ID:

dps_1294

 Coordinate:

3:18205801-18205945 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dpse\GA25110-cds]; exon [dpse_GLEANR_16372:3]; CDS [Dpse\GA25110-cds]; exon [dpse_GLEANR_16372:4]; intron [Dpse\GA25110-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
star
  1. 4_group5:973801-973820 +
  2. dps_1294  3:18205858-18205877 +
  3. XL_group1a:3274575-3274594 +

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACGACGGCCACCACGGCCACGGCAGCGGCCTCCACGGGCAATCCCTTCGGTCTGCTCAGCGCCAACGAGCTGCAGGACCTGCTGATGAAGCAGCAACAGCAGCAACAGCAACAGCTCCAGCAGCAGCAGCAGCAGCTGCAACTGCAGCAGGCGGCTGCGGCCAAGGCAGCGGCGACCACGCCCTCGCCCAACAGTGCGCCCAACTTCCAGGAGCTGTTCCAACAGCAGATTGCTGCCGCCATCC
************************************************************************((.(((.(((.((.((..((.((....)).))..)).)).))).))).)).....********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M059
embryo
 M040
female body
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 GSM444067
head
........................................................................GCAGGACCTGCTGATGAAGCAGC...................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...............................................................CAACGAGCTGCAGGACCTGC.................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
.....CGGCCACCACGGCCACGGCAGCGGCCTCC................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................CAGTGCGCCCAACTTCCAGGA................................ 21 0 1 1.00 1 0 1 0 0 0
........................................AATTCCTTCGGTCTGCTCAGCGCC..................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.............................................................GCCAACGAGCTGCAGGACC..................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0
.................................................................................................................................................................................................AGTGCGCCCAACTTCCAGGA................................ 20 0 1 1.00 1 0 0 1 0 0
.......................................................................TGCAGCACCTGCTGAAGAAGC......................................................................................................................................................... 21 2 3 0.33 1 0 1 0 0 0
...........................................................................................................AGCAACAGCTCCAGCAGCAG...................................................................................................................... 20 0 3 0.33 1 0 1 0 0 0
............................................................CGCCAACGAGATGCAGGTC...................................................................................................................................................................... 19 2 5 0.20 1 0 1 0 0 0
...............................................................................................................ACAGCTCAAGCAGCAGCAGCAACAG............................................................................................................. 25 2 11 0.09 1 0 1 0 0 0
.................................................................................................................AGCTCCAGCAGCAGCAGCAGCA.............................................................................................................. 22 0 11 0.09 1 0 1 0 0 0
.................................................................................................CAGCAGCAACAGCAACAGCT................................................................................................................................ 20 0 13 0.08 1 0 1 0 0 0
.....................................................................................................AGCAACAGCAACAACTCCCGC........................................................................................................................... 21 2 18 0.06 1 0 1 0 0 0
...................................................................................................................................................GCCTGCGGCTGCGGACAAGG.............................................................................. 20 3 18 0.06 1 0 1 0 0 0
............................................................................................AGCAACAGCAGCAACAGCAACA................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
.......................................................................................GAAGAAGCATCAGCAGCAACAGCA...................................................................................................................................... 24 2 20 0.05 1 0 0 1 0 0
................................................................................................................CAGCTCCAGCAGCAGCAGCA................................................................................................................. 20 0 20 0.05 1 0 0 0 0 1
..................................................................................................AGCAGCAACAGCAACAGC................................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0
......................................................................................................GCAGCAGCAACAGCTCCAGCAGCA....................................................................................................................... 24 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

ATGCTGCCGGTGGTGCCGGTGCCGTCGCCGGAGGTGCCCGTTAGGGAAGCCAGACGAGTCGCGGTTGCTCGACGTCCTGGACGACTACTTCGTCGTTGTCGTCGTTGTCGTTGTCGAGGTCGTCGTCGTCGTCGTCGACGTTGACGTCGTCCGCCGACGCCGGTTCCGTCGCCGCTGGTGCGGGAGCGGGTTGTCACGCGGGTTGAAGGTCCTCGACAAGGTTGTCGTCTAACGACGGCGGTAGG
**********************************************************************************************************************((.(((.(((.((.((..((.((....)).))..)).)).))).))).)).....************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM444067
head
 M059
embryo
 V112
male body
............................................................................................................................................................................................GGTTGTCACGCGGGTTGAAG..................................... 20 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................TGTCACACGGGTTGAAGG.................................... 18 1 1 1.00 1 1 0 0 0
..........................................................................TCCTGGACGACTACTTCGTC....................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
............................................................................CTCGGCGACTACTTCATCGTT.................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0
....................................................................................................................................................................................................CACGGGTTGACGGTCCTCG.............................. 19 2 6 0.17 1 0 0 1 0
.................................................................TGCTCGCGGTCCTGGACGCCT............................................................................................................................................................... 21 3 6 0.17 1 0 0 0 1
....................................................................................................................................................................................................................TCGACAAGGTAGGCGTCTTAC............ 21 3 7 0.14 1 1 0 0 0
.............................................................................................................................................................................................GTGGTCTCGCGGGTTGAA...................................... 18 2 8 0.13 1 1 0 0 0
.TGCTGCCGGTGGCCCCCGTG................................................................................................................................................................................................................................ 20 3 15 0.07 1 1 0 0 0
............................................................................................................................................................................................................AAAGGTCCTCGTCAAGGT....................... 18 2 19 0.05 1 1 0 0 0
.....................................................................................................................................................................................GGGATCGGGTGGTCACGA.............................................. 18 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:18205751-18205995 + dps_1294 TACGACGGCCAC---------------C----------------ACGGC-C---ACGGCA-G--------------CGGCCTCC----------------A------CGGG-------------------CAATCCCTT---------CGGTCTGCTCAGCG---CCAACGA---------------------GCTGC---------------------------------AGGACCT-GCTGA----TGAAGCAG---C---------AACAGCAG------------CAAC--------------------AGCAACAGCTCCAGCAGC---------------AGCAG---------------------------------------------------------------CAGCAGCTGCAACT------------------GCAGC---AGG---CGGCTGCGGCCAAGGCAGCGGCG------------------------------------------------------------------------------------------A------CCACGCCCTC---GCCCAACAGTGCGCCCAA------------------CTTC------------------------------------------------------------------CAGGA--------------------------GCTGTTCCAACAGCAGATTG---------------CTGCCGCCA----------TCC--
droPer2 scaffold_34:149555-149799 + TACGACGGCCAC---------------C----------------ACGGC-C---ACGGCA-G--------------CGGCCTCC----------------A------CGGG-------------------CAATCCCTT---------CGGTCTGCTCAGCG---CCAACGA---------------------GCTGC---------------------------------AGGACCT-GCTGA----TGAAGCAG---C---------AACAGCAG------------CAAC--------------------AGCAACAGCTCCAGCAGC---------------AGCAG---------------------------------------------------------------CAGCAGCTGCAACT------------------GCAGC---AGG---CGGCTGCGGCCAAGGCAGCGGCG------------------------------------------------------------------------------------------A------CCACGCCCTC---GCCCAACAGTGCGCCCAA------------------CTTC------------------------------------------------------------------CAGGA--------------------------GCTGTTCCAACAGCAGATTG---------------CTGCCGCCA----------TCC--
droWil2 scf2_1100000004822:2998005-2998247 - AGCAGCAGCAAC---------------A----------------ACAGC-A---ACAGCA-G--------------CAACAACA-------A-------------------CAGGCGC-------------------AG---------CAGCAGGCTCAGCA---CC-------------------------------------------ATCA------------C-------------C----AGCATCACCAA---------CAA---CAGCTGC---------AACA--ACAGCAAC---AGC------AACAACAGCA------GC---AG---------CAACAG------------CAGCAGCAG------------------------------------------CAGCAACAACAACA------------------ACAGC---A---------------------------------------------------------------GCAGCAGCAGCA-------------ACAACAACAGGCCCAA---CACCATCATCA-------------------------CCAGCATCACCAG------------------CAT-------------------------------------TC-A--------------------------CAGCA-------------------ACAG--C--AGCAACA---GC-------A---AG---C------GCCGC---------AAACGC--
