ID:

dps_121

 Coordinate:

4_group4:1495947-1495994 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.9

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 3:10638803-10638824 +
  2. dps_121  4_group4:1495947-1495968 -
star

Sense Strand Reads

GGGAAAATTTGTTTTTGAAGCCCTTACGGTGGTACGACACTAGGCTTTGCCACTAACCATACAGTATATATACTGTATATACTGTATGGTTAGTGGCTTTGCCTTCTCTTCTGTGCTGTGAAGAGGGAGAGAGAGATAGAATGCGAAC
***********************************......((((...(((((((((((((((((((((((...)))))))))))))))))))))))...)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 V112
male body		 M059
embryo
 GSM444067
head
 SRR902011
testis
 M062
head
 SRR902010
ovaries
 SRR902012
CNS imaginal disc
...............................................................................TACTGTATGGTTAGTGGCTTTG............................................... 22 0 1 16.00 16 11 1 2 0 0 1 0 1 0
...............................................................................TACTGTATGGTTAGTGGCTTT................................................ 21 0 1 4.00 4 2 0 1 1 0 0 0 0 0
...............................................................................TACTGTATGGTTAGTGGCTTTGC.............................................. 23 0 1 3.00 3 2 0 0 0 0 0 1 0 0
.................AAGCCATTACGCCGGTACGA............................................................................................................... 20 3 6 2.33 14 14 0 0 0 0 0 0 0 0
................................................................................ACTGTATGGTTAGTGGCTTTG............................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0
............................................................................ATATACTGTATGGTTAGTGGCT.................................................. 22 0 2 1.50 3 1 0 0 2 0 0 0 0 0
.........................................................................TGTATATACTGTATGGTTAGTGGC................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................ATGGTTAGTGGCTTTGCCTTC.......................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................TGTATATACTGTATGGTTAGTGACTT................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................GCTGTGAAGAGGGAGAGAG............... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................TACTGTATGGTTAGTGGCTTTT............................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................ATACTGTATGGTTAGTGGCTT................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................ACTGTATGGTTAGTGGCTTTGC.............................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................ATACTGTATGGTTAGTGGCTTTT............................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................TACTGTATGGTTAGTGGCTTTTCCT............................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................ACTGTATGGTTAGTGGCTTTTCCT............................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...............TTAAGCCATTACGCTGGTACG................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................TTGCCACTAACCATACAGTATA................................................................................ 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................ATATACTGTATGGTTