ID:

dps_123

 Coordinate:

2:25763565-25763639 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.6 -49.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTACAAGGACTTTTGGTAAATTCTCAAACAAATTTCAAGCCATAAAGGCGGCCCAGATGTTGGCAGCACCCTGCTGAAGAAGCTTCTTCGTGAGGATCGTACGGTGCTGGCAGCAGCTGTGCCGCCTTTGAAATTTGTTAAAGAGTTTATCGAAGGTCCTGCTGAGCGTCACCCA

***********************************((((...((((((((((.(((.(((((.(((((((.(((((((((....))))))........))).))))))).))))).))).))))))))))...))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 M059

embryo

 GSM444067

head

 M062

head

 GSM343916

embryo

 V112

male body
........................................................................................................TGCTGGCAGCAGCTGTGCCGC.................................................. 21 0 1 206.00 206 206 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCG................................................... 20 0 1 178.00 178 173 0 4 0 0 1
........................................................................................................TGCTGGCAGCAGCTGTGCC.................................................... 19 0 1 83.00 83 83 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGT.................................................. 21 1 1 46.00 46 42 0 3 0 0 1
................................................CGGCCCAGATGTTGGCAGCA........................................................................................................... 20 0 1 41.00 41 41 0 0 0 0 0
................................................CGGCCCAGATGTTGGCAGCAC.......................................................................................................... 21 0 1 33.00 33 33 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGCC................................................. 22 0 1 18.00 18 17 1 0 0 0 0
.........................................................................................................GCTGGCAGCAGCTGTGCCGC.................................................. 20 0 1 17.00 17 17 0 0 0 0 0
.......................................................................................................GTGCTGGCAGCAGCTGTGCC.................................................... 20 0 1 16.00 16 16 0 0 0 0 0
..........................................................................................................CTGGCAGCAGCTGTGCCGCC................................................. 20 0 1 14.00 14 14 0 0 0 0 0
................................................CGGCCCAGATGTTGGCAGC............................................................................................................ 19 0 1 12.00 12 11 0 0 1 0 0
.......................................................................................................GTGCTGGCAGCAGCTGTGCCGC.................................................. 22 0 1 9.00 9 9 0 0 0 0 0
.........................................................................................................GCTGGCAGCAGCTGTGCC.................................................... 18 0 1 9.00 9 9 0 0 0 0 0
.........................................................................................................GCTGGCAGCAGCTGTGCCGT.................................................. 20 1 1 7.00 7 7 0 0 0 0 0
................................................CGGCCCAGATGTTGGCAGCACC......................................................................................................... 22 0 1 7.00 7 7 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGCCT................................................ 23 0 1 6.00 6 6 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGTT................................................. 22 2 2 6.00 12 12 0 0 0 0 0
...............................................GCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 24 0 1 6.00 6 1 4 0 1 0 0
.........................................................................................................GCTGGCAGCAGCTGTGCCG................................................... 19 0 1 6.00 6 6 0 0 0 0 0
..........................................................................................................CTGGCAGCAGCTGTGCCGCCT................................................ 21 0 1 5.00 5 5 0 0 0 0 0
.................................................GGCCCAGATGTTGGCAGCACCC........................................................................................................ 22 0 1 4.00 4 3 0 0 1 0 0
.................................................GGCCCAGATGTTGGCAGCAC.......................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0
..............................................GTCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 25 1 1 3.00 3 0 3 0 0 0 0
.............................................................................................................................................AGAGTTTATCGAAGGTCCT............... 19 0 1 3.00 3 0 0 0 0 3 0
.......................................................................................................GTGCTGGCAGCAGCTGTGCCG................................................... 21 0 1 3.00 3 3 0 0 0 0 0
...........................................................................................................TGGCAGCAGCTGTGCCGCCTT............................................... 21 0 1 3.00 3 3 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCT................................................... 20 1 1 3.00 3 3 0 0 0 0 0
..............................................GGCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 25 0 1 3.00 3 0 3 0 0 0 0
.............................................AGGCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 26 0 1 3.00 3 2 0 0 1 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGCCA................................................ 23 1 1 3.00 3 3 0 0 0 0 0
..........................................................................................................CTGGCAGCAGCTGTGCCGCCTT............................................... 22 0 1 3.00 3 3 0 0 0 0 0
.......................................................................................................GTGCTGGCAGCAGCTGTGCCGT.................................................. 22 1 1 2.00 2 1 0 1 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGC..................................................... 18 0 1 2.00 2 2 0 0 0 0 0
..................................................GCCCAGATGTTGGCAGCACC......................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
.................................................GGCCCAGATGTTGGCAGCA........................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0
.......................................................................................................GTGCTGGCAGCAGCTGTGC..................................................... 19 0 1 2.00 2 2 0 0 0 0 0
..............................................GGCGGCCCAGATGTTGGC............................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGA.................................................. 21 1 1 2.00 2 2 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGAGCCG................................................... 20 1 1 2.00 2 1 0 1 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCTT.................................................. 21 2 2 1.50 3 3 0 0 0 0 0
................................................CGGCCCAGATGTTGGCAGCT........................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................................CTGGCAGCAGCTGTGCCGCT................................................. 20 1 1 1.00 1 1 0 0 0 0 0
...............................................GCGGCCCAGATCTTGGCAGCACCC........................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0
.............................................ATGCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................TGCTGGCAGCAGATGTGCCGCC................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.....................................................CAGATGTTGGCAGCACCC........................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0
.......................................................................................................GGGCTGGCAGCAGCTGTGCC.................................................... 20 1 1 1.00 1 0 0 0 1 0 0