droVir3 scaffold_12875:5115796-5116019 + AGCAGCGACCAG---------------T----------------GCGGC-C-----GGC--------------------------------------------------GT-------------------CAATCCCTT---------TGGCCTGCTCAGCG---CCAACGA---------------------GCTGC---------------------------------AGGAGCT-GCTGC----TCAAGCAA---C---------AGCAGCAG------------CAGC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------GCAGCT------------------GCAGC---AAG---CGGCGGCTGTTAAAGCAGCAGC--------------------------------------TGCGGCT----------------------------------------------G------CCACGCCCAC---TGCGAATGGTACTACCAA------------------CTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTTCAGCAGCAAATAG---------------CCGCAGCCATTGCCGCAC-AGC--
droMoj3 scaffold_6496:24975291-24975526 - GACGACGGCGAC---------------A----------------ACGGC-G---ACGGCA-G--------------CAGCAGCC----------------A------GCGC-------------------GAATCCTTT---------CGGGCTG------------AACGA---------------------GCTGC---------------------------------AGGAGCT-ATTGC----TGAAGCAG---C---------AGCAGCAG------------CAAC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------GCAGCT------------------GCAGC---AGG---CGGCGGCTGTTAAGGCGGCTGC--------------------------------------TGCAGCGG-------------------------TGGCT---------------G------CCACGCCCACAGCTGCCAATGGGGCAGCCAA------------------TTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTCCAGCAGCAGATTG---------------CAGCAGCAATCGCCG----CAC--
droGri2 scaffold_15112:142824-143072 + AACAACGACGGC---------------CACA-------------ACGGC-A---ACAGCA-G--------------CAGCAGCA-------G-------------------CTGCT---------GGCAGCAATCCCTT---------TGGCCTGCTCAGCACCACCAATGA---------------------GTTGC---------------------------------AGGAGTT-GTTGC----TCAAGCAG---CAGCAACA------GC--------------------------------------------AGCTGCAGTCGC---------------AACAG---------------------------------------------------------------CAACAGTTGCAACTGCAGCAGCA---------ACAAC---AGG---CGGCGGCTGTCAAAGCAGCAGC--------------------------------------GGCA-------------------ACAACACAAGGC------------------------------------------------GCCACCAA------------------TTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTTCAGCAACAGATTG---------------CTGCCGCCA------------T--
droAna3 scaffold_13117:608638-608892 - TCCAGCCACAGC---------------C----------------ACAGC-C---ACAGCC-T--------------CAGCCGAT-------C------------CA-GGAA-------------------CCAGCCCTCCAGCCGCTG----CC--AG--TG----CAA----------------CA---------GCAGCA---------ACTGCACGAGCTCCAC----------------A----TGCAGCAG---CAGCAGCA------GCAGC-----------------------------------TTCAAATGCAA------GAGCAA---------CACGTGCAGCAGCTCCAGAGGCAGCAGGAGCTGGCCAGGCACGAGAAGCTGCAGCAGCAACAG------ATGCAGCGCTACTTGCAGCAGCT---------A---------------------------------------------------------CAGCTGCAGGAGCAGCTGCGGGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------GCT------CC-----------ACATCC--
droBip1 scf7180000395751:160839-161054 + TGCAGCTGGCGC---------------A----------------GCAGC-A---ACAGCA-G--------------G---CT-----------------------------CTCCAG-------------CAACACCAC---------C---------AG-------------------------CACCTCCAACAGC---------------------------------AGCACCA-GCAGC----AACAGCAA---C---------AACAACAG------------CAGC--------------------AGCAACAACAACAGCAGC---------------AGCAG---------------------------------------------------------------CAGAAGCTGAAGCA------------------GTCGC---AGG---CGG------CA-----------------------------------------------AGTGCGGCGGC------------CAAC----------------------------------------------------AACAAGGCCACCAA--------------TCT-CACC------------------------------------------------------------------AAGGA--------------------------CTCGCCCAAGCAAAAGAGCA---------------GCGCCGCCG----------AGG--
droKik1 scf7180000302385:13876-14120 + AGCAGCAGCAGC---------------A----------------ACAGC-A---ACAACA-C--------------CTGAATCT-------C-------------------CAGTTGC-------------------AC---------C-------------------------------------A---------GCAGCACCTGGGCCTTCA------------C-------------C----TGCAGCAGCAA---------CAG---CAGCTGC---------AACT--GCAACAACAACAGCAGCAACAGCACAATGTCCAGGCGC---AG---------CAACAG---------------------------------------------------------------CAGCAGATCCAAGTGCAGCAGCA---------A---------------------------------------------------------CAACAACAGCAGCAGCAGCAACAGCA-------------ACAAC------------------------------------A--CTC---GCCCTACAATG--CCAAT------------------CTGG------------------------------------------------------------------GAGGA--------------------------GGAG----------------------GCGGCATTGCTGG---AA----------TCCCT
droFic1 scf7180000454039:96060-96296 - TGCAACAGCAAC---------------A----------------ACTGC-A---ACAGCA-G--------------CAGCAGCA-------A-------------------CTACTGC-------------------AA---------CAACAG------------CAA----------------CA---------ACTG---------CAACA------------------GCAGCA-GCAGC----AACAGCAG---C---------AACAGCACCAGCAGCAACAACT--GCAGCAGC------------AGCAACAGCAG------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCACCAGCA------------GC---A---------------------------------------------------------------ACTGCAGCAGCA-------------GCAACAGCAGCAGCAA---CAGCAGCAACA-------------------------ATTGCAACAGCAG------------------CAA-------------------------------------CC-C--------------------------TTGCA-------------------ACAG--C--AACAGCA----------------------------GCCAC---------AAGTGC--
droEle1 scf7180000491193:2687381-2687600 + ACGGCCAGCACC-AT------------C----------------ACAGT-G---CG-GCAGCGGTGGCCGCCGCAGCGGCAGCC-----------------------------------------------------------------------------G---CCGTCCA---------------------TCAGC---------------------------------AACAGC-----------AGCAGGTG---CAG---CAGCAGCAGCAG------------CAGC--------------------AGCAACACCATCAGCAAC---------------AGCAG---------------------------------------------------------------CAGC---ACCAG---------------------CAGC---AGGTGGCTGCCGTTGCCATGGCGGCGATGGCCAATTTGTTGCCGCAGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT--------------------------GCTGCTGCATCAGCAGAATC---------------TGCTCACC---------AATGC--
droRho1 scf7180000779334:988738-988996 - AACAGCAGCAGC---------------A----------------GCAGC-A---ACAGCA-G--------------CAGCAACA-------G-------------------CAGC---------------A-----CAACAGCAGCAG----CC--AC--AG----C----A------G---------------CAGCAGCA---------------------------------ACT-GCAACT-GCAGCAGCAA---C---------AG------------------CA--------------------------------ACTGCAAC---AGCAACAGCAACTGCAG---------------------------------------------------------CAGCAACAGCAACTGCAGCA------------------GCAACAGCAAC---AC----------------------------------------------------------------------------------------CAGGAGCTCTACCGCC---AGCAGCAGCAACATCGCACTA---GC--ATG--------------------AGTGGCATA-------------------------GCCAGCCAGCAGCACT-----------------------------------------TGCAACAGATGGA-CG-C---AC---AGTACA--CCACA-----A----------TGCCACGT----------CCC--
droBia1 scf7180000302408:4098634-4098864 - GTCGACGGCCAC---------------C----------------ATGACCA---AC-TCC-T--------------CGTCCTCG-------GCC------ACGCCCACTCC-------------------CGGG----T---------CG--------AC-------C------------------TCCTCCAACAAC---------------------------------AGTGCCACGCTCG----AGACGCTC---C---------ACCAGCAG------------CAGC--------------------AGCACCAGCACCAGCAGC---------------TGCAG---------------------------------------------------------------CAGCAACTGCAGCA------------------GTTGC---ACA---CGAATGCGGCCA-----------------------------------------------------------------------AC----------------------------------------------------------------AA------------------TTCGCGGCCCCCCTCGCGGGCGCCCTCCATC---------------------------------------CTGGA--------------------CAGTCC--GACCCTG--GCCAGAGTG---------------GAGCG--------------GGC--
droTak1 scf7180000415762:659215-659479 - TGCCAAGGCAAC---------------C----------------ACAAC-C---ACGCAG-A--------------CATCGCCC----------------A------CGGA-------------------GGAGAAGGT---------GG---TGGTCAGTG---AA-----------G---------------TGAAGCCA---------------------------------TCG-GAAACT-GAAGGAGCAA---C---------AGCAGCAG------------CGGC--------------------AGCAACACCTCCACCACC---------------AGTAG---------------------------------------------------------------CAGCTCCTGC---C------------------CCACC---AGC---CACACCTGCCCAAGTGAATGGCA------------------------------------------------------------------------------------------ACAACAAT-GAGCCCTCGATTCCCAAGGAA-----------------GGTGGCAAACATC-----------CC-----------------------------------------------------AAGGAGCTGCCTTCCATCACATCGAATG-C---AG---AAGC-------TGCTGCCG----------AGGCGGCG----------GCC--
droEug1 scf7180000409277:874588-874846 + TCGGTGGACGAGCAC------------CACA-------------ACGGC-AGCGGG-A----------------------CAGG----------------A------GGGG------CAGCCGGTGGAG---------C---------CGATCACCACAACA---CCACCGAGCACCATGCCCAGCAGCCGCCAA---GCCA---------------------------------TCC-ACAGCA-GCAGCACCCG---C---------ACCACCAG------------CAGC--------------------CGCAGCACCACCTGCAGC---------------AGCAG---------------------------------------------------------------CATCACCCGCACCA------------------CCAGC---AGG---CGGTGGCCC----------------------------------------------------------------------------------------------------------------------CTC---TC-------------------------------------------------CCACTGGCCCACCA------------------------TCAGAACGGGGATGCCCAGAGC------------------CA--------CGCCCACGCTA----ACG------------------CAGCCGCCGCCG----CTC--
dm3 chrX:12608991-12609216 - AGCAGCAGCAAC---------------A----------------GGACC-A---AC-GCA-C--------------CAACCTGC----------------A------TCTG-------------------CAAATCCAT---------C-------------------------------------A---------CC------------ACCA------------C-------------C----AACAGCAGCAG---------CAG---CAGCAGC---------AGCA--GCAGCAAC------------AACAACAGCAA------CAGCAG---------CAACAG---------------------------------------------------------------CAGCAGCAGCAAAAACAGCAGCA---------A---------------------------------------------------------CATCATATGCAGCAGCAGCAGCAGCA-------------ACAAC---------------------------------------CTT---TGTCACCACCTCACCCAC------------------CCGG------------------------------------------------------------------CAGCA--------------------------GCAGCAACAGTAGTA--GTG---------------CAGCAGC------------GGC--
droSim2 3r:8497831-8498067 + CC--ACCGCC-----------------------------------CCGC-A---CCCGCA-T--------------CCGCATCC-------C-------------------CAGGCGC--------------ATCCCTC---------C---CTGCCC---------GTCAT---------------------GCAGC---------------------------------AGCACCA-CCTGC----AGCAGCAG---C---------AACAGCAG------------CAGC--------------------AGCAACAACAACAGCAGCAGCAG---------GAGCAG---------------------------------------------------------------CAGCATCTGCAGGAGCAGCAGCAGCATCTGCAGCAACTGCATC---AC----------------------------------------------------------------------------------------CATGCGCACCACCACC---TGCCTCAGCCTCTCC--------------ACACC--------------------------------------------------------------------ACCAGCCATCACCACAGCGCGC---------------------------------------------A--------------------TCC------CC-----------ACCTGC--
droSec2 scaffold_1:7680692-7680924 + CA--ACGGCCAG--CC-----------G----------------G----------CGGCA-T--------------CGGCGGCGCCGGACAGCGTCTCGCT------GCTG-------------------C---------------------GAGCGG-------GCGATGA---------------------CCAGC---------------------------------AGCAGCA-TCTCC----AGCAGCCA---C---------AA------------------CT--GCAGCAAC------------AGCAGCAGCAGCAGCAGC---------------AGCAG---------------------------------------------------------------CAGCACCTTCAACA------------------GCAAC---A-------------------------GCA--------------------ACGGCAC-CGCAGCAGCAGCAG---------------------------------------------------------------TC-------------------GACTATCGACGAGCGGCATC-------------------------TCCAAG---------------------------------------CAG-A--------------------------ACTCATCGGACAGCAGGAGC-G---GA---CT------GC-----------GCATCC--
