ID:

dps_1259

 Coordinate:

3:16805854-16806004 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.4 -11.1 -10.8

Flybase annnotation

exon [dpse_GLEANR_16267:1]; CDS [Dpse\GA25064-cds]; intron [Dpse\GA25064-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
mature
  1. XL_group1e:3192116-3192136 +
  2. XL_group1e:6219739-6219759 +
  3. XL_group1e:11587599-11587619 -
  4. 4_group5:462825-462845 -
  5. 3:2427926-2427946 +
  6. 3:16756996-16757016 -
  7. dps_1259  3:16805865-16805885 +
  8. 2:18695066-18695086 +
  9. 2:18847519-18847539 +
  10. XR_group8:4938156-4938176 +
  11. 4_group3:4409892-4409912 -
  12. 4_group3:6066745-6066765 -
  13. 4_group4:983399-983419 -
  14. XR_group6:10174452-10174472 -
  15. XR_group6:10380408-10380428 -
  16. XR_group6:11348756-11348776 -
  17. XR_group6:13140594-13140614 +
star

Sense Strand Reads

--------##########################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACAAAAAGATGGATGTTAAAACGGTTGGTTCATTTTACTATGAAAACTTCGTAAGTACTCCAACAAACAACAACAACAACAACAAAAAATTACAACAACCAAAGCAAAAAAAAAACACCATAAAATATGTATATCCTGCATAAAATACGCAACTTTTGAATGCAAAAAAGAGCCTGACAAAAAATTGGAGAAAAAAAAGCTGAACGGAGAAAGGCTTTTCCTTCACAGCTTTTTGCGCCCTTTCGCTACCT
**************************************************.......((((((..............................................................((((((.....))))))......((..(((((........))))).))...........))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M059
embryo
 M040
female body
 M062
head
 GSM343916
embryo
...........................................AAACTTCGTAAGTACTCCAACAAAC....................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.CAAAAAGATTGATGTTACA....................................................................................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0
.................................................................................................................................................................................AAACAAATTGGAGAAAAAAAACC................................................... 23 3 13 0.15 2 0 2 0 0
.....................................................................................................................................................................................AAAGTGGAGAAAAAAAAG.................................................... 18 1 9 0.11 1 0 1 0 0
...........................................................................................ACAACGCTCAAAGCAAAAAAAA.......................................................................................................................................... 22 3 16 0.06 1 0 0 1 0
.............................................................AACAAACAACAACAACAACAA......................................................................................................................................................................... 21 0 17 0.06 1 0 0 0 1
..AAAAAGATTGATGTTACAGC..................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0
..............................................................ACAAACAACAACAACACCAACA....................................................................................................................................................................... 22 1 20 0.05 1 0 0 1 0
..........................................................................AACCACAACAAAGAATTAGAA............................................................................................................................................................ 21 3 20 0.05 1 0 1 0 0
...................................................................................................................................................................................AAAAATTGGAGATAAAAAAA.................................................... 20 2 20 0.05 1 0 1 0 0

Anti-sense strand reads

TGTTTTTCTACCTACAATTTTGCCAACCAAGTAAAATGATACTTTTGAAGCATTCATGAGGTTGTTTGTTGTTGTTGTTGTTGTTTTTTAATGTTGTTGGTTTCGTTTTTTTTTTGTGGTATTTTATACATATAGGACGTATTTTATGCGTTGAAAACTTACGTTTTTTCTCGGACTGTTTTTTAACCTCTTTTTTTTCGACTTGCCTCTTTCCGAAAAGGAAGTGTCGAAAAACGCGGGAAAGCGATGGA
**************************************************.......((((((..............................................................((((((.....))))))......((..(((((........))))).))...........))))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
.......................................................................................................................................................................................................GGCTTGACTCTTACCGAAA................................. 19 3 20 2.95 59 59 0 0
.......................................................................................................................................................................................................GGCTTGACTCTTGCCGAAA................................. 19 3 15 0.73 11 11 0 0
.GTTTTTCTAACTACAATGT....................................................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0
..............................................GAAGCATTCGGGAGGTCGT.......................................................................................................................................................................................... 19 3 11 0.09 1 1 0 0
......................................................................................................................................................................................................................GAAAAGGAAATGTCGGAAA.................. 19 2 11 0.09 1 1 0 0
......................................................................................................TGGTATTTTTCTTGTGGTATTT............................................................................................................................... 22 3 17 0.06 1 0 1 0
.........AGCTTCAAATTTGCCAACC............................................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:16805804-16806054 + dps_1259 ACAAA-----AA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACTCC-----AACAA----------------------------------------------------ACAACAA---C--------------------------------------------------------------------------------------------------------------------------------AACAA-----------CAACAAAAAATTACAACAACCAAAGC------A-----AAAAAAAA-------------------------------------------------------ACAC---CATAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATCCTGCATAAAATACGCAACTTTTGAATGCAAAAAAGAGCCTGACAAAAAATT----GGAGAAAAAAAAGCTGAACG----GAGAAAGGCTTTTCCTTCACAGCTTTTTGCGCCCTTTCGC---------------------------------------------------------------------------TACCT