..............................................GGCGGCCCAGATGTTGGCAGCACC......................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................................CTGGCAGCAGCTGTGCCGC.................................................. 19 0 1 1.00 1 1 0 0 0 0 0
................................................CGGCCCAGATGTTGGCAGT............................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................CTGCTGGCAGCAGCTGTGCCGC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................GTACGGTGCTGGCAGCAGC.......................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.............................................CGGCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
..............................................GGCGGCCCAGATGTTGGCAGCA........................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGGTGTGCCGCC................................................. 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................GGTGCTGGCAGCAGCTGTGCCGCCT................................................ 25 0 1 1.00 1 0 1 0 0 0 0
.................................................GGCCCAGATGTTGGCAGCACC......................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................GGTGCTGGCAGCAGCTGTGC..................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...........................................AAAGGCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0
..............................................GGCGGCCCAGATGTTGGCAGC............................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...................................................CCAAGATGTTGGCAGCACCCTG...................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GCCCAGATGTTGGCAGCAC.......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGCT................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................TGTTAAAGAGTTTATCGAAGG................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................GTACGGTGCTGGCAGCAGCTGTGCC.................................................... 25 0 1 1.00 1 0 0 0 1 0 0
.............................................AGCCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 26 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTTTGCCGC.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGCCTTT.............................................. 25 0 1 1.00 1 1 0 0 0 0 0
.....AGGACTTTTGGTAAATTCTC...................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................CGGCTGGCAGCAGCTGTGTCGCC................................................. 23 3 1 1.00 1 0 1 0 0 0 0
.....................................................................................................CGGTGCTGGCAGCAGCTGTGCCGCCT................................................ 26 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGCTTGCAGCAGCTGTGCCG................................................... 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGTTGGCAGCAGCTGTGCCG................................................... 20 1 2 1.00 2 1 0 1 0 0 0
................................................CGGCCCAGATGTTGACAGCA........................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................AAGGCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................TGCTGGCAACAGCTGTGCCG................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTGCTGGCAGCAGCTGTGCCG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................GCTGGCAGCAGCTGTGCCGCCT................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................AGAGTTTATCGAAGGTCCC............... 19 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGCCTT............................................... 24 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGTAGCTGTGCCG................................................... 20 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCCGTGCC.................................................... 19 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................CGGTGCTGGCAGCAGCTGTG...................................................... 20 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGCCC................................................ 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................GCTGGCAGCAGCTGTGCCGCC................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................ATGCTGGCAGCAGCTGTGCC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
...............................................CCGGCCCAGATGTTGGCAGCAC.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTGCTGGCAGCAGCTGTGCCGC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................ATCCGGCCCAGATGTTGGCAGCACCC........................................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................................................................TAAAGAGTTTATCGAAGGTCC................ 21 0 1 1.00 1 0 0 0 0 0 1
..................................................................................................GTACGGTGCTGGCAGCAGCTGTGC..................................................... 24 0 1 1.00 1 0 1 0 0 0 0
................................................CGGCCCAGATGTTGGCAGCACCC........................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................GGTGCTGGCAGCAGCTGTGCCGCCC................................................ 25 1 1 1.00 1 0 1 0 0 0 0
.......................................................................................................GTGCTGGCAGCAGCTGTGGC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
....................................................................................................ACGGTGCTGGCAGCAGCTGT....................................................... 20 0 1 1.00 1 1 0 0 0 0 0
...............................................GCGGCCCAGATGTTGGCAGCACC......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
..................................................GCCCAGATGTTGGCAGCACCC........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
................................................CGGCCCAGATGTTGGCAGCACCA........................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................TGGGCAGGACCCTGCTGAAGAA.............................................................................................. 22 2 2 0.50 1 1 0 0 0 0 0
.........................................................................................................GCTGGCAGCAGCTGTGCCGTT................................................. 21 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCT.................................................... 19 1 2 0.50 1 1 0 0 0 0 0
........................................................................................................TGCTGGCAGCAGCTGTGCCGTTT................................................ 23 2 2 0.50 1 1 0 0 0 0 0
..................................................GGCCAGATGTTGGCAGCA........................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................CTTTGAACTTGGTTGAAGAGTT............................ 22 3 3 0.33 1 1 0 0 0 0 0
..........................................................................................................CTGGCAGCAGCTGTGCCGTT................................................. 20 2 3 0.33 1 1 0 0 0 0 0
........................................................................................................TGCAGGCAGCAGCTGTGCCGTT................................................. 22 3 4 0.25 1 1 0 0 0 0 0
......................................................................................................ATTGCTGGCAGCAGCTGTGCCGT.................................................. 23 3 4 0.25 1 1 0 0 0 0 0
........................................................................................................GGCTGGCAGCAGCTGTGCCGTT................................................. 22 3 5 0.20 1 1 0 0 0 0 0
.........................................................................................................GCTGGCAGCAGCTGTGTT.................................................... 18 2 19 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CATGTTCCTGAAAACCATTTAAGAGTTTGTTTAAAGTTCGGTATTTCCGCCGGGTCTACAACCGTCGTGGGACGACTTCTTCGAAGAAGCACTCCTAGCATGCCACGACCGTCGTCGACACGGCGGAAACTTTAAACAATTTCTCAAATAGCTTCCAGGACGACTCGCAGTGGGT

