ID:

dps_1239

Coordinate:

3:16185307-16185457 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.8 -14.7 -14.6

Flybase annnotation

CDS [Dpse\GA25026-cds]; exon [dpse_GLEANR_16208:4]; intron [Dpse\GA25026-in]

No Repeatable elements found

mature
  1. dps_1239  3:16185439-16185457 +
  2. 4_group3:1937073-1937091 -
  3. XR_group6:4900923-4900941 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGACGAACTCGGACTTATGGCACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTTGCTGCCTCTATATCAAGCCAGAAGAAATGAGCTACGAACAAAACAAATGAAAAAGCAAAGCCTAGCATAGACACCGTTAGCCAATGAGTAAAGAAAAGAGAATCAAAAAAGACAGAGAGCACGACAACAGCAACAACAAGAACAACGAGAGCTTAAATTTCAAAAGAGAATCCACATTCAAGGTCACAACT
**************************************************((..(((.(((.(((((((......(((((.......)).))).....................((...))(((((.........)))))....(((...............)))........)))).)))))).))).))..........**************************************************
Read size # Mismatch Hit Count Total Norm Total M040
female body
M059
embryo
V112
male body
GSM343916
embryo
........................................................................................................................................................................................CAACAGCAACAACAAGAACAACGAG.......................................... 25 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................GACAACAGCAACAACAAGAACAACGAGA......................................... 28 0 1 1.00 1 1 0 0 0
.....................................................................................................AACCAATGAAGATGCAAAGCC................................................................................................................................. 21 3 9 0.67 6 4 0 2 0
..............................ACAGCAACGGGATCCACAAGA........................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0
...................GCACAGGATGCACAGCAACGG................................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0
.............CTTATGGCACAGGATGCACAGC........................................................................................................................................................................................................................ 22 0 2 0.50 1 0 0 0 1
......ACTCGGACTTATGGCACAGGATG.............................................................................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0
...CGAACTCGGACTTATGGCACAGGAT............................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
.............................CACAGCAACGGGATCCACAAGC........................................................................................................................................................................................................ 22 1 2 0.50 1 0 1 0 0
.......CTCGGACTTATGGCACAGG................................................................................................................................................................................................................................. 19 0 2 0.50 1 1 0 0 0
.....................AGAGGATGCACAGCAACGGGATC............................................................................................................................................................................................................... 23 1 2 0.50 1 0 1 0 0
..................................................GTGAGTTTTTGCTGCCTCTATT................................................................................................................................................................................... 22 1 2 0.50 1 1 0 0 0
.......CTCGGACTTATGGCACAGGATGCACAG......................................................................................................................................................................................................................... 27 0 2 0.50 1 0 0 1 0
.....................ACAGGATGCACAGCAACGGG.................................................................................................................................................................................................................. 20 0 2 0.50 1 1 0 0 0
GGACGAACTCGGACTTATGG....................................................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0
......................................................................................................................................................................................GACAACAGCAACAACAAGA.................................................. 19 0 3 0.33 1 0 1 0 0
..................................................................................................CAAAACCAATGAAGATGCAAAG................................................................................................................................... 22 3 5 0.20 1 1 0 0 0
...................................................TGTGTTTTTGCTGCCTTTAT.................................................................................................................................................................................... 20 2 5 0.20 1 0 0 0 1
.....................................................................................................AACCAATGAAAATGCAAAGC.................................................................................................................................. 20 2 9 0.11 1 0 0 1 0
.......................................................................................................................................................................................ACAACAGCAACAAGAAGAAC................................................ 20 1 16 0.06 1 0 0 0 1
............ACTTATGGCACAGGCGGCT............................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

CCTGCTTGAGCCTGAATACCGTGTCCTACGTGTCGTTGCCCTAGGTGTTCCACTCAAAAACGACGGAGATATAGTTCGGTCTTCTTTACTCGATGCTTGTTTTGTTTACTTTTTCGTTTCGGATCGTATCTGTGGCAATCGGTTACTCATTTCTTTTCTCTTAGTTTTTTCTGTCTCTCGTGCTGTTGTCGTTGTTGTTCTTGTTGCTCTCGAATTTAAAGTTTTCTCTTAGGTGTAAGTTCCAGTGTTGA
**************************************************((..(((.(((.(((((((......(((((.......)).))).....................((...))(((((.........)))))....(((...............)))........)))).)))))).))).))..........**************************************************
Read size # Mismatch Hit Count Total Norm Total M040
female body
M059
embryo
GSM444067
head
.......................................................................................................GGTTACTTCTACGTTTCGGAT............................................................................................................................... 21 3 5 0.20 1 1 0 0