droYak3 X:6906340-6906577 - AACAACAACACA--CCAAACGGTGCGCA----------------GCAGC-A---GCAGCA-G--------------CAA---------------------------------------------------CAACACCAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGCATCATCAGC---------------AGC-----------------------------------------------------------------------------------------AACGTGTTGTTGCCAGCAGCAACCAGCAACAACAG------------CAACAGCTGCAGCAGCAGCAGCA---------A---------------------------------------------------------CAACATCAGCAGCAGCAGCAGCAGCATGATAATGGACCAAC--------GT--CCCATCATT------------------------------------TGCATCAAT------------------CATC---------------------------TATCAGCATT-TC---------------------------------------------------------------TAATCAGCAAAATA-A---AG---C------GACGC------------AAC--
droEre2 scaffold_4820:7090288-7090525 - TACTACATAGCC---------------AACAATGCCGCAGCAGCTATACCG---CA-GC--------------------------------------------------ACCAAGCTC-------------------AT---------CAACCG------------CAA----------------CA---------GCAG---------CACCTGCACCAGCAGCCGCATCAGCACCA-ACATC----AGCAGCAT---C---------AGCAGCAG------------CATC--------------------AGCAGCAGCAGCATCAGCAGCAT---CAG---CAGCAG---------------------------------CAT---------------------CAG---CAGCAGCATCAGCAGCAGCATCA---------GCAACACCAGC---AA------------------------------------------------------CATCTGCACCAGC-------------------------------------------AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------CAGGCC--AACTTT----------------------CT------CC-----------ACATCC--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TACGACGGCCAC---------------C----------------ACGGC-C---ACGGCA-G--------------CGGCCTCC----------------A------CGGG-------------------CAATCCCTT---------CGGTCTGCTCAGCG---CCAACGA---------------------GCTGC---------------------------------AGGACCT-GCTGA----TGAAGCAG---C---------AACAGCAG------------CAAC--------------------AGCAACAGCTCCAGCAGC---------------AGCAG---------------------------------------------------------------CAGCAGCTGCAACT------------------GCAGC---AGG---CGGCTGCGGCCAAGGCAGCGGCG------------------------------------------------------------------------------------------A------CCACGCCCTC---GCCCAACAGTGCGCCCAA------------------CTTC------------------------------------------------------------------CAGGA--------------------------GCTGTTCCAACAGCAGATTG---------------CTGCCGCCA----------TCC--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................GC---------------------------------AGGACCT-GCTGA----TGAAGCAG---C---------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
......................................................................................................................................................................CAACGA---------------------GCTGC---------------------------------AGGACCT-GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.....CGGCCAC---------------C----------------ACGGC-C---ACGGCA-G--------------CGGCCTCC----------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGCGCCCAA------------------CTTC------------------------------------------------------------------CAGGA--------------------------...........................................................2111.0010100000000
.................................................................................................................................................................G---CCAACGA---------------------GCTGC---------------------------------AGGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCGCCCAA------------------CTTC------------------------------------------------------------------CAGGA--------------------------...........................................................2011.0010000100000
.........................................................................................................................................................................................................................................................................................................................AGCAACAGCTCCAGCAGC---------------AG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310100000000
...............................................................................................................................................................................................................................................................................................................................AGCTCCAGCAGC---------------AGCAG---------------------------------------------------------------CAGCA..................................................................................................................................................................................................................................................................................................................................................................................22110.0910100000000
...............................................................................................................................................................................................................................................................................CAGCAG------------CAAC--------------------AGCAACAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810100000000
..............................................................................................................................................................................................................................................................AG---C---------AACAGCAG------------CAAC--------------------AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
..............................................................................................................................................................................................................................................................................................................................CAGCTCCAGCAGC---------------AGCAG---------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010000
................................................................................................................................................................................................................................................................................AGCAG------------CAAC--------------------AGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510010000000
droPer2
TACGACGGCCAC---------------C----------------ACGGC-C---ACGGCA-G--------------CGGCCTCC----------------A------CGGG-------------------CAATCCCTT---------CGGTCTGCTCAGCG---CCAACGA---------------------GCTGC---------------------------------AGGACCT-GCTGA----TGAAGCAG---C---------AACAGCAG------------CAAC--------------------AGCAACAGCTCCAGCAGC---------------AGCAG---------------------------------------------------------------CAGCAGCTGCAACT------------------GCAGC---AGG---CGGCTGCGGCCAAGGCAGCGGCG------------------------------------------------------------------------------------------A------CCACGCCCTC---GCCCAACAGTGCGCCCAA------------------CTTC------------------------------------------------------------------CAGGA--------------------------GCTGTTCCAACAGCAGATTG---------------CTGCCGCCA----------TCC--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................CAACGA---------------------GCTGC---------------------------------AGGACCT-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
....................................................................................................................................ATCCCTT---------CGGTCTGCTCAGCG---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...................................................................................................................................................................................................................................................................C---------AACAGCAG------------CAAC--------------------AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droWil2
AGCAGCAGCAAC---------------A----------------ACAGC-A---ACAGCA-G--------------CAACAACA-------A-------------------CAGGCGC-------------------AG---------CAGCAGGCTCAGCA---CC-------------------------------------------ATCA------------C-------------C----AGCATCACCAA---------CAA---CAGCTGC---------AACA--ACAGCAAC---AGC------AACAACAGCA------GC---AG---------CAACAG------------CAGCAGCAG------------------------------------------CAGCAACAACAACA------------------ACAGC---A---------------------------------------------------------------GCAGCAGCAGCA-------------ACAACAACAGGCCCAA---CACCATCATCA-------------------------CCAGCATCACCAG------------------CAT-------------------------------------TC-A--------------------------CAGCA-------------------ACAG--C--AGCAACA---GC-------A---AG---C------GCCGC---------AAACGC--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................GCTCAGCA---CC-------------------------------------------ATCA------------C-------------C----AGCATCACCAA---------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCACCAG------------------CAT-------------------------------------TC-A--------------------------CAGC......................................................................................2111.00100001
...............................................................................CAACA-------A-------------------CAGGCGC-------------------AG---------CAGCAGGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GC-------A---AG---C------GCCGC---------AAACGC--1911.00100010
..........................................................................................................................................................................................................................................................CACCAA---------CAA---CAGCTGC---------AACA--ACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------ACAACAACAGGCCCAA---CACCATCA...........................................................................................................................................................................................................................2811.00101000
...........C---------------A----------------ACAGC-A---ACAGCA-G--------------CAACAACA-------A-------------------CAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
........................................................................................................................................................................................................................................................ATCACCAA---------CAA---CAGCTGC---------AACA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--C--AGCAACA---GC-------A---AG---C------GCCGC---------AAAC....2511.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------------CCAGCATCACCAG------------------CAT-------------------------------------TC-A--------------------------CAG.......................................................................................2411.00100010
