ID:

dps_1331

 Coordinate:

3:19753933-19754083 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.9 -14.6 -14.6

Flybase annnotation

exon [dpse_GLEANR_16473:1]; CDS [Dpse\GA13500-cds]; intron [Dpse\GA13500-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TATGCTACAATCATTCCCGGAGCGATCTTCATTAGTTGGCTAATTGGGCTGTAAGTATCATCGAGCTCCTCGCACCGATTTTGAGTCCCCCCCCCGGCTCGATTAGATGTTGTAAACGTATCGTATCCCTCTTCCATTTGTATAAACAAAACCTCCTGATTTCTCGTTATTTATATTTGTCATCGTGACGTTTGACATTTCGGGAACCGCCGACTCTGCTCCGCTTCCGTATTCTGTTTTCGCTGGTTCCC
**************************************************.........((((((((.........((((...))))........))))))))(((((((....((((......(((.........(((((....))))).......)))....))))....)))))))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 SRR902011
testis
 M059
embryo
 V112
male body		 GSM343916
embryo
..............................ATTAGTTGGCTAATTGGGCTGTAAG.................................................................................................................................................................................................... 25 0 1 64.00 64 64 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAAGTA.................................................................................................................................................................................................. 27 0 1 53.00 53 53 0 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAACCGC......................................... 25 0 1 42.00 42 41 0 1 0 0 0
................................TAGTTGGCTAATTGGGCTGTAAGTA.................................................................................................................................................................................................. 25 0 1 28.00 28 26 0 2 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAAGT................................................................................................................................................................................................... 26 0 1 23.00 23 23 0 0 0 0 0
.................................................TGTAAGTATCATCGAGCTCCTCGCAC................................................................................................................................................................................ 26 0 1 17.00 17 16 0 0 1 0 0
...............................TTAGTTGGCTAATTGGGCTGTAAGTA.................................................................................................................................................................................................. 26 0 1 17.00 17 16 0 1 0 0 0
............................................................................................................................................................TGATTTCTCGTTATTTATATTTG........................................................................ 23 0 1 13.00 13 13 0 0 0 0 0
.................................................TGTAAGTATCATCGAGCTCCTCGC.................................................................................................................................................................................. 24 0 1 13.00 13 13 0 0 0 0 0
..................................................GTAAGTATCATCGAGCTCCTCGCAC................................................................................................................................................................................ 25 0 1 12.00 12 12 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGGC.......................................................................................................................................................................................................... 22 0 1 11.00 11 11 0 0 0 0 0
...................................................................................................................................................................................TCATCGTGACGTTTGACATTTCGGGA.............................................. 26 0 1 8.00 8 8 0 0 0 0 0
............................TCATTAGTTGGCTAATTGGGCTGTAA..................................................................................................................................................................................................... 26 0 1 8.00 8 8 0 0 0 0 0
............................................................................................................................................................TGATTTCTCGTTATTTATATTTGTCA..................................................................... 26 0 1 8.00 8 8 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAAA.................................................................................................................................................................................................... 25 1 1 7.00 7 7 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTA...................................................................................................................................................................................................... 23 0 1 6.00 6 6 0 0 0 0 0
..................................................GTAAGTATCATCGAGCTCCTCGC.................................................................................................................................................................................. 23 0 1 6.00 6 2 4 0 0 0 0
.........................TCTTCATTAGTTGGCTAATTGGGCTG........................................................................................................................................................................................................ 26 0 1 6.00 6 4 0 2 0 0 0
................................................................................................................................................................................................TGACATTTCGGGAACCGCCGACT.................................... 23 0 1 6.00 6 6 0 0 0 0 0
................................................CTGTAAGTATCATCGAGCTCCTCGCAC................................................................................................................................................................................ 27 0 1 6.00 6 6 0 0 0 0 0
.....TACAATCATTCCCGGAGCGATCTTCAT........................................................................................................................................................................................................................... 27 0 1 6.00 6 6 0 0 0 0 0
........................................TAATTGGGCTGTAAGTATCATCGAGC......................................................................................................................................................................................... 26 0 1 6.00 6 6 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAA..................................................................................................................................................................................................... 24 0 1 6.00 6 6 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGT....................................................................................................................................................................................................... 22 0 1 6.00 6 6 0 0 0 0 0
TATGCTACAATCATTCCCGGAGCGATC................................................................................................................................................................................................................................ 27 0 1 5.00 5 4 1 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAACCGCA........................................ 26 1 1 5.00 5 5 0 0 0 0 0
......................................................................................................TTAGATGTTGTAAAC...................................................................................................................................... 15 0 1 5.00 5 5 0 0 0 0 0
............................TCATTAGTTGGCTAATTGGG........................................................................................................................................................................................................... 20 0 1 5.00 5 4 0 1 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAACCGCCGAC..................................... 29 0 1 5.00 5 5 0 0 0 0 0
............................TCATTAGTTGGCTAATTGGGCTGTA...................................................................................................................................................................................................... 25 0 1 5.00 5 5 0 0 0 0 0
...................................TTGGCTAATTGGGCTGTAAGTATCAT.............................................................................................................................................................................................. 26 0 1 5.00 5 5 0 0 0 0 0
............................................................................................................................................................TGATTTCTCGTTATTTATATTTGT....................................................................... 24 0 1 5.00 5 5 0 0 0 0 0
..................................................GTAAGTATCATCGAGCTCCTCGCA................................................................................................................................................................................. 24 0 1 5.00 5 4 1 0 0 0 0
................................................................................................................................................................................................................................TTCCGTATTCTGTTTTCGCTGGT.... 23 0 1 4.00 4 4 0 0 0 0 0
.......................................CTAATTGGGCTGTAAGTATCA............................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0
................................................................................................................TAAACGTATCGTATCCCTCTTCCATAA................................................................................................................ 27 2 1 3.00 3 3 0 0 0 0 0
TATGCTACAATCATTCCCGGAGCGA.................................................................................................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0 0 0
.................................................TGTAAGTATCATCGAGCTCCTCG................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0 0 0
...................................TTGGCTAATTGGGCTGTAAGTATC................................................................................................................................................................................................ 24 0 1 3.00 3 3 0 0 0 0 0
.......................................................TATCATCGAGCTCCTCGCACCGATTT.......................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGGCTG........................................................................................................................................................................................................ 24 0 1 3.00 3 3 0 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAACCG.......................................... 24 0 1 3.00 3 1 0 2 0 0 0
.........................................................................................................................................................................TTTATATTTGTCATCGTGACGTT........................................................... 23 0 1 3.00 3 3 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGG............................................................................................................................................................................................................ 20 0 1 3.00 3 2 1 0 0 0 0
............................TCATTAGTTGGCTAATTGGGCTGTAAG.................................................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0 0
.............................CATTAGTTGGCTAATTGGGCTGTAAG.................................................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0
................................................................................................................................................................................................TGACATTTCGGGAACCGCCGACTC................................... 24 0 1 3.00 3 3 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAAGA................................................................................................................................................................................................... 26 1 1 3.00 3 3 0 0 0 0 0
.................................................................................TGAGTCCCCCCCCCGGCTCGATTAGA................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGGCTGTA...................................................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0
..................................................GTAAGTATCATCGAGCTCCTCGCACA............................................................................................................................................................................... 26 1 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................TGATTTCTCGTTATTTATATTTGTCAT.................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAACC........................................... 23 0 1 2.00 2 2 0 0 0 0 0
...................................................................................................................................................................................TCATCGTGACGTTTGACATTTCGGG............................................... 25 0 1 2.00 2 2 0 0 0 0 0
.........................TCTTCATTAGTTGGCTAATTGGGC.......................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGGCTGTAAG.................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0
