ID:

dps_131

 Coordinate:

XL_group1e:8374759-8374817 -

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

  1. dps-mir-2543a-2  XL_group1e:8374048-8374069 -
  2. dps_131  XL_group1e:8374796-8374817 -
  3. dps-mir-2543a-1  Unknown_singleton_1920:1461-1482 +

Sense Strand Reads

AACCTTTATCTCAAAATTTCTGCAAACCTGCCAGAGAGGGCTTTTGGTTTATCCTATCTGCTGTGGTTTATGTAGAATTCGAAAGTCATATGCTACGGCGGATAGGAGCAATCATTAGCCACAAAGCCAACTATCCGTGGATATCTAGTTCGTTGGGCG

***********************************...((((..(((((..((((((((((((((((.((((..............)))).))))))))))))))))..)))))..))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V112

male body		 SRR902011

testis

 M040

female body

 GSM444067

head

 GSM343916

embryo

 M022

male body		 M062

head

 M059

embryo

 SRR902010

ovaries

 SRR902012

CNS imaginal disc
........................................................................................TATGCTACGGCGGATAGGAG................................................... 20 0 1 937.00 937 820 9 95 11 1 0 1 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGC.................................................. 21 0 1 696.00 696 531 2 91 14 25 7 17 9 0 0
........................................................................................TATGCTACGGCGGATAGGAGCA................................................. 22 0 1 318.00 318 209 2 67 12 12 7 2 7 0 0
..................................................ATCCTATCTGCTGTGGTTTATG....................................................................................... 22 0 3 271.67 815 64 699 32 4 8 1 2 0 4 1
..................................................ATCCTATCTGCTGTGGTTTA......................................................................................... 20 0 3 106.00 318 37 260 16 2 0 1 1 0 1 0
..................................................ATCCTATCTGCTGTGGTTTAT........................................................................................ 21 0 3 64.67 194 40 142 11 0 0 0 0 0 0 1
........................................................................................TATGCTACGGCGGATAGGAGCC................................................. 22 1 1 60.00 60 46 0 3 5 0 5 1 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGT.................................................. 21 1 1 41.00 41 33 0 6 0 1 0 1 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCCC................................................ 23 2 1 34.00 34 27 0 4 1 0 2 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCCT................................................ 23 2 1 26.00 26 22 0 1 0 0 2 1 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATG....................................................................................... 22 1 5 22.40 112 44 0 51 2 8 3 0 4 0 0
..................................................ATCCTATCTGCTGTGGTTT.......................................................................................... 19 0 3 19.67 59 11 42 6 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCT................................................. 22 1 1 19.00 19 9 1 6 0 0 3 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATC....................................................................................... 22 1 3 17.33 52 8 41 3 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGA.................................................... 19 0 1 17.00 17 9 1 3 1 0 0 3 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGA.................................................. 21 1 1 11.00 11 5 1 2 1 1 1 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCAA................................................ 23 0 1 10.00 10 7 0 2 0 1 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATT....................................................................................... 22 1 3 9.00 27 3 23 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCAT................................................ 23 1 1 8.00 8 6 0 2 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGA...................................................................................... 23 1 3 7.67 23 0 21 0 0 0 2 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCCCT............................................... 24 2 1 7.00 7 5 0 0 0 0 2 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTAT........................................................................................ 21 1 5 6.60 33 5 0 25 2 1 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGTAG.................................................................................... 25 0 1 6.00 6 0 6 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTAA........................................................................................ 21 1 3 5.67 17 0 17 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAA................................................... 20 1 1 4.00 4 3 0 1 0 0 0 0 0 0 0
.........................................................................................ATGCTACGGCGGATAGGAGCA................................................. 21 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTA......................................................................................... 20 1 6 3.67 22 5 0 16 1 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGTC..................................................................................... 24 1 3 3.67 11 1 10 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGT...................................................................................... 23 0 3 3.67 11 1 9 1 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATCT...................................................................................... 23 1 3 3.33 10 0 9 1 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTC......................................................................................... 20 1 3 3.33 10 0 10 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGGG................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTTATG....................................................................................... 23 0 3 3.00 9 1 6 2 0 0 0 0 0 0 0
........................................................................................TGTGCTACGGCGGATAGGAGC.................................................. 21 1 1 3.00 3 0 0 0 0 0 0 1 2 0 0
........................................................................................TATGCTACGGCGGATAGGAGCCCC............................................... 24 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGTAG................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................ATGCTACGGCGGATAGGAGC.................................................. 20 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATGT...................................................................................... 23 1 5 2.60 13 8 0 4 1 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTCC........................................................................................ 21 2 3 2.33 7 1 6 0 0 0 0 0 0 0 0
.......................................................................................CTATGCTACGGCGGATAGGAG................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGGTAGGAGC.................................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTT.......................................................................................... 19 1 6 2.00 12 8 0 4 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCTT................................................ 23 2 1 2.00 2 0 0 1 0 0 1 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAAA.................................................. 21 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.........................................................................................ATGCTACGGCGGATAGGAGCAA................................................ 22 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0
........................................................................................TATGCTAAGGCGGATAGGAGC.................................................. 21 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0
..................................................ATCCTATCTGCTGTGGTTTAAA....................................................................................... 22 2 3 2.00 6 0 6 0 0 0 0 0 0 0 0
........................................................................................TATTCTACGGCGGATAGGAGC.................................................. 21 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGTCC................................................ 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATATGAGC.................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGTT................................................. 22 2 1 2.00 2 0 0 0 1 0 0 1 0 0 0
........................................................................................AATGATACGGCGGATAGGAGCA................................................. 22 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGACGGATAGGAG................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGTGGATAGGAG................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATC....................................................................................... 22 2 5 2.00 10 5 0 2 0 0 1 2 0 0 0
........................................................................................TATGCTACGGCGGATAGGT.................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................ATGCTACGGCGGATAGGAG................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
........................................................................................TATGCTACGTCGGATAGGAG................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCCA................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGTTT................................................ 23 3 1 2.00 2 1 0 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGG..................................................... 18 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATTT...................................................................................... 23 1 3 1.67 5 0 5 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGTA..................................................................................... 24 0 3 1.67 5 0 5 0 0 0 0 0 0 0 0
........................................................................................TATGCAACGGCGGATAGGAG................................................... 20 1 5 1.40 7 5 0 0 2 0 0 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTTATAA...................................................................................... 24 2 3 1.33 4 0 4 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATTAT..................................................................................... 24 3 3 1.33 4 0 4 0 0 0 0 0 0 0 0
