ID:

dps_1275

 Coordinate:

3:17270075-17270225 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.8 -34.5 -34.2

Flybase annnotation

exon [dpse_GLEANR_13794:1]; CDS [Dpse\GA12379-cds]; intron [Dpse\GA12379-in]

No Repeatable elements found

Sense Strand Reads

-----------------------------#####################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCATCGCAGACAGAGATTGTACTACGCAATGAAGAAGCTGTCACTAAATGTGAGTATCAATCGGGTTGACATATACATACGTATACATACGTGTATGTGTGTCCACACAGATGGGGGTAATGAAATGCACTTTTCAAGTTCAGAAAAACGGAATACTGCAATTCTGGGAACGGGGAACGGGGAATCGTGGGCAAGCGAGGGGACCGCGTGTCATGTTAATGAACTTGAAAAAAAAGACAACCGTTCGGGA
**************************************************(((.((.((((((..((.((((((((.(((((((....))))))).)))))))).))...)))........))).)).))).((((..((((.......((((((......))))))........))))..))))((((......))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
 V112
male body		 SRR902012
CNS imaginal disc
 GSM444067
head
........................................................................................................................................................................GAACGGGTAACGGGGAATA................................................................ 19 2 13 23.62 307 306 0 0 1 0 0
.........................................................................................................................................................................AACGGGGAACGGGGAATA................................................................ 18 1 8 17.75 142 138 0 0 2 0 2
........................................................................................................................................................................GAACGGGTAACGGGGAAT................................................................. 18 1 8 13.75 110 110 0 0 0 0 0
........................................................................................................................................................................CAACGGGGAACGGGGAAT................................................................. 18 1 7 9.57 67 63 0 0 2 0 2
.........................................................................................................................................................................AACGGGGAACGGGGAATC................................................................ 18 0 1 6.00 6 0 5 0 0 1 0
.........................................................................................................................................................................AACGGGTAACGGGGAATAG............................................................... 19 2 15 5.87 88 82 0 0 6 0 0
........................................................................................................................................................................CAACGGGGAACGGGGAATA................................................................ 19 2 19 2.37 45 39 0 1 3 0 2
.......................................................................................................................................................................GGAACGGGTAACGGGGAATC................................................................ 20 1 5 1.80 9 0 9 0 0 0 0
..........................................................................................................................................................................ACGGGTAACGGGGAATCG............................................................... 18 1 5 1.40 7 6 0 1 0 0 0
..................................................................TTGACATGTAAATACGTTTAC.................................................................................................................................................................... 21 3 5 1.20 6 6 0 0 0 0 0
..........................................................................................................................................................................ACGGGTAACGGGGAATCGTG............................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TCTAGGAACGGGTAACGGGGAATC................................................................ 24 2 1 1.00 1 1 0 0 0 0 0
....................................................................................................................................................................ATGGGAACGGGTAACGGGGAAT................................................................. 22 2 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................TGTGAACGGGTAACGGGGAAT................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................GCAACGGGGAACGGGGAATC................................................................ 20 1 5 1.00 5 2 3 0 0 0 0
....................................................................................................................................................................CTAAGAACGGGTAACGGGGAAT................................................................. 22 3 1 1.00 1 1 0 0 0 0 0
.....CGCAGAGAGATATGGTACTACG................................................................................................................................................................................................................................ 22 3 1 1.00 1 0 0 1 0 0 0
......................................................................................................................................................................GGGAACGGGTAACGGGGAAT................................................................. 20 1 3 0.67 2 2 0 0 0 0 0
.......................................................................................................................................................................GGAACGGGTAACGGGGAAT................................................................. 19 1 8 0.63 5 4 1 0 0 0 0
.......................................................................................................................................................................TGAACGGGTAACGGGGAAT................................................................. 19 2 10 0.60 6 6 0 0 0 0 0
........................................................................................................................................................................CAACGGGGAACGGGGAATC................................................................ 19 1 5 0.60 3 1 1 1 0 0 0
.....................................................................................................................................................................TGGTAACGGGTAACGGGGAAT................................................................. 21 2 5 0.60 3 2 1 0 0 0 0
.......................................................................................................................................................................AGAACGGGTAACGGGGAATA................................................................ 20 3 20 0.55 11 11 0 0 0 0 0
....................................................................................................................................................................CTAGGAACGGGTAACGGGGAATA................................................................ 23 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................TCCGTGAACGGGTAACGGGGAAT................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGGAACGGGGAAT................................................................. 17 0 2 0.50 1 0 0 0 0 1 0
......................................................................................................................................................................GTGAACGGGTAACGGGGAATA................................................................ 21 3 8 0.50 4 4 0 0 0 0 0
....................................................................................................................................................................CTGCTAACGGGTAACGGGGAAT................................................................. 22 3 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................AGAACGGGTAACGGGGAAT................................................................. 19 2 12 0.50 6 6 0 0 0 0 0