...............................TTAGTTGGCTAATTGGGCTGTA...................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................................................TGACATTTCGGGAACCGCCGACTCTGC................................ 27 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAACCGCC........................................ 26 0 1 2.00 2 2 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGGTGG.................................................................................................................................................................................................... 25 3 1 2.00 2 2 0 0 0 0 0
................................TAGTTGGCTAATTGGGCTGTAAGTAA................................................................................................................................................................................................. 26 1 1 2.00 2 2 0 0 0 0 0
................................................................................................................TAAACGTATCGTATCCCTCTTCC.................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................TTTATATTTGTCATCGTGACGTTTG......................................................... 25 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................TGTAAACGTATCGTATCCCTCTTCCACA................................................................................................................. 28 2 1 2.00 2 2 0 0 0 0 0
............................TCATTAGTTGGCTAATTGGGCTGTAAA.................................................................................................................................................................................................... 27 1 1 2.00 2 2 0 0 0 0 0
...............................TTAGTTGGCTAATTGGGCTGTAAGT................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAACCGCCG....................................... 27 0 1 2.00 2 2 0 0 0 0 0
...........................................TTGGGCTGTAAGTATCATCGAGC......................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGGCTGTAA..................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
...........................................................................................................TGTTGTAAACGTATCGTATCCCTCTTC..................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................TGTAAACGTATCGTATCCCTCTTCC.................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
.....................................................................................................................................................................................................................................TATTCTGTTTTCGCTGGTTCCC 22 0 1 2.00 2 2 0 0 0 0 0
................................................CTGTAAGTATCATCGAGCTCCTCGC.................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
................................TAGTTGGCTAATTGGGCTGTAAGTT.................................................................................................................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0
......................................................................................................................TATCGTATCCCTCTTCCATTTGTA............................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0
................................TAGTTGGCTAATTGGGCTGTAAGT................................................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................................................................................................TCGGGAACCGCCGACTCTGCTCCGCT.......................... 26 0 1 2.00 2 2 0 0 0 0 0
........................................................................................................................................................................................................................TGCTCCGCTTCCGTATTCTGTTTTCGC........ 27 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................TATAAACAAAACCTCCTGATTTCTCGT.................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0
........................................TAATTGGGCTGTAAGTATC................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................................................TTCCGTATTCTGTTTTCGCTGG..... 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................TAAACAAAACCTCCTGAT........................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................ATCGTATCCCTCTTCCATTT................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................................................................................TTTCTCGTTATTTATATTTGTCA..................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGGCTGT....................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................GTTTGACATTTCGGGAACC........................................... 19 0 1 1.00 1 0 1 0 0 0 0
...............................TTAGTTGGCTAATTGGGCTGTAA..................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.....................................................AGTATCATCGAGCTCCTCGC.................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................................................................................................ATCGTGACGTTTGACATTTCGGGA.............................................. 24 0 1 1.00 1 1 0 0 0 0 0
.................................................TGTAAGTATCATCGAGCTCCTCGCACC............................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGTATCATCGAGCTCCTCGT.................................................................................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.................................................GGTAAGTATCATCGAGCTCCTCGCACA............................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................................TTCCGTATTCTGTTTTCGCTG...... 21 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................ATTTCTCGTTATTTATATTTGT....................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................................TATTCTGTTTTCGCTGGTTCC. 21 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................TCATCGTGACGTTTAACATTTCGGG............................................... 25 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................AAACGTATCGTATCCCTCTTCCAT.................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................................................CATTTCGGGAACCGCCGACTCTG................................. 23 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................TAAACGTATCGTATCCCTCTTCCAT.................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..TGCTACAATCATTCCCGGAGCG................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0
...........................................................ATCGAGCTCCTCGCACCGATT........................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
.....................................................AGTATCATCGAGCTCCTCG................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
.....................................................................................................ATTAGATGTTGTAAACGTATC................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................................................TTTATATTTGTCATCGTGACGTTTGA........................................................ 26 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................TATTTATATTTGTCATCG.................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
............................TCATTAGTTGGCTAATTGG............................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................GTTTGACATTTCGGGAACCGCC........................................ 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................TGTAAACGTATCGTATCCCTCTTCCAT.................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
............................TCATTAGTTGGCTAATTGGGCTG........................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
............................................TGGGCTGTAAGTATCATCGAGCT........................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................................................TTGTCATCGTGACGTTTGACATTTCGG................................................ 27 0 1 1.00 1 1 0 0 0 0 0
....................................TGGCTAATTGGGCTGTAAGTATCATC............................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0
...........................................TTGGGCTGTAAGTATCATCGAG.......................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGTATCATCGAGCTCCTCGCAC................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0
..TGCTACAATCATTCCCGGAGC.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
................................TAGTTGGCTAATTGGGCTGTAAGTAAT................................................................................................................................................................................................ 27 2 1 1.00 1 1 0 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGGCT......................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
.......................................CTAATTGGGCTGTAAGTATC................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0
.............................CATTAGTTGGCTAATTGGGCTGTAA..................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................................TGGCTAATTGGGCTGTAAGTATCAT.............................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
..................................................................TCCTCGCACCGATTTTGAGTCCCCCCC.............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0
.................................................TGTAAGTATCATCGAGCTCCTCGCA................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0
...................................................TAAGTATCATCGAGCTCCTCGCA................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAAGAA.................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
...........................TTCATTCGTTGGCTAATTGGGCTGTAA..................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
............................................................................................................................................................TGATTTCTCGTTATTTATATTTGTC...................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..................................................GTAAGTATCATCGAGCTCCT..................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................TCGTGACGTTTGACATTTA.................................................. 19 1 1 1.00 1 0 1 0 0 0 0
...............CCCGGAGCGATCTTCATTAGTTGGC................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0
.................................................TGTAAGTATCATCGAGC......................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0
.............................CATTAGTTGGCTAATTGGGCTGTAAGGAG................................................................................................................................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0
.ATGCTACAATCATTCCCGGAGCGA.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................................................................TATTTGTCATCGTGACGTTTGAA....................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TCGTTATTTATATTTGTCATCGTGA............................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TTCTGTTTTCGCTGGTTCCC 20 0 1 1.00 1 0 1 0 0 0 0
...........................TTCATTAGTTGGCTAATTGGG........................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................CTTTGACATTTCGGGAACCGC......................................... 21 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................TCTCGTTATTTATATTTGTCATCGTGA............................................................... 27 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................TTTATTTGTCATCGTGACGTT........................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................CTTCCGTATTCTGTTTTCGC........ 20 0 1 1.00 1 0 1 0 0 0 0
..............................ATTAGTTGGCTGATTGGGCTGTAAGTA.................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAAGTG.................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
.....TACAATCATTCCCGGAGCGATATTCAT........................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0
............................TCATTAGTTGGCTAATTGGGCTGTAACTCT................................................................................................................................................................................................. 30 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................TTTATATTTGTCATCGTGACGTTT.......................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGAAC............................................ 22 0 1 1.00 1 1 0 0 0 0 0
..............................ATTAGTTGGCTAATTGGGCTGTAACT................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................................AACGTATCGTATCCCTCTTCCATT................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................................................TGACGTTTGACATTTCGGGA.............................................. 20 0 1 1.00 1 0 0 0 0 1 0
...................................................TAAGTATCATCGAGCTCCTCGCACC............................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
....................AGCGATCTTCATTAGTTGGC................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0
................................TAGTTGGCTAATTGGGCTGTAAG.................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...............................TTAGTTGGCTAATTGGGCTGTAAG.................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................ATCGTGACGTTTGACATTTC.................................................. 20 0 1 1.00 1 1 0 0 0 0 0
...............................TTAGTTGGCTAATTGGGCTGGTG..................................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0