droPer2 scaffold_33:930220-930399 - CAACAAACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAACTGC----------------------------------------------AACAA-------------------------------------------------------------------------------AG------GAAAGT-----------AAA-------------------------------------------------------------------------AAAAAC-AACAAAACAAACAAAAAAAAAACAAAACAAATTCAAAGAAAGATTTAACAACTCTGTGATAATTACTGTAAATTTATAAATTTAAACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA--------------------------A------------------------------------CAAG-----------------------------------------------------------------------------------------------------AAAAAACC----ACACAAAAAAATCTCTAACGGAATG--A----------------------------------------------------------------------------AAGG------------------------------------
droWil2 scf2_1100000004511:863329-863591 - GCATATT------AACG-CAT-----------TCTATAACTATA----------------------------AAC------------AACTTA----TAC---TAATA-------------------TCTAATTAGTAATAC----------A--------------------------------------------------------------------------------------------------------AAACAAAAAAGATAT---------------------------------------------------------------------------------------CTACTAAAAACTAAAAGAACAAAAACCAAAACTC---AAAAAAGAAAAACCAAAC-------------------CACTAAAACAC-----------------------CAA------------------------------------------------------------------------AAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA--CAAAATAA---AA---AA---AAAAA------AATACAAAAATTCACCCACAAATCGTGTAAAAGGTAAAAAGGCTTCGAACGCATT----------CAC---AAAT----ATA-------------------GTA------------------------------------------------------------------------------------------TAAAAACCTTTTAATTTGTGTTT-TTTTT
droVir3 scaffold_12970:11543509-11543699 + AACG------AA--TTG-GCT-----------GCTTTGA--TTT----------------------------GGTGCATTTG---------------CTCTTTGAAA---------------CACA-CTCCATTACAACCACAACAAC---A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------C-------------------------------------------------------------------AACAATAACAATCTACAATAACAATCAA--CTAC---T--------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTACAACTAACAGCATTGCA----------------------------------------------------------------------------------CGCACG------------------------------------------------------------------------------------------------------------------------------------CACGCTTCTTCTAAAAAAAAAAAAAAAAGACAGAAAACAGAAAACAAAA------------------------------------
droMoj3 scaffold_6473:7959734-7959952 - GCAA------CAAGG------------------CCAAGACGTAT----------------------------GGG------------TCACTTCTAGTCCCACCCGCG-------------------CCCAGCTAGTTCTTC----------G----------------------------------------------------------------------TGAAA-----------------------------------------------------------------AAAAGAAAAGTTCACAAAAAAAAGCGAATAAAACTTTTTTATTT----------------------GCATTTT-GTTTT-----------------------------------------------------------------------------------------------------AAGCGGCGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAAATTCAGCAGAGGAA-----------------------------------------------------------------------------------GAGGAAA----------------------------------------------------------------------------AAAAAAAAGC----ACATAG----------------ACC--A-ATGGTGTTTATTCCCATTTCTTTTCCTATTTTTCT---------------------------------------------------------------------------ACTTT
droGri2 scaffold_14792:326-511 + AATTACCAAAAA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACCTC----------CAAAAGATAGAAACAATCAATCGTAACATAC--------------------------------------AAAAAAAAAATGAACAACTATCCATCCAGTATTACAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------TATACTACATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA--------------------------G------------------------------------AAAGAAAAAA--AAAACACT------------------------------------------------------------------------------------------ATT----GCA-------------------AAA--G----------------------------------------------------------------------------AAAA------------------------------------
droAna3 scaffold_13248:1388438-1388621 - TGAA------T---------------------------------------------------------------TGCTTTTT-------GTAT----TTAAAACAAAA-------------------CTACGAAACAACAAA----------AATAAAAATT---AAATTAATAATAAAGT--------------------------------------GAGAAAAAA-----------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------AAAAAGAA-------------------------------------------------------CCGC---CAAAAA---------------------------------------------------------------------------A-------------AAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACAAA-------------------AACAAGAA---------------------------------------------------------------AAAATGTTGCAACTGAGAG---CGTAA-------------------------------------------------CACAA--AAC----ATAGAA--GAAGGAAGAAGG--GAG--A----------------------------------------------------------------------------AGAG------------------------------------
droBip1 scf7180000396759:2757274-2757606 + ATAA------GAAAATC-GAT-----------A--AAAACTATA----------------------------TAT------------CGAGAT----ATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAC-----------------------------------------------------------------------------------CAGCCAAACTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------GAT--GATCGCCGCATGCAATCAAAAT---CAACCGAATTCGATCGATAAATTACAAAAATCGTGTCAATTGGATTGCTTTTTATGAATAACTTATAATTTACGCATACTATAAAATAATATAAACCATATAAACTTTGAGTTGCCTATAAAAAAATGCCTATTAAAAGCTACTTTGCACACACATGATGATCGGTGAACAAAAAAAATTCTATAAATTAT-------------------GCGAAGAA---------------------------------------------------------------AATATTTTGAA------------------------------------------------------------------------ACC----TTTTAG--GCTTATAG------ATG--T-ACTA--------------------TGTCCCATCCA---------------------------------------------------------------------------TGTCT
droKik1 scf7180000302476:2957012-2957176 - AAAA------AA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACTCC----------AAACTGAATGA------CAATCGCCACCTACAGTAGTCCGCCA------------ACTA---TAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------TTATATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------A------------------------------------TAAA--G----------ACTACTGCC------------TGAATA----------TCCATAACTTGCGATA---------------------------------------------------------------------AAT--A----------------------------------------------------------------------------CATA------------------------------------