.................................................................................................................................CTGTGTCAATCGGTTAAT........................................................................................................ 18 2 11 0.09 1 0 1 0
.............................................................................................................................................................................................CGTTGCTGTTCTTGTTGCTA.......................................... 20 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:16185257-16185507 + dps_1239 GGACGAACTCGGACTTATGG---CACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTT-GCTGC---CTCTATATCAAGCCAGA----------------------------------------------------AGAAA-TGAGCT---ACGAACAAAACAAATGAAAAAG--CAA-------AGCCTAGCAT-AGAC----ACCGT----TAGCC-----------------------------------------AATG-------------AGT---AAAGA---------AAAGAGAATCAAAA-------------------------A-AGA--CAG-AGAGCACGACAA-CAG-CAACAACAA---GAACAACGAGAGCTTAAA----TTTCAAAAGAGAA------------------------------------------T--------------------CCA-----C-------A--T--TCAAGGTCACAACT
droPer2 scaffold_4:579310-579560 - GGACGAACTCGGACTTATGG---CACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTT-GCTGC---CTCTATATCAAGCCAGA----------------------------------------------------AGAAA-TGAGCT---ACGAACAAAACAAATGAAAAAG--CAA-------AGCCTAGCAT-AGAC----ACCGT----TAGCC-----------------------------------------AATG-------------AGT---AAAGA---------AAAGAGAATCAAAA-------------------------A-AGA--CAG-AGAGCACGACAA-CAG-CAACAACAA---GAACAACGAGAGCTTAAA----TTTCAAAAGAGAA------------------------------------------T--------------------CCA-----C-------A--T--TCAAGGTCACAACT
droWil2 scf2_1100000004382:323205-323454 - GGATGATATTGGACTAATGGCCGCACAGGATGCACAGCAGCGGGATCCTCAAGGTGAGTTTTT-GTTTA---AAATTAT-----ATTACTTATACT--------ACCAAAAAAAAAAAAAAACAAATATATATATATCAGAA------GAAAA---AAAGA-----CAAATGAAAAAGATCAAATAGAAAAGATTAGCTT-AGGT-CAAGA--AT---ATGAA---------------------------------------------------------------------------------AAGA------------------------------TCG------CAG-CGAGCACGACAAAA-GGCCAAAACAA------------------AAA----TTTCTA-AGAAAA------------------------------------------T--------------------CA---------------------C-AAAACATAACT
droVir3 scaffold_12875:16404843-16405100 - dvi_7300 GGATGAACTTGGACTAATGGCCGCACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTTCATTGCATACTCTATA-----CTCGG-------AAAGATAGTTCAAG----ACTA--TACATATATAAA----------TATA-TAA-----------TAATACAAATGAAAAAG--CAAAAA---CAGT------T-AGAAAT--ATGGT----TAGAC----------------------------------------------------------------------------------------------------------------------------CAGCCGAGCACGACGA-----------CCA--------------GCTAAAA---TTTTCAAATGCAAAT-TAGTAGACGCATAAATAT---GCT-CTTT----ATA--A-------------------------------AGACAATTATTTTTCA----CACAACT
droMoj3 scaffold_6496:7357177-7357438 + GGATGAACTTGGACTAATGGCCGCACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTTCCTTGCATACTCTATA-----CTCGA-------AAAGATAGTTCAAGAAAAACTATATACAAACTTATA----------TATA---------------TAATACAAATGAAAAAG--CAAAAA---CAGTTTAGATC-AATT----ATGGT----TA-----------------------------------------------------------------------------------------------------------------------GG-GAC--CAGCCGAGCACGACGA-----------CCA--------------GCTAAAA---ATTTCAAATGCAAATTTAGTAGAAGCAGAAAAAT---GAT-ATTT--------A-----------------------CGAAT---T-------T--TTCTC----ACACAACT
droGri2 scaffold_15245:5253581-5253842 - GGATGAACTTGGACTAATGGCCGCACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTTCAATGCATACTATATA-----ATCGG-------AAAGATAGTT---GTTAAACTA--------TATATA----------TATA-TTA-----------TAATACGAATGAAAAAG--CAAAAA---CAGTTTAGAAA--AAC----ATGGT----TA------------------------------------------------------------------------------------------------------------------------G-GACCACAGCCGAGCACGACGA-----------CCA--------------GCTAAAA---ATTTCAAATGCAAAT---------------TAGAAAAGGTCCTA---T-ATTAAAAAC---ATA-------------TCAAC---TAGACAAGTATT--TCAAGATCACA---
droAna3 scaffold_13266:17894472-17894741 - GGACGAACTCGGACTCATGG---CACAGGACGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTAAA---AACTCGA----------------------------------------------------TAATATTGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCTAGAGAA----GT-------TAGACAGAAA-----------TCTGAAACAGA-------TTAGCC-T--------------------------------------------TCAAAAAAAAAATTAGAAAGAAAGT--TTTCG-AAG--CAG-CGAGCACGACAA-CA-------ACAAGAAG------TAGAATTTTTA----TTTTAAAA-----------------------------------------------------------TTAAAAA----ATATCAA-------A--T--TCAAGGTCACAACT
droBip1 scf7180000396735:1156707-1157004 - GGACGAACTCGGACTCATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTAAA-----CTCGA----------------------------------------------------TAATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGC-T-AGAA----GT-------TAGACTGAAACAGAAACAGAAACTGAAACAGAAAAAGTATCAG--A-ATCAGAAACAGAAAGAAGAAAAGAAGAAAGCTTAAGA--GAGA-----------------------TTTTTTTCAA-AAG--CAG-CGAGCACGACGA-----------CAA--------------GATTGTA----TT------------------------------------------------TGAAAT-TCCAAAGCACTTAAAGA----ATC---T-------C--T--TCAAGGTCACAACT
droKik1 scf7180000302406:140008-140280 - GGATGAACTTGGACTAATGG---CACAGGATGCGCAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCCAAA-----GTCGA--------------------------TTATATACAA-TATATA----------TATA-TGAGCTACTACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCTT-AGAA----GTTTAT---TAGACAGA-------------------------------------------------------------GAAGA---------A--GAGA-----------------------TGTTT-TTCGAACT--CAG-CGAGCACGACAA-CAA-CCATGACAA--------------GCTTAAA----TTTCAAATGCAAAT---------GCAGATTA-A-------------G-AATGA-AT--------------------CCACG---T-------TATA--CCAAGGTCACAACT
droFic1 scf7180000454066:1261477-1261717 + GGATGAACTTGGACTTATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGA----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCA-AAT--CAG-CGAGCACGACAAACAA------ACAA--------------GCTTAAA-----TTCAAATGCAAAT---------GCAGATAAAA-------------GTATTGAAAT--------------------TTAAC---T-------T--T--TCAAGGTCACAACT
droEle1 scf7180000491349:1033157-1033395 + GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGT----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCA-AAC--CAG-CGAGCACGACAAACA-------AAAA--------------GCTTAAA-----TTAAAATGCAAAT---------GCAGATAAGA-------------G-ATTAAAAT--------------------CCAAC---T-------T--T--CCAAGGTCACAACT
droRho1 scf7180000779999:343381-343596 + GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTAAA-----CTCGA----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCTT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTT-TTCG-AAC--CAG-CGAGCACGACAAACA-------AAAA--------------GCTTAAA-----TTAAAATGCAAAT---------GCAGATAAGA-------------G-ATTAAAAT--------------------------------------------------------