...........................................................A-G--------------CAACAACA-------A-------------------CAGGCGC-------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.50100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCA-------------------------CCAGCATCACCAG------------------C...............................................................................................................................................................2220.50100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CACCATCATCA-------------------------CCAGCA.........................................................................................................................................................................................1920.50101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCA-------------------------CCAGCATCACCAG------------------C...............................................................................................................................................................1930.33100010
.........................................................................................................................................................................................................................................................................................................................................................CAACAG------------CAGCAGCAG------------------------------------------CAGCA..................................................................................................................................................................................................................................................................................................................................................................................20200.30600060
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACA------------------ACAGC---A---------------------------------------------------------------GCA............................................................................................................................................................................................................................................................................20200.20400040
......AGCAAC---------------A----------------ACAGC-A---ACAGCA-G--------------CAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15303000
.........................................................................................................................................................................................................................................................................................................................................GC---AG---------CAACAG------------CAGCAGCAG------------------------------------------CAGCA..................................................................................................................................................................................................................................................................................................................................................................................24200.15300030
...........................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------ACAGC---A---------------------------------------------------------------GCAGCAGCAGCA-------------AC....................................................................................................................................................................................................................................................21200.10200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------CAGCA-------------------ACAG--C--AGCAACA---GC-------A---A.................................22150.07100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACA------------------ACAGC---A---------------------------------------------------------------GCAGCAGCA......................................................................................................................................................................................................................................................................24200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................AG------------------------------------------CAGCAACAACAACA------------------ACAGC---A---------------------------------------------------------------G..............................................................................................................................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................................................................AACAGCA------GC---AG---------CAACAG------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100001
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACA------------------ACAGC---A---------------------------------------------------------------GCAGCA.........................................................................................................................................................................................................................................................................24200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------ACAGC---A---------------------------------------------------------------GCAGCAGCAGCA-------------......................................................................................................................................................................................................................................................21200.05100001
......................................................................................................................................................................................................................................................................................................CAGCAAC---AGC------AACAACAGCA------GC---AG---------CAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA-------------ACAACAACA.............................................................................................................................................................................................................................................21200.05101000
.................................................................................................................................................................................................................................................................................................CA--ACAGCAAC---AGC------AACAACAGCA------GC---AG---------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100100
.........................................................................................................................................................................................................................................................................................................CAAC---AGC------AACAACAGCA------GC---AG---------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
..........................................................................................................................................................................................................................................................................................................AAC---AGC------AACAACAGCA------GC---AG---------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA------------------ACAGC---A---------------------------------------------------------------GCAGCAGCAGCA-------------AC....................................................................................................................................................................................................................................................26200.05100010
................................................................................................................................................................................................................................................................................................................AGC------AACAACAGCA------GC---AG---------CAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.......................................................................................................................................................................................................................................................................................................AGCAAC---AGC------AACAACAGCA------GC---AG---------CAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..........................................................................................................................................................................................................................................................................................................AAC---AGC------AACAACAGCA------GC---AG---------CAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
droVir3
AGCAGCGACCAG---------------T----------------GCGGC-C-----GGC--------------------------------------------------GT-------------------CAATCCCTT---------TGGCCTGCTCAGCG---CCAACGA---------------------GCTGC---------------------------------AGGAGCT-GCTGC----TCAAGCAA---C---------AGCAGCAG------------CAGC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------GCAGCT------------------GCAGC---AAG---CGGCGGCTGTTAAAGCAGCAGC--------------------------------------TGCGGCT----------------------------------------------G------CCACGCCCAC---TGCGAATGGTACTACCAA------------------CTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTTCAGCAGCAAATAG---------------CCGCAGCCATTGCCGCAC-AGC--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTTCAGCA...............................................2111.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGTACTACCAA------------------CTTG------------------------------------------------------------------CAGGA--------------------------GCT........................................................2711.001000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------CTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTTC...................................................1911.001000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACCAA------------------CTTG------------------------------------------------------------------CAGGA--------------------------GCT........................................................2311.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................AACGA---------------------GCTGC---------------------------------AGGAGCT-GCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGCAGCAAATAG---------------CCGCA...................2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTACCAA------------------CTTG------------------------------------------------------------------CAGGA--------------------------GC.........................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................G---CCAACGA---------------------GCTGC---------------------------------AGGAGCT-GCTGC----.