droFic1 scf7180000453833:621788-621954 - ACAAATT------G-AAACG-------------CT--------------------------------------GT-------------GAAAT----TA----------------------------ACTCGTCAATACTCA--------------------------------------------------------------AAAGCAC----------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAAAAATAATAAAAGAAAAGCAAAAAATA---AAAGAAAAACTACGGAGG-------------------AACAAG----------------------------------------------TAAAGCAGAGTT-------------------------------------GTAAACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--------------------------G------------------------------------CAAA---------A---AGCACTGAA------------AACAAAAAA---------------------------------------------------------------ATA-------AAC----------------CGA--A----------------------------------------------------------------------------AAAA------------------------------------
droEle1 scf7180000491011:95009-95178 - AAAG------AG-AGGC-GAT-----------GCTAAAACTAGG----------------------------GAT------------TCAAAT----CGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGCAAAAACTGAAACTGAAAAATA---------------------------------------TCCAAAAGCAAAAAAAAATACC-----------GAA-------------------------------------------------AAATACCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCTAGAAAAAAAAACCA--------------------------------------AAACAAAAACAAAACAAAAAAA-----------------------------------------------------------------------------------CCGAA--------------------------------------------------------------------------------AGAAAAGCAAGTAAA-------------------GAA--G----------------------------------------------------------------------------TTGA------------------------------------
droRho1 scf7180000780084:56850-56986 - AAAA------AA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACTCC----------AAACTGAATGA------CAATCGCCACGTACAGTAGTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAGAAACCGATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATATATATATACA----------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----------------TAT--A----------------------------------------------------------------------------AAGT------------------------------------
droBia1 scf7180000302126:1450210-1450352 - CTTGATT----------------------------AAACTAATT----------------------------GAT------------TGAAAA----TAATTGGAAAA-------------------GCCTGGAAAAACTTA----------ACAAAAAATAA------AAATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAA---TTAAAAAAAAAATAACAATGAAAATTTAAC-------------------------------------ACTTCATAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAG-----------------------------------------------------------------------------------------------------AAAAACTT----TAAAAA----------------ATA--T----------------------------------------------------------------------------AAAA------------------------------------
droTak1 scf7180000415659:53030-53154 + CAAA------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA---C--------------------------------------------------------------------------------------------------------------------------------AACAG-----------CAAGAGAAAACCAC-----------------------------------------------------------------------------------------------------------------------------------------------------AATTTTGTAGGCGTAAGCAACAAAAAC-------------AAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGAAATCACTTAAATGAAAA------ATGCAATTTGTT---------------------------------------------------------------------------------------------------ACCAGCAAAATGAGT-----------------TTA-------------------ACA--C----------------------------------------------------------------------------CAAA------------------------------------
droEug1 scf7180000409008:199688-199914 - TCAA------TA-TATA-TATATATAAAAACTGCATTAA--TTTATCAACCAAAAACAAAGAATCGTACTAAAGCGCTTTTG---------------GTGT---------------------------------------------------------------------------------------TTTTTTAAACATAAAC---ATAA----------------------------------------------------------------------------------------------------------------------------------------------------CCGCAAAAAAATATATAAAAAAAAGA------A-----AAACAAAA-------------------------------------------------------CCAC---AAGAAAAGAAAATTACAGTCAAGAAGAAAT-------------------------------------GCAACCAAAAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG--AAAAACAA---AA---AA-----------------------------------------------------------------------------------AGAAAT----ATAGAA--AAATAATAAAAA--AAA--A----------------------------------------------------------------------------GAAA------------------------------------
dm3 chr3L:8434572-8434785 - TTCA--------------------------------------------------------------------------------------TCA----TAATCTGAAAA-------------------AATAATAATAATATA-----AAAAA----------------------------------------------------ACAACAA---CAAATATGATAAAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TAA------------------------AAAAATCA-------------------------------------------------------CCAT---CGAAAA---------------------------------------------------------------------------C-------------GAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATAATACATACAAATATAAA------TCGCAAATAATTGAAAGTTACAGCAGAAAT-----------------------------------------------------------------------------------------------------AAAAAACA----ACAACAACATAGCTCAAAAG----G--A----------------------------------------------------------------------------AAAAGTCAAAGCAAAAACTTTTTAAGTTTTTTGGACTCTT
droSim2 x:7690396-7690522 + AACA------AAATGTT------------------A-----ATT----------------------------GTTGCATATCATTCTTCACAT----CAACATGAA------------------------------------------------------------------------------------------------------CAACTAC----------------------------------------------AACAA-------------------------------------------------------------------------------CA------ACA------------------------------------------------C------------------------------------CCATCAAAAAC-ATCAA---------------------------------------------------------------------------------CAACA----------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAA-------------------------------------------------------------------------------------------TTGCACTCGATGT---GGCCA-------------------------------------------------CACAAA-------------A----------------TTT--G----------------------------------------------------------------------------TACA------------------------------------