...................................................................................................................................................................TCCCGGAACGGGTAACGGGGAAT................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................TCTACGAACGGGTAACGGGGAA.................................................................. 22 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................TCAGGCAACGGGTAACGGGGAAT................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
.......................................................................................................................................................................GGAACGGGTAACGGGGAATA................................................................ 20 2 12 0.50 6 6 0 0 0 0 0
.....................................................................................................................................................................TGGGAAGGTGGAAAGGGGAATC................................................................ 22 3 5 0.40 2 2 0 0 0 0 0
.......................................................................................................................................................................TGAACGGGTAACGGGGAATA................................................................ 20 3 20 0.40 8 7 0 0 1 0 0
.......................................................................................................................................................................GCAACGGGGAACGGGGAAT................................................................. 19 1 6 0.33 2 0 0 2 0 0 0
...................................................................................................................................................................TCCGGGAACGGGTAACGGGGAATA................................................................ 24 3 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................................................GTAACGGGGAACGGGGAAT................................................................. 19 1 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGCAACGGGGAATC................................................................ 18 1 6 0.33 2 0 0 0 0 0 2
....................................................................................................................................................................CTGGTAACGGGTAACGGGGAATA................................................................ 23 3 3 0.33 1 1 0 0 0 0 0
...................................................................................................................................................................TCCGCGAACGGGTAACGGGGAAT................................................................. 23 3 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATTGT.............................................................. 20 2 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................................................GAGAACGGGTAACGGGGAAT................................................................. 20 2 7 0.29 2 2 0 0 0 0 0
..........................................................................................................................................................................ACGGGGAACGGGGAATCA............................................................... 18 1 7 0.29 2 0 0 1 0 0 1
.........................................................................................................................................................................AACGGGGAACGGGGAATCA............................................................... 19 1 7 0.29 2 1 1 0 0 0 0
.........................................................................................................................................................................................................................TTATGAACTTGAAAAAAAGAAC............ 22 3 7 0.29 2 2 0 0 0 0 0
......................................................................................................................................................................GAGAACGGGTAACGGGGAATA................................................................ 21 3 15 0.27 4 4 0 0 0 0 0
.........................................................................................................................................................................AACGGGGAACCGGGAATC................................................................ 18 1 4 0.25 1 0 0 1 0 0 0
..........................................................................................................................................................................ACGGGTAACGGGGAATCGA.............................................................. 19 2 8 0.25 2 2 0 0 0 0 0
.......................................................................................................................................................................CGAACGGGTAACGGGGAAT................................................................. 19 2 12 0.25 3 3 0 0 0 0 0
....................................................................................................................................................................CTGGCAACGGGTAACGGGGAATA................................................................ 23 3 8 0.25 2 2 0 0 0 0 0
......................................................................................................................................................................AGGAACGGGTAACGGGGAATA................................................................ 21 3 18 0.22 4 4 0 0 0 0 0
.......................................................................................................................................................................GGAACGGGGAACGGGGAATA................................................................ 20 1 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATCG............................................................... 19 1 5 0.20 1 1 0 0 0 0 0
........................................................................................................................................................................................ATTGTGGGCAAGCGAGGTG................................................ 19 2 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................................................GGTAACGGGTAACGGGGAATT................................................................ 21 3 20 0.20 4 4 0 0 0 0 0
......................................................................................................................................................................AGGAACGGGTAACGGGGAAT................................................................. 20 2 10 0.20 2 2 0 0 0 0 0
.....................................................................................................................................................................TGGTAACGGGTAACGGGGAATC................................................................ 22 2 5 0.20 1 0 1 0 0 0 0
.......................................................................................................................................................................TGAACGGGTAACGGGGAATC................................................................ 20 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................................................................GCAACGGGGAACGGGGAAGC................................................................ 20 2 5 0.20 1 0 0 1 0 0 0
...................................................................................................................................................................TCTAGCAACGGGTAACGGGGAAT................................................................. 23 3 5 0.20 1 1 0 0 0 0 0
........................................................................................................................................................................GAACGGGTAACGGGGAATC................................................................ 19 1 5 0.20 1 1 0 0 0 0 0
......................................................................................................................................................................GTAAACGGGTAACGGGGAAT................................................................. 20 3 16 0.19 3 3 0 0 0 0 0