***********************************((((...((((((((((.(((.(((((.(((((((.(((((((((....))))))........))).))))))).))))).))).))))))))))...))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916

embryo

 M040

female body
.....................AGACTATGTTTAAAGTTCGGGA.................................................................................................................................... 22 3 1 1.00 1 1 0
.....TCCTGCAAATCATTTAAGAGG..................................................................................................................................................... 21 3 2 0.50 1 0 1
...........................................TTTCCGGCGGGCCTACAAT................................................................................................................. 19 3 15 0.07 1 0 1
..........................................................................................................GACCGGCGTCGAGACGGC................................................... 18 2 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 2:25763515-25763689 + dps_123 confident GTACAAGGACTTTTGGTAAATTCTCAA-ACAAATTTCAAGCCA-TAA-AGGCGGCCC---AGATGTTGGCAGCACCCTGCTGAAG------AA-------GCTTCTTC--------------------------------------------------------------GTGAGGA------------TCGTACGGTGCTGGC-AGCAGCTG-----TGCCGCCTTT---GAAATTTGTTAAAGAGTTTATCGAAGGTCCTGCTGAGCGTCAC---CCA
droPer2 scaffold_6:1162988-1163162 - dpe_2243 GTACAAGGACTTTTGGTAAATTCTCAA-ACAAATTTCAAGCCA-TAA-AGGCGGCCC---AGATGTTGGCAGCACCCTGCTGAAG------AA-------GCTTCTTC--------------------------------------------------------------GTGAGGA------------TCGTACGGTGCTGGC-AGCAGCTG-----TGCCGCCTTT---GAAATTTGTTAAAGAGTTTATCGAAGGTCCTGCTGAGCGTCAC---CCA
droWil2 scf2_1100000004902:6588055-6588266 + GTACAAGGACTTTTGGTAAATTCTCAT-ACAAATTTCAAGCCA-TTAGAAGAAAAAGAAA----------AGAAAC-----AGA--------------------------------AAAGGAATTCATCCAAACTATTTGCCAGTAATTGGAATTCAAATTAAATTGCTGCCAA-----AAAGCTTTGA-TGTTTTCCTTTCTCTAGT-TTCT-----GTTTTTCTTT---GAAATTTGTTA-AGAGTTTACCGAAGGTCCTGCTGAGCGTCAC---CCC
droVir3 scaffold_12855:7690636-7690802 - GTACAAGGACTTTTGGTAAATTCACAA-ATACATTTCAGGCCC-CAAAAGGCGGCTA---AGTTGTTGCTAA--AC-----AAAT------TG--------------------------------------------------------------------------AAGCCGC-----AAATTGTGCA---TTTTTGTTTGGC-AAAAGCTG-----AGCTGCTTTT---GAAATGTGTTT-GGAGTTTACCGAAGGTCCTGCTGAGCGTCAC---CCA
droMoj3 scaffold_6540:24975419-24975568 + dmo_2782 candidate GTACAAGGACTTTTGGTAAATTCTTAA-ATACATTTCATGTCA-CAAAGGGCGGCTA---AATTGTTGCCAACAG--------AC------A--------------------------------------------------------------------------------------------------TGTAAGCTGTTGGC-AACAATTT-----AGCTGCTTTT---GAAATGTTTTA-AGAGTTTACCGGAAGTCCTGCTGAGCGTCAC---CCA
droGri2 scaffold_15074:5197884-5198052 + GTACAAGGACTTTTGGTAAACTCTCAACACACATTTCATGCCCGGAAAAGGCGGCTT---AGTTGTTGCCAA--GC-----AAAT------CG--------------------------------------------------------------------------CTGCCAT-----AAA-------TTGCGAATTGTTGGT-AAAAGCTG-----AGCTGCTTTTTTGGAAATGTGTTA-AGAGTTTACCGAAGGTTCTGCTGAGCGTCACC--CCA
droAna3 scaffold_13340:14074537-14074695 - GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA--ATAAGGCATCCG---GACTGTTGACGGCAGC-----GGGC------AG----T--------------------------------------------------------------------------------TAGA-------TTGCCCGCCATCGGG-AGCAGACT-----GGAGGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droBip1 scf7180000395971:1084818-1084976 + GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA--ATGAGGCGTCCG---GGCTGTTGACGGCGGC-----GGGC------AG----T--------------------------------------------------------------------------------TAGA-------TTGCTCGCCGTTGGT-AGCAGACT-----GGAGGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droKik1 scf7180000302706:1794332-1794520 + GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCCA---GGCTGCTGGCGGCGGC-----GGGCAT----AG----A-TAGATCCACATCCGA-AT--------------------------------------CGGAT-------------CGGATCGCA-------TTGCCTGTGGCCGGG-AGCAGCCG-----AGCTGCCTTT---GAAATTCGTTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droFic1 scf7180000453488:226151-226337 + GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGAGGCAGCCGACGAACTGCTGGCGGCGGC-----GGGC------GG----G-GGGATCCGGG------------------------------------------------------------GATACGGATC-----TCGGACTGCCGGCCGGCGGG-AGCAGGCG-----GGCTGCCTTT---GAAATTCGCTG-GGGGTTTAGCGGGGGTCCTGCTGAGCGTCACCACCCA
droEle1 scf7180000491080:2089094-2089268 + GTACAAGGACTTCTGGTAAACTCGCAG-ACGAATTTCAAGCCA-TAAGAGGCGGCTG---GGCTGCTGGCGGTGTC-----GGAT------AG-------GGATCCGT--------------------------------------------------------------ATACGGATCGGC-------CTACCTGGTGCCGGG-AGCAGACG-----AGCTGCCTTT---GAAATTCGCTG-GGAGCTTACTGGGGGTCCTGCTGAGCGTCAC---CCA
droRho1 scf7180000779338:48680-48854 + GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCTG---GACTGCTGGCGGCGGT-----GGGC------GG-------GGATCCGT--------------------------------------------------------------ATACGGATCGGA-------CTGCCTGTGGCCGGG-AGCAGTCG-----AGCTGCCTTT---GAAATTCGCTG-GGAGCTTACTGGGGGTCCTGCTGAGCGTCAC---CCA
droBia1 scf7180000302113:3465611-3465799 - GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCCG---GGCTGCTCCCACCGGA-----GGCT------AG----G-GGGATCCGTGTATCACAGGG-------------------------------------------------------AGACTCAA-------CTGACCACCATTGGG-AGCAGTCGTCTGCGGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droTak1 scf7180000410579:64955-65153 + GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCCT---GGCTGCTGGCGGCGGT-----T----TAGACAGTTGAT-GAGATCCATATACCATATAAGGATCTAATCCAA----------------------------------------------ACAA-------TTGACTGCCGTCGGG-AGCAGCCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droEug1 scf7180000409797:1238135-1238297 - GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAATGGGTAGCCC---AATTGCTGCCGGCGGC-----GGAC------AG----TT-----------------------------------------------------------------------------ATAGAA-------CTGACTACGGCCGGG-AGCAGTAG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
dm3 chr3R:7594379-7594556 - GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGGGGCGGCCA---GCCTGCTGGCGGCGGT-----GGAC------AG----GTGGTGTTCGT--------------------------------------------------------------ATACGGATACGA-------CTGACTGCCGCCGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droSim2 3r:13505772-13505949 + GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGGGGCGGCTA---GCCTGCTGGCGGCGGT-----GGAC------AT----GTGGTTTCCGT--------------------------------------------------------------ATACGGATACGA-------CTGACTGCTGCTGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droSec2 scaffold_0:14371279-14371456 + GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGGGGCGGCTA---GCCTGCTGGCGGCGGT-----GGAC------AT----GTGGTTTCCGT--------------------------------------------------------------ATACGGATACGA-------CTGACTGCTGCTGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droYak3 3R:16823670-16823847 + GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGAGGCGGCCA---GCCTGCTGGCGGCGGT-----GGAC------AG----TAGGTATCCGT--------------------------------------------------------------ATACGGATTCGA-------CTGACTGAGGCCGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA
droEre2 scaffold_4770:14021958-14022135 + GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCAA-TAAGGGGCGGCCA---GCCTGCTGGCGGCGGT-----GGAC------AG----TAAGTATCCGT--------------------------------------------------------------ATACGGATTCGA-------CTGACTGCGGCCGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTACAAGGACTTTTGGTAAATTCTCAA-ACAAATTTCAAGCCA-TAA-AGGCGGCCC---AGATGTTGGCAGCACCCTGCTGAAG------AA-------GCTTCTTC--------------------------------------------------------------GTGAGGA------------TCGTACGGTGCTGGC-AGCAGCTG-----TGCCGCCTTT---GAAATTTGTTAAAGAGTTTATCGAAGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGC........................................................211206.00206020600000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCG.........................................................201178.00178017300041000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCC..........................................................19183.008308300000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGT........................................................21146.004604200031000
...................................................CGGCCC---AGATGTTGGCAGCA..............................................................................................................................................................................................................20141.004104100000000
...................................................CGGCCC---AGATGTTGGCAGCAC.............................................................................................................................................................................................................21133.003303300000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGCC.......................................................22118.001801710000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGCCGC........................................................20117.001701700000000
....................................................................................................................................................................................................GTGCTGGC-AGCAGCTG-----TGCC..........................................................20116.001601600000000
.......................................................................................................................................................................................................CTGGC-AGCAGCTG-----TGCCGCC.......................................................20114.001401400000000
...................................................CGGCCC---AGATGTTGGCAGC...............................................................................................................................................................................................................19112.001201101000000
....................................................................................................................................................................................................GTGCTGGC-AGCAGCTG-----TGCCGC........................................................2219.0090900000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGCC..........................................................1819.0090900000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGCCGT........................................................2017.0070700000000
...................................................CGGCCC---AGATGTTGGCAGCACC............................................................................................................................................................................................................2217.0070700000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGCCT......................................................2316.0060600000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGTT.......................................................2226.001201200000000
..................................................GCGGCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2416.0060141000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGCCG.........................................................1916.0060600000000
.......................................................................................................................................................................................................CTGGC-AGCAGCTG-----TGCCGCCT......................................................2115.0050500000000
....................................................GGCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2214.0040301000000
....................................................GGCCC---AGATGTTGGCAGCAC.............................................................................................................................................................................................................2013.0030300000000
...................................................................................................................................................................................................................................................AGAGTTTATCGAAGGTCCT..................1913.0030000300000
....................................................................................................................................................................................................GTGCTGGC-AGCAGCTG-----TGCCG.........................................................2113.0030300000000
........................................................................................................................................................................................................TGGC-AGCAGCTG-----TGCCGCCTT.....................................................2113.0030300000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCT.........................................................2013.0030300000000
.................................................GGCGGCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2513.0030030000000
................................................AGGCGGCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2613.0030201000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGCCA......................................................2313.0030300000000
.......................................................................................................................................................................................................CTGGC-AGCAGCTG-----TGCCGCCTT.....................................................2213.0030300000000
....................................................................................................................................................................................................GTGCTGGC-AGCAGCTG-----TGCCGT........................................................2212.0020100010000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGC...........................................................1812.0020200000000
.....................................................GCCC---AGATGTTGGCAGCACC............................................................................................................................................................................................................2012.0020200000000
....................................................GGCCC---AGATGTTGGCAGCA..............................................................................................................................................................................................................1912.0020200000000
....................................................................................................................................................................................................GTGCTGGC-AGCAGCTG-----TGC...........................................................1912.0020200000000
.................................................GGCGGCCC---AGATGTTGGC..................................................................................................................................................................................................................1812.0020110000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGA........................................................2112.0020200000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCTT........................................................2121.5030300000000
...................................................CGGCCC---AGATGTTGGCAGCT..............................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................CTGGC-AGCAGCTG-----TGCCGCT.......................................................2011.0010100000000
........................................................C---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................1811.0010010000000
.................................................GGCGGCCC---AGATGTTGGCAGCACC............................................................................................................................................................................................................2411.0010010000000
.......................................................................................................................................................................................................CTGGC-AGCAGCTG-----TGCCGC........................................................1911.0010100000000
...................................................CGGCCC---AGATGTTGGCAGT...............................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................GTACGGTGCTGGC-AGCAGC.....................................................................1911.0010100000000
.................................................GGCGGCCC---AGATGTTGGCAGCA..............................................................................................................................................................................................................2211.0010100000000
...................................................................................................................................................................................................GGTGCTGGC-AGCAGCTG-----TGCCGCCT......................................................2511.0010010000000
....................................................GGCCC---AGATGTTGGCAGCACC............................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................GGTGCTGGC-AGCAGCTG-----TGC...........................................................2011.0010100000000
.............................................AA-AGGCGGCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2811.0010010000000
.................................................GGCGGCCC---AGATGTTGGCAGC...............................................................................................................................................................................................................2111.0010100000000
.....................................................GCCC---AGATGTTGGCAGCAC.............................................................................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGCT.......................................................2211.0010100000000
.............................................................................................................................................................................................................................................TGTTAAAGAGTTTATCGAAGG......................2111.0010100000000
...............................................................................................................................................................................................GTACGGTGCTGGC-AGCAGCTG-----TGCC..........................................................2511.0010001000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGCCTTT---.................................................2511.0010100000000
.....AGGACTTTTGGTAAATTCTC...............................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................CGGTGCTGGC-AGCAGCTG-----TGCCGCCT......................................................2611.0010100000000
..............................................A-AGGCGGCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2711.0010010000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGCCGCCT......................................................2211.0010100000000
...................................................................................................................................................................................................................................................AGAGTTTATCGAAGGTCCC..................1911.0010010000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGCCTT.....................................................2411.0010100000000
..................................................................................................................................................................................................CGGTGCTGGC-AGCAGCTG-----TG............................................................2011.0010100000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGCCC......................................................2311.0010100000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGCCGCC.......................................................2111.0010100000000
................................................................................................................................................................................................................................................TAAAGAGTTTATCGAAGGTCC...................2111.0010000001000