droSec2 scaffold_21:437315-437480 - AAAACTT------G-AA-TTTAAA--------------------------------------------------------------------------------------------------CAA--------------------------------------------------------------------------------AATCAAC-----------------------------------------------------------------------------------------------------------------------------------AACAACAAAAAAATAT-----------GAA-------------------------------------------------AAAAACCAAACAAAAGAACTTT-----------------------CCA------------------------------------------------------------------------ACAAAACCAACTATACATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATACAAAT---ATATATATATACATACATAAATATTTATC---------TT---------------AA---------A---GATACTACA------------ACTACAAAA---------------------------------------------------------------ATC----GTA-------------------AAA--A----------------------------------------------------------------------------AGAA------------------------------------
droYak3 3L:11290254-11290397 + ATTG--------------------------------------------------------------------------------------------------TGAGAAATTTGTAACCAAAACAAAAC----------------------------------------------------------------------------AAAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------CAAAAAAAAAAACCAACAAAAGCAAAAACATTTTGTGAAAAAAAAATCATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AAAAAAAATT----ACAAAA----------------ATA--A----------------------------------------------------------------------------AAGC------------------------------------
droEre2 scaffold_4784:5597933-5598075 + AACA------AA-AATA------------------------------------------------------------------------------------------------------------------ATAATAATATA-----AAAAT----------------------------------------------------ACAACAA---CAAATATGATATAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TAA---------------------------AAAAA-------------------------------------------------------CCAT---CGAAAA---------------------------------------------------------------------------C-------------GAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATAATACATACAAATATAAA------TCGCAAATAATTGAAAGTTACAGC-------------------------------------------------------------------------------------------------------------AGAAAT----ACATAA----------------AAA--A----------------------------------------------------------------------------AAAC------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACAAA-----AA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACTCC-----AACAA----------------------------------------------------ACAACAA---C--------------------------------------------------------------------------------------------------------------------------------AACAA-----------CAACAAAAAATTACAACAACCAAAGC------A-----AAAAAAAA-------------------------------------------------------ACAC---CATAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATCCTGCATAAAATACGCAACTTTTGAATGCAAAAAAGAGCCTGACAAAAAATT----GGAGAAAAAAAAGCTGAACG----GAGAAAGGCTTTTCCTTCACAGCTTTTTGCGCCCTTTCGC---------------------------------------------------------------------------TACCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................AAA-------------------CTTCGTAAGTACTCC-----AACAA----------------------------------------------------AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
...................................................................................................................................................AACAA----------------------------------------------------ACAACAA---C--------------------------------------------------------------------------------------------------------------------------------AACAA-----------CAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610000100000
droPer2
CAACAAACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAACTGC----------------------------------------------AACAA-------------------------------------------------------------------------------AG------GAAAGT-----------AAA-------------------------------------------------------------------------AAAAAC-AACAAAACAAACAAAAAAAAAACAAAACAAATTCAAAGAAAGATTTAACAACTCTGTGATAATTACTGTAAATTTATAAATTTAAACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA--------------------------A------------------------------------CAAG-----------------------------------------------------------------------------------------------------AAAAAACC----ACACAAAAAAATCTCTAACGGAATG--A----------------------------------------------------------------------------AAGG------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GCATATT------AACG-CAT-----------TCTATAACTATA----------------------------AAC------------AACTTA----TAC---TAATA-------------------TCTAATTAGTAATAC----------A--------------------------------------------------------------------------------------------------------AAACAAAAAAGATAT---------------------------------------------------------------------------------------CTACTAAAAACTAAAAGAACAAAAACCAAAACTC---AAAAAAGAAAAACCAAAC-------------------CACTAAAACAC-----------------------CAA------------------------------------------------------------------------AAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAA--CAAAATAA---AA---AA---AAAAA------AATACAAAAATTCACCCACAAATCGTGTAAAAGGTAAAAAGGCTTCGAACGCATT----------CAC---AAAT----ATA-------------------GTA------------------------------------------------------------------------------------------TAAAAACCTTTTAATTTGTGTTT-TTTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