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAA------------------CTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTTCA..................................................2311.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................C----TCAAGCAA---C---------AGCAGCAG------------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AGCAACAGTT---------------------------------------------------------------------------------------------------GCAGCT------------------GCAGC---A..............................................................................................................................................................................................................................................................................................................................................22100.101001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................C---------AGCAGCAG------------CAGC--------------------AGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000000000002000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CAACAGTT---------------------------------------------------------------------------------------------------GCAGCT------------------GCAGC---...............................................................................................................................................................................................................................................................................................................................................19130.081001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CAAGCAA---C---------AGCAGCAG------------CAGC--------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23140.071000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AGCAGCAG------------CAGC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CAG------------CAGC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CAG------------CAGC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------GC.............................................................................................................................................................................................................................................................................................................................................................................19200.051010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................AGCAA---C---------AGCAGCAG------------CAGC--------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................GCAG------------CAGC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................AGCAGCAG------------CAGC--------------------AGCAACAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................GCAA---C---------AGCAGCAG------------CAGC--------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................C---------AGCAGCAG------------CAGC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000001000000000000000000000000000000
droMoj3
GACGACGGCGAC---------------A----------------ACGGC-G---ACGGCA-G--------------CAGCAGCC----------------A------GCGC-------------------GAATCCTTT---------CGGGCTG------------AACGA---------------------GCTGC---------------------------------AGGAGCT-ATTGC----TGAAGCAG---C---------AGCAGCAG------------CAAC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------GCAGCT------------------GCAGC---AGG---CGGCGGCTGTTAAGGCGGCTGC--------------------------------------TGCAGCGG-------------------------TGGCT---------------G------CCACGCCCACAGCTGCCAATGGGGCAGCCAA------------------TTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTCCAGCAGCAGATTG---------------CAGCAGCAATCGCCG----CAC--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................AGCC----------------A------GCGC-------------------GAATCCTTT---------CG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGG-------------------------TGGCT---------------G------CCACGCCCACA......................................................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCGGCTGC--------------------------------------TGCAGCGG-------------------------TGGCT---------------G------CC...............................................................................................................................................................................................................2711.001000010
..................................................................................................................................GAATCCTTT---------CGGGCTG------------AACGA---------------------GCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...................................................................................C----------------A------GCGC-------------------GAATCCTTT---------CGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................................................................C---------AGCAGCAG------------CAAC--------------------AGCAACAGTT---------------------------------------------------------------------------------------------------G..............................................................................................................................................................................................................................................................................................................................................................................24130.081100000
droGri2
AACAACGACGGC---------------CACA-------------ACGGC-A---ACAGCA-G--------------CAGCAGCA-------G-------------------CTGCT---------GGCAGCAATCCCTT---------TGGCCTGCTCAGCACCACCAATGA---------------------GTTGC---------------------------------AGGAGTT-GTTGC----TCAAGCAG---CAGCAACA------GC--------------------------------------------AGCTGCAGTCGC---------------AACAG---------------------------------------------------------------CAACAGTTGCAACTGCAGCAGCA---------ACAAC---AGG---CGGCGGCTGTCAAAGCAGCAGC--------------------------------------GGCA-------------------ACAACACAAGGC------------------------------------------------GCCACCAA------------------TTTG------------------------------------------------------------------CAGGA--------------------------GCTGTTTCAGCAACAGATTG---------------CTGCCGCCA------------T--SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------ACAAC---AGG---CGGCGGCTGTC..............................................................................................................................................................................................................................................................................................................................2211.00101
..........................................................................................................................................................................................................................................AGTT-GTTGC----TCAAGCAG---CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110
droAna3
TCCAGCCACAGC---------------C----------------ACAGC-C---ACAGCC-T--------------CAGCCGAT-------C------------CA-GGAA-------------------CCAGCCCTCCAGCCGCTG----CC--AG--TG----CAA----------------CA---------GCAGCA---------ACTGCACGAGCTCCAC----------------A----TGCAGCAG---CAGCAGCA------GCAGC-----------------------------------TTCAAATGCAA------GAGCAA---------CACGTGCAGCAGCTCCAGAGGCAGCAGGAGCTGGCCAGGCACGAGAAGCTGCAGCAGCAACAG------ATGCAGCGCTACTTGCAGCAGCT---------A---------------------------------------------------------CAGCTGCAGGAGCAGCTGCGGGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------------GCT------CC-----------ACATCC--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAG------ATGC...................................................................................................................................................................................................................................................................................................................................................................................1840.251010000
.................................................................................................................................................................................................................................AC----------------A----TGCAGCAG---CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171010000
........................................................................................................................................................................................................................................................TGCAGCAG---CAGCAGCA------GCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
......CACAGC---------------C----------------ACAGC-C---ACAGCC-........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
TGCAGCTGGCGC---------------A----------------GCAGC-A---ACAGCA-G--------------G---CT-----------------------------CTCCAG-------------CAACACCAC---------C---------AG-------------------------CACCTCCAACAGC---------------------------------AGCACCA-GCAGC----AACAGCAA---C---------AACAACAG------------CAGC--------------------AGCAACAACAACAGCAGC---------------AGCAG---------------------------------------------------------------CAGAAGCTGAAGCA------------------GTCGC---AGG---CGG------CA-----------------------------------------------AGTGCGGCGGC------------CAAC----------------------------------------------------AACAAGGCCACCAA--------------TCT-CACC------------------------------------------------------------------AAGGA--------------------------CTCGCCCAAGCAAAAGAGCA---------------GCGCCGCCG----------AGG--SizeHit CountTotal NormTotal
No Reads
droKik1
AGCAGCAGCAGC---------------A----------------ACAGC-A---ACAACA-C--------------CTGAATCT-------C-------------------CAGTTGC-------------------AC---------C-------------------------------------A---------GCAGCACCTGGGCCTTCA------------C-------------C----TGCAGCAGCAA---------CAG---CAGCTGC---------AACT--GCAACAACAACAGCAGCAACAGCACAATGTCCAGGCGC---AG---------CAACAG---------------------------------------------------------------CAGCAGATCCAAGTGCAGCAGCA---------A---------------------------------------------------------CAACAACAGCAGCAGCAGCAACAGCA-------------ACAAC------------------------------------A--CTC---GCCCTACAATG--CCAAT------------------CTGG------------------------------------------------------------------GAGGA--------------------------GGAG----------------------GCGGCATTGCTGG---AA----------TCCCTSizeHit CountTotal NormTotal
No Reads
droFic1
TGCAACAGCAAC---------------A----------------ACTGC-A---ACAGCA-G--------------CAGCAGCA-------A-------------------CTACTGC-------------------AA---------CAACAG------------CAA----------------CA---------ACTG---------CAACA------------------GCAGCA-GCAGC----AACAGCAG---C---------AACAGCACCAGCAGCAACAACT--GCAGCAGC------------AGCAACAGCAG------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCACCAGCA------------GC---A---------------------------------------------------------------ACTGCAGCAGCA-------------GCAACAGCAGCAGCAA---CAGCAGCAACA-------------------------ATTGCAACAGCAG------------------CAA-------------------------------------CC-C--------------------------TTGCA-------------------ACAG--C--AACAGCA----------------------------GCCAC---------AAGTGC--SizeHit CountTotal NormTotal
No Reads