......ACAATTCTTCTCGGAGCGATC................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0
........................................................ATCATCGTTCTCCTCGGACC............................................................................................................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0
...................................................................................................................................................................TCGTTAGTTATATTTGGC...................................................................... 18 2 12 0.08 1 0 0 0 0 0 1

Anti-sense strand reads

ATACGATGTTAGTAAGGGCCTCGCTAGAAGTAATCAACCGATTAACCCGACATTCATAGTAGCTCGAGGAGCGTGGCTAAAACTCAGGGGGGGGGCCGAGCTAATCTACAACATTTGCATAGCATAGGGAGAAGGTAAACATATTTGTTTTGGAGGACTAAAGAGCAATAAATATAAACAGTAGCACTGCAAACTGTAAAGCCCTTGGCGGCTGAGACGAGGCGAAGGCATAAGACAAAAGCGACCAAGGG
************************************************************************.........((((((((.........((((...))))........))))))))(((((((....((((......(((.........(((((....))))).......)))....))))....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902010
ovaries
 M040
female body
 SRR902011
testis
 GSM343916
embryo
 V112
male body		 GSM444067
head
 M059
embryo
............................................................................................................................................................................................................................GGCGAAGGCATAAGACAAAAGCGA....... 24 0 1 186.00 186 186 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCGAAGGCATAAGACAAAAGCGA....... 23 0 1 49.00 49 49 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGCGAAGGCATAAGACAAAAGCGA....... 25 0 1 36.00 36 35 0 1 0 0 0 0
................GGCCTCGCTAGAAGTAATCAACCG................................................................................................................................................................................................................... 24 0 1 24.00 24 24 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTGAGACGAGGCGAAGGCAT.................... 22 0 1 6.00 6 6 0 0 0 0 0 0
................GGCCTCGCTAGAAGTAATCAA...................................................................................................................................................................................................................... 21 0 1 5.00 5 5 0 0 0 0 0 0
................GGCCTCGCTAGAAGTAATCAAC..................................................................................................................................................................................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0
..............................................................................................................................................ATTTGTTTTGGAGGACTAAAGAGC..................................................................................... 24 0 1 4.00 4 4 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAGGCGAAGGCATAAGACAAAAGCGA....... 26 0 1 4.00 4 4 0 0 0 0 0 0
.....................................CCGATTAACCCGACATTCATAG................................................................................................................................................................................................ 22 0 1 3.00 3 3 0 0 0 0 0 0
................GGCCTCGCTAGAAGTAAT......................................................................................................................................................................................................................... 18 0 1 3.00 3 2 0 1 0 0 0 0
........................................................................................................................AGCATAGGGAGAAGGTAAACATATT.......................................................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0
...............................................................................................................................................GATGTTTTGGAGGACTAAAGAGC..................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................................................................................................GAGACGAGGCGAAGGCATAAGACA.............. 24 0 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................GGCGGCTGAGACGAGGCGAAGGCAT.................... 25 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................................................................................................GGCGAAGGCATAAGACAAAAGA......... 22 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................................................ATATTTGTTTTGGAGGACTAAAGAGC..................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0
ATACGATGTTAGTAAGGGCCTC..................................................................................................................................................................................................................................... 22 0 1 2.00 2 0 0 2 0 0 0 0
........................................................................................................................................................GAGGACTAAAGAGCAATAAAT.............................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................................................CATAGGGAGAAGGTAAACATATTT......................................................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CTAATCTACAACATTTGCATAGCAT.............................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGGCATAAGACAAAAGCGA....... 21 0 1 2.00 2 2 0 0 0 0 0 0
..................................CAACCGATTAACCCGACATTCATAGT............................................................................................................................................................................................... 26 0 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................................................GACGAGGCGAAGGCATAAGACAAA............ 24 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................AGCATAGGGAGAAGGTA.................................................................................................................. 17 0 1 1.00 1 1 0 0 0 0 0 0
......................GCTAGAAGTAATCAACCGATT................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
..................................CAACCGATTAACCCGACATTCATAG................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GACGAGGCGAAGGCATAAGACAAAAG.......... 26 0 1 1.00 1 0 0 0 0 1 0 0
...........................................................................................GGGGCCGAGCTAATCTACAACAT......................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
................................ATCAACCGATTAACCCGACATTCATAGTC.............................................................................................................................................................................................. 29 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................CTCGAGGAGCGTGGCTAAAA......................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
................GGCCTCGCTAGAAGTAATCAACCGA.................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................CAACCGATTAACCCGACATTCATA................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................CGAGGCGAAGGCATAAGACAAAAGCGA....... 27 0 1 1.00 1 1 0 0 0 0 0 0
.....................................CCGATTAACCCGACATTCATA................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1
............................................................................................................................................................................................................................GGCGAAGGCATAAGACAAAAGC......... 22 0 1 1.00 1 1 0 0 0 0 0 0
...........................................AACCCGACATTCATAGTAGCT........................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................................................GGCGAAGGCATAAGACAAA............ 19 0 1 1.00 1 1 0 0 0 0 0 0
................................................................CGAGGAGCGTGGCTAAAACTC...................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................CGAAGGCATAAGACAAAAGCGA....... 22 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGCTGAGACGAGGCGAAGGCAT.................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................TGTCCTGGAGGAGTAAAGAGCA.................................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0
.............................................................GCTCGAGGAGCGTGGCTAAA.......................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...............GGGCCTCGCTAGAAGTAAT......................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................GGGGGGGGCCGAGCTAATC................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................GGCTGAGACGAGGCGAAGGCATA................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................GGGGGGGGCCGAGCTAATCTA............................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................CGGCTGAGACGAGGCGAAGGCAT.................... 23 0 1 1.00 1 1 0 0 0 0 0 0
............TAAGGGCCTCGCTAGAAGTA........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................GCATAGGGAGAAGGTAAACAT............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................TGGAGCGTGGCTAAAACT....................................................................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0
...............GGGCCTCGCTAGAAGTAATCAACC.................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGGCATAAGACAAAAGCGA....... 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................AGGAGCGTGGCTAAAACTCAG.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................................CATAGGAGCTCGAGGAGCGT................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................................................................TTTGGAGGACTAAAGAGCAAT.................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................AATATAAACAGTAGCACTGCAAACT........................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................ATAGGGACCACGTAAACATAT........................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0
....................................................................................ATTGGGGGGGGCCGAGCTAA................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0
..................CGTCGCTTGAAGTAACCAAC..................................................................................................................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0
............................................................................................................................TAGGGACCACGTAAACATAT........................................................................................................... 20 3 11 0.09 1 0 0 0 0 1 0 0
............................................................................................................................TAGGGAGATGGTATACAT............................................................................................................. 18 2 11 0.09 1 0 0 0 1 0 0 0
...................................................................................ACAGGGGTGGGCCCGAGCT..................................................................................................................................................... 19 3 13 0.08 1 0 1 0 0 0 0 0
............................................................................................................................TAGGGAGTAGGTATACAT............................................................................................................. 18 2 15 0.07 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:19753883-19754133 + dps_1331 TATGCTACAATCATTCCCGGAGCGATCTTCATTAGTTGGCTAATTGGGCTGTAAGTATC--ATCG--AGCTCCTCGCACCGATTTTGAGTCCCCCCCCCGGCTCGA--TTAGATGTTGTAAACGTATCGTATCCCTCTTCCATT-TGTA--------------------TAAAC-----------------------------------------------------------AAAACCTCCTGATTTCTCGTTATTTATATTTGTCATCGTGACGTTTGACATTTC----------G-GG---AA-CCGCCGACTCTGCTCCGCTTCCGTAT-TCTGTTTTCGC-------TGG----T-----------------T-C-CC----------------
droPer2 scaffold_37:755303-755552 + dpe_1528 TATGCTACAATCATTCCCGGAGCGATCTTCATTAGTTGGCTAATTGGGCTGTAAGTATC--ATCG--AGCTCCTCGCACCGATTTTGAGTCCCC-CCCCGGCTTGA--TTAGATGTTGTAAACGTATCGTATCCCTCTTCCATT-TGTA--------------------TAAAC-----------------------------------------------------------AAAACCTCCTGATTTCTCGTTATTTATATTTGTCATCGTGACGTTTGACATTTC----------G-GG---AA-CCGCCGACTCTGCTCCGCTTCCGTAT-TCTGTTTTCGC-------TGG----T-----------------T-C-CC----------------
droWil2 scf2_1100000004822:1708594-1708657 + TATGCTACAATCATACCCGGAACAATCCTCATTAGTTGGCTAACTGGGCTGTAAGTATG--TTT----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13324:2674315-2674392 + TATGCAACGATCATTCCCGGAACGATCCTAATTAGTTGGCTGACTGGGCTGTAAGTATT--TATGCTCGA---TCGC-------------------------------AACGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:14127589-14127646 - TATGCAACGATCATTCCCGGAACGATTCTCATTAGTTGGCTGACTGGGCTGTAAGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:4802121-4802178 - TATGCAATAATCATTCCCGGAACGATCCTCATTAGTTGGCTGACGGGGCTGTAAGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:12751836-12752052 - TTTGCCACAGTCATTCCCGGAACGATCGTCCTTAGTTGGCTAACTGGTTTGTAAGTATCTTCAT----GC--------------------------------TCGAAATTCGATGTTGTGCGCTTGTTG--AAC---TTCCGTT-TGTAG----------------A----ACTT---------------------------------TCATCCCTTCAGAATCCTTGAAACT-------------------------CTTT--TAGTTCGTTACATG-GGC--TCC--AT-CCGC-GAGC---AA-ATGCCGGCTCAGTTCCGTTTCCGCTTCTGCTTG-------------------------------TCTGGCT-C-CC----------------