...................................................TCCTATCTGCTGTGGTTTATG....................................................................................... 21 0 3 1.33 4 0 2 2 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTT........................................................................................... 18 0 3 1.33 4 0 4 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTAA........................................................................................ 21 2 6 1.17 7 4 0 3 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGGGGTTTA......................................................................................... 20 1 3 1.00 3 1 2 0 0 0 0 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTTA......................................................................................... 21 0 3 1.00 3 0 3 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGAA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................CATGCTACGGCGGATAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGACCA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTT......................................................................................... 20 1 3 1.00 3 1 2 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGCGCA................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGCTAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................CTATGCTACGGCGGATAGGAGTA................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................ATGCTACGGCGGATAGGAA................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TTTGCTACGGCGGATAGGAGC.................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................................................................................TATGCTACGGCGGATAAGAG................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCTCCC.............................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGTTACGGCGGATAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGAC................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGGTAGGGGCT................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAACA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGTAGAATA................................................................................ 29 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGTCGGATAGGAGCA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TACGCTACGGCGGATAGGAGCA................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................................................................................TAAGCTACGGCGGATAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGTAGA................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TCTGCTACGGCGGATAGGAGC.................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAAGAGCA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTATGGCGGATAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCATA............................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTAAAA...................................................................................... 23 3 3 1.00 3 0 3 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGG.................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGTCT................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................TGTAGAATTCGAAAGTCATATGCTAC............................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGACGGATAGGAGT.................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATA....................................................................................... 22 1 3 1.00 3 0 3 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGGTAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TATACGGCGGATAGGAGCA................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TCCTATCTGCTGTGGTTTATGTAGAAT................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGACCCC................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCG................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATTCTACGGCGGATAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGTTAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCAC................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGATACGGCGGATAGGAGC.................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TATGCTACGACGGATAGGAGCA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGGGCG................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGCTAGGAGG.................................................. 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................TATGATACGGCGGATAGGAGCT................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGTAA................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGGGCA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGAATAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACTGCGGATAGGAGCA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTTATGTAG.................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TAGGCTACGGCGGATAGGAGCA................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TACGCTACGGCGGATAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TCCTATCTGCTGTGGTTTATGTAGAA.................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATCGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGTT................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCAAA............................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TACGCTACGGCGGATAGGAGCAC................................................ 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................................................................................TGTGCTACGGCGGATAGGAG................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................................................................................TATGCTACGCCGGATAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................ATACTACGGCGGATAGGAGC.................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACCGCGGATAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATCCTACGGCGGATAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TAGGCTACGGCGGATAGGGG................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGAAAGGAGC.................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCCCTC.............................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAT................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................ATGCTACGGCGGATAGGA.................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCTTCC.............................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGGGCC................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGCAAG............................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATCCTACGGCGGTTAGGAGCA................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........................................................................................TATGCTACCGCGGATAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGGGGTTTATG....................................................................................... 22 1 3 1.00 3 0 3 0 0 0 0 0 0 0 0
.........................................................................................ATGCTACGGCGGATAGGAGCAAA............................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGGTAGGAGCCT................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGCTAGGAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGAGGATAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAAGAGCCC................................................ 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGTC................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGCAGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGCTAGGAGCA................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGACAGGAG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................CCAGAGAGGGCTTTTGGTTT............................................................................................................. 20 0 5 0.80 4 0 4 0 0 0 0 0 0 0 0
........................................................................................TATGCAACGGCGGATAGGAGCA................................................. 22 1 5 0.80 4 2 0 1 0 0 0 1 0 0 0
..................................................ATCCTATGTGCTGTGGTTTCC........................................................................................ 21 3 6 0.67 4 1 0 1 0 0 2 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTT.......................................................................................... 20 0 3 0.67 2 1 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGAAAA................................................................................... 26 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTGTG....................................................................................... 22 1 3 0.67 2 0 0 0 1 1 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGAAAAA.................................................................................. 27 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTC......................................................................................... 20 2 6 0.67 4 2 0 2 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTCT........................................................................................ 21 1 3 0.67 2 1 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTCC......................................................................................... 20 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0
........................................................................................TATGCGACGGCGGATAGGAGC.................................................. 21 1 3 0.67 2 0 0 0 0 0 0 1 1 0 0
..................................................ATCCTATCTGCTGTGGTTTCTT....................................................................................... 22 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGAA..................................................................................... 24 1 3 0.67 2 0 2 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATT....................................................................................... 22 2 6 0.50 3 1 0 2 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGATAGGAGTTC................................................ 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCGGAAAGGAG................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATGTC..................................................................................... 24 2 5 0.40 2 2 0 0 0 0 0 0 0 0 0
.................................................TATCCTATGTGCTGTGGTTTATG....................................................................................... 23 1 5 0.40 2 1 0 1 0 0 0 0 0 0 0
...................................................TCCTATGTGCTGTGGTTTATG....................................................................................... 21 1 5 0.40 2 1 0 1 0 0 0 0 0 0 0
......................................................TATGTGCTGTGGTTTATG....................................................................................... 18 1 5 0.40 2 0 0 2 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATGA...................................................................................... 23 2 5 0.40 2 1 0 0 0 0 1 0 0 0 0
..................................................TTCCTATCTGCTGTGGTTTA......................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATCCT..................................................................................... 24 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTTATT....................................................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCAGATAGGAGCA................................................. 22 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0