...............................................................................................................................................................................................GTACGGTGCTGGC-AGCAGCTG-----TGC...........................................................2411.0010010000000
...................................................CGGCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2311.0010010000000
...................................................................................................................................................................................................GGTGCTGGC-AGCAGCTG-----TGCCGCCC......................................................2511.0010010000000
.................................................................................................................................................................................................ACGGTGCTGGC-AGCAGCTG-----T.............................................................2011.0010100000000
..................................................GCGGCCC---AGATGTTGGCAGCACC............................................................................................................................................................................................................2311.0010100000000
.....................................................GCCC---AGATGTTGGCAGCACCC...........................................................................................................................................................................................................2111.0010100000000
...................................................CGGCCC---AGATGTTGGCAGCACCA...........................................................................................................................................................................................................2311.0010100000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGCCGTT.......................................................2120.5010100000000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCT..........................................................1920.5010100000000
.......................................................................................................................................................................................................CTGGC-AGCAGCTG-----TGCCGTT.......................................................2030.3310100000000
......................................................................................................................................................................................................GCTGGC-AGCAGCTG-----TGTT..........................................................18190.0510100000000
droPer2
GTACAAGGACTTTTGGTAAATTCTCAA-ACAAATTTCAAGCCA-TAA-AGGCGGCCC---AGATGTTGGCAGCACCCTGCTGAAG------AA-------GCTTCTTC--------------------------------------------------------------GTGAGGA------------TCGTACGGTGCTGGC-AGCAGCTG-----TGCCGCCTTT---GAAATTTGTTAAAGAGTTTATCGAAGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................................................................................................................................AGAGTTTATCGAAGGTCCT..................1916.006600000
....................................................................................................................................................................................................................................................GAGTTTATCGAAGGTCCT..................1812.002200000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGC........................................................2112.002020000
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCG.........................................................2012.002000020
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGCCGT........................................................2111.001010000
................................................AGGCGGCCC---AGATGTTGGCA.................................................................................................................................................................................................................2011.001000010
.....................................................................................................................................................................................................TGCTGGC-AGCAGCTG-----TGGT..........................................................19100.101000010
droWil2
GTACAAGGACTTTTGGTAAATTCTCAT-ACAAATTTCAAGCCA-TTAGAAGAAAAAGAAA----------AGAAAC-----AGA--------------------------------AAAGGAATTCATCCAAACTATTTGCCAGTAATTGGAATTCAAATTAAATTGCTGCCAA-----AAAGCTTTGA-TGTTTTCCTTTCTCTAGT-TTCT-----GTTTTTCTTT---GAAATTTGTTA-AGAGTTTACCGAAGGTCCTGCTGAGCGTCAC---CCCSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................................................................................................................................................AGAGTTTACCGAAGGTCCT..................1914.00400040
...........................................................................................................................................................................................................................................TTTGTTA-AGAGTTTACCGAAGG......................2213.00300030
.....AGGACTTTTGGTAAATTCTC...............................................................................................................................................................................................................................................................2012.00201010
........................................................................................................................................................................................................................................................TTACCGAAGGTCCTGCTGAGCGT.........2311.00101000
.................................................................................................................................................................................................................................................A-AGAGTTTACCGAAGGTCCT..................2011.00100010
....................................................................................................................................................................................................................................................GAGTTTACCGAAGGTCCT..................1811.00100010
.....................................................................................................................AAGGAATTCATCCAAACTATTTGCC..........................................................................................................................................2511.00100010
...........TTTGGTAAATTCTCAT-ACAAAT......................................................................................................................................................................................................................................................2211.00100001
......GGACTTTTGGTAAATTCTC...............................................................................................................................................................................................................................................................1911.00100010
.............................................TAGAAGAAAAAGAAA----------AGAAC.............................................................................................................................................................................................................2040.25100010
droVir3
GTACAAGGACTTTTGGTAAATTCACAA-ATACATTTCAGGCCC-CAAAAGGCGGCTA---AGTTGTTGCTAA--AC-----AAAT------TG--------------------------------------------------------------------------AAGCCGC-----AAATTGTGCA---TTTTTGTTTGGC-AAAAGCTG-----AGCTGCTTTT---GAAATGTGTTT-GGAGTTTACCGAAGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................................................................................................................................GTGTTT-GGAGTTTACCGAAGGTC....................2312.0020000000000000000000000000000000000000000000000000000000000000020000000000000000
..............................................................................................................................................................................................................................................GTTT-GGAGTTTACCGAAGGT.....................2011.0010000000000000000000000000000000000000000000000000000000000000010000000000000000
.TACAAGGACTTTTGGTAAATT..................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
droMoj3
GTACAAGGACTTTTGGTAAATTCTTAA-ATACATTTCATGTCA-CAAAGGGCGGCTA---AATTGTTGCCAACAG--------AC------A--------------------------------------------------------------------------------------------------TGTAAGCTGTTGGC-AACAATTT-----AGCTGCTTTT---GAAATGTTTTA-AGAGTTTACCGGAAGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................GCGGCTA---AATTGTTGCCAAC...............................................................................................................................................................................................................2012.002000020
..................................................GCGGCTA---AATTGTTGCCAACA..............................................................................................................................................................................................................2111.001000010
..................................................GCGGCTA---AATTGTTGCCAACAG--------AC------.............................................................................................................................................................................................2411.001000010
........................................................A---AATTGTTGCCAACAG--------AC------A--------------------------------------------------------------------------------------------------TGTAAGCTGT................................................................................2911.001000010
............................................................AATTGTTGCCAACAG--------AC------A--------------------------------------------------------------------------------------------------TGTAAGCTGTT...............................................................................2911.001000010