droBip1 scf7180000396372:232091-232323 - TTTGCCACAGTCATTCCCGGAACGATCGTCCTTAGTTGGCTAACTGGTCTGTAAGTATCTCCAT----GC--------------------------------TCGAATCTCGATGTTGTGCGCTTGTTC--AAC---TTCCGTT-TTTAG----------------A----ACTT---------------------------------TCATCCTCTCAGAAGCCTTAAAATT-------------------------CTTT--TAGTTCGTGACATC-GAC--TCC--AT-CCGC-G-AG---CATACGCCGGCTCTGTTCCGTTTCCGTTTCT-------------------------------GCTTTTCTTGCT-C-CCAGATTGTAAATAAATC
droKik1 scf7180000302682:825647-825886 + TATGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CCCGCAAGC--------------------------------TCGA--TTCGATGTTGTGCATAAGTTA--AA---CT----TT-TGTAGATATATATATATAATTATATATCCCGAGATTCCAT-TAATTGACTG---------ATC-------------------------GT-----------------------------GACATCGTGACATA-TATATTTCTATA-TAGC-G-GA---TA-TTGCCGGCTCTGTTCCGTTTCCGCTT--CCGCTTTTGTACATTCGTGA----A-----------------A-T-CC----------------
droFic1 scf7180000454044:837407-837640 + TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATCT-CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTT--AACTACT----TT-TGTAG----------------ACCTTATTCGAAA-CCCAT-TCTT---CTGATTTT--TGATC-------------------------TT-----------------------------AACATCGTGACA-------TTTC--CT-TCGC-G-AA---TA-TCGCCGGCTCTGTTCCGTTCCCGCATTTCCGTATAT-----------------ATT--CGCTTTGCTTGCTAT-CC-GAATGTACAT-----
droEle1 scf7180000491152:90315-90527 + TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTT--AACTACT----TA-TGTAG----------------ATATAACTTAAAA-CCCAT-TCTT---CTGATTTT--TAATC-------------------------TA-----------------------------AACATCGTGACATC-GACATTAC--TT-TCGC-G-AA---TA-TCGCCGGCTCTGTTCCGTTCCCGCTTTTTCGTATAT-----------------AAC-------------------C----------------
droRho1 scf7180000780106:235622-235851 - TTTGCCACACTTATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGCTT--AACTACT----TA-TGTAG----------------ATATAACTTGAAA-CCCAT-TCTT---CTGATTTT--TGATG-------------------------TG-----------------------------AACATCGTGACATT-GACATTTC--TT-TCGC-G-AA---TA-TCGCCGGCTCTGTTCCGTTTCCGCTTTTTCGTAAAT-----------------AAC--CGCTTTGCCTACTTCCCC----------------
droBia1 scf7180000302292:1316768-1316982 - TTTGCCACACTTATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--TAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTAT--AAC---------------G----------------ACATAACCCGAAC-CACAT-TCTT---CTGATTTT--TGATC-------------------------CA-----------------------------AACATCGTGACATC-GACATTTC--TTATCGCCG-GA---TA-TCGCCGGC-CTGTTCCGTTTCCGCTTTTCCGTA-AT-----------------ATC--CGCTTTGCTTGC-----C----------------
droTak1 scf7180000415991:540663-540879 + TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCCTGTAT--AACGAC------------G----------------ACATAACCCGA-A-CCCAT-TCTT---CTGATTTT--TGATC-------------------------TA-----------------------------AACATCGTGACATC-GACATTCT--TT-ACGC-G-GA---TA-TCGCCGGCTCTGTTCCGTTTCCGCTTTTCCGTATAT-----------------ATC--CGCTTTGCTTGC-----C----------------
droEug1 scf7180000409663:282985-283224 - TTTGCCACAGTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--ACC----GC--------------------------------TCGA--TTCGATGTTGTTCGCTTGTTT--AACTACT----TAATGTAG----------------ACTTAACCCGTAA-CCCATTTCTT---CTGATTTTGATGAAC-------------------------TA-----------------------------AACATCGTGACATA-GACATTTC--TT-TCGC-G-GA---CT-TCGCCGGCTCTGTTCCGTTTCCGCTTTTCCGTATTTAT-------------ATATCTAAGCTTTGCTTGCTAACCA----------------
dm3 chr2R:15026805-15027028 + TTAGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTTTTACTACT----TT-CGTAG----------------ACATAACCCGAAA-CCCAT-TCTT---CTGATTTA--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTCTCTT-TCGC-G-GCTAATT-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATAT---------------TAATC--CGC-------------------------------
droSim2 2r:15677218-15677441 + dsi_29077 TTAGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-TACTACT----TT-CGTAG----------------ACATAACCCGAAA-CCCAT-TCTT---CTGATTTT--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GCTA-AT-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATAT---------------TTATC--CGCTTTG---------------------------
droSec2 scaffold_1:12539708-12539931 + TTAGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-TACTACT----TT-CGTAG----------------ACATAACCCGAAA-CCCAT-TCTT---CTGATTTA--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GCTA-AT-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATAT---------------TTATC--CGCTTTG---------------------------
droYak3 2R:14153260-14153499 - TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-TACTACT----TT-TGTAG----------------ACTTAACCCGAAA-CCCAT-TCTT---CTGATTTA--CAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GC---TATTTGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATATA--------ATATATAAATC--CGCTTTGCTTGCTAC-CC----------------
droEre2 scaffold_4845:9226519-9226738 + TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--TTT----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-AACTACT----TT-TGTAG----------------ACTTAACCCGAAA-CCCAT-TCTT---CTGATTTA--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GC---TA-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATATAC-------ATA----TATC-------------------C----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TATGCTACAATCATTCCCGGAGCGATCTTCATTAGTTGGCTAATTGGGCTGTAAGTATC--ATCG--AGCTCCTCGCACCGATTTTGAGTCCCCCCCCCGGCTCGA--TTAGATGTTGTAAACGTATCGTATCCCTCTTCCATT-TGTA--------------------TAAAC-----------------------------------------------------------AAAACCTCCTGATTTCTCGTTATTTATATTTGTCATCGTGACGTTTGACATTTC----------G-GG---AA-CCGCCGACTCTGCTCCGCTTCCGTAT-TCTGTTTTCGC-------TGG----T-----------------T-C-CC----------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................ATTAGTTGGCTAATTGGGCTGTAAG........................................................................................................................................................................................................................................................................................................................................................25164.006400000006400
..............................ATTAGTTGGCTAATTGGGCTGTAAGTA......................................................................................................................................................................................................................................................................................................................................................27153.005300000005300
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-CCGC........................................................................................25142.004200000004110
................................TAGTTGGCTAATTGGGCTGTAAGTA......................................................................................................................................................................................................................................................................................................................................................25128.002800000002620
..............................ATTAGTTGGCTAATTGGGCTGTAAGT.......................................................................................................................................................................................................................................................................................................................................................26123.002300000002300
.................................................TGTAAGTATC--ATCG--AGCTCCTCGCAC................................................................................................................................................................................................................................................................................................................................26117.001700100001600
...............................TTAGTTGGCTAATTGGGCTGTAAGTA......................................................................................................................................................................................................................................................................................................................................................26117.001700000001610
..................................................................................................................................................................................................................................................TGATTTCTCGTTATTTATATTTG......................................................................................................................................23113.001300000001300
.................................................TGTAAGTATC--ATCG--AGCTCCTCGC..................................................................................................................................................................................................................................................................................................................................24113.001300000001300
..................................................GTAAGTATC--ATCG--AGCTCCTCGCAC................................................................................................................................................................................................................................................................................................................................25112.001200000001200
...........................TTCATTAGTTGGCTAATTGGGC..............................................................................................................................................................................................................................................................................................................................................................22111.001100000001100
.........................................................................................................................................................................................................................................................................TCATCGTGACGTTTGACATTTC----------G-GG---A..............................................................................................2618.0080000000800
............................TCATTAGTTGGCTAATTGGGCTGTAA.........................................................................................................................................................................................................................................................................................................................................................2618.0080000000800
..................................................................................................................................................................................................................................................TGATTTCTCGTTATTTATATTTGTCA...................................................................................................................................2618.0080000000800
..............................ATTAGTTGGCTAATTGGGCTGTAAA........................................................................................................................................................................................................................................................................................................................................................2517.0070000000700
..............................ATTAGTTGGCTAATTGGGCTGTA..........................................................................................................................................................................................................................................................................................................................................................2316.0060000000600
..................................................GTAAGTATC--ATCG--AGCTCCTCGC..................................................................................................................................................................................................................................................................................................................................2316.0060400000200
.........................TCTTCATTAGTTGGCTAATTGGGCTG............................................................................................................................................................................................................................................................................................................................................................2616.0060000000420
......................................................................................................................................................................................................................................................................................TGACATTTC----------G-GG---AA-CCGCCGACT...................................................................................2316.0060000000600
................................................CTGTAAGTATC--ATCG--AGCTCCTCGCAC................................................................................................................................................................................................................................................................................................................................2716.0060000000600
.....TACAATCATTCCCGGAGCGATCTTCAT...............................................................................................................................................................................................................................................................................................................................................................................2716.0060000000600