..................................................ATCCTATCTGCTTTGGTTTA......................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCCGCTGTGGTTTA......................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATTTGCTGTGGTTTATG....................................................................................... 22 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGGGGTTTATA....................................................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.....................................................CTATCTGCTGTGGTTTATG....................................................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................AACCTATCTGCTGTGGTTTAT........................................................................................ 21 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTA.......................................................................................... 19 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCAGATAGGAG................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTG.............................................................................................. 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................AACCTATCTGCTGTGGTTTATG....................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATTTA..................................................................................... 24 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTTATC....................................................................................... 23 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
..................................................ATCCTATCTGCCGTGGTTTA......................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGCGGTTTATG....................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.................................................TATCCTATCTGCTGTGGTTTAT........................................................................................ 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................ATTCTATCTGCTGTGGTTTATG....................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATTC...................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................TCCTATCTGCTGTGGTTTA......................................................................................... 19 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGGC..................................................................................... 24 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATAA...................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTAGTTTAA........................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGT............................................................................................ 17 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTAATG....................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................GTCCTATCTGCTGTGGTTTAA........................................................................................ 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................TCCTATCTGCTGTGGTTT.......................................................................................... 18 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCCTATCTGTTGTGGTTTAT........................................................................................ 21 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................TCCTATCTGCTGTGGTTTAT........................................................................................ 20 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCTTATCTGCTGTGGTTTATG....................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.................................................AATCCTATCTGCTGTGGTTTA......................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGAGGTTTATGTA..................................................................................... 24 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATCC...................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGTAA.................................................................................... 25 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................TCCTATGTGCTGTGGTTTA......................................................................................... 19 1 6 0.33 2 0 0 2 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATCCA..................................................................................... 24 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGTTTTC......................................................................................... 20 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0
..................................................ATCCTATCTGCTGTGTTTTATG....................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TATGCTACGGCAGATAGGAGCCT................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGG............................................................................................. 16 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ACCCTATCTGCTGTGGTTTATG....................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATCG...................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTACCTGCTGTGGTTTATT....................................................................................... 22 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..................................................ATCCTATCAGCTGTGGTTTATG....................................................................................... 22 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATGC...................................................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGCGGTTTAT........................................................................................ 21 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTATCTT..................................................................................... 24 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTTCT....................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0
....................................................ATTATCTGCTGTGGTTTATG....................................................................................... 20 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0
........................................................................................TATGTTACGGTGGATAGGAGT.................................................. 21 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0
....................................................CCTATGTGCTGTGGTTTAT........................................................................................ 19 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCCTATGCGCTGTGGTTTATG....................................................................................... 22 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.................................................CATCCTATGTGCTGTGGTTTATG....................................................................................... 23 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCCCATGTGCTGTGGTTTATG....................................................................................... 22 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATTT...................................................................................... 23 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TATGCAACGGCGGATAGGAGCAT................................................ 23 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGCTTAT........................................................................................ 21 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..................................................GTCCTATGTGCTGTGGTTTATG....................................................................................... 22 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
...................................................TCCTATGTGCTGTGGTTTAT........................................................................................ 20 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..................TCTGCAAACCTGCCAGAGAGGGC...................................................................................................................... 23 0 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATA....................................................................................... 22 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATCT...................................................................................... 23 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
........................................................................................TATGCAACGGCGGATAGGA.................................................... 19 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTATCC...................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0
........................................................................................TATACAACGGCGGATAGGAGC.................................................. 21 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................TATCTACGGCGGATAGGAGC.................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTTCAA....................................................................................... 22 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTAC........................................................................................ 21 2 6 0.17 1 0 0 0 0 0 0 0 1 0 0
..................................................ATCCTATCTGCTGTGGGTTCC........................................................................................ 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGGTTTAAA....................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0
....................................................CCTATGTGCTGTGGTTTA......................................................................................... 18 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0
..................................................ATCCTATCTGCTGTGGTTATC........................................................................................ 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0
..................................................ATCCTCTGTGCTGTGGTTTATT....................................................................................... 22 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
..................................................ATCTTATGTGCTGTGGTTT.......................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................GCTATCTGGTTCGTTGGG.. 18 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0
..................................................ATTCTGTCTGCTGTGGTTT.......................................................................................... 19 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0
............................TGGCAGAGCGGGCTTTTGGGT.............................................................................................................. 21 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0
..................................................ATCCTATGTGCTGTGCTT........................................................................................... 18 2 13 0.08 1 0 0 0 0 0 1 0 0 0 0
............................................................................................CTTCGGCGGAAAGGAGCAC................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TTGGAAATAGAGTTTTAAAGACGTTTGGACGGTCTCTCCCGAAAACCAAATAGGATAGACGACACCAAATACATCTTAAGCTTTCAGTATACGATGCCGCCTATCCTCGTTAGTAATCGGTGTTTCGGTTGATAGGCACCTATAGATCAAGCAACCCGC