droBia1 scf7180000301506:118872-119118 - GGATGAACTTGGACTATTGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGA-------GA-------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTTT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCAAAT---------GCAGATTAAA------------CG-ATTGAAATC---GAA-----------ATCCAAC---T-------T-TT--TCAAGGTCACA---
droTak1 scf7180000415683:19608-19824 + GGATGAACTTGGACTATTGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTAAA-----ATCGT-----------------------------------------------------TATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAC--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCAAAT---------GCAGATAAAA-------------G-ATTGAAAT--------------------C-----------------------------------
droEug1 scf7180000409672:4592288-4592542 + GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGA----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCC-AGAA----GTTTTTTAATAGAC---------------------------------------------------------------------------------GAGA-----------------------AGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAAAAAAATTCAAATGCAAAT---------GCAGATAAAA-A---ACCAA-ACG-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAAA-
dm3 chr2R:6419362-6419593 - GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAT---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACT
droSim2 2r:7187440-7187671 - dsi_10389 GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------AGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACT
droSec2 scaffold_1:4030817-4031048 - GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACT
droYak3 2R:2721241-2721469 + GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAAA-----------------------TGTTTTTTTG-AAC--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACA---
droEre2 scaffold_4845:19332265-19332496 + GGATGAACTTGGACTAATGG---CACAGGATGCACAACAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAC--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGACGAACTCGGACTTATGG---CACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTT-GCTGC---CTCTATATCAAGCCAGA----------------------------------------------------AGAAA-TGAGCT---ACGAACAAAACAAATGAAAAAG--CAA-------AGCCTAGCAT-AGAC----ACCGT----TAGCC-----------------------------------------AATG-------------AGT---AAAGA---------AAAGAGAATCAAAA-------------------------A-AGA--CAG-AGAGCACGACAA-CAG-CAACAACAA---GAACAACGAGAGCTTAAA----TTTCAAAAGAGAA------------------------------------------T--------------------CCA-----C-------A--T--TCAAGGTCACAACTSizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................CAA-CAG-CAACAACAA---GAACAACGAG............................................................................................................................2511.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................GACAA-CAG-CAACAACAA---GAACAACGAGA...........................................................................................................................2811.0010100000000
.................................ACAGCAACGGGATCCACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
...................G---CACAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010100000000
.............CTTATGG---CACAGGATGCACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000100000
......ACTCGGACTTATGG---CACAGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.5010100000000
...CGAACTCGGACTTATGG---CACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010100000000
................................CACAGCAACGGGATCCACAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010010000000
.......CTCGGACTTATGG---CACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100000000
.....................................................GTGAGTTTTT-GCTGC---CTCTATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010100000000
.......CTCGGACTTATGG---CACAGGATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010000001000
........................ACAGGATGCACAGCAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
GGACGAACTCGGACTTATGG---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................GACAA-CAG-CAACAACAA---GA....................................................................................................................................1930.3310010000000
droPer2
GGACGAACTCGGACTTATGG---CACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTT-GCTGC---CTCTATATCAAGCCAGA----------------------------------------------------AGAAA-TGAGCT---ACGAACAAAACAAATGAAAAAG--CAA-------AGCCTAGCAT-AGAC----ACCGT----TAGCC-----------------------------------------AATG-------------AGT---AAAGA---------AAAGAGAATCAAAA-------------------------A-AGA--CAG-AGAGCACGACAA-CAG-CAACAACAA---GAACAACGAGAGCTTAAA----TTTCAAAAGAGAA------------------------------------------T--------------------CCA-----C-------A--T--TCAAGGTCACAACTSizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
....GAACTCGGACTTATGG---CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.005500000
......................................................................................................................................................................................................................................................................................................................................................AGA--CAG-AGAGCACGACAA-CAG-CAACA.............................................................................................................................................2612.002200000
.....AACTCGGACTTATGG---CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....AACTCGGACTTATGG---CACAGGATGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
......ACTCGGACTTATGG---CACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.GACGAACTCGGACTTATGG---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...CGAACTCGGACTTATGG---CACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........................................................................................................................................................................................................GAC----ACCGT----TAGCC-----------------------------------------AATG-------------AGT---...................................................................................................................................................................................................................................2011.001000001
....GAACTCGGACTTATGG---CG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
............................GATGCACAGCAACGGGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........TCGGACTTATGG---CACAGGATGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droWil2
GGATGATATTGGACTAATGGCCGCACAGGATGCACAGCAGCGGGATCCTCAAGGTGAGTTTTT-GTTTA---AAATTAT-----ATTACTTATACT--------ACCAAAAAAAAAAAAAAACAAATATATATATATCAGAA------GAAAA---AAAGA-----CAAATGAAAAAGATCAAATAGAAAAGATTAGCTT-AGGT-CAAGA--AT---ATGAA---------------------------------------------------------------------------------AAGA------------------------------TCG------CAG-CGAGCACGACAAAA-GGCCAAAACAA------------------AAA----TTTCTA-AGAAAA------------------------------------------T--------------------CA---------------------C-AAAACATAACTSizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
..........................AGGATGCACAGCAGCGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
.............................ATGCACAGCAGCGGGATCCTCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..ATGATATTGGACTAATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..ATGATATTGGACTAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
..............................TGCACAGCAGCGGGATCCTCAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
...........................................................................................................................................................................................................................TGAA---------------------------------------------------------------------------------AAGA------------------------------TCG------CAG-CGAGC..............................................................................................................................................................1911.00110000
....GATATTGGACTAATGGCCGCACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
........TTGGACTAATGGCCGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..................GGCCGCACAGGATGCACAGCAGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..............................................................................................................................................................................................................................A---------------------------------------------------------------------------------AAGA------------------------------TCG------CAG-CGAGCACGACA........................................................................................................................................................2211.00100010
.....................CGCACAGGATGCACAGCAGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.....................CGCACAGGATGCACAGCAGCGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..............TAATGGCCGCACAGGATGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
droVir3
GGATGAACTTGGACTAATGGCCGCACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTTCATTGCATACTCTATA-----CTCGG-------AAAGATAGTTCAAG----ACTA--TACATATATAAA----------TATA-TAA-----------TAATACAAATGAAAAAG--CAAAAA---CAGT------T-AGAAAT--ATGGT----TAGAC----------------------------------------------------------------------------------------------------------------------------CAGCCGAGCACGACGA-----------CCA--------------GCTAAAA---TTTTCAAATGCAAAT-TAGTAGACGCATAAATAT---GCT-CTTT----ATA--A-------------------------------AGACAATTATTTTTCA----CACAACTSizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
.............................ATGCACAGCAACGGGATCCACAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000000000001010001000000000000000000000000000000000000000000000
.....................CGCACAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000000000000000000000000000000000000010
......................GCACAGGATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000000001000000000000000000000100000000000000000000000000000
.........................CAGGATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......ACTTGGACTAATGGCCGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................ACAGCAACGGGATCCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000001000000000000000000000000000000000000000000000000000
............................GATGCACAGCAACGGGATCCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.........TGGACTAATGGCCGCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
...........GACTAATGGCCGCACAGGATGCACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000010000000000000000000000000000000000000000000000000
.............CTAATGGCCGCACAGGATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................CACAGGATGCACAGCAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
.........TGGACTAATGGCCGCACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................ACAGGATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
..................................CAGCAACGGGATCCACAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
...............AATGGCCGCACAGGATGCACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CGA-----------CCA--------------GCTAAAA---TTTTCAAATT.......................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.....AACTTGGACTAATGGCCGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
....................CCGCACAGGATGCACAGCAACGGGATCCACAAGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.001000000000000000000000000000000000000000001000000000000000000000
...........GACTAATGGCCGCACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........TTGGACTAATGGCCGCACAGGATGCACAGCAACGGGATCCACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................4511.001000000000000000000000000000000000000000000000000000100000000000
.......................CACAGGATGCACAGCAACGGGATCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000010000000000000000000000000000000000000000000000
...........................................GATCCACAAGGTGAGTTTTTCATTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
............................GATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
....GAACTTGGACTAATGGCCGCACAGGATGCACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3411.001000000000000000000000000000000000000000000000000000000000100000
...............................GCACAGCAACGGGATCCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
.........................CAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
......................GCACAGGATGCACAGCAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
.........................CAGGATGCACAGCAACGGGATCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
.....AACTTGGACTAATGGCCGCACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
....GAACTTGGACTAATGGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GGATGAACTTGGACTAATGGCCGCACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTTCCTTGCATACTCTATA-----CTCGA-------AAAGATAGTTCAAGAAAAACTATATACAAACTTATA----------TATA---------------TAATACAAATGAAAAAG--CAAAAA---CAGTTTAGATC-AATT----ATGGT----TA-----------------------------------------------------------------------------------------------------------------------GG-GAC--CAGCCGAGCACGACGA-----------CCA--------------GCTAAAA---ATTTCAAATGCAAATTTAGTAGAAGCAGAAAAAT---GAT-ATTT--------A-----------------------CGAAT---T-------T--TTCTC----ACACAACTSizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
......................GCACAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002100001
...................GCCGCACAGGATGCACAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
....GAACTTGGACTAATGGCCGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................................................ATACTCTATA-----CTCGA-------AAAGATA...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...........................................................................................................................................................................................................................A-----------------------------------------------------------------------------------------------------------------------GG-GAC--CAGCCGAGCACGACG........................................................................................................................................................2111.001000010
........................ACAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................GCACAGGATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
....GAACTTGGACTAATGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................GCACAGGATGCACAGCAACGGGATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAATTTAGTAGAAGCAGAAA..................................................................................2411.001100000
droGri2
GGATGAACTTGGACTAATGGCCGCACAGGATGCACAGCAACGGGATCCACAAGGTGAGTTTTTCAATGCATACTATATA-----ATCGG-------AAAGATAGTT---GTTAAACTA--------TATATA----------TATA-TTA-----------TAATACGAATGAAAAAG--CAAAAA---CAGTTTAGAAA--AAC----ATGGT----TA------------------------------------------------------------------------------------------------------------------------G-GACCACAGCCGAGCACGACGA-----------CCA--------------GCTAAAA---ATTTCAAATGCAAAT---------------TAGAAAAGGTCCTA---T-ATTAAAAAC---ATA-------------TCAAC---TAGACAAGTATT--TCAAGATCACA---SizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads
droAna3
GGACGAACTCGGACTCATGG---CACAGGACGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTAAA---AACTCGA----------------------------------------------------TAATATTGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCTAGAGAA----GT-------TAGACAGAAA-----------TCTGAAACAGA-------TTAGCC-T--------------------------------------------TCAAAAAAAAAATTAGAAAGAAAGT--TTTCG-AAG--CAG-CGAGCACGACAA-CA-------ACAAGAAG------TAGAATTTTTA----TTTTAAAA-----------------------------------------------------------TTAAAAA----ATATCAA-------A--T--TCAAGGTCACAACTSizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
...............................GCACAGCAACGGGATCCCCAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
........TCGGACTCATGG---CACAGGACGCACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................GG---CACAGGACGCACAGCAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..ACGAACTCGGACTCATGG---CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................AAGT--TTTCG-AAG--CAG-CGAGC..............................................................................................................................................................2011.001000010
......ACTCGGACTCATGG---CACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......ACTCGGACTCATGG---CACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..........GGACTCATGG---CACAGGACGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
................ATGG---CACAGGACGCACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......CTCGGACTCATGG---CACAGGACGCACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...CGAACTCGGACTCATGG---CACAGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...........................................................................................................................................................................................TACAGCTTAGCTAGAGAA----GT-------TAGA....................................................................................................................................................................................................................................................................................................2411.001000001
.GACGAACTCGGACTCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.........................CAGGACGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
...........................GGACGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................GG---CACAGGACGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.......CTCGGACTCATGG---CACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
........................ACAGGACGCACAGCAACGGGATCCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................ACGCACAGCAACGGGATCCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..................GG---CACAGGACGCACAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...................................AGCAACGGGATCCCCAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
...................................AGCAACGGGATCCCCAAGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331100000
droBip1
GGACGAACTCGGACTCATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTAAA-----CTCGA----------------------------------------------------TAATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGC-T-AGAA----GT-------TAGACTGAAACAGAAACAGAAACTGAAACAGAAAAAGTATCAG--A-ATCAGAAACAGAAAGAAGAAAAGAAGAAAGCTTAAGA--GAGA-----------------------TTTTTTTCAA-AAG--CAG-CGAGCACGACGA-----------CAA--------------GATTGTA----TT------------------------------------------------TGAAAT-TCCAAAGCACTTAAAGA----ATC---T-------C--T--TCAAGGTCACAACTSizeHit CountTotal NormTotal
No Reads
droKik1
GGATGAACTTGGACTAATGG---CACAGGATGCGCAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCCAAA-----GTCGA--------------------------TTATATACAA-TATATA----------TATA-TGAGCTACTACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCTT-AGAA----GTTTAT---TAGACAGA-------------------------------------------------------------GAAGA---------A--GAGA-----------------------TGTTT-TTCGAACT--CAG-CGAGCACGACAA-CAA-CCATGACAA--------------GCTTAAA----TTTCAAATGCAAAT---------GCAGATTA-A-------------G-AATGA-AT--------------------CCACG---T-------TATA--CCAAGGTCACAACTSizeHit CountTotal NormTotal