.....................................................................................................................................................................CGAGAACGGGTAACGGGGAAT................................................................. 21 3 11 0.18 2 2 0 0 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATGGTC............................................................. 21 3 11 0.18 2 0 0 0 2 0 0
.....................................................................................................................................................................CGTGAACGGGTAACGGGGAAT................................................................. 21 3 6 0.17 1 1 0 0 0 0 0
........................................................................................................................................................................CAACGGGGAACGGGGTATC................................................................ 19 2 6 0.17 1 0 0 1 0 0 0
....................................................................................................................................................................CTGCAAACGGGTAACGGGGAAT................................................................. 22 3 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................................................GCAACGGGGAACGGGGTATCGGG............................................................. 23 3 6 0.17 1 0 0 1 0 0 0
..........................................................................................................................................................................ACGGGGAACGGGGAATCAGGGG........................................................... 22 2 6 0.17 1 1 0 0 0 0 0
........................................................................................................................................................................GAACGGGGAACGGGGAATA................................................................ 19 1 6 0.17 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATATTG............................................................. 21 3 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................................................GCAACGGGGAACGGGGAA.................................................................. 18 1 20 0.15 3 1 0 2 0 0 0
......................................................................................................................................................................GGGAACGGGTAACGGGGAATA................................................................ 21 2 7 0.14 1 1 0 0 0 0 0
....................................................................................................................................................................CTGCCAACGGGTAACGGGGAAT................................................................. 22 3 7 0.14 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGGTACGGGGAATA................................................................ 18 2 14 0.14 2 2 0 0 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATCGA.............................................................. 20 2 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................................................TACGAACGGGTAACGGGGAAT................................................................. 21 3 7 0.14 1 1 0 0 0 0 0
......................................................................................................................................................................GCGAACGGGTAACGGGGAAT................................................................. 20 2 7 0.14 1 1 0 0 0 0 0
.....................................................................................................................................................................CCGGAACGGGTAACGGGGAAT................................................................. 21 3 14 0.14 2 2 0 0 0 0 0
......................................................................................................................................................................GGGCACGGGTAACGGGGAATA................................................................ 21 3 15 0.13 2 2 0 0 0 0 0
......................................................................................................................................................................GGTAACGGGTAACGGGGAAT................................................................. 20 2 15 0.13 2 2 0 0 0 0 0
....................................................................................................................................................................CCGGGAACGGGTAACGGGGAATA................................................................ 23 3 8 0.13 1 1 0 0 0 0 0
........................................................................................................................................................................CAACGGGGAACGGGGACTC................................................................ 19 2 8 0.13 1 0 0 0 0 0 1
.........................................................................................................................................................................AACGGGTAACGGGGAATAGTA............................................................. 21 3 8 0.13 1 1 0 0 0 0 0
......................................................................................................................................................................AAGAACGGGTAACGGGGAAT................................................................. 20 3 18 0.11 2 2 0 0 0 0 0
..........................................................................................................................................................................ACGCGGAACGGGGAATCA............................................................... 18 2 10 0.10 1 0 0 1 0 0 0
......................................................................................................................................................................CAGAACGGGTAACGGGGAAT................................................................. 20 3 20 0.10 2 2 0 0 0 0 0
........................................................................................................................................................................GCACGGGTAACGGGGAATA................................................................ 19 3 20 0.10 2 2 0 0 0 0 0
...........................................................................................................................................................................CGGGTAACGGGGAATGGT.............................................................. 18 2 11 0.09 1 0 0 0 1 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATTG............................................................... 19 2 11 0.09 1 1 0 0 0 0 0
......................................................................................................................................................................CGGAACGGGTAACGGGGAATA................................................................ 21 3 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATATT.............................................................. 20 3 12 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATGGTT............................................................. 21 3 12 0.08 1 0 0 0 1 0 0
.......................................................................................................................................................................GCAACGGGGAACGGGGAATA................................................................ 20 2 13 0.08 1 1 0 0 0 0 0
................................................................................................................................................................................AGCGGGGAATCGGGGGCA......................................................... 18 2 13 0.08 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGAAACGGGGTATC................................................................ 18 2 14 0.07 1 0 0 1 0 0 0
.........................................................................................................................................................................AACGGGTAACGGGGAATACT.............................................................. 20 3 14 0.07 1 1 0 0 0 0 0