************************************...((((..(((((..((((((((((((((((.((((..............)))).))))))))))))))))..)))))..))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 GSM444067

head

 M059

embryo
.................................................ATAGGATAGACGACACCAAAT......................................................................................... 21 0 3 0.33 1 0 1 0
..................................................TAGGATAGACGACACCAAAT......................................................................................... 20 0 3 0.33 1 1 0 0
...............................................AAATAGGATACACGACACCAAAT......................................................................................... 23 1 5 0.20 1 1 0 0
..........................................................CCGACACCAAATAGATCT................................................................................... 18 2 9 0.11 1 0 0 1
....................................................................................................................TCGGCGTTTTGGTTAATAGGC...................... 21 3 16 0.06 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XL_group1e:8374709-8374867 - dps_131 confident AACCTT---TATCTCAAAATTTCTGCAAACCTGCCAG-----------------------------------------AGAGGGC----TTTTGGTTTATCCTATCTGCTGTGGTTTATGTAGAATTCGAAAGTCATATGCTACGGCGGATAGGAGCAATCATTAGCCACAAAGCCAACTATCCGTG-GATATCTAGTTCGTTGGGCG
droPer2 scaffold_13:187400-187541 + dpe_295 confident TCT---------------------GCAAACCTGCCAG-----------------------------------------AGAGGGC----TTTTGGTTTATCCTATGCGCTGTGGTTTATGTACAATTCGGAAGTCATATGCAACGGCGGATAGGAGCAATCATTAGCCACAAAGCCAACTATCCGTGGGATATCTAGTTCGTTGGGCG
droWil2 scf2_1100000004540:2074013-2074077 + AAGTAT---CAAA-----TTTGATCCAAATCGGACAAAAAAT-----------AAT----------------GCCG-GAGTTGGC----CGTTG----------TCTGCTGGG---------------------------------------------------------------------------------------------GT
droVir3 scaffold_12963:13009175-13009216 + TATCAT-------------------------------------------------------------------------------------------------ATCCGCTGGGAGTTATGTCGTTTTGGAACGTCAT---------------------------------------------------------------------AT
droMoj3 scaffold_6500:30311469-30311597 + TTTCGGTT-TTTGTAAAA--ATTTACCCTCCACCCCT----------------AATTTACCCCCTCACTCTCATTTG-TAAAAGG----CGTATT-------------------------TCAAATACTAGAGACTTGTGCTTTGGCAAATATATGCAT-----ATCCATGTATCCAAGTT-------------------------TC
droAna3 scaffold_13248:3645039-3645059 + AATGTT---TATCTTAATTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droBip1 scf7180000396589:813486-813537 - ATTTTA---CAATTCAAAATTTCTTCTAGCCTCCTGG-----------------------------------------AGGGTAT----TGTTGTCTT------------------------------------------------------------------------------------------------------------AT
droEle1 scf7180000488688:12809-12862 - TTCAGT---A-----------------TAGCTGCTGA-----------------------------------------AGATAGC----TTTTGGGTTGCTGCACCTGCTATGCTCT-----------------------------------------------------------------------------------------AT
droRho1 scf7180000766583:28058-28077 + AAATTT---TATCTTAAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC
droBia1 scf7180000301480:16654-16710 - CAAAGT---T-----------TTTACAAACTTATTCG-----------------------------------------CGAGGGT----TTTGTTTTGTTGTTAGCTGCTGTTG--------------------------------------------------------------------------------------------TT
droTak1 scf7180000415367:223606-223646 + TTTCTT---TAG---------------------------------------------------------------------------------------------------------------AATTCGAAATTTATATGCTAATTCAGGTAGA-----------------------------------------------------A
droEug1 scf7180000408984:232937-232971 + CACATT---TTTGTCAATA--TCTATCGATTTACCAA-----------------------------------------AGA-------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:559401-559458 - AACGGA---TATCTAA--------------TAGCCGG-----------------------------------------AGAACGC----GATTGTAGCATTCTCTCTTCTTTTTTTTA----------------------------------------------------------------------------------------TG
droSec2 scaffold_8:1009858-1009924 + ATGTAACATTGGCACAAA----------------------------------------------------------------------------------------------------------------AAACCAGAAGCTAAGGCAAAAAGGAGCAAAAGGCAGCCAGAGAGTCA-----------------------------AC
droYak3 v2_chrUn_5178:8735-8826 + ATTTGC---CAAAAAACT--TTT--------TGCCAAAAAACTTTTTGTTCCTAAT----------------GTCTGGTGATGGTGTGCGGTTGATG---------TAATGTATTTTATGT------------TCATATA------------------------------------------------------------------TT
droEre2 scaffold_4843:66651-66706 - ATTTGT---CTTGTAAAT--TTCTACTGATTTCCCAC-----------------------------------------ATAATCG----TTTTGGCCCACTATA------------------------------------------------------------------------------------------------------TC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AACCTT---TATCTCAAAATTTCTGCAAACCTGCCAG-----------------------------------------AGAGGGC----TTTTGGTTTATCCTATCTGCTGTGGTTTATGTAGAATTCGAAAGTCATATGCTACGGCGGATAGGAGCAATCATTAGCCACAAAGCCAACTATCCGTG-GATATCTAGTTCGTTGGGCGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................................................................................TATGCTACGGCGGATAGGAG....................................................201937.0093709501111820090
........................................................................................................................................TATGCTACGGCGGATAGGAGC...................................................211696.006967919172514531020
........................................................................................................................................TATGCTACGGCGGATAGGAGCA..................................................221318.00318767721212209020
..................................................................................................ATCCTATCTGCTGTGGTTTATG........................................................................................223271.6781513202846446991
..................................................................................................ATCCTATCTGCTGTGGTTTA..........................................................................................203106.0031811601023712600
..................................................................................................ATCCTATCTGCTGTGGTTTAT.........................................................................................21364.6719401100004001421
........................................................................................................................................TATGCTACGGCGGATAGGAGCC..................................................22160.006053010546000
........................................................................................................................................TATGCTACGGCGGATAGGAGT...................................................21141.004106011033000
........................................................................................................................................TATGCTACGGCGGATAGGAGCCC.................................................23134.003424000127000
........................................................................................................................................TATGCTACGGCGGATAGGAGCCT.................................................23126.002621010022000
..................................................................................................ATCCTATCTGCTGTGGTTT...........................................................................................19319.6759060000110420
........................................................................................................................................TATGCTACGGCGGATAGGAGCT..................................................22119.00193600009010
..................................................................................................ATCCTATCTGCTGTGGTTTATC........................................................................................22317.335203000080410
........................................................................................................................................TATGCTACGGCGGATAGGA.....................................................19117.00170303019010
........................................................................................................................................TATGCTACGGCGGATAGGAGA...................................................21111.00111200115010
........................................................................................................................................TATGCTACGGCGGATAGGAGCAA.................................................23110.00100200107000
..................................................................................................ATCCTATCTGCTGTGGTTTATT........................................................................................2239.002701000030230
........................................................................................................................................TATGCTACGGCGGATAGGAGCAT.................................................2318.0080200006000
..................................................................................................ATCCTATCTGCTGTGGTTTATGA.......................................................................................2337.672320000000210
..................................................................................................ATCCTATCTGCTGTGGTTTATGTAG.....................................................................................2516.0060000000060
..................................................................................................ATCCTATCTGCTGTGGTTTAA.........................................................................................2135.671700000000170
........................................................................................................................................TATGCTACGGCGGATAGGAA....................................................2014.0040100003000