No Reads
droFic1
GGATGAACTTGGACTTATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGA----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCA-AAT--CAG-CGAGCACGACAAACAA------ACAA--------------GCTTAAA-----TTCAAATGCAAAT---------GCAGATAAAA-------------GTATTGAAAT--------------------TTAAC---T-------T--T--TCAAGGTCACAACTSizeHit CountTotal NormTotal
No Reads
droEle1
GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGT----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCA-AAC--CAG-CGAGCACGACAAACA-------AAAA--------------GCTTAAA-----TTAAAATGCAAAT---------GCAGATAAGA-------------G-ATTAAAAT--------------------CCAAC---T-------T--T--CCAAGGTCACAACTSizeHit CountTotal NormTotal
No Reads
droRho1
GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTAAA-----CTCGA----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCTT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTT-TTCG-AAC--CAG-CGAGCACGACAAACA-------AAAA--------------GCTTAAA-----TTAAAATGCAAAT---------GCAGATAAGA-------------G-ATTAAAAT--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GGATGAACTTGGACTATTGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGA-------GA-------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTTT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCAAAT---------GCAGATTAAA------------CG-ATTGAAATC---GAA-----------ATCCAAC---T-------T-TT--TCAAGGTCACA---SizeHit CountTotal NormTotal
No Reads
droTak1
GGATGAACTTGGACTATTGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTAAA-----ATCGT-----------------------------------------------------TATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCT-AGAA----GTTTT----TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAC--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCAAAT---------GCAGATAAAA-------------G-ATTGAAAT--------------------C-----------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----CTCGA----------------------------------------------------TTATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTACAGCTTAGCCC-AGAA----GTTTTTTAATAGAC---------------------------------------------------------------------------------GAGA-----------------------AGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAAAAAAATTCAAATGCAAAT---------GCAGATAAAA-A---ACCAA-ACG-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAAA-SizeHit CountTotal NormTotal
No Reads
dm3
GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAT---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACTSizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
..........................AGGATGCACAGCAACGGGATCCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24115.001500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------T....................................................................................................................................................................................................................................................................................................................................................................................21113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GATGAACTTGGACTAATGG---CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000081000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..ATGAACTTGGACTAATGG---CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21112.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
............ACTAATGG---CACAGGATGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000410000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CCAAGGTGAGTGTTT-GTTGC---C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000020000
...TGAACTTGGACTAATGG---CACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACAGGATGCACAGCAACGGGATCCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000602000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAGGATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000
.........................................................................TCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGC..........................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000010000000000000000000000200000000000000000000000000000000000000000000010000
................ATGG---CACAGGATGCACAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.................TGG---CACAGGATGCACAGCAACGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ACTAATGG---CACAGGATGCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000123000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACAGGATGCACAGCAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000031000
...............AATGG---CACAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................TGG---CACAGGATGCACAGCAACGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GG---CACAGGATGCACAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CAGGATGCACAGCAACGGGATCCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CACAGCAACGGGATCCCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TAGAT---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAT--.......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.................TGG---CACAGGATGCACAGCAACGGGATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................CAAAAAGTATAGCTTAGCCT-A........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTCG-AAT--CAG-CGAGCACGACA........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................ATGG---CACAGGATGCACAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AAT--CAG-CGAGCACGACAAAC.....................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................AGAT---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AA..........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................GAGCACGACAAACA-------ACAA--------------GCT........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.................................................................................................................................................................................................................GT--AT---TAGAT---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTT...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGT.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACTTGGACTAATGG---CACAGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATGG---CACAGGATGCACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...TGAACTTGGACTAATGG---CACAGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CTAATGG---CACAGGATGCACAGCAACGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--------------------CCAAC---T-------T--T--TCAAGGTCACAAC.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AGCTTAGCCT-AGAA----GT--AT---TAGAT---------------------------------------------------------------------------------G.................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............ACTAATGG---CACAGGATGCACAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACTTGGACTAATGG---CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GT--AT---TAGAT---------------------------------------------------------------------------------GAGA-----------------------TGTTTTT................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...............................................CCCAAGGTGAGTGTTT-GTTGC---C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................AG-CGAGCACGACAAACA-------ACAA--------------GCTTA......................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------AGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACTSizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