....................................................................................................................................................................................................CTGTTGGC-AACAATTT-----AGCTGC........................................................2211.001000010
..................................................GCGGCTA---AATTGTTGCCAACAT--------C....................................................................................................................................................................................................2320.501000010
droGri2
GTACAAGGACTTTTGGTAAACTCTCAACACACATTTCATGCCCGGAAAAGGCGGCTT---AGTTGTTGCCAA--GC-----AAAT------CG--------------------------------------------------------------------------CTGCCAT-----AAA-------TTGCGAATTGTTGGT-AAAAGCTG-----AGCTGCTTTTTTGGAAATGTGTTA-AGAGTTTACCGAAGGTTCTGCTGAGCGTCACC--CCASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droAna3
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA--ATAAGGCATCCG---GACTGTTGACGGCAGC-----GGGC------AG----T--------------------------------------------------------------------------------TAGA-------TTGCCCGCCATCGGG-AGCAGACT-----GGAGGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................................................................................................................................................................................TG-GGGGCTTACCGGGGGTCCT..................2113.003001002
...................................................................................................................................................................................................................................................GGGGCTTACCGGGGGTCC...................1812.002020000
.................................................................................................................................................................................................................................................G-GGGGCTTACCGGGGGTCC...................1912.002020000
......GGACTTCTGGTAAACTCC................................................................................................................................................................................................................................................................1811.001010000
.............................................................................................................................................................................................................................GGCCTTT---GAAATTCGCTG-GGGGC................................2311.001010000
.................................TTTCAAGCCA--ATAAGGCATCCG---GACT........................................................................................................................................................................................................................2611.001010000
...................................................................................GC------AG----T--------------------------------------------------------------------------------TAGA-------TTGCCCGCCATCGGG-AGC........................................................................2711.001000010
.......GACTTCTGGTAAACTCCCA..............................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................G-GGGGCTTACCGGGGGTCCT..................2011.001000001
..........................................A--ATAAGGCATCCG---GACTGTTGAC..................................................................................................................................................................................................................2311.001010000
...........................................................................................AG----T--------------------------------------------------------------------------------TAGA-------TTGCCCGCCATCGGG-AGCAGA.....................................................................2811.001001000
................................................AGGCATCCG---GACTGTTGAC..................................................................................................................................................................................................................1911.001100000
.....AGGACTTCTGGTAAACTCCCA..............................................................................................................................................................................................................................................................2111.001100000
droBip1
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA--ATGAGGCGTCCG---GGCTGTTGACGGCGGC-----GGGC------AG----T--------------------------------------------------------------------------------TAGA-------TTGCTCGCCGTTGGT-AGCAGACT-----GGAGGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotal
No Reads
droKik1
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCCA---GGCTGCTGGCGGCGGC-----GGGCAT----AG----A-TAGATCCACATCCGA-AT--------------------------------------CGGAT-------------CGGATCGCA-------TTGCCTGTGGCCGGG-AGCAGCCG-----AGCTGCCTTT---GAAATTCGTTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotal
No Reads
droFic1
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGAGGCAGCCGACGAACTGCTGGCGGCGGC-----GGGC------GG----G-GGGATCCGGG------------------------------------------------------------GATACGGATC-----TCGGACTGCCGGCCGGCGGG-AGCAGGCG-----GGCTGCCTTT---GAAATTCGCTG-GGGGTTTAGCGGGGGTCCTGCTGAGCGTCACCACCCASizeHit CountTotal NormTotal
No Reads
droEle1
GTACAAGGACTTCTGGTAAACTCGCAG-ACGAATTTCAAGCCA-TAAGAGGCGGCTG---GGCTGCTGGCGGTGTC-----GGAT------AG-------GGATCCGT--------------------------------------------------------------ATACGGATCGGC-------CTACCTGGTGCCGGG-AGCAGACG-----AGCTGCCTTT---GAAATTCGCTG-GGAGCTTACTGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotal
No Reads
droRho1
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCTG---GACTGCTGGCGGCGGT-----GGGC------GG-------GGATCCGT--------------------------------------------------------------ATACGGATCGGA-------CTGCCTGTGGCCGGG-AGCAGTCG-----AGCTGCCTTT---GAAATTCGCTG-GGAGCTTACTGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotal
No Reads
droBia1
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCCG---GGCTGCTCCCACCGGA-----GGCT------AG----G-GGGATCCGTGTATCACAGGG-------------------------------------------------------AGACTCAA-------CTGACCACCATTGGG-AGCAGTCGTCTGCGGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotal
No Reads
droTak1
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAAGGGGCGGCCT---GGCTGCTGGCGGCGGT-----T----TAGACAGTTGAT-GAGATCCATATACCATATAAGGATCTAATCCAA----------------------------------------------ACAA-------TTGACTGCCGTCGGG-AGCAGCCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotal
No Reads
droEug1
GTACAAGGACTTCTGGTAAACTCCCAG-ACGAATTTCAAGCCA-TAATGGGTAGCCC---AATTGCTGCCGGCGGC-----GGAC------AG----TT-----------------------------------------------------------------------------ATAGAA-------CTGACTACGGCCGGG-AGCAGTAG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotal
No Reads
dm3
GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGGGGCGGCCA---GCCTGCTGGCGGCGGT-----GGAC------AG----GTGGTGTTCGT--------------------------------------------------------------ATACGGATACGA-------CTGACTGCCGCCGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGGGG.......................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000010000000000000000000001000000000000010000000010000000000000000000
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGGGGG......................2215.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000001100000000000000000
..................................................................TGGCGGCGGT-----GGAC------AG----GTGGT..................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000001000000
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTCCTT.................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTCC...................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TGGCGGCGGT-----GGAC------AG----GTGGTGT................................................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000100
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTCCT..................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AATTCGCTG-GGGGCTTACC...........................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TG-GGGGCTTACCGGGGGTCCT..................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CGGGGGTCCTGCTGAGCGTC........2012.002000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TGGCGGCGGT-----GGAC------AG----GTGGTGTT...............................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000
.......................................................................GCGGT-----GGAC------AG----GTGGTGTTCGT--------------------------------------------------------------..............................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
.............................................................................................................................................................................................................................................CGCTG-GGGGCTTACCGGGGG......................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................C------AG----GTGGTGTTCGT--------------------------------------------------------------ATACGGA.......................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................TACGA-------CTGACTGCCGCCGGG-AGCAGG.....................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CGGT-----GGAC------AG----GTGGTGTTCGT--------------------------------------------------------------AT............................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................................................................................TACGA-------CTGACTGCCGCCGGG-A..........................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................................................................................................................................................................................................................GGGTCCTGCTGAGCGTCA.......1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................TGCCTTT---GAAATTCGCTG-GGGGCT...............................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CGGCGGT-----GGAC------AG----GTGGTG.................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTTCGT--------------------------------------------------------------ATACGGATACGA-------CTGA.......................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