AACG------AA--TTG-GCT-----------GCTTTGA--TTT----------------------------GGTGCATTTG---------------CTCTTTGAAA---------------CACA-CTCCATTACAACCACAACAAC---A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------C-------------------------------------------------------------------AACAATAACAATCTACAATAACAATCAA--CTAC---T--------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACTACAACTAACAGCATTGCA----------------------------------------------------------------------------------CGCACG------------------------------------------------------------------------------------------------------------------------------------CACGCTTCTTCTAAAAAAAAAAAAAAAAGACAGAAAACAGAAAACAAAA------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------C-------------------------------------------------------------------AACAATAACAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................ACCACAACAAC---A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------C-------------------------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CCACAACAAC---A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------C-------------------------------------------------------------------AACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................CCACAACAAC---A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------C-------------------------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CAACCACAACAAC---A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................ACCACAACAAC---A----------------------------------------------------ACAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------C-------------------------------------------------------------------AACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCAA------CAAGG------------------CCAAGACGTAT----------------------------GGG------------TCACTTCTAGTCCCACCCGCG-------------------CCCAGCTAGTTCTTC----------G----------------------------------------------------------------------TGAAA-----------------------------------------------------------------AAAAGAAAAGTTCACAAAAAAAAGCGAATAAAACTTTTTTATTT----------------------GCATTTT-GTTTT-----------------------------------------------------------------------------------------------------AAGCGGCGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAAATTCAGCAGAGGAA-----------------------------------------------------------------------------------GAGGAAA----------------------------------------------------------------------------AAAAAAAAGC----ACATAG----------------ACC--A-ATGGTGTTTATTCCCATTTCTTTTCCTATTTTTCT---------------------------------------------------------------------------ACTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AATTACCAAAAA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACCTC----------CAAAAGATAGAAACAATCAATCGTAACATAC--------------------------------------AAAAAAAAAATGAACAACTATCCATCCAGTATTACAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------TATACTACATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA--------------------------G------------------------------------AAAGAAAAAA--AAAACACT------------------------------------------------------------------------------------------ATT----GCA-------------------AAA--G----------------------------------------------------------------------------AAAA------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TGAA------T---------------------------------------------------------------TGCTTTTT-------GTAT----TTAAAACAAAA-------------------CTACGAAACAACAAA----------AATAAAAATT---AAATTAATAATAAAGT--------------------------------------GAGAAAAAA-----------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------AAAAAGAA-------------------------------------------------------CCGC---CAAAAA---------------------------------------------------------------------------A-------------AAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACAAA-------------------AACAAGAA---------------------------------------------------------------AAAATGTTGCAACTGAGAG---CGTAA-------------------------------------------------CACAA--AAC----ATAGAA--GAAGGAAGAAGG--GAG--A----------------------------------------------------------------------------AGAG------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................GAAAAAA-----------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------AAAAAGAA-------------------------------------------------------CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AAC----ATAGAA--GAAGGAAGAAGG--GAG--.....................................................................................................................2511.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAGAG---CGTAA-------------------------------------------------CACAA--AAC----................................................................................................................................................2111.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------------------------------------------------A-------------AAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACAAA-------------------AA...............................................................................................................................................................................................................................................................................................................2420.501010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAACAAA-------------------AACA.............................................................................................................................................................................................................................................................................................................2040.251010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAACAAA-------------------AACAAGAA---------------------------------------------------------------..........................................................................................................................................................................................................................................1950.201001000
..............................................................................................................................................................................................................................AAAAAA-----------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------AAAAAGAA-------------------------------------------------------CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.202020000
...............................................................................................................................................................................................................................AAAAA-----------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------AAAAAGAA-------------------------------------------------------CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.132020000