........................................TAATTGGGCTGTAAGTATC--ATCG--AGC.........................................................................................................................................................................................................................................................................................................................................2616.0060000000600
..............................ATTAGTTGGCTAATTGGGCTGTAA.........................................................................................................................................................................................................................................................................................................................................................2416.0060000000600
..............................ATTAGTTGGCTAATTGGGCTGT...........................................................................................................................................................................................................................................................................................................................................................2216.0060000000600
TATGCTACAATCATTCCCGGAGCGATC....................................................................................................................................................................................................................................................................................................................................................................................2715.0050100000400
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-CCGCA.......................................................................................2615.0050000000500
............................................................................................................TTAGATGTTGTAAAC....................................................................................................................................................................................................................................................................................1515.0050000000500
............................TCATTAGTTGGCTAATTGGG...............................................................................................................................................................................................................................................................................................................................................................2015.0050000000410
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-CCGCCGAC....................................................................................2915.0050000000500
............................TCATTAGTTGGCTAATTGGGCTGTA..........................................................................................................................................................................................................................................................................................................................................................2515.0050000000500
...................................TTGGCTAATTGGGCTGTAAGTATC--AT................................................................................................................................................................................................................................................................................................................................................2615.0050000000500
..................................................................................................................................................................................................................................................TGATTTCTCGTTATTTATATTTGT.....................................................................................................................................2415.0050000000500
..................................................GTAAGTATC--ATCG--AGCTCCTCGCA.................................................................................................................................................................................................................................................................................................................................2415.0050100000400
.....................................................................................................................................................................................................................................................................................................................................TTCCGTAT-TCTGTTTTCGC-------TGG----T-----------------......................2314.0040000000400
.......................................CTAATTGGGCTGTAAGTATC--A.................................................................................................................................................................................................................................................................................................................................................2113.0030000000300
......................................................................................................................TAAACGTATCGTATCCCTCTTCCATA-A.............................................................................................................................................................................................................................................................2713.0030000000300
TATGCTACAATCATTCCCGGAGCGA......................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000300
.................................................TGTAAGTATC--ATCG--AGCTCCTCG...................................................................................................................................................................................................................................................................................................................................2313.0030000000300
...................................TTGGCTAATTGGGCTGTAAGTATC--..................................................................................................................................................................................................................................................................................................................................................2413.0030000000300
.......................................................TATC--ATCG--AGCTCCTCGCACCGATTT..........................................................................................................................................................................................................................................................................................................................2613.0030000000300
...........................TTCATTAGTTGGCTAATTGGGCTG............................................................................................................................................................................................................................................................................................................................................................2413.0030000000300
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-CCG.........................................................................................2413.0030000000120
...............................................................................................................................................................................................................................................................TTTATATTTGTCATCGTGACGTT.........................................................................................................................2313.0030000000300
...........................TTCATTAGTTGGCTAATTGG................................................................................................................................................................................................................................................................................................................................................................2013.0030100000200
............................TCATTAGTTGGCTAATTGGGCTGTAAG........................................................................................................................................................................................................................................................................................................................................................2713.0030000000300
.............................CATTAGTTGGCTAATTGGGCTGTAAG........................................................................................................................................................................................................................................................................................................................................................2613.0030000000300
......................................................................................................................................................................................................................................................................................TGACATTTC----------G-GG---AA-CCGCCGACTC..................................................................................2413.0030000000300
..............................ATTAGTTGGCTAATTGGGCTGTAAGA.......................................................................................................................................................................................................................................................................................................................................................2613.0030000000300
.....................................................................................TGAGTCCCCCCCCCGGCTCGA--TTAGA..............................................................................................................................................................................................................................................................................................2612.0020000000200
...........................TTCATTAGTTGGCTAATTGGGCTGTA..........................................................................................................................................................................................................................................................................................................................................................2612.0020000000200
..................................................GTAAGTATC--ATCG--AGCTCCTCGCACA...............................................................................................................................................................................................................................................................................................................................2612.0020000000200
..................................................................................................................................................................................................................................................TGATTTCTCGTTATTTATATTTGTCAT..................................................................................................................................2712.0020000000200
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-CC..........................................................................................2312.0020000000200
.........................................................................................................................................................................................................................................................................TCATCGTGACGTTTGACATTTC----------G-GG---...............................................................................................2512.0020000000200
.........................TCTTCATTAGTTGGCTAATTGGGC..............................................................................................................................................................................................................................................................................................................................................................2412.0020000000200
...........................TTCATTAGTTGGCTAATTGGGCTGTAAG........................................................................................................................................................................................................................................................................................................................................................2812.0020000000200
...............................TTAGTTGGCTAATTGGGCTGTA..........................................................................................................................................................................................................................................................................................................................................................2212.0020000000200
......................................................................................................................................................................................................................................................................................TGACATTTC----------G-GG---AA-CCGCCGACTCTGC...............................................................................2712.0020000000200
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-CCGCC.......................................................................................2612.0020000000200