droEle1
ACGGCCAGCACC-AT------------C----------------ACAGT-G---CG-GCAGCGGTGGCCGCCGCAGCGGCAGCC-----------------------------------------------------------------------------G---CCGTCCA---------------------TCAGC---------------------------------AACAGC-----------AGCAGGTG---CAG---CAGCAGCAGCAG------------CAGC--------------------AGCAACACCATCAGCAAC---------------AGCAG---------------------------------------------------------------CAGC---ACCAG---------------------CAGC---AGGTGGCTGCCGTTGCCATGGCGGCGATGGCCAATTTGTTGCCGCAGCAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATT--------------------------GCTGCTGCATCAGCAGAATC---------------TGCTCACC---------AATGC--SizeHit CountTotal NormTotal
No Reads
droRho1
AACAGCAGCAGC---------------A----------------GCAGC-A---ACAGCA-G--------------CAGCAACA-------G-------------------CAGC---------------A-----CAACAGCAGCAG----CC--AC--AG----C----A------G---------------CAGCAGCA---------------------------------ACT-GCAACT-GCAGCAGCAA---C---------AG------------------CA--------------------------------ACTGCAAC---AGCAACAGCAACTGCAG---------------------------------------------------------CAGCAACAGCAACTGCAGCA------------------GCAACAGCAAC---AC----------------------------------------------------------------------------------------CAGGAGCTCTACCGCC---AGCAGCAGCAACATCGCACTA---GC--ATG--------------------AGTGGCATA-------------------------GCCAGCCAGCAGCACT-----------------------------------------TGCAACAGATGGA-CG-C---AC---AGTACA--CCACA-----A----------TGCCACGT----------CCC--SizeHit CountTotal NormTotal
No Reads
droBia1
GTCGACGGCCAC---------------C----------------ATGACCA---AC-TCC-T--------------CGTCCTCG-------GCC------ACGCCCACTCC-------------------CGGG----T---------CG--------AC-------C------------------TCCTCCAACAAC---------------------------------AGTGCCACGCTCG----AGACGCTC---C---------ACCAGCAG------------CAGC--------------------AGCACCAGCACCAGCAGC---------------TGCAG---------------------------------------------------------------CAGCAACTGCAGCA------------------GTTGC---ACA---CGAATGCGGCCA-----------------------------------------------------------------------AC----------------------------------------------------------------AA------------------TTCGCGGCCCCCCTCGCGGGCGCCCTCCATC---------------------------------------CTGGA--------------------CAGTCC--GACCCTG--GCCAGAGTG---------------GAGCG--------------GGC--SizeHit CountTotal NormTotal
No Reads
droTak1
TGCCAAGGCAAC---------------C----------------ACAAC-C---ACGCAG-A--------------CATCGCCC----------------A------CGGA-------------------GGAGAAGGT---------GG---TGGTCAGTG---AA-----------G---------------TGAAGCCA---------------------------------TCG-GAAACT-GAAGGAGCAA---C---------AGCAGCAG------------CGGC--------------------AGCAACACCTCCACCACC---------------AGTAG---------------------------------------------------------------CAGCTCCTGC---C------------------CCACC---AGC---CACACCTGCCCAAGTGAATGGCA------------------------------------------------------------------------------------------ACAACAAT-GAGCCCTCGATTCCCAAGGAA-----------------GGTGGCAAACATC-----------CC-----------------------------------------------------AAGGAGCTGCCTTCCATCACATCGAATG-C---AG---AAGC-------TGCTGCCG----------AGGCGGCG----------GCC--SizeHit CountTotal NormTotal
No Reads
droEug1
TCGGTGGACGAGCAC------------CACA-------------ACGGC-AGCGGG-A----------------------CAGG----------------A------GGGG------CAGCCGGTGGAG---------C---------CGATCACCACAACA---CCACCGAGCACCATGCCCAGCAGCCGCCAA---GCCA---------------------------------TCC-ACAGCA-GCAGCACCCG---C---------ACCACCAG------------CAGC--------------------CGCAGCACCACCTGCAGC---------------AGCAG---------------------------------------------------------------CATCACCCGCACCA------------------CCAGC---AGG---CGGTGGCCC----------------------------------------------------------------------------------------------------------------------CTC---TC-------------------------------------------------CCACTGGCCCACCA------------------------TCAGAACGGGGATGCCCAGAGC------------------CA--------CGCCCACGCTA----ACG------------------CAGCCGCCGCCG----CTC--SizeHit CountTotal NormTotal
No Reads
dm3
AGCAGCAGCAAC---------------A----------------GGACC-A---AC-GCA-C--------------CAACCTGC----------------A------TCTG-------------------CAAATCCAT---------C-------------------------------------A---------CC------------ACCA------------C-------------C----AACAGCAGCAG---------CAG---CAGCAGC---------AGCA--GCAGCAAC------------AACAACAGCAA------CAGCAG---------CAACAG---------------------------------------------------------------CAGCAGCAGCAAAAACAGCAGCA---------A---------------------------------------------------------CATCATATGCAGCAGCAGCAGCAGCA-------------ACAAC---------------------------------------CTT---TGTCACCACCTCACCCAC------------------CCGG------------------------------------------------------------------CAGCA--------------------------GCAGCAACAGTAGTA--GTG---------------CAGCAGC------------GGC--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...................................................................................................................................................................................................................CCA------------C-------------C----AACAGCAGCAG---------CAG---CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................AACAACAGCAA------CAGCAG---------CAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................A------------C-------------C----AACAGCAGCAG---------CAG---CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CAGCAG---------CAG---CAGCAGC---------AGCA--GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AACAGCAGCAG---------CAG---CAGCAGC---------AGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GCAGCAG---------CAG---CAGCAGC---------AGCA--G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................C-------------C----AACAGCAGCAG---------CAG---CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GCAG---------CAACAG---------------------------------------------------------------CAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................CAGCAA------CAGCAG---------CAACAG---------------------------------------------------------------CAGCAGC................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................CA------------C-------------C----AACAGCAGCAG---------CAG---CAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AAC------------AACAACAGCAA------CAGCAG---------............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................AGC---------AGCA--GCAGCAAC------------AACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................AGCAA------CAGCAG---------CAACAG---------------------------------------------------------------CAGCAGC................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................ACCA------------C-------------C----AACAGCAGCAG---------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAAC------------AACAACAGCAA------CAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................C---------AGCA--GCAGCAAC------------AACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCA-------------AC....................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................GCAG---------CAG---CAGCAGC---------AGCA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................CAG---------CAG---CAGCAGC---------AGCA--GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................CAG---------CAACAG---------------------------------------------------------------CAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................ACAGCAGCAG---------CAG---CAGCAGC---------AGCA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCA-------------ACAAC---------------------------------------..........................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CAA------CAGCAG---------CAACAG---------------------------------------------------------------CAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................AACAGCAA------CAGCAG---------CAACAG---------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CC--ACCGCC-----------------------------------CCGC-A---CCCGCA-T--------------CCGCATCC-------C-------------------CAGGCGC--------------ATCCCTC---------C---CTGCCC---------GTCAT---------------------GCAGC---------------------------------AGCACCA-CCTGC----AGCAGCAG---C---------AACAGCAG------------CAGC--------------------AGCAACAACAACAGCAGCAGCAG---------GAGCAG---------------------------------------------------------------CAGCATCTGCAGGAGCAGCAGCAGCATCTGCAGCAACTGCATC---AC----------------------------------------------------------------------------------------CATGCGCACCACCACC---TGCCTCAGCCTCTCC--------------ACACC--------------------------------------------------------------------ACCAGCCATCACCACAGCGCGC---------------------------------------------A--------------------TCC------CC-----------ACCTGC--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAG---------GAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100010000000000000
.....................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG---------GAGCAG---------------------------------------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................18200.05110000000000000000
.................................................................................................................................................................................................................................................................................GCAG------------CAGC--------------------AGCAACAACAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
droSec2
CA--ACGGCCAG--CC-----------G----------------G----------CGGCA-T--------------CGGCGGCGCCGGACAGCGTCTCGCT------GCTG-------------------C---------------------GAGCGG-------GCGATGA---------------------CCAGC---------------------------------AGCAGCA-TCTCC----AGCAGCCA---C---------AA------------------CT--GCAGCAAC------------AGCAGCAGCAGCAGCAGC---------------AGCAG---------------------------------------------------------------CAGCACCTTCAACA------------------GCAAC---A-------------------------GCA--------------------ACGGCAC-CGCAGCAGCAGCAG---------------------------------------------------------------TC-------------------GACTATCGACGAGCGGCATC-------------------------TCCAAG---------------------------------------CAG-A--------------------------ACTCATCGGACAGCAGGAGC-G---GA---CT------GC-----------GCATCC--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAGCAGCAG---------------------------------------------------------------TC-------------------GA..................................................................................................................................................................................1820.5010001
........................................................................................................................................................................................................................................................................................................GCAAC------------AGCAGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
.....................................................................................................................................................................................................................................................................................................GCAGCAAC------------AGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