.........................................................................................................................................ATGCTACGGCGGATAGGAGCA..................................................2114.0040400000000
..................................................................................................ATCCTATCTGCTGTGGTTTATGTC......................................................................................2433.671100000010100
..................................................................................................ATCCTATCTGCTGTGGTTTATGT.......................................................................................2333.67110100001090
..................................................................................................ATCCTATCTGCTGTGGTTTC..........................................................................................2033.331000000000100
.................................................................................................TATCCTATCTGCTGTGGTTTATG........................................................................................2333.0090200001060
........................................................................................................................................TATGCTACGGCGGATAGGAGCCCC................................................2413.0030000003000
.........................................................................................................................................ATGCTACGGCGGATAGGAGC...................................................2013.0030300000000
..................................................................................................ATCCTATCTGCTGTGGTTTCC.........................................................................................2132.3370000001060
........................................................................................................................................TATGCTACGGCGGATAGGAGCTT.................................................2312.0021100000000
........................................................................................................................................TATGCTACGGCGGATAGGAAA...................................................2112.0020000001010
.........................................................................................................................................ATGCTACGGCGGATAGGAGCAA.................................................2212.0020100000010
..................................................................................................ATCCTATCTGCTGTGGTTTAAA........................................................................................2232.0060000000060
........................................................................................................................................TATGCTACGGCGGATAGGAGTCC.................................................2312.0020000002000
........................................................................................................................................TATGCTACGGCGGATAGGAGTT..................................................2212.0020001010000
........................................................................................................................................TATGCTACGGCGGATAGGT.....................................................1912.0020000002000
.........................................................................................................................................ATGCTACGGCGGATAGGAG....................................................1912.0020200000000
........................................................................................................................................TATGCTACGGCGGATAGGAGTTT.................................................2312.0020100001000
........................................................................................................................................TATGCTACGGCGGATAGG......................................................1812.0020100010000
..................................................................................................ATCCTATCTGCTGTGGTTTATGTA......................................................................................2431.6750000000050
.................................................................................................TATCCTATCTGCTGTGGTTTATAA.......................................................................................2431.3340000000040
..................................................................................................ATCCTATCTGCTGTGGTTTATTAT......................................................................................2431.3340000000040
...................................................................................................TCCTATCTGCTGTGGTTTATG........................................................................................2131.3340200000020
..................................................................................................ATCCTATCTGCTGTGGTT............................................................................................1831.3340000000040
.................................................................................................TATCCTATCTGCTGTGGTTTA..........................................................................................2131.0030000000030
..................................................................................................ATCCTATCTGCTGTGGTTTT..........................................................................................2031.0030000001020
.........................................................................................................................................ATGCTACGGCGGATAGGAA....................................................1911.0010000001000
........................................................................................................................................TATGCTACGGCGGATAGGAGAC..................................................2211.0010000001000
..................................................................................................ATCCTATCTGCTGTGGTTTATGTAGAATA.................................................................................2911.0010000000010
..................................................................................................ATCCTATCTGCTGTGGTTTATGTAGA....................................................................................2611.0010000000010
........................................................................................................................................TATGCTACGGCGGATAGGAGCATA................................................2411.0010000001000
..................................................................................................ATCCTATCTGCTGTGGTTTAAAA.......................................................................................2331.0030000000030
........................................................................................................................................TATGCTACGGCGGATAGGG.....................................................1911.0010000001000
........................................................................................................................................TATGCTACGGCGGATAGGAGTCT.................................................2311.0010000001000
......................................................................................................................TGTAGAATTCGAAAGTCATATGCTAC................................................................2611.0010000000010
..................................................................................................ATCCTATCTGCTGTGGTTTATA........................................................................................2231.0030000000030
...................................................................................................TCCTATCTGCTGTGGTTTATGTAGAAT..................................................................................2711.0010000000010
........................................................................................................................................TATGCTACGGCGGATAGGAGCG..................................................2211.0010000001000
........................................................................................................................................TATGCTACGGCGGATAGGAGCAC.................................................2311.0010000001000
.................................................................................................TATCCTATCTGCTGTGGTTTATGTAG.....................................................................................2611.0010000000010
...................................................................................................TCCTATCTGCTGTGGTTTATGTAGAA...................................................................................2611.0010100000000
........................................................................................................................................TATGCTACGGCGGATAGGTT....................................................2011.0010100000000
........................................................................................................................................TATGCTACGGCGGATAGGAGCAAA................................................2411.0010100000000
........................................................................................................................................TATGCTACGGCGGATAGGAT....................................................2011.0010000001000
.........................................................................................................................................ATGCTACGGCGGATAGGA.....................................................1811.0010100000000