............................................................................................................................................................................................................................AGAAAAAA-----------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------AAAAAGAA-------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19170.061001000
..............................................................................................................................................................................................................................AAAAAA-----------------------------------------------------------------AAA-----------------------------------------------------------------------------------------------------AAAAAGAA-------------------------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------------------------------------------------------A-------------AAAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAAA........................................................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
ATAA------GAAAATC-GAT-----------A--AAAACTATA----------------------------TAT------------CGAGAT----ATGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAAC-----------------------------------------------------------------------------------CAGCCAAACTTTC-----------------------------------------------------------------------------------------------------------------------------------------------------GAT--GATCGCCGCATGCAATCAAAAT---CAACCGAATTCGATCGATAAATTACAAAAATCGTGTCAATTGGATTGCTTTTTATGAATAACTTATAATTTACGCATACTATAAAATAATATAAACCATATAAACTTTGAGTTGCCTATAAAAAAATGCCTATTAAAAGCTACTTTGCACACACATGATGATCGGTGAACAAAAAAAATTCTATAAATTAT-------------------GCGAAGAA---------------------------------------------------------------AATATTTTGAA------------------------------------------------------------------------ACC----TTTTAG--GCTTATAG------ATG--T-ACTA--------------------TGTCCCATCCA---------------------------------------------------------------------------TGTCTSizeHit CountTotal NormTotal
No Reads
droKik1
AAAA------AA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACTCC----------AAACTGAATGA------CAATCGCCACCTACAGTAGTCCGCCA------------ACTA---TAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------TTATATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACC--------------------------A------------------------------------TAAA--G----------ACTACTGCC------------TGAATA----------TCCATAACTTGCGATA---------------------------------------------------------------------AAT--A----------------------------------------------------------------------------CATA------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
ACAAATT------G-AAACG-------------CT--------------------------------------GT-------------GAAAT----TA----------------------------ACTCGTCAATACTCA--------------------------------------------------------------AAAGCAC----------------------------------------------------------------------------------------------------------------------------------------------------CAACAAAAAAATAATAAAAGAAAAGCAAAAAATA---AAAGAAAAACTACGGAGG-------------------AACAAG----------------------------------------------TAAAGCAGAGTT-------------------------------------GTAAACAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACG--------------------------G------------------------------------CAAA---------A---AGCACTGAA------------AACAAAAAA---------------------------------------------------------------ATA-------AAC----------------CGA--A----------------------------------------------------------------------------AAAA------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAAG------AG-AGGC-GAT-----------GCTAAAACTAGG----------------------------GAT------------TCAAAT----CGATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAGCAAAAACTGAAACTGAAAAATA---------------------------------------TCCAAAAGCAAAAAAAAATACC-----------GAA-------------------------------------------------AAATACCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATACCTAGAAAAAAAAACCA--------------------------------------AAACAAAAACAAAACAAAAAAA-----------------------------------------------------------------------------------CCGAA--------------------------------------------------------------------------------AGAAAAGCAAGTAAA-------------------GAA--G----------------------------------------------------------------------------TTGA------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAAA------AA-GATG-GAT-----------GTTAAAACGGTT----------------------------GGT------------TCATTT----TACTATGAAAA-------------------CTTCGTAAGTACTCC----------AAACTGAATGA------CAATCGCCACGTACAGTAGTCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATAGAAACCGATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATATATATATACA----------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----------------TAT--A----------------------------------------------------------------------------AAGT------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CTTGATT----------------------------AAACTAATT----------------------------GAT------------TGAAAA----TAATTGGAAAA-------------------GCCTGGAAAAACTTA----------ACAAAAAATAA------AAATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAA---TTAAAAAAAAAATAACAATGAAAATTTAAC-------------------------------------ACTTCATAAAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAG-----------------------------------------------------------------------------------------------------AAAAACTT----TAAAAA----------------ATA--T----------------------------------------------------------------------------AAAA------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAAA------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAA---C--------------------------------------------------------------------------------------------------------------------------------AACAG-----------CAAGAGAAAACCAC-----------------------------------------------------------------------------------------------------------------------------------------------------AATTTTGTAGGCGTAAGCAACAAAAAC-------------AAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATGAAATCACTTAAATGAAAA------ATGCAATTTGTT---------------------------------------------------------------------------------------------------ACCAGCAAAATGAGT-----------------TTA-------------------ACA--C----------------------------------------------------------------------------CAAA------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCAA------TA-TATA-TATATATAAAAACTGCATTAA--TTTATCAACCAAAAACAAAGAATCGTACTAAAGCGCTTTTG---------------GTGT---------------------