................................................................................................................................................................................................................................................................GGTCCTGCTGAGCGTCAC---C..1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................GGATACGA-------CTGACTGCCGCC...............................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................GAC------AG----GTGGTGTTCGT--------------------------------------------------------------ATACG.........................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................TGGCGGCGGT-----GGAC------AG----GTGA...................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................AATTCGCTG-GGGGCTTACCC..........................2011.001000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CGCTG-GGGGCTTACCGGGGGTC....................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCTGGTAAACTCCCAG-CCGAAT......................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GGGCTTACCGGGGGTCCTGCT...............2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................AGCTGCCTTT---GAAATTCGCTG-G....................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................ATTCGCTG-GGGGCTTACC...........................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...........TCTGGTAAACTCCCAG-CCGT........................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................GGT-----GGAC------AG----GTGGTGTTCG.............................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................CTTACCGGGGGTCCTGCTGAGCGTCAC---...2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TGCCGCCGGG-AGCAGGCG-----AGC...........................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CGCTG-GGGGCTTACCGGGGGT.....................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................GCTGGCGGCGGT-----GGAC------AG----GTGGT..................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........TCTGGTAAACTCCCAG-CCGA........................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACAAGGACTTCTGGTAAACTCCCA..............................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........ACTTCTGGTAAACTCCCAG-CCGA........................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................CGGCCA---GCCTGCTGGCGGCGGG-----.......................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................GGGCTTACCGGGGGTCCTGC................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AG-CCGAATTTCAAGCCA-TAAGGGGCGGC.................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATTCGCTG-GGGGCTTACCGGGG.......................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTCT...................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGG.....................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
.TACAAGGACTTCTGGTAAACTCC................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGG.........................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACGA-------CTGACTGCCGCCGGG-AG.........................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGGT........................2011.001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGGGGGTCCT..................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGGGGGTCC...................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATTCGCTG-GGGGCTTACCGGGGG......................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GT-----GGAC------AG----GTGGTGTTCGT--------------------------------------------------------------..............................................................................................................1911.001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTC....................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........TCTGGTAAACTCCCAG-CCGAATTT....................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TACCGGGGGTCCTGCTGAGCGTCAC---C..2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................GGCG-----AGCTGCCTTT---GAAAT............................................1911.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAGGACTTCTGGTAAACTCCT...............................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................CGA-------CTGACTGCCGCCGGG-A..........................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................GCGGT-----GGAC------AG----GTGGTGTTCG.............................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................................GA-------CTGACTGCCGCCGGG-AGCAG......................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................TACGA-------CTGACTGCCGCCGGG-AG.........................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................................................................ATACGA-------CTGACTGCCGCCGGG-AGCATC.....................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................G----GTGGTGTTCGT--------------------------------------------------------------ATACGGATACGA-------C..........................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................TTT---GAAATTCGCTG-GGGG.................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................ACGA-------CTGACTGCCGCCGGG-A..........................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................CGA-------CTGACTGCCGCCGGG-AGC........................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CGAATTTCAAGCCA-TAAGGGG.....................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TGGCGGCGGT-----GGAC------AG----GTGGGT.................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GGCTTACCGGGGGTCCTGCTGA.............2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................TGGCGGCGGT-----GGAC------AG----GT.....................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................................................GGTCCTGCTGAGCGTCAC---CC.2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droSim2
GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGGGGCGGCTA---GCCTGCTGGCGGCGGT-----GGAC------AT----GTGGTTTCCGT--------------------------------------------------------------ATACGGATACGA-------CTGACTGCTGCTGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....AGGACTTCTGGTAAACTCCCAG-CC..........................................................................................................................................................................................................................................................2412.00200200000000000000
................................................................................................................................................................................ATACGA-------CTGACTGCTGCTGGG-AGCAG......................................................................2611.00101000000000000000
...............GTAAACTCCCAG-CCGAATTT....................................................................................................................................................................................................................................................2011.00100010000000000000
..........................................................................................................................................................................ATACGGATACGA-------CTGACT.....................................................................................1811.00110000000000000000
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGGGGG......................2211.00110000000000000000
............................................................................................................................................................................ACGGATACGA-------CTGACTGCT..................................................................................1911.00100000100000000000
......GGACTTCTGGTAAACTCCCAG-CC..........................................................................................................................................................................................................................................................2311.00100100000000000000
.........CTTCTGGTAAACTCCCAG-............................................................................................................................................................................................................................................................1811.00100001000000000000
...............................................................................................................................................................................................................................CCTTT---GAAATTCGCTG-GGGGC................................2111.00101000000000000000
..................................................................TGGCGGCGGT-----GGAC------AT----GTGGTTT................................................................................................................................................................................2311.00100000000000001000
..............................................................................................................................................................................GGATACGA-------CTGACTGCTGCTGGG-AGCAG......................................................................2811.00110000000000000000
..................................................................................................................................................................................................................................TT---GAAATTCGCTG-GGGGC................................1811.00100100000000000000
droSec2
GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGGGGCGGCTA---GCCTGCTGGCGGCGGT-----GGAC------AT----GTGGTTTCCGT--------------------------------------------------------------ATACGGATACGA-------CTGACTGCTGCTGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................................................................................................................................................GGTCCTGCTGAGCGTCAC---CCA2111.0011000