................................TAGTTGGCTAATTGGGCTGTAAGTAA.....................................................................................................................................................................................................................................................................................................................................................2612.0020000000200
......................................................................................................................TAAACGTATCGTATCCCTCTTCC..................................................................................................................................................................................................................................................................2312.0020000000200
...............................................................................................................................................................................................................................................................TTTATATTTGTCATCGTGACGTTTG.......................................................................................................................2512.0020000000200
....................................................................................................................TGTAAACGTATCGTATCCCTCTTCCACA-..............................................................................................................................................................................................................................................................2812.0020000000200
............................TCATTAGTTGGCTAATTGGGCTGTAAA........................................................................................................................................................................................................................................................................................................................................................2712.0020000000200
...............................TTAGTTGGCTAATTGGGCTGTAAGT.......................................................................................................................................................................................................................................................................................................................................................2512.0020000000200
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-CCGCCG......................................................................................2712.0020000000200
...........................................TTGGGCTGTAAGTATC--ATCG--AGC.........................................................................................................................................................................................................................................................................................................................................2312.0020000000200
...........................TTCATTAGTTGGCTAATTGGGCTGTAA.........................................................................................................................................................................................................................................................................................................................................................2712.0020000000200
.................................................................................................................TGTTGTAAACGTATCGTATCCCTCTTC...................................................................................................................................................................................................................................................................2712.0020000000200
....................................................................................................................TGTAAACGTATCGTATCCCTCTTCC..................................................................................................................................................................................................................................................................2512.0020000000200
..........................................................................................................................................................................................................................................................................................................................................TAT-TCTGTTTTCGC-------TGG----T-----------------T-C-CC----------------2212.0020000000200
................................................CTGTAAGTATC--ATCG--AGCTCCTCGC..................................................................................................................................................................................................................................................................................................................................2512.0020000000200
................................TAGTTGGCTAATTGGGCTGTAAGTT......................................................................................................................................................................................................................................................................................................................................................2512.0020000000200
............................................................................................................................TATCGTATCCCTCTTCCATT-TGTA--------------------......................................................................................................................................................................................................................................2412.0020000000200
................................TAGTTGGCTAATTGGGCTGTAAGT.......................................................................................................................................................................................................................................................................................................................................................2412.0020000000200
.............................................................................................................................................................................................................................................................................................TC----------G-GG---AA-CCGCCGACTCTGCTCCGCT.........................................................................2612.0020000000200
.............................................................................................................................................................................................................................................................................................................................TGCTCCGCTTCCGTAT-TCTGTTTTCGC-------...............................................2712.0020000000200
...................................................................................................................................................TA--------------------TAAAC-----------------------------------------------------------AAAACCTCCTGATTTCTCGT..................................................................................................................................................2712.0020000000200
........................................TAATTGGGCTGTAAGTATC--..................................................................................................................................................................................................................................................................................................................................................1911.0010000000010
.....................................................................................................................................................................................................................................................................................................................................TTCCGTAT-TCTGTTTTCGC-------TGG----........................................2211.0010000000100
.........................................................................................................................................................................TAAAC-----------------------------------------------------------AAAACCTCCTGAT.........................................................................................................................................................1811.0010000000100
.............................................................................................................................ATCGTATCCCTCTTCCATT-T.............................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................TTTCTCGTTATTTATATTTGTCA...................................................................................................................................2311.0010000000100
...........................TTCATTAGTTGGCTAATTGGGCTGT...........................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
...................................................................................................................................................................................................................................................................................GTTTGACATTTC----------G-GG---AA-CC..........................................................................................1911.0010100000000
...............................TTAGTTGGCTAATTGGGCTGTAA.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000100
.....................................................AGTATC--ATCG--AGCTCCTCGC..................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................ATCGTGACGTTTGACATTTC----------G-GG---A..............................................................................................2411.0010000000100
.................................................TGTAAGTATC--ATCG--AGCTCCTCGCACC...............................................................................................................................................................................................................................................................................................................................2711.0010000000100
..................................................GTAAGTATC--ATCG--AGCTCCTCGT..................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................................................................................................................................................................................................................................................................................................................................TTCCGTAT-TCTGTTTTCGC-------TG.............................................2111.0010100000000
....................................................................................................................................................................................................................................................ATTTCTCGTTATTTATATTTGT.....................................................................................................................................2211.0010000000100
..........................................................................................................................................................................................................................................................................................................................................TAT-TCTGTTTTCGC-------TGG----T-----------------T-C-C.................2111.0010000000100
.......................................................................................................................AAACGTATCGTATCCCTCTTCCAT................................................................................................................................................................................................................................................................2411.0010000000100
.........................................................................................................................................................................................................................................................................................CATTTC----------G-GG---AA-CCGCCGACTCTG................................................................................2311.0010000000100
......................................................................................................................TAAACGTATCGTATCCCTCTTCCAT................................................................................................................................................................................................................................................................2511.0010000000100
..TGCTACAATCATTCCCGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.............................................................ATCG--AGCTCCTCGCACCGATT...........................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................AGTATC--ATCG--AGCTCCTCG...................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.........................................................................................................A--TTAGATGTTGTAAACGTATC...............................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................TTTATATTTGTCATCGTGACGTTTGA......................................................................................................................2611.0010000000100