........................................................................................................................................TATGCTACGGCGGATAGGAGCAAG................................................2411.0010000001000
.........................................................................................................................................ATGCTACGGCGGATAGGAGCAAA................................................2311.0010100000000
........................................................................................................................................TATGCTACGGCGGATAGGAGTC..................................................2211.0010000001000
.................................CCAG-----------------------------------------AGAGGGC----TTTTGGTTT..............................................................................................................2050.8040000000040
.................................................................................................TATCCTATCTGCTGTGGTTT...........................................................................................2030.6720000001010
..................................................................................................ATCCTATCTGCTGTGGTTCC..........................................................................................2030.6720000000020
........................................................................................................................................TATGCTACGGCGGATAGGAGTTC.................................................2320.5010000001000
..................................................................................................ATCCTATCTGCTGTGGTTTATCCT......................................................................................2430.3311000000000
.................................................................................................TATCCTATCTGCTGTGGTTTATT........................................................................................2330.3310000000010
.....................................................................................................CTATCTGCTGTGGTTTATG........................................................................................1930.3310000000010
..................................................................................................ATCCTATCTGCTGTGGTTA...........................................................................................1930.3310000000010
..................................................................................................ATCCTATCTGCTGTG...............................................................................................1530.3310000000010
.................................................................................................TATCCTATCTGCTGTGGTTTATC........................................................................................2330.3310001000000
.................................................................................................TATCCTATCTGCTGTGGTTTAT.........................................................................................2230.3310000001000
..................................................................................................ATCCTATCTGCTGTGGTTTATTC.......................................................................................2330.3310000000010
...................................................................................................TCCTATCTGCTGTGGTTTA..........................................................................................1930.3310100000000
..................................................................................................ATCCTATCTGCTGTGGTTTATGGC......................................................................................2430.3310000000010
..................................................................................................ATCCTATCTGCTGTGGTTTATAA.......................................................................................2330.3310000000010
..................................................................................................ATCCTATCTGCTGTGGT.............................................................................................1730.3310000000010
...................................................................................................TCCTATCTGCTGTGGTTT...........................................................................................1830.3310100000000
...................................................................................................TCCTATCTGCTGTGGTTTAT.........................................................................................2030.3310100000000
..................................................................................................ATCCTATCTGCTGTGGTTTATCC.......................................................................................2330.3310000000010
..................................................................................................ATCCTATCTGCTGTGGTTTATGTAA.....................................................................................2530.3310000000010
..................................................................................................ATCCTATCTGCTGTGG..............................................................................................1630.3310000000010
..................................................................................................ATCCTATCTGCTGTGGTTTATCG.......................................................................................2330.3310000001000
..................................................................................................ATCCTATCTGCTGTGGTTTATGC.......................................................................................2330.3310000000010
..................................................................................................ATCCTATCTGCTGTGGTTTTCT........................................................................................2240.2510000000010
.....................TCTGCAAACCTGCCAG-----------------------------------------AGAGGGC----.......................................................................................................................2350.2010000000010
..................................................................................................ATCCTATCTGCTGTGGTTTCAA........................................................................................2250.2010000000010
..................................................................................................ATCCTATCTGCTGTGGTTATC.........................................................................................2160.1710000000010
droPer2
TCT---------------------GCAAACCTGCCAG-----------------------------------------AGAGGGC----TTTTGGTTTATCCTATGCGCTGTGGTTTATGTACAATTCGGAAGTCATATGCAACGGCGGATAGGAGCAATCATTAGCCACAAAGCCAACTATCCGTGGGATATCTAGTTCGTTGGGCGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................................................................................TATGCAACGGCGGATAGGAG....................................................201967.00967036084919
........................................................................................................................................TATGCAACGGCGGATAGGAGC...................................................211224.00224134221915133
........................................................................................................................................TATGCAACGGCGGATAGGAGCA..................................................221180.00180172531023102
........................................................................................................................................TATGCAACGGCGGATAGGA.....................................................191141.0014101021137
........................................................................................................................................TATGCAACGGCGGATAGGAGT...................................................21181.00810102177
..................................................................................................ATCCTATGCGCTGTGGTTTATG........................................................................................22156.00560511544
........................................................................................................................................TATGCAACGGCGGATAGGAA....................................................20117.00170000017
........................................................................................................................................TATGCAACGGCGGATAGGAGA...................................................21117.00170100016
........................................................................................................................................TATGCAACGGCGGATAGG......................................................18116.00160101014
........................................................................................................................................TATGCAACGGCGGATAGGAGCC..................................................22113.00130001012
.........................................................................................................................................ATGCAACGGCGGATAGGAGCA..................................................21113.0013060106
........................................................................................................................................TATGCAACGGCGGATAGGAGCT..................................................22111.00110100010
..................................................................................................ATCCTATGCGCTGTGGTTT...........................................................................................19111.00110100010