.....................................................................................................................................................................CGGAAACGGGTAACGGGGAAT................................................................. 21 3 14 0.07 1 1 0 0 0 0 0
.......................................................................................................................................................................TCAACGGGGAACGGGGAAT................................................................. 19 2 14 0.07 1 1 0 0 0 0 0
......................................................................................................................................................................CCGAACGGGTAACGGGGAAT................................................................. 20 3 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................GTACGGGTAACGGGGAAT................................................................. 18 2 15 0.07 1 1 0 0 0 0 0
........................................................................................................................................................................CAACGGGTAACGGGGAATGGT.............................................................. 21 3 17 0.06 1 0 0 0 1 0 0
........................................................................................................................................................................GCACGGGTAACGGGGAAT................................................................. 18 2 17 0.06 1 1 0 0 0 0 0
........................................................................................................................................................................GATCGGGTAACGGGGAATA................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................GAGCGGGTAACGGGGAATA................................................................ 19 3 20 0.05 1 1 0 0 0 0 0
........................................................AGCAATTGGGTTGAGATAT................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0
.......................................................................................................................................................................AGAACGGGAAACGGGGAATA................................................................ 20 3 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................CATCGGGGAACGCGGAATC................................................................ 19 3 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................................GGAAACGGGTAACGGGGAATA................................................................ 21 3 20 0.05 1 1 0 0 0 0 0
.........................................................................................................................................................................AACGGGAAACGGGGAATA................................................................ 18 2 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................................................TGGTAACGGGTAACGGGGA................................................................... 19 2 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TAGTAGCGTCTGTCTCTAACATGATGCGTTACTTCTTCGACAGTGATTTACACTCATAGTTAGCCCAACTGTATATGTATGCATATGTATGCACATACACACAGGTGTGTCTACCCCCATTACTTTACGTGAAAAGTTCAAGTCTTTTTGCCTTATGACGTTAAGACCCTTGCCCCTTGCCCCTTAGCACCCGTTCGCTCCCCTGGCGCACAGTACAATTACTTGAACTTTTTTTTCTGTTGGCAAGCCCT
**************************************************(((.((.((((((..((.((((((((.(((((((....))))))).)))))))).))...)))........))).)).))).((((..((((.......((((((......))))))........))))..))))((((......))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
........................................................................................................................................GTCAAGACTTTTTGCCTTA................................................................................................ 19 2 2 0.50 1 1
...............................................................................................................................................CTAATTGCCTTAAGACGTTAAG...................................................................................... 22 3 2 0.50 1 1
...................................................................................................................................................GTGCCTTAAGACGTTAAG...................................................................................... 18 2 9 0.33 3 3
.......................................................................................................................TTACGTTCTGTGAAAAGTTCA............................................................................................................... 21 3 6 0.33 2 2
....................................................................................................................................................TGCCTTAAGACGTTAAGT..................................................................................... 18 2 8 0.13 1 1
...................................................................................................................................................GTGCCTTAAGACGTTAAGT..................................................................................... 19 3 20 0.10 2 2

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:17270025-17270275 - dps_1275 AT--C-A--TCG-CAGACA------GAGATTGTACTACGCAATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCGGGT-----------------------------------------------------TG------------ACATATACATAC----------------------GT--ATAC--AT----ACGTGTATGTG----------------------------------TGTC--CA-----CACAGA---------------------------------------TGGG-G-GTA-ATGAAATGCACTT-TTCAAGTTCAGAAAAACGGAAT-----ACTGCAATTCTGGGAACGGGGAACGGGGAATC-----------------------------------GTG-G--------------GCA---AGC-----GAGGGGACCGC---------------------GT-----------GTCATGTTAATGAACTTGAAAAAA-----A--AGACAACCGTT-------CGGGA---------
droPer2 scaffold_31:519992-520250 + AT--C-A--TCG-CAGACA------GAGATTGTACTACGCAATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCGGGT-----------------------------------------------------TG------------ACATATACATACGTAT-----TAC----------GT--ATAC--AT----ACGTGTATGTG----------------------------------TGTC--CA-----CACAGA---------------------------------------TGGG-G-GTA-ATGAAATGCACTT-TTCAAGTTCAGAAAAACGGAAT-----ACTGCAATTCTGGGAACGGGGAACGGGGAATC-----------------------------------ATG-G--------------GCA---AGC-----GAGGGGACCGC---------------------GT-----------GTCATGTTAATGAACTTGAAAAAA-----A-AAGACAACCGTT-------CGGGA---------
droWil2 scf2_1100000004822:2996105-2996197 - GA--G-A----------------------------------------GAGCTAGTACAGTACAGAGATCTAATTAAATG--------ATTCTGATT----------------------------------CAG--AT-----------AT----------------ATATATAC------------------ACGAAT--ATAT--AT----ATATATATGTG----------------------------------TGTG--TA-----TATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12970:4015907-4016018 + TA-----------------------------------TGCTATGTGGTAGCTGTTGCC----------------ACAAATGGCCTGGAGTGTAATT----------------------------------T--------G--AA---TTTTG----------GTATATGACAAT----------------------GT--ATGT--GT----GTCTGTATGTG----------------------------------TATG--CG-----CACAGT---------------------------------------TAAT-T-GCA-ATAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:10204668-10204824 - AT--A----------------------------------------------------T----------------ATATATACATA--------------------------------------------------------------------------------------------------------------------TAC--AT----ATGTACATATG--TAT--------------------------------A--TA-----CATC---------------------------------------------------------CTTC-ATT-TTCAAGTTCAGCGAGTTG-----------------CCC--A--AGTCA------------------AATA--ATG--GAAACAAGA---------------------G----------------------AAGTCCATTGAAGACTCTCCAATCGATCTTTGCTCTCGTTCGCCCATGTTAATGAACTTGAAAAA-----------------------------------------