.............................................................................................................................................................................................................................................................TATTTATATTTGTCATCG................................................................................................................................1811.0010000000100
............................TCATTAGTTGGCTAATTGG................................................................................................................................................................................................................................................................................................................................................................1911.0010000000100
...................................................................................................................................................................................................................................................................................GTTTGACATTTC----------G-GG---AA-CCGCC.......................................................................................2211.0010000000100
....................................................................................................................TGTAAACGTATCGTATCCCTCTTCCAT................................................................................................................................................................................................................................................................2711.0010000000100
............................TCATTAGTTGGCTAATTGGGCTG............................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
............................................TGGGCTGTAAGTATC--ATCG--AGCT........................................................................................................................................................................................................................................................................................................................................2311.0010000000100
......................................................................................................................................................................................................................................................................TTGTCATCGTGACGTTTGACATTTC----------G-G...................................................................................................2711.0010000000100
....................................TGGCTAATTGGGCTGTAAGTATC--ATC...............................................................................................................................................................................................................................................................................................................................................2611.0010000000100
...........................................TTGGGCTGTAAGTATC--ATCG--AG..........................................................................................................................................................................................................................................................................................................................................2211.0010000000100
...................................................TAAGTATC--ATCG--AGCTCCTCGCAC................................................................................................................................................................................................................................................................................................................................2411.0010000000100
..TGCTACAATCATTCCCGGAGC........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................TAGTTGGCTAATTGGGCTGTAAGTAAT--..................................................................................................................................................................................................................................................................................................................................................2711.0010000000100
...........................TTCATTAGTTGGCTAATTGGGCT.............................................................................................................................................................................................................................................................................................................................................................2311.0010000000100
.......................................CTAATTGGGCTGTAAGTATC--..................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................CATTAGTTGGCTAATTGGGCTGTAA.........................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
....................................TGGCTAATTGGGCTGTAAGTATC--AT................................................................................................................................................................................................................................................................................................................................................2511.0010000000100
......................................................................TCCTCGCACCGATTTTGAGTCCCCCCC..............................................................................................................................................................................................................................................................................................................2711.0010000000100
.................................................TGTAAGTATC--ATCG--AGCTCCTCGCA.................................................................................................................................................................................................................................................................................................................................2511.0010000000100
...................................................TAAGTATC--ATCG--AGCTCCTCGCA.................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................TGATTTCTCGTTATTTATATTTGTC....................................................................................................................................2511.0010000000100
..................................................GTAAGTATC--ATCG--AGCTCCT.....................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................TCGTGACGTTTGACATTTA----------......................................................................................................1911.0010100000000
...............CCCGGAGCGATCTTCATTAGTTGGC.......................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.................................................TGTAAGTATC--ATCG--AGC.........................................................................................................................................................................................................................................................................................................................................1711.0010000000100
.ATGCTACAATCATTCCCGGAGCGA......................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...................................................................................................................................................................................................................................................................TATTTGTCATCGTGACGTTTGAA.....................................................................................................................2311.0010000000100
.........................................................................................................................................................................................................................................................TCGTTATTTATATTTGTCATCGTGA.............................................................................................................................2511.0010000000100
............................................................................................................................................................................................................................................................................................................................................T-TCTGTTTTCGC-------TGG----T-----------------T-C-CC----------------2011.0010100000000
...........................TTCATTAGTTGGCTAATTGGG...............................................................................................................................................................................................................................................................................................................................................................2111.0010000000100
.......................................................................................................................................................................................................................................................TCTCGTTATTTATATTTGTCATCGTGA.............................................................................................................................2711.0010000000100
....................................................................................................................................................................................................................................................................................................................................CTTCCGTAT-TCTGTTTTCGC-------...............................................2011.0010100000000
..............................ATTAGTTGGCTAATTGGGCTGTAAGTG......................................................................................................................................................................................................................................................................................................................................................2711.0010000000100
...............................................................................................................................................................................................................................................................TTTATATTTGTCATCGTGACGTTT........................................................................................................................2411.0010000000100
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---AA-C...........................................................................................2211.0010000000100
........................................................................................................................AACGTATCGTATCCCTCTTCCATT-..............................................................................................................................................................................................................................................................2411.0010000000100
...............................................................................................................................................................................................................................................................................TGACGTTTGACATTTC----------G-GG---A..............................................................................................2011.0010000001000
...................................................TAAGTATC--ATCG--AGCTCCTCGCACC...............................................................................................................................................................................................................................................................................................................................2511.0010000000100
....................AGCGATCTTCATTAGTTGGC.......................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................TAGTTGGCTAATTGGGCTGTAAG........................................................................................................................................................................................................................................................................................................................................................2311.0010000000100
...............................TTAGTTGGCTAATTGGGCTGTAAG........................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
...........................................................................................................................................................................................................................................................................ATCGTGACGTTTGACATTTC----------......................................................................................................2011.0010000000100
...............................TTAGTTGGCTAATTGGGCTGGTG.........................................................................................................................................................................................................................................................................................................................................................2320.5010000000100
droPer2