..........TTCTGGTAAACTCCCAG-C...........................................................................................................................................................................................................................................................1811.0011000
.......................................................................GCGGT-----GGAC------AT----GTGGTTT................................................................................................................................................................................1811.0011000
................................................................................................................................................................................ATACGA-------CTGACTGCTGCT...............................................................................1811.0010010
.....AGGACTTCTGGTAAACTCCCAG-CC..........................................................................................................................................................................................................................................................2411.0010010
..............................................................................................................................................................................................TGACTGCTGCTGGG-AGCAGGCG-----AGCTGC........................................................2811.0010001
.........CTTCTGGTAAACTCCCAG-CCGAATTT....................................................................................................................................................................................................................................................2611.0011000
droYak3
GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCCA-TAAGAGGCGGCCA---GCCTGCTGGCGGCGGT-----GGAC------AG----TAGGTATCCGT--------------------------------------------------------------ATACGGATTCGA-------CTGACTGAGGCCGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......GACTTCTGGTAAACTCCCAG-CC..........................................................................................................................................................................................................................................................2217.00700700000000
.............................................................................................................................................................................................CTGACTGAGGCCGGG-AGCAGGCG-----AGC...........................................................2615.00500000000005
......GGACTTCTGGTAAACTCCCAG-CC..........................................................................................................................................................................................................................................................2314.00401300000000
.....AGGACTTCTGGTAAACTCCCAG-CC..........................................................................................................................................................................................................................................................2413.00300300000000
.................................................................................................................................................................................................CTGAGGCCGGG-AGCAGGCG-----AGC...........................................................2212.00201000010000
..............................................................................................................................................................................GGATTCGA-------CTGACTGAGGC................................................................................1911.00100100000000
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTCC...................2211.00100100000000
..................................................................................................................................................................................TCGA-------CTGACTGAGGCCGGG-AG.........................................................................2111.00101000000000
.........CTTCTGGTAAACTCCCAG-CCGA........................................................................................................................................................................................................................................................2211.00101000000000
.........................................................................................................CGT--------------------------------------------------------------ATACGGATTCGA-------CTGACT.....................................................................................2111.00100000010000
....AAGGACTTCTGGTAAACTCCCAG-CC..........................................................................................................................................................................................................................................................2511.00110000000000
......GGACTTCTGGTAAACTCC................................................................................................................................................................................................................................................................1811.00100100000000
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTC....................2111.00100100000000
.................................................................................................................................................................................................................................................G-GGGGCTTACCGGGGGTCC...................1911.00100100000000
......................................................................GGCGGT-----GGAC------AG----TAGGTATC...............................................................................................................................................................................2011.00100000010000
droEre2
GTACAAGGACTTCTGGTAAACTCCCAG-CCGAATTTCAAGCAA-TAAGGGGCGGCCA---GCCTGCTGGCGGCGGT-----GGAC------AG----TAAGTATCCGT--------------------------------------------------------------ATACGGATTCGA-------CTGACTGCGGCCGGG-AGCAGGCG-----AGCTGCCTTT---GAAATTCGCTG-GGGGCTTACCGGGGGTCCTGCTGAGCGTCAC---CCASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................................................................................................................................................GCTG-GGGGCTTACCGGGGGTCC...................2212.0020101000
............................................................................................................................................................................ACGGATTCGA-------CTGACTGCGGCCGGG-AGC........................................................................2812.0020000002
....................................................GGCCA---GCCTGCTGGCGGCGGT-----GGAC------A............................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................CTTT---GAAATTCGCTG-GGGG.................................1911.0010010000
..................................................................TGGCGGCGGT-----GGAC------AG----TAA....................................................................................................................................................................................1911.0010000010
.................................................................................................................................................................................TTCGA-------CTGACTGCGGCCGGG-A..........................................................................2111.0010010000
...........................................................................................................................................................................................................................................TTCGCTG-GGGGCTTACCGGGG.......................2111.0010000100
.............................................................................................................................................................................................................................TGCCTTT---GAAATTCGCTG-GGGGCT...............................2411.0010000010
..........TTCTGGTAAACTCCCAG-CCGAAT......................................................................................................................................................................................................................................................2311.0011000000
.................................................................................................................................................................................TTCGA-------CTGACTGCGGCCGGG-AGCAG......................................................................2511.0010000001
............................................................................................G----TAAGTATCCGT--------------------------------------------------------------ATACGGA.......................................................................................................1911.0010000010
............................................................................................................................................................................ACGGATTCGA-------CTGACTGCGGCCGGG-AGT........................................................................2811.0010000001
..................................................................................................................................................................................TCGA-------CTGACTGCGGCCGGG-AGC........................................................................2211.0010000100
..........................................A-TAAGGGGCGGCCA---GCCTGCTGGCGGC...............................................................................................................................................................................................................2711.0011000000
..................................................................................................................................................................................TCGA-------CTGACTGCGGCCGGG-AG.........................................................................2111.0011000000

Generated: 10/20/2015 at 11:22 PM