......................................................................................................................................................................................................................................................................................................CAGCAAC------------AGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001
droYak3
AACAACAACACA--CCAAACGGTGCGCA----------------GCAGC-A---GCAGCA-G--------------CAA---------------------------------------------------CAACACCAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGCATCATCAGC---------------AGC-----------------------------------------------------------------------------------------AACGTGTTGTTGCCAGCAGCAACCAGCAACAACAG------------CAACAGCTGCAGCAGCAGCAGCA---------A---------------------------------------------------------CAACATCAGCAGCAGCAGCAGCAGCATGATAATGGACCAAC--------GT--CCCATCATT------------------------------------TGCATCAAT------------------CATC---------------------------TATCAGCATT-TC---------------------------------------------------------------TAATCAGCAAAATA-A---AG---C------GACGC------------AAC--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................ATCATCAGC---------------AGC-----------------------------------------------------------------------------------------AACGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
.........................................................................................................................................................................................................................................................GCATCATCAGC---------------AGC-----------------------------------------------------------------------------------------AACGTGTTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGACCAAC--------GT--CCCATCATT------------------------------------TG.........................................................................................................................................................................................2411.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGATAATGGACCAAC--------GT--........................................................................................................................................................................................................................................1911.00100000010000
............................................................................CAA---------------------------------------------------CAACACCAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.........................................................................................................................................................................................................................................................GCATCATCAGC---------------AGC-----------------------------------------------------------------------------------------AACGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................................................................................................................................CAACACCAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT-TC---------------------------------------------------------------TAATCAGCAAAATA-A---AG---.............................2211.00101000000000
............................................................................................................................................................................................................................................................TCATCAGC---------------AGC-----------------------------------------------------------------------------------------AACGTGTTGTTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
......................TGCGCA----------------GCAGC-A---GCAGCA-G--------------CAA---------------------------------------------------CAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCATGATAATGGACC.......................................................................................................................................................................................................................................................2911.00100100000000
...................................................................................................................................AACACCAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGCATCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------------------------------------TGCATCAAT------------------CATC---------------------------TATCAGCATT-T.....................................................................................................................2711.00101000000000
......................................................................................................................................ACCAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGCATCATCAGC---------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
.........................................................................................................................................................................................................................................................GCATCATCAGC---------------AGC-----------------------------------------------------------------------------------------AACGTGTTGT............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCCAGCAGCAACCAGCAACAACAG------------CA.....................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGATAATGGACCAAC--------GT--........................................................................................................................................................................................................................................2011.00100000010000
...................................................................................................................................AACACCAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
.........................................................................................................................................................AGCA---------------------------------------------------------------------------GC--------------AGCATCATCAGC---------------AGC-----------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCATGATAAT............................................................................................................................................................................................................................................................1920.50101000000000
........................................................................................................................................CAT---------CAG-CAGCA---------------------------------------------------------------------------GC--------------AGCATCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.33100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------A---------------------------------------------------------CAACATCAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................2640.25101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------A---------------------------------------------------------CAACATCAGCAGCAGC.............................................................................................................................................................................................................................................................................19160.25401110100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---------A---------------------------------------------------------CAACATCAGCAGCA...............................................................................................................................................................................................................................................................................2560.17101000000000
.........................................................................................................................................................AGCA---------------------------------------------------------------------------GC--------------AGCATCATCAGC---------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.14100010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------A---------------------------------------------------------CAACATCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................2580.13101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---------A---------------------------------------------------------CAACATCAGCA..................................................................................................................................................................................................................................................................................2590.11101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------A---------------------------------------------------------CAACATCAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................22110.09100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------A---------------------------------------------------------CAACATCAGCAGCAGCA............................................................................................................................................................................................................................................................................19180.06101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------A---------------------------------------------------------CAACATCAGCAGCAG..............................................................................................................................................................................................................................................................................18200.05100000100000
droEre2
TACTACATAGCC---------------AACAATGCCGCAGCAGCTATACCG---CA-GC--------------------------------------------------ACCAAGCTC-------------------AT---------CAACCG------------CAA----------------CA---------GCAG---------CACCTGCACCAGCAGCCGCATCAGCACCA-ACATC----AGCAGCAT---C---------AGCAGCAG------------CATC--------------------AGCAGCAGCAGCATCAGCAGCAT---CAG---CAGCAG---------------------------------CAT---------------------CAG---CAGCAGCATCAGCAGCAGCATCA---------GCAACACCAGC---AA------------------------------------------------------CATCTGCACCAGC-------------------------------------------AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------CAGGCC--AACTTT----------------------CT------CC-----------ACATCC--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................CATC----AGCAGCAT---C---------AGCAGCAG------------CATC--------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2630.3311000000