droGri2 scaffold_15245:14740871-14741057 - AA--C-A-----GCAA--A------CAAAACGA---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATTCCAA---TATTCCGAGGGGAGGTTAATTTGAACAAGATGCCG--TTCCAAGAA---CTCCAGCATCTTAAAATATATACATAT----------------------G-CAGTAT--ATACAGAAATACATGTG--TAT-----------------------------------------------------------------------------------------------AT-GAGAAATGCACTT-TTCAAGTTCAGAG--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:15983519-15983813 + ATAAC-ACATCG-CA---A------CAAATTGG---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--AGATACATA---T------------------------TCC-ATATCC-TATACTATA-TA---TA------ATTCAGAC-----------------AT---TCGACGAACCGAAC--CATATTGTCTTCC-----AACAAAGGGCTCTGTC-ATCCGAAA--GGGGGCGTGTCAA-----CGG--GGCGGCGGGAACTGCACTTTTTCAAGTTCAGGA--ACGGATC-------------TGG--GAGTGGGG-----------------GAA----G----------------TGATGCTC--------------CGGGT---GCT-----GATGGGACC-----------------------GT-----------GACATGTTAATGAACTTGAAAAGA-----GT-----C-T----CGATCTC--------------
droBip1 scf7180000396567:470718-470989 + TC--A----------GAT-------C--AG-------AATTATGAAGAAGCTGTCACA----------------AAATGTGAGTATCAATCTGGTT----------------------------------GGGGGCTATA----------------------CCATTACCATTCT--------------ATA-TATA-CCAT----ATACAGAT-------------------------ATA---CGAACCATA--TTGTCTCCC-----AACAAAGGGCTCTGTC-ATCCGA-A--GGGGGCGTGTCA-----------------ACGGACTGCACTTTTTCAAGTTCAGGA--ACGGAAC-------------TGG--GAGTAGGG-------GATG-------------CTGGG--------------A--------------------TGGT---GCT-----GATGGGACC-----------------------GT-----------GACATGTTAATGAACTTGAAAAGA-----GT-----C-TGGCTCGATC----TGGCTCCTCCAC
droKik1 scf7180000302277:739893-740131 - GA--C-A-----AC----A------CAAATCGT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTAAGTACTAATCTCT---GT------------------------------CCAG--CCACAAGAACTGTTG------------ACATCAACACCCTG---TCC-TCCAC-AC---ATA-CAATAC--AT------------------ATAGTAT---TTAATG---CAAACAACATGTTGTC--CC-----AACAAAGGGCCGTC-----------------------------------------------GTGCACTTTTTCAAGTTCAGGA--ACGGAA-------------TCCC--A--AAGGG----------------------------------------------------------------------------------GGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T--CTCGATC----------------
droFic1 scf7180000453342:285064-285332 + GC----------------------------------TCGTCATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCACAAGAA---TTG------------ACATCAACACTCT--------------ATA------T-------AT------------------ACAGTGC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCC---CCCAAAA--GGGGGCGTGGCGC-------GG-CGTGG-GGGAAGTGCACTT-TTCAAGTTCAGGA--ACGGCAC-------------TCG--G--AGGGG------------------GA----A----------TCCGAAT------C----------CGAATCGGT---TCT-----GACGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T----CGATCGCCGCGG---------
droEle1 scf7180000491214:4562268-4562554 - GC--A-A------CAGACA------CAAATCGT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCATAAGAA---TTG------------CCATCAACACTCT--------------ATA------T-------AT------------------ATCGTAC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCT---TTCGAAT--GGGGGCGTGGCTC---GATGG--GGGAG-GGGAAGTGCACTT-TTCAAGTTCAGGA--AAGGCAT-------------GGA--G--AGGGGAAGGG--------------------------------GGAAT-----------------GGAATCGCT---GCT-----GATGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T----CGATCGCTGCGG---------
droRho1 scf7180000776849:123099-123384 + AA--C-A--------GACA------CAAATCGT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCATAAGAA---TTG------------ACATCAACACTCT--------------GTA------T-------AT------------------ATAGTAC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCT---TTCGAAATGGGGGGCGTGGT--------------CTG-GGGGACTGCACTT-TTCAAGTTCAGGA--ACGGAAT-------------CGA--G--AGGGG------------------GTGTGTGTG--GGGGGATGGGAAT-----------------GGAATCGCT---GCT-----GATGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T----CGATCGCT-------------
droBia1 scf7180000301754:3476812-3477093 - GC--C-G--TCGGCAGA---------AAAGCAC---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCCCAAGAA---CTG------------ACACCAACACTCTCCC-----TCCGC-AT---------------ATATG-----------G--CATAGTAG---CT---------------CTGTGGTC--CC-----AACAAAGGGCCCTCC---TCCGAG--------------------------GGCGG-GGGAAGTCCACTT-TTCAAGTTCAGGA--ACGGAG-------------TTCC--G--AGGG---------ATGGTGGGGGA-AA--ATGGT--------------GGGGCTTGGGCTGCAGTGAATCGCT---GCAGATGCGGTGGGACC-----------------------AT-----------GTCATGTTAATGAACTTGAAAAGA-----AA---------------------------------
droTak1 scf7180000414175:92808-93080 - AG--C-A-----ACAGA---------AAAGCAT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CC---------------------------ATCAACACTCC--------------ATA------T-------G------------------TATAGTACCTCTTGATA---CGAACAACATGTTGTC--CC-----AACAAAGGGCCTTCC---TTTAAAA-GGGGGGCGTGGCTC-------G-----GG-GGGAAGTTCACTT-TTCAAGTTCAGGA--A------------------TTCC--A--AAGGG-----------GCGGGGGA-AA--ATGGT--------------ATGGTGTG--------------GTA---TAA-----GATGCGACC-----------------------AT-----------GTCATGTTAATGAACTTGAAAAGAAAAGACGAAGATCATGA-----------------------
droEug1 scf7180000409464:798064-798326 + CC----------------------------------TCGCCATGAAGAAGCTGTCAGT----------------AGACGTGAGTATCAATCTGGTC----------------------------------GGG--CCATAAGAA---TTG------------ACATCAACACCCT--------------GCA------T-------AT------------------ACAGTAC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCCTCTCT---CCGAA--GGGGGCGTGGC-------------GCGG-GGGAAGTGCACTT-TTCAAGTTCAGAA--ACGGAA-------------TTCC--A--AGGGG------------------GACA--ATG--GAGGGCGGGGAGC-----------------GGAGTCGCT---GCT-----GACGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CGAAGA-----------------------------
dm3 chr2R:20433175-20433471 + TC--A----------C--A----TCC--AGCTC---CAGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCACTCGCATA---T---------ATGTA-T-GTGTGTAC------ATATATGTGTGTATAGTAC---TTGAGG---CAAACAACGTGTTGTC--CCAACCAAACAAAGGGCCTCCTGC---CCG-G--GGGGGAGTGGCTG-------GGAGGCGG-GAGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAC-----A---GAATTCC--G--AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATGA-----------------------
droSim2 2r:20913301-20913599 + dsi_9011 CT--CCA--------GCTTCAGATCC--AGCTC---CAGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCACTCGCATA---T---------ACGTA-C-ATAC--------------ATATG--TATAGTAC---TTGATG---CAAACAACATGTTGTC--CCAACCCAACAAAGGGCCTCCTGC---CCG----GGGGGCGTGGCTGGGGGCTGG--GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAC-----A---GAATTCC--G--AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATGA-----------------------
droSec2 scaffold_23:307253-307520 + --------------------------------------GCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCACTCGCATA---T---------ATGTA-C-ATAC--------------ATATG--TATAGTAC---TTGATG---CAAACAACATGTTGTC--CCAACCCAACAAAGGGCCTCCTGC---CC-----GGGGGCGTGGCT-------GG--GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAC-----A---GAATTCC--G--AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATGA-----------------------
droYak3 2R:20402395-20402710 + CC--C-A-----GCAGA---------AAGGCTT---CAGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTCGGT------------------------------CGCG--CCACAAGAA---TTG------------ACATCACCACTCGTATA---C---------GCGTA-C-ATGCATATATA---GTATAAATGTATATAGTAC---TTGATG---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCTGC---CCA----GGGGGCGTGGCCGTGGGCTGGG-GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAGAGAACA---GAATTCC--G--AGGGG------------------AA----G---------------------------------------TGCTGGTGAT-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATCA-----------------------
droEre2 scaffold_4845:21804925-21805192 + -----------------------------------------ATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGTTC----------------------------------GCG--CCACAAGAA---TTG------------ACATCACCACTCGCATA---C---------TCGAA-C-ATGCATAT------------------AAAGTAC---TTGATG---CAAACAACATGTTGTC--GC-----AACAAAGGGCCTCCTGC---CC------GGGGCGTGGCTG-------GG-GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAACAGAACG---GAATTCC--G--AGGGG------------------AA----A---------------------------------------T------GCT-----GCTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATCAGC-------CGGCC---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AT--C-A--TCG-CAGACA------GAGATTGTACTACGCAATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCGGGT-----------------------------------------------------TG------------ACATATACATAC----------------------GT--ATAC--AT----ACGTGTATGTG----------------------------------TGTC--CA-----CACAGA---------------------------------------TGGG-G-GTA-ATGAAATGCACTT-TTCAAGTTCAGAAAAACGGAAT-----ACTGCAATTCTGGGAACGGGGAACGGGGAATC-----------------------------------GTG-G--------------GCA---AGC-----GAGGGGACCGC---------------------GT-----------GTCATGTTAATGAACTTGAAAAAA-----A--AGACAACCGTT-------CGGGA---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATA-----------------------------------..............................................................................................................................................18817.75142013800022000