------------------------------------------------------------------TTTTTTAAACATAAAC---ATAA----------------------------------------------------------------------------------------------------------------------------------------------------CCGCAAAAAAATATATAAAAAAAAGA------A-----AAACAAAA-------------------------------------------------------CCAC---AAGAAAAGAAAATTACAGTCAAGAAGAAAT-------------------------------------GCAACCAAAAAGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAG--AAAAACAA---AA---AA-----------------------------------------------------------------------------------AGAAAT----ATAGAA--AAATAATAAAAA--AAA--A----------------------------------------------------------------------------GAAA------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TTCA--------------------------------------------------------------------------------------TCA----TAATCTGAAAA-------------------AATAATAATAATATA-----AAAAA----------------------------------------------------ACAACAA---CAAATATGATAAAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TAA------------------------AAAAATCA-------------------------------------------------------CCAT---CGAAAA---------------------------------------------------------------------------C-------------GAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATAATACATACAAATATAAA------TCGCAAATAATTGAAAGTTACAGCAGAAAT-----------------------------------------------------------------------------------------------------AAAAAACA----ACAACAACATAGCTCAAAAG----G--A----------------------------------------------------------------------------AAAAGTCAAAGCAAAAACTTTTTAAGTTTTTTGGACTCTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACATAGCTCAAAAG----G--A----------------------------------------------------------------------------AAAAGTC.................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTTTTTAAGTTTTTTGGACT...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACATAGCTCAAAAG----G--A----------------------------------------------------------------------------AA......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACTTTTTAAGTTTTTTGGACT...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTCAAAAG----G--A----------------------------------------------------------------------------AAAAGTCAAAGCAAA.........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................CAAATATGATAAAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AAATATGATAAAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TAA------------------------AAAAATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----ACAACAACATAGCTCAAAAG----G--A----------------------------------------------------------------------------AA......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................A---CAAATATGATAAAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TAA------------------------AAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACATAGCTCAAAAG----G--A----------------------------------------------------------------------------AAAA....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGTTACAGCAGAAAT-----------------------------------------------------------------------------------------------------............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------GAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATAATACATACA.............................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TAAAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TAA------------------------AAAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACA------AAATGTT------------------A-----ATT----------------------------GTTGCATATCATTCTTCACAT----CAACATGAA------------------------------------------------------------------------------------------------------CAACTAC----------------------------------------------AACAA-------------------------------------------------------------------------------CA------ACA------------------------------------------------C------------------------------------CCATCAAAAAC-ATCAA---------------------------------------------------------------------------------CAACA----------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAA-------------------------------------------------------------------------------------------TTGCACTCGATGT---GGCCA-------------------------------------------------CACAAA-------------A----------------TTT--G----------------------------------------------------------------------------TACA------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-ATCAA---------------------------------------------------------------------------------CAACA----------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAA-------------------------------------------------------------------------------------------T...................................................................................................................................................................................................................................2221.00200002000000000000
droSec2
AAAACTT------G-AA-TTTAAA--------------------------------------------------------------------------------------------------CAA--------------------------------------------------------------------------------AATCAAC-----------------------------------------------------------------------------------------------------------------------------------AACAACAAAAAAATAT-----------GAA-------------------------------------------------AAAAACCAAACAAAAGAACTTT-----------------------CCA------------------------------------------------------------------------ACAAAACCAACTATACATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATACAAAT---ATATATATATACATACATAAATATTTATC---------TT---------------AA---------A---GATACTACA------------ACTACAAAA---------------------------------------------------------------ATC----GTA-------------------AAA--A----------------------------------------------------------------------------AGAA------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATTG--------------------------------------------------------------------------------------------------TGAGAAATTTGTAACCAAAACAAAAC----------------------------------------------------------------------------AAAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------CAAAAAAAAAAACCAACAAAAGCAAAAACATTTTGTGAAAAAAAAATCATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AAAAAAAATT----ACAAAA----------------ATA--A----------------------------------------------------------------------------AAGC------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