........................................................................................................................................TATGCAACGGCGGATAGGAGCCT.................................................23110.0010000109
........................................................................................................................................TATGCAACGGCGGATAGGAGTT..................................................2218.008000008
..................................................................................................ATCCTATGCGCTGTGGTTTAT.........................................................................................2118.008010007
.........................................................................................................................................ATGCAACGGCGGATAGGAGC...................................................2017.007070000
..................................................................................................ATCCTATGCGCTGTGGTTTA..........................................................................................2016.006000006
........................................................................................................................................TATGCAACGGCGGATAGGTT....................................................2015.005000005
........................................................................................................................................TATGCAACGGCGGATAGGAT....................................................2015.005000005
........................................................................................................................................TATGCAACGGCGGATAGGAGTTT.................................................2314.004000004
........................................................................................................................................TATGCAACGGCGGATAGGT.....................................................1914.004000004
........................................................................................................................................TATGCAACGGCGGATAGGAGCAT.................................................2314.004020002
........................................................................................................................................TATGCAACGGCGGATAGGAGCAC.................................................2313.003000003
........................................................................................................................................TATGCAACGGCGGATAGGTTT...................................................2113.003000003
........................................................................................................................................TATGCAACGGCGGATAGGAAA...................................................2113.003000003
..................................................................................................ATCCTATGCGCTGTGGTTTC..........................................................................................2013.003000003
.........................................................................................................................................ATGCAACGGCGGATAGGAG....................................................1913.003010011
..................................................................................................ATCCTATGCGCTGTGGTTTT..........................................................................................2012.002000002
..........................................................................................................................................TGCAACGGCGGATAGGAGCA..................................................2012.002000002
........................................................................................................................................TATGCAACGGCGGATAGGATT...................................................2112.002000002
........................................................................................................................................TATGCAACGGCGGATAGGAGCCC.................................................2312.002000002
.......................................................................................................................................ATATGCAACGGCGGATAGGAG....................................................2112.002000002
........................................................................................................................................TATGCAACGGCGGATAGGAGCAA.................................................2312.002010001
..................................................................................................ATCCTATGCGCTGTGGTTTATT........................................................................................2212.002000002
..................................................................................................ATCCTATGCGCTGTGGTTTATC........................................................................................2212.002010001
...........................................................................................................................................GCAACGGCGGATAGGAGCA..................................................1911.001000001
........................................................................................................................................TATGCAACGGCGGATAGGAGCTC.................................................2311.001000001
........................................................................................................................................TATGCAACGGCGGATAGGTA....................................................2011.001000001
..................................................................................................ATCCTATGCGCTGTGGTTTATGA.......................................................................................2311.001000001
...................................................................................................TCCTATGCGCTGTGGTTTATG........................................................................................2111.001010000
..................................................................................................ATCCTATGCGCTGTGGTTTAA.........................................................................................2111.001000001
........................................................................................................................................TATGCAACGGCGGATAGGGT....................................................2011.001000001
...........................................................................................................................................GCAACGGCGGATAGGAGC...................................................1811.001010000
........................................................................................................................................TATGCAACGGCGGATAGGAGTCT.................................................2311.001000001
..........................................................................................................................................TGCAACGGCGGATAGGAG....................................................1811.001000001
........................................................................................................................................TATGCAACGGCGGATAGGAGCAAG................................................2411.001000001
........................................................................................................................................TATGCAACGGCGGATAGGG.....................................................1911.001000001
..................................................................................................ATCCTATGCGCTGTGGTTTAAA........................................................................................2211.001000001
........................................................................................................................................TATGCAACGGCGGATAGGAGG...................................................2111.001000001
.......................................................................................................................................ATATGCAACGGCGGATAGGA.....................................................2011.001000001
........................................................................................................................................TATGCAACGGCGGATAGGATTT..................................................2220.501000001
........................................................................................................................................TATGCAACGGCGGATAGGATTC..................................................2220.501000001
..................................................................................................ATCCTATGCGCTGTGGTTTCC.........................................................................................2120.501000001
........................................................................................................................................TATGCAACGGCGGATAGAGT....................................................2020.501000001
droWil2
AAGTAT---CAAA-----TTTGATCCAAATCGGACAAAAAAT-----------AAT----------------GCCG-GAGTTGGC----CGTTG----------TCTGCTGGG---------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droVir3
TATCAT-------------------------------------------------------------------------------------------------ATCCGCTGGGAGTTATGTCGTTTTGGAACGTCAT---------------------------------------------------------------------ATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................TTATGTCGTTTTGGAACGTC.........................................................................20200.1020000000000000000000000002000000000000000000000000000000000000000000000000000000
droMoj3
