACAAGTGCTGAGCAATTTAACGAAGGAGGACGTACTGAACTTCCTTAATGATAATGATAAAAACAATTTAAGAAAACTTTCTGTACAAGTGGTGGGAAACCATAATCAAACATCAAATT----CAACAGCCCAA-------GCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................AGCAATTTAACGAAGGAGGACGT...............................................................................................................2311.0010100
droYak3
-------CTGGGCGACACAAGTTTGGATGAGGAGGTCTTGAGAAACTGGAGTGAAATTGTCACCAGAGAATACTTTTTTAATCGAATAGAAACGCAGATACAAACGCTGGGTAATTTATCAAAGGAGGATGTTTTAAACTTCCTTTATGATTATGATAAAAATAATTTAAGAAAACTCTCTGTTCAAGTGGTTGGAAACCATACTAAAACTTCTGATT----CGACAGC------------CCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/18/2015 at 12:31 AM