ATTG--------------------------------------------------------------------------------------------------TGAGAAATTTGTAACCAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--...............................................................................................................................................................................................................................................................2112.00200000020000
.......................................................................................................................AAACAAAAC----------------------------------------------------------------------------AAAACAA--------------------------------------------------------------------------------------------------------------------------------------CAA--------------CAAAAAAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------A...................................................................................................................................................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................AATCATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--...............................................................................................................................................................................................................................................................2511.00100000010000
.........................................................................................................GAAATTTGTAACCAAAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------C....................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AAA...........................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------..............................................................................................................................................................1911.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AA............................................................................................................................................................2811.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AAA...........................................................................................................................................................2611.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AA............................................................................................................................................................3011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AAAA..........................................................................................................................................................3011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AAAA..........................................................................................................................................................2311.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACA................................................................................................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGC...........................................................................................................................................................................................................................................2411.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAGGCA----------------------------------------------------------------------------AA............................................................................................................................................................2511.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................ACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------A...................................................................................................................................................................................................................................................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------AACAAAG.............................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATCATACCACACATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGA--------------------------G------------------------------------CAAA--A----------A...................................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAATT----ACAAAA----------------ATA--A----------------------------------------------------------------------------AAGA------------------------------------2230.33100100000000
droEre2
AACA------AA-AATA------------------------------------------------------------------------------------------------------------------ATAATAATATA-----AAAAT----------------------------------------------------ACAACAA---CAAATATGATATAA-----------------------------------------------------------------AAA--------------------------------------------------------------------------TAA---------------------------AAAAA-------------------------------------------------------CCAT---CGAAAA---------------------------------------------------------------------------C-------------GAATC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAATAATACATACAAATATAAA------TCGCAAATAATTGAAAGTTACAGC-------------------------------------------------------------------------------------------------------------AGAAAT----ACATAA----------------AAA--A----------------------------------------------------------------------------AAAC------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGAAAGTTACAGC-------------------------------------------------------------------------------------------------------------AGA.......................................................................................................................................................2111.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTGAAAGTTACAGC-------------------------------------------------------------------------------------------------------------AGAAA.....................................................................................................................................................2311.0010000100

Generated: 05/18/2015 at 12:21 AM