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATC-----------------------------------..............................................................................................................................................1816.0060050000001
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAAT..................................................................................................................................................................................1720.5010000000001
..............................................................................................................................................................................................................................................................................................................................................................................................ACGGGGAACGGGGAATC-----------------------------------A.............................................................................................................................................1870.2920000110000
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATC-----------------------------------A.............................................................................................................................................1970.2920110000000
...........................................................................................................................................................................................................................................................................................................................................................................................GGAACGGGGAACGGGGAATA-----------------------------------..............................................................................................................................................2050.2010100000000
............................................................................................................................................................................................................................................................................................................................................................................................GAACGGGGAACGGGGAATA-----------------------------------..............................................................................................................................................1960.1710100000000
droPer2
AT--C-A--TCG-CAGACA------GAGATTGTACTACGCAATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCGGGT-----------------------------------------------------TG------------ACATATACATACGTAT-----TAC----------GT--ATAC--AT----ACGTGTATGTG----------------------------------TGTC--CA-----CACAGA---------------------------------------TGGG-G-GTA-ATGAAATGCACTT-TTCAAGTTCAGAAAAACGGAAT-----ACTGCAATTCTGGGAACGGGGAACGGGGAATC-----------------------------------ATG-G--------------GCA---AGC-----GAGGGGACCGC---------------------GT-----------GTCATGTTAATGAACTTGAAAAAA-----A-AAGACAACCGTT-------CGGGA---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATC-----------------------------------..............................................................................................................................................18112.0012001191
..............................................................................................................................................................................................................................................................................................................................................................................................ACGGGGAACGGGGAATC-----------------------------------A.............................................................................................................................................1813.003001020
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATC-----------------------------------A.............................................................................................................................................1912.002000011
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATC-----------------------------------ACC-..........................................................................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATT-----------------------------------..............................................................................................................................................1840.753000030
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATC-----------------------------------GC............................................................................................................................................2070.141001000
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATC-----------------------------------CCT-..........................................................................................................................................2180.131000010
.............................................................................................................................................................................................................................................................................................................................................................................................AACGGGGAACGGGGAATG-----------------------------------..............................................................................................................................................18200.102000020
..............................................................................................................................................................................................................................................................................................................................................................................................ACGGGGAACGGGGAATC-----------------------------------AG............................................................................................................................................19200.051000010
droWil2
GA--G-A----------------------------------------GAGCTAGTACAGTACAGAGATCTAATTAAATG--------ATTCTGATT----------------------------------CAG--AT-----------AT----------------ATATATAC------------------ACGAAT--ATAT--AT----ATATATATGTG----------------------------------TGTG--TA-----TATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....G-A----------------------------------------GAGCTAGTACAGTACAGAGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
droVir3
TA-----------------------------------TGCTATGTGGTAGCTGTTGCC----------------ACAAATGGCCTGGAGTGTAATT----------------------------------T--------G--AA---TTTTG----------GTATATGACAAT----------------------GT--ATGT--GT----GTCTGTATGTG----------------------------------TATG--CG-----CACAGT---------------------------------------TAAT-T-GCA-ATAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AT--A----------------------------------------------------T----------------ATATATACATA--------------------------------------------------------------------------------------------------------------------TAC--AT----ATGTACATATG--TAT--------------------------------A--TA-----CATC---------------------------------------------------------CTTC-ATT-TTCAAGTTCAGCGAGTTG-----------------CCC--A--AGTCA------------------AATA--ATG--GAAACAAGA---------------------G----------------------AAGTCCATTGAAGACTCTCCAATCGATCTTTGCTCTCGTTCGCCCATGTTAATGAACTTGAAAAA-----------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................T-TTCAAGTTCAGCGAGTT...........................................................................................................................................................................................................................1811.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGATCTTTGCTCTCGTTC.................................................................2211.001100000