TATGCTACAATCATTCCCGGAGCGATCTTCATTAGTTGGCTAATTGGGCTGTAAGTATC--ATCG--AGCTCCTCGCACCGATTTTGAGTCCCC-CCCCGGCTTGA--TTAGATGTTGTAAACGTATCGTATCCCTCTTCCATT-TGTA--------------------TAAAC-----------------------------------------------------------AAAACCTCCTGATTTCTCGTTATTTATATTTGTCATCGTGACGTTTGACATTTC----------G-GG---AA-CCGCCGACTCTGCTCCGCTTCCGTAT-TCTGTTTTCGC-------TGG----T-----------------T-C-CC----------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................GTAAGTATC--ATCG--AGCTCCTCGCAC................................................................................................................................................................................................................................................................................................................................2517.007250000
...GCTACAATCATTCCCGGAGC........................................................................................................................................................................................................................................................................................................................................................................................2015.005500000
..............................ATTAGTTGGCTAATTGGGCTG............................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................C----------G-GG---AA-CCGCCGACTCTGCTC.............................................................................2111.001010000
......................................................................................................................................................................................................................................................................................TGACATTTC----------G-GG---AA-CCGCCGA.....................................................................................2111.001010000
..............................................................................................................................................................................................................................................................................................................................................TCTGTTTTCGC-------TGG----T-----------------T-C-CC----------------1911.001100000
....................................................................................................................................................................................................................................................................................................................................CTTCCGTAT-TCTGTTTTCGC-------TGG----T-----------------......................2411.001010000
..............................................................................................................................................................................................................................................................................GTGACGTTTGACATTTC----------G-GG---...............................................................................................2011.001001000
..................................................GTAAGTATC--ATCG--AGCTCCTC....................................................................................................................................................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................AC-----------------------------------------------------------AAAACCTCCTGATTTCTCG...................................................................................................................................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................TCCGTAT-TCTGTTTTCGC-------TGG----T-----------------T-....................2311.001010000
.........................................................TC--ATCG--AGCTCCTCGCACCGA.............................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................TGTTGTAAACGTATCGTATCC.........................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................................................................................................................................................................................................GTTTGACATTTC----------G-GG---AA-CCGC........................................................................................2111.001010000
........AATCATTCCCGGAGCGATCTT..................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................TTCATTAGTTGGCTAATTGGGCTGTAAG........................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................................................GTAAGTATC--ATCG--AGCTCCTCGCA.................................................................................................................................................................................................................................................................................................................................2411.001010000
..................................................GTAAGTATC--ATCG--AGCTCCTCGC..................................................................................................................................................................................................................................................................................................................................2311.001010000
...............................TTAGTTGGCTAATTGGGCTG............................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................A--TTAGATGTTGTAAACGTATC...............................................................................................................................................................................................................................................................................2111.001001000
....................AGCGATCTTCATTAGTTGGC.......................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droWil2
TATGCTACAATCATACCCGGAACAATCCTCATTAGTTGGCTAACTGGGCTGTAAGTATG--TTT----GA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................CATTAGTTGGCTAACTGGGCT.............................................................................................................................................................................................................................................................................................................................................................2111.00101000
droVir3
TATGCAACGATCATTCCCGGAACGATCCTAATTAGTTGGCTGACTGGGCTGTAAGTATT--TATGCTCGA---TCGC-------------------------------AACGAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TATGCAACGATCATTCCCGGAACGATTCTCATTAGTTGGCTGACTGGGCTGTAAGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TATGCAATAATCATTCCCGGAACGATCCTCATTAGTTGGCTGACGGGGCTGTAAGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TTTGCCACAGTCATTCCCGGAACGATCGTCCTTAGTTGGCTAACTGGTTTGTAAGTATCTTCAT----GC--------------------------------TCGAAATTCGATGTTGTGCGCTTGTTG--AAC---TTCCGTT-TGTAG----------------A----ACTT---------------------------------TCATCCCTTCAGAATCCTTGAAACT-------------------------CTTT--TAGTTCGTTACATG-GGC--TCC--AT-CCGC-GAGC---AA-ATGCCGGCTCAGTTCCGTTTCCGCTTCTGCTTG-------------------------------TCTGGCT-C-CC----------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTGCCACAGTCATTCCCGGAACGATCGTCCTTAGTTGGCTAACTGGTCTGTAAGTATCTCCAT----GC--------------------------------TCGAATCTCGATGTTGTGCGCTTGTTC--AAC---TTCCGTT-TTTAG----------------A----ACTT---------------------------------TCATCCTCTCAGAAGCCTTAAAATT-------------------------CTTT--TAGTTCGTGACATC-GAC--TCC--AT-CCGC-G-AG---CATACGCCGGCTCTGTTCCGTTTCCGTTTCT-------------------------------GCTTTTCTTGCT-C-CCAGATTGTAAATAAATCSizeHit CountTotal NormTotal
No Reads
droKik1
TATGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CCCGCAAGC--------------------------------TCGA--TTCGATGTTGTGCATAAGTTA--AA---CT----TT-TGTAGATATATATATATAATTATATATCCCGAGATTCCAT-TAATTGACTG---------ATC-------------------------GT-----------------------------GACATCGTGACATA-TATATTTCTATA-TAGC-G-GA---TA-TTGCCGGCTCTGTTCCGTTTCCGCTT--CCGCTTTTGTACATTCGTGA----A-----------------A-T-CC----------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATCT-CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTT--AACTACT----TT-TGTAG----------------ACCTTATTCGAAA-CCCAT-TCTT---CTGATTTT--TGATC-------------------------TT-----------------------------AACATCGTGACA-------TTTC--CT-TCGC-G-AA---TA-TCGCCGGCTCTGTTCCGTTCCCGCATTTCCGTATAT-----------------ATT--CGCTTTGCTTGCTAT-CC-GAATGTACAT-----SizeHit CountTotal NormTotal
No Reads
droEle1
TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTT--AACTACT----TA-TGTAG----------------ATATAACTTAAAA-CCCAT-TCTT---CTGATTTT--TAATC-------------------------TA-----------------------------AACATCGTGACATC-GACATTAC--TT-TCGC-G-AA---TA-TCGCCGGCTCTGTTCCGTTCCCGCTTTTTCGTATAT-----------------AAC-------------------C----------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTTGCCACACTTATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGCTT--AACTACT----TA-TGTAG----------------ATATAACTTGAAA-CCCAT-TCTT---CTGATTTT--TGATG-------------------------TG-----------------------------AACATCGTGACATT-GACATTTC--TT-TCGC-G-AA---TA-TCGCCGGCTCTGTTCCGTTTCCGCTTTTTCGTAAAT-----------------AAC--CGCTTTGCCTACTTCCCC----------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTTGCCACACTTATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--TAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTAT--AAC---------------G----------------ACATAACCCGAAC-CACAT-TCTT---CTGATTTT--TGATC-------------------------CA-----------------------------AACATCGTGACATC-GACATTTC--TTATCGCCG-GA---TA-TCGCCGGC-CTGTTCCGTTTCCGCTTTTCCGTA-AT-----------------ATC--CGCTTTGCTTGC-----C----------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCCTGTAT--AACGAC------------G----------------ACATAACCCGA-A-CCCAT-TCTT---CTGATTTT--TGATC-------------------------TA-----------------------------AACATCGTGACATC-GACATTCT--TT-ACGC-G-GA---TA-TCGCCGGCTCTGTTCCGTTTCCGCTTTTCCGTATAT-----------------ATC--CGCTTTGCTTGC-----C----------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTTGCCACAGTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--ACC----GC--------------------------------TCGA--TTCGATGTTGTTCGCTTGTTT--AACTACT----TAATGTAG----------------ACTTAACCCGTAA-CCCATTTCTT---CTGATTTTGATGAAC-------------------------TA-----------------------------AACATCGTGACATA-GACATTTC--TT-TCGC-G-GA---CT-TCGCCGGCTCTGTTCCGTTTCCGCTTTTCCGTATTTAT-------------ATATCTAAGCTTTGCTTGCTAACCA----------------SizeHit CountTotal NormTotal
No Reads
dm3
TTAGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTTTTACTACT----TT-CGTAG----------------ACATAACCCGAAA-CCCAT-TCTT---CTGATTTA--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTCTCTT-TCGC-G-GCTAATT-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATAT---------------TAATC--CGC-------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............TTCCCGGAACGATCCTACTTAGTTGGC.......................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000100000
..............TCCCGGAACGATCCTACTTAGTTGGC.......................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........ACTCATTCCCGGAACGATCCTACTT..............................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CACTCATTCCCGGAACGATCCTACT...............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................C-GACATTTCTCTT-TCGC-G-GCTAATT-T...........................................................................................2611.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CATTCCCGGAACGATCCTACTTAGT...........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......ACACTCATTCCCGGAACGATC....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TTCCCGGAACGATCCTACTTAGT...........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.TAGCCACACTCATTCCCGGAAC........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACGATCCTACTTAGTTGGC.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ACATTTCTCTT-TCGC-G-GCTAAT..............................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGGCTAACTGGTCTGTAAGTA......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
TTAGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-TACTACT----TT-CGTAG----------------ACATAACCCGAAA-CCCAT-TCTT---CTGATTTT--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GCTA-AT-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATAT---------------TTATC--CGCTTTG---------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................AACTGGTCTGTAAGTATC--..................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
TTAGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-TACTACT----TT-CGTAG----------------ACATAACCCGAAA-CCCAT-TCTT---CTGATTTA--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GCTA-AT-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATAT---------------TTATC--CGCTTTG---------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--CAC----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-TACTACT----TT-TGTAG----------------ACTTAACCCGAAA-CCCAT-TCTT---CTGATTTA--CAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GC---TATTTGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATATA--------ATATATAAATC--CGCTTTGCTTGCTAC-CC----------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TTTGCCACACTCATTCCCGGAACGATCCTACTTAGTTGGCTAACTGGTCTGTAAGTATC--TTT----GC--------------------------------TCGA--TTCGATGTTGTGCGCTTGTTTT-AACTACT----TT-TGTAG----------------ACTTAACCCGAAA-CCCAT-TCTT---CTGATTTA--TAATC-------------------------CG-----------------------------AACATCGTGACATC-GACATTTC--TT-TCGC-G-GC---TA-TCGCCGGCTCTGTTCCGATTCCGCTTTTCCGTATATAC-------ATA----TATC-------------------C----------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........CATTCCCGGAACGATCCTACC...............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..............................................................................................................................................................................................................................................................................GTGACATC-GACATTTC--TT-TCGC-G-G...................................................................................................2411.0010000100

Generated: 05/18/2015 at 12:27 AM