....................................................................................................................................................................................................................................................................................................................................CATCAGCAGCAT---CAG---CAGCAG---------------------------------CAT---------------------CA...........................................................................................................................................................................................................................................................................................................................................................................................2630.3311000000
..................................................................................................................................................................................................................................................................................................................................AGCATCAGCAGCAT---CAG---CAGCAG---------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................2380.1310001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................19200.1021000010
........................................................................................................................................................................................................................................................AGCAGCAT---C---------AGCAGCAG------------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1021000010
................................................................................................................................................................................................................................................................................AGCAG------------CATC--------------------AGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1021000010
..........................................................................................................................................................................................................................................................................................................................................................AGCAG---------------------------------CAT---------------------CAG---CAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................19200.1021000010
....................................................................................................................................................................................................................................................................................................C--------------------AGCAGCAGCAGCATCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1022000000
........................................................................................................................................................................................................................................................................................................................................AGCAGCAT---CAG---CAGCAG---------------------------------CA...................................................................................................................................................................................................................................................................................................................................................................................................................19200.1021000010
........................................................................................................................................................................................................................................................AGCAGCAT---C---------AGCAGCAG------------CATC--------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.0911000000
........................................................................................................................................................................................................................................................................................................................................AGCAGCAT---CAG---CAGCAG---------------------------------CAT---------------------CAG---C......................................................................................................................................................................................................................................................................................................................................................................................24110.0911000000
..........................................................................................................................................................................................................................................................................................................................................................AGCAG---------------------------------CAT---------------------CAG---CAGCAGCATCAGC..........................................................................................................................................................................................................................................................................................................................................................................24110.0911000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCATCAGCAGCAGCATCA---------GC.....................................................................................................................................................................................................................................................................................................................................................24110.0911000000
..............................................................................................................................................................................................................................................................................................................................................AT---CAG---CAGCAG---------------------------------CAT---------------------CAG---CAGCA..................................................................................................................................................................................................................................................................................................................................................................................22120.0810000010
...............................................................................................................................................................................................................................................................................................................................AGCAGCATCAGCAGCAT---CAG---CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................24120.0810001000
.................................................................................................................................................................................................................................................................................................................................................................................................AT---------------------CAG---CAGCAGCATCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................22120.0810000010
..............................................................................................................................................................................................................................................................AT---C---------AGCAGCAG------------CATC--------------------AGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810000010
...............................................................................................................................................................................................................................................................................................................................AGCAGCATCAGCAGCAT---CAG---C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.0710001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAGCAGCAGCATCA---------.......................................................................................................................................................................................................................................................................................................................................................19190.0510000010
...........................................................................................................................................................................................................................................................AGCAT---C---------AGCAGCAG------------CATC--------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510000010
...........................................................................................................................................................................................................................................................................................................................................AGCAT---CAG---CAGCAG---------------------------------CAT---------------------CA...........................................................................................................................................................................................................................................................................................................................................................................................19190.0510000010
.............................................................................................................................................................................................................................................................................................................................................................AG---------------------------------CAT---------------------CAG---CAGCAGCATCA............................................................................................................................................................................................................................................................................................................................................................................19190.0510000010
..................................................................................................................................................................................................................................................................................CAG------------CATC--------------------AGCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100

Generated: 05/18/2015 at 12:25 AM