droGri2
AA--C-A-----GCAA--A------CAAAACGA---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATTCCAA---TATTCCGAGGGGAGGTTAATTTGAACAAGATGCCG--TTCCAAGAA---CTCCAGCATCTTAAAATATATACATAT----------------------G-CAGTAT--ATACAGAAATACATGTG--TAT-----------------------------------------------------------------------------------------------AT-GAGAAATGCACTT-TTCAAGTTCAGAG--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
ATAAC-ACATCG-CA---A------CAAATTGG---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--AGATACATA---T------------------------TCC-ATATCC-TATACTATA-TA---TA------ATTCAGAC-----------------AT---TCGACGAACCGAAC--CATATTGTCTTCC-----AACAAAGGGCTCTGTC-ATCCGAAA--GGGGGCGTGTCAA-----CGG--GGCGGCGGGAACTGCACTTTTTCAAGTTCAGGA--ACGGATC-------------TGG--GAGTGGGG-----------------GAA----G----------------TGATGCTC--------------CGGGT---GCT-----GATGGGACC-----------------------GT-----------GACATGTTAATGAACTTGAAAAGA-----GT-----C-T----CGATCTC--------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................ATTGG---TCGCTATGAAGAAGCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droBip1
TC--A----------GAT-------C--AG-------AATTATGAAGAAGCTGTCACA----------------AAATGTGAGTATCAATCTGGTT----------------------------------GGGGGCTATA----------------------CCATTACCATTCT--------------ATA-TATA-CCAT----ATACAGAT-------------------------ATA---CGAACCATA--TTGTCTCCC-----AACAAAGGGCTCTGTC-ATCCGA-A--GGGGGCGTGTCA-----------------ACGGACTGCACTTTTTCAAGTTCAGGA--ACGGAAC-------------TGG--GAGTAGGG-------GATG-------------CTGGG--------------A--------------------TGGT---GCT-----GATGGGACC-----------------------GT-----------GACATGTTAATGAACTTGAAAAGA-----GT-----C-TGGCTCGATC----TGGCTCCTCCACSizeHit CountTotal NormTotal
No Reads
droKik1
GA--C-A-----AC----A------CAAATCGT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTAAGTACTAATCTCT---GT------------------------------CCAG--CCACAAGAACTGTTG------------ACATCAACACCCTG---TCC-TCCAC-AC---ATA-CAATAC--AT------------------ATAGTAT---TTAATG---CAAACAACATGTTGTC--CC-----AACAAAGGGCCGTC-----------------------------------------------GTGCACTTTTTCAAGTTCAGGA--ACGGAA-------------TCCC--A--AAGGG----------------------------------------------------------------------------------GGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T--CTCGATC----------------SizeHit CountTotal NormTotal
No Reads
droFic1
GC----------------------------------TCGTCATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCACAAGAA---TTG------------ACATCAACACTCT--------------ATA------T-------AT------------------ACAGTGC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCC---CCCAAAA--GGGGGCGTGGCGC-------GG-CGTGG-GGGAAGTGCACTT-TTCAAGTTCAGGA--ACGGCAC-------------TCG--G--AGGGG------------------GA----A----------TCCGAAT------C----------CGAATCGGT---TCT-----GACGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T----CGATCGCCGCGG---------SizeHit CountTotal NormTotal
No Reads
droEle1
GC--A-A------CAGACA------CAAATCGT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCATAAGAA---TTG------------CCATCAACACTCT--------------ATA------T-------AT------------------ATCGTAC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCT---TTCGAAT--GGGGGCGTGGCTC---GATGG--GGGAG-GGGAAGTGCACTT-TTCAAGTTCAGGA--AAGGCAT-------------GGA--G--AGGGGAAGGG--------------------------------GGAAT-----------------GGAATCGCT---GCT-----GATGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T----CGATCGCTGCGG---------SizeHit CountTotal NormTotal
No Reads
droRho1
AA--C-A--------GACA------CAAATCGT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCATAAGAA---TTG------------ACATCAACACTCT--------------GTA------T-------AT------------------ATAGTAC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCT---TTCGAAATGGGGGGCGTGGT--------------CTG-GGGGACTGCACTT-TTCAAGTTCAGGA--ACGGAAT-------------CGA--G--AGGGG------------------GTGTGTGTG--GGGGGATGGGAAT-----------------GGAATCGCT---GCT-----GATGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CT-----C-T----CGATCGCT-------------SizeHit CountTotal NormTotal
No Reads
droBia1
GC--C-G--TCGGCAGA---------AAAGCAC---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CCCCAAGAA---CTG------------ACACCAACACTCTCCC-----TCCGC-AT---------------ATATG-----------G--CATAGTAG---CT---------------CTGTGGTC--CC-----AACAAAGGGCCCTCC---TCCGAG--------------------------GGCGG-GGGAAGTCCACTT-TTCAAGTTCAGGA--ACGGAG-------------TTCC--G--AGGG---------ATGGTGGGGGA-AA--ATGGT--------------GGGGCTTGGGCTGCAGTGAATCGCT---GCAGATGCGGTGGGACC-----------------------AT-----------GTCATGTTAATGAACTTGAAAAGA-----AA---------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AG--C-A-----ACAGA---------AAAGCAT---TCGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GGG--CC---------------------------ATCAACACTCC--------------ATA------T-------G------------------TATAGTACCTCTTGATA---CGAACAACATGTTGTC--CC-----AACAAAGGGCCTTCC---TTTAAAA-GGGGGGCGTGGCTC-------G-----GG-GGGAAGTTCACTT-TTCAAGTTCAGGA--A------------------TTCC--A--AAGGG-----------GCGGGGGA-AA--ATGGT--------------ATGGTGTG--------------GTA---TAA-----GATGCGACC-----------------------AT-----------GTCATGTTAATGAACTTGAAAAGAAAAGACGAAGATCATGA-----------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CC----------------------------------TCGCCATGAAGAAGCTGTCAGT----------------AGACGTGAGTATCAATCTGGTC----------------------------------GGG--CCATAAGAA---TTG------------ACATCAACACCCT--------------GCA------T-------AT------------------ACAGTAC---TTAATA---CAAACAACATGTTGTC--CC-----AACAAAGGGCCCTCTCT---CCGAA--GGGGGCGTGGC-------------GCGG-GGGAAGTGCACTT-TTCAAGTTCAGAA--ACGGAA-------------TTCC--A--AGGGG------------------GACA--ATG--GAGGGCGGGGAGC-----------------GGAGTCGCT---GCT-----GACGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CGAAGA-----------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TC--A----------C--A----TCC--AGCTC---CAGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCACTCGCATA---T---------ATGTA-T-GTGTGTAC------ATATATGTGTGTATAGTAC---TTGAGG---CAAACAACGTGTTGTC--CCAACCAAACAAAGGGCCTCCTGC---CCG-G--GGGGGAGTGGCTG-------GGAGGCGG-GAGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAC-----A---GAATTCC--G--AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATGA-----------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAG...............................................................................................................................................................................................................................................................21119.00190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001000000000000000000000000001200201010000000000000100000000000031000110000000110
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGA................................................................................................................................................................................................................................................................20117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000104310110110000010100
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GGAG...............................................................................................................................................................................................................................................................20110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000110200010001000000000000000000000111000000000000000
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GGA................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002002000010000000000