...TGAACTTGGACTAATGG---CACAGGATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300000000200010000
.......CTTGGACTAATGG---CACAGGATGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
..ATGAACTTGGACTAATGG---CACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00201100000000000000
...............AATGG---CACAGGATGCACAGCAACGGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
.......CTTGGACTAATGG---CACAGGATGCACAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
....GAACTTGGACTAATGG---CACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................A-----TTCAAATGCA---------------GATTAAA-------------G-ATTGA...........................................................2411.00100100000000000000
........TTGGACTAATGG---CACAGGATGCACAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
......ACTTGGACTAATGG---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
........TTGGACTAATGG---CACAGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.GATGAACTTGGACTAATGG---C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...TGAACTTGGACTAATGG---CACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
.......CTTGGACTAATGG---CACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..............TAATGG---CACAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.......CTTGGACTAATGG---CACAGGATGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
..................................................................................................................................................................................................................................................................................................................GA-----------------------AGTTTTTTCG-AAT--CAG-CGAGCACGG..........................................................................................................................................................2711.00100100000000000000
GGATGAACTTGGACTAATGG---CAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.........TGGACTAATGG---CACAGGATGCACAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
......................................................................................................................................................................................................................................................................................................................................................AAT--CAG-CGAGCACGACAAACA-------A............................................................................................................................................2211.00100000100000000000
.GATGAACTTGGACTAATGG---CACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.GATGAACTTGGACTAATGG---CACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
............................GATGCACAGCAACGGGATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
..................................................................................................................................................................................................................................................................................................................GA-----------------------AGTTTTTTCG-AAT--CAG-CGAGCAC............................................................................................................................................................2511.00100100000000000000
..................GG---CACAGGATGCACAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.....AACTTGGACTAATGG---CACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..ATGAACTTGGACTAATGG---CACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
droSec2
GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCTCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAT--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACTSizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
.GATGAACTTGGACTAATGG---CACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.....................................................................................................................................................................................................CCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------T......................................................................................................................................................................................2111.0010010
......ACTTGGACTAATGG---CACAGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
.............................ATGCACAGCAACGGGATCCTCAAGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
..ATGAACTTGGACTAATGG---CACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
...................................AGCAACGGGATCCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................TGG---CACAGGATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
...................................................................................................................................................................................................AGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------G.................................................................................................................................................................................................................1911.0010001
...............................GCACAGCAACGGGATCCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....AACTTGGACTAATGG---CACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
droYak3