TTTCGGTT-TTTGTAAAA--ATTTACCCTCCACCCCT----------------AATTTACCCCCTCACTCTCATTTG-TAAAAGG----CGTATT-------------------------TCAAATACTAGAGACTTGTGCTTTGGCAAATATATGCAT-----ATCCATGTATCCAAGTT-------------------------TCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.............................................................................................................................TACTAGAGACTTGTGCTTTGGC.............................................................22200.85171700000
..........................................................................................................................AAATACTAGAGACTTGTGCTTTGGCAAA..........................................................28200.60121200000
.....................TTTACCCTCCACCCCT----------------AAT........................................................................................................................................................1930.331100000
.............................................................................................TT-------------------------TCAAATACTAGAGACTTGTGCT..................................................................24200.102000020
....................................................................................................................................GACTTGTGCTTTGGCAAATA........................................................20200.051100000
........................................................................ATTTG-TAAAAGG----CGTATT-------------------------TCA.....................................................................................21200.051100000
...............AAA--ATTTACCCTCCACCCCT----------------A..........................................................................................................................................................21200.051000010
droAna3
AATGTT---TATCTTAATTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
No Reads
droBip1
ATTTTA---CAATTCAAAATTTCTTCTAGCCTCCTGG-----------------------------------------AGGGTAT----TGTTGTCTT------------------------------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droEle1
TTCAGT---A-----------------TAGCTGCTGA-----------------------------------------AGATAGC----TTTTGGGTTGCTGCACCTGCTATGCTCT-----------------------------------------------------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droRho1
AAATTT---TATCTTAAAATT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCSizeHit CountTotal NormTotal
No Reads
droBia1
CAAAGT---T-----------TTTACAAACTTATTCG-----------------------------------------CGAGGGT----TTTGTTTTGTTGTTAGCTGCTGTTG--------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droTak1
TTTCTT---TAG---------------------------------------------------------------------------------------------------------------AATTCGAAATTTATATGCTAATTCAGGTAGA-----------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
CACATT---TTTGTCAATA--TCTATCGATTTACCAA-----------------------------------------AGA-------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AACGGA---TATCTAA--------------TAGCCGG-----------------------------------------AGAACGC----GATTGTAGCATTCTCTCTTCTTTTTTTTA----------------------------------------------------------------------------------------TGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................GAACGC----GATTGTAGCATT...........................................................................................................18114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CGC----GATTGTAGCATTCTCTCTTCTT.................................................................................................25110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TAGCCGG-----------------------------------------AGAACGC----GATTGTAGCATT...........................................................................................................2618.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TAGCCGG-----------------------------------------AGAACGC----GATTGTAGCAT............................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
.........TATCTAA--------------TAGCCGG-----------------------------------------AGAACGC----GA.....................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTGTAGCATTCTCTCTTCTTTTTTT............................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CGC----GATTGTAGCATTCTCTCTTCTTT................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................AGAACGC----GATTGTAGCATT...........................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GAACGC----GATTGTAGCATTCTCTCTTCTT.................................................................................................2812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TGTAGCATTCTCTCTTCTTTTTTTTA----------------------------------------------------------------------------------------..2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................TGTAGCATTCTCTCTTCTTTTTTT............................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CGC----GATTGTAGCATTCTCTCTTCT..................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TAGCCGG-----------------------------------------AGAACGC----GATTGTAGCATTC..........................................................................................................2712.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GAACGC----GATTGTAGCATTCTCTCTTC...................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCTAA--------------TAGCCGG-----------------------------------------AGAACGC----GATTGTA................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AACGC----GATTGTAGCATTCTCTCTTCTT.................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTGTAGCATTCTCTCTTCTTTTTTTT...........................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TATCTAA--------------TAGCCGG-----------------------------------------AGAACGC----GAT....................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TAGCCGG-----------------------------------------AGAACGC----GATTGTAGC..............................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GAACGC----GATTGTAGCATTCTCTCTTCT..................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CGC----GATTGTAGCATTCTCTCTTCTTTTTT.............................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AACGC----GATTGTAGCATTCTCTCTTCTTTT...............................................................................................2911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................AACGC----GATTGTAGCATTCTCTCTTC...................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TAA--------------TAGCCGG-----------------------------------------AGAACGC----GATTGTAGCAA............................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TTGTAGCATTCTCTCTTCTTTTTT.............................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSec2
ATGTAACATTGGCACAAA----------------------------------------------------------------------------------------------------------------AAACCAGAAGCTAAGGCAAAAAGGAGCAAAAGGCAGCCAGAGAGTCA-----------------------------ACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
ATTTGC---CAAAAAACT--TTT--------TGCCAAAAAACTTTTTGTTCCTAAT----------------GTCTGGTGATGGTGTGCGGTTGATG---------TAATGTATTTTATGT------------TCATATA------------------------------------------------------------------TTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................TGTTCCTAAT----------------GTCTGGTGATGGTGT.........................................................................................................................25101.1011010000000010
..............................................TGTTCCTAAT----------------GTCTGGTGATGGTGTGC.......................................................................................................................27100.20202000000000
..............................................TGTTCCTAAT----------------GTCTGGTGATGG............................................................................................................................22100.10101000000000
..............................................TGTTCCTAAT----------------GTCTGGTGATGGTA..........................................................................................................................24100.10101000000000
.................................................TCCTAAT----------------GTCTGGTGATGGTGTG........................................................................................................................23110.09101000000000
.................................................TCCTAAT----------------GTCTGGTGATGGTGTGC.......................................................................................................................24110.09101000000000
................................................TTCCTAAT----------------GTCTGGTGATGGTGTG........................................................................................................................24110.09101000000000
....................................................TAAT----------------GTCTGGTGATGGTGT.........................................................................................................................19110.09101000000000
................................................TTCCTAAT----------------GTCTGGTGATGGTG..........................................................................................................................22110.09101000000000
................................................TTCCTAAT----------------GTCTGGTGATGGTGTGC.......................................................................................................................25110.09101000000000
.......................................................T----------------GTCTGGTGATGGTGTGC.......................................................................................................................18130.08101000000000
droEre2
ATTTGT---CTTGTAAAT--TTCTACTGATTTCCCAC-----------------------------------------ATAATCG----TTTTGGCCCACTATA------------------------------------------------------------------------------------------------------TCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:08 PM