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GG.................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000000100000000000000000000000020000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GG.................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000100000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAGG..............................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAG.........................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................C---CCG-G--GGGGGAGTGGCTG-------GGAGGCAA-..........................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAGGC.............................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000010010000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACC-----------------------GT-----------GTCATGTTAATG....................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................C----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCAC....................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAT...............................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GGAGG..............................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GGAT...............................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000
..............................................................................................................................................................................................................................................................................................C---CCG-G--GGGGGAGTGGCTG-------GGAGG..............................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GGAGGC.............................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGG................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GGAGGCAA-..........................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................AAC-----A---GAATTCC--G--AGGGG------------------AA--------------------------------------------CG..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TGAGTATCAATCTGGTC----------------------------------GCG--C........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................................................................TGGTC----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCACTCGC................................................................................................................................................................................................................................................................................................................................................................................................................3411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAGGAAA-..........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................AGAAGCTGTCACT----------------AAATGTGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAGT..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................................................TGGCTG-------GGAGGCGG-GAGA......................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................GTTCAGCA--ACGGAAC-----A---GAATTCC--....................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................C---CCG-G--GGGGGAGTGGCTG-------GGAG...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................GGGGGAGTGGCTG-------GGAGGCGG-..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGG........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................AGCTGTCACT----------------AAATGTGAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................GGCTG-------GGAGGCGG-GAGAAGTG..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTTGAAAAGA-----CC.................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAGGCAA-..........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGATT..............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................G--AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGGGACC-----------------------.............................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGGT...............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
TC--A----------C--A----TCC--AGCTC---CAGCTATGAAGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAGATC............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................C---TTGAGG---CAAACAACGTGTTGT............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................................CTG-------GGAGGCGG-GAGAAGTGC.................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CG-G--GGGGGAGTGGCTG-------GGAGGCG............................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..................................................................................................................................GCG--CCTCAAGAA---TTG------------ACATCA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CTG-------GGAGGCGG-GAGAAGTGCA................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................................................................................................................................................................................................................................................ACAACGTGTTGTC--CCAACCA..................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................C---CCG-G--GGGGGAGTGGCTG-------GGAGGC.............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................................................................................................................AGTGGCTG-------GGAGGCGG-GAG.......................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CCG-G--GGGGGAGTGGCTG-------GGAGGCA............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................ATAGTAC---TTGAGG---CAAACA.....................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................G--GGGGGAGTGGCTG-------GGAGGCT............................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CT--CCA--------GCTTCAGATCC--AGCTC---CAGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCACTCGCATA---T---------ACGTA-C-ATAC--------------ATATG--TATAGTAC---TTGATG---CAAACAACATGTTGTC--CCAACCCAACAAAGGGCCTCCTGC---CCG----GGGGGCGTGGCTGGGGGCTGG--GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAC-----A---GAATTCC--G--AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATGA-----------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
--------------------------------------GCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTC----------------------------------GCG--CCTCAAGAA---TTG------------ACATCACCACTCGCATA---T---------ATGTA-C-ATAC--------------ATATG--TATAGTAC---TTGATG---CAAACAACATGTTGTC--CCAACCCAACAAAGGGCCTCCTGC---CC-----GGGGGCGTGGCT-------GG--GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAC-----A---GAATTCC--G--AGGGG------------------AA--------------------------------------------CGCT---GGC-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATGA-----------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CC--C-A-----GCAGA---------AAGGCTT---CAGCTATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGGTCGGT------------------------------CGCG--CCACAAGAA---TTG------------ACATCACCACTCGTATA---C---------GCGTA-C-ATGCATATATA---GTATAAATGTATATAGTAC---TTGATG---CAAACAACATGTTGTC--CC-----AACAAAGGGCCTTCTGC---CCA----GGGGGCGTGGCCGTGGGCTGGG-GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAAGAGAACA---GAATTCC--G--AGGGG------------------AA----G---------------------------------------TGCTGGTGAT-----GGTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATCA-----------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
-----------------------------------------ATGAAGAAGCTGTCACT----------------AAATGTGAGTATCAATCTGTTC----------------------------------GCG--CCACAAGAA---TTG------------ACATCACCACTCGCATA---C---------TCGAA-C-ATGCATAT------------------AAAGTAC---TTGATG---CAAACAACATGTTGTC--GC-----AACAAAGGGCCTCCTGC---CC------GGGGCGTGGCTG-------GG-GGCGG-GGGAAGTGCACTT-TTCAAGTTCAGCA--ACGGAACAGAACG---GAATTCC--G--AGGGG------------------AA----A---------------------------------------T------GCT-----GCTGGGACC-----------------------GT-----------GTCATGTTAATGAACTTGAAAAGA-----CCAAGATCATCAGC-------CGGCC---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:21 AM