GGATGAACTTGGACTAATGG---CACAGGATGCACAGCAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ACGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAAA-----------------------TGTTTTTTTG-AAC--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACA---SizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
...............AATGG---CACAGGATGCACAGCAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.00300000000003
..................GG---CACAGGATGCACAGCAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00202000000000
......ACTTGGACTAATGG---CACAGGATGCACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000
......................................................................................................................................................................................................................................................................................................................................................AAC--CAG-CGAGCACGACAAACA-------ACAA--------------G..........................................................................................................................2611.00101000000000
........................................................................................A----------------------------------------------------TAATA-TGAGCT---ACGAA-----CAAATGAAA...................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...................G---CACAGGATGCACAGCAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................AAACA-------ACAA--------------GCTTAAA-----TTCAAATGC......................................................................................................2511.00101000000000
...............................GCACAGCAACGGGATCCCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................AGGTGAGTGTTT-GTTGC---CTCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...TGAACTTGGACTAATGG---CACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.............CTAATGG---CACAGGATGCACAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
...............................................................................................................................................................................................................................................................................................................................................TTTTTG-AAC--CAG-CGAGCACG...........................................................................................................................................................2011.00101000000000
.........................CAGGATGCACAGCAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000
........................ACAGGATGCACAGCAACGGGATCCCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAATGCA---------------GATTAAA-------------G-ATTGA...........................................................2311.00101000000000
............................................................................................................................................................................................................................................................................................................................................GTTTTTTTG-AAC--CAG-CGAGCAC............................................................................................................................................................2211.00100100000000
........................ACAGGATGCACAGCAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....................................................................................................................................................................................................CCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAA...............................................................................................................................................................................................................1911.00100000010000
....................................GCAACGGGATCCCCAAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.09101000000000
droEre2
GGATGAACTTGGACTAATGG---CACAGGATGCACAACAACGGGATCCCCAAGGTGAGTGTTT-GTTGC---CTCTGAA-----ATCGA----------------------------------------------------TAATA-TGAGCT---ATGAA-----CAAATGAAAAAG--CAAAAAGTATAGCTTAGCCT-AGAA----GT--AT---TAGAC---------------------------------------------------------------------------------GAGA-----------------------TGTTTTTTCG-AAC--CAG-CGAGCACGACAAACA-------ACAA--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-ATTGAAAT--------------------CCAAC---T-------T--T--TCAAGGTCACAACTSizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
..............TAATGG---CACAGGATGCACAACAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000002
...............................GCACAACAACGGGATCCCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................A--------------GCTTAAA-----TTCAAATGCA---------------GATTAAA-------------G-................................................................2611.0011000000
...................................AACAACGGGATCCCCAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
....................................................................................................................................................................................................................................................................................................................................................G-AAC--CAG-CGAGCACGACAAACA-------ACA..........................................................................................................................................2511.0010000100
....GAACTTGGACTAATGG---CACAGGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.GATGAACTTGGACTAATGG---CACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
...............AATGG---CACAGGATGCACAACAACGGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000001
...................................................................................................................................................................................................................................................................................................................A-----------------------TGTTTTTTCG-AAC--CAG-CGAGC..............................................................................................................................................................2211.0010000100
...TGAACTTGGACTAATGG---CACAGGATGCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
.....AACTTGGACTAATGG---CACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.....................................CAACGGGATCCCCAAGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000

Generated: 05/18/2015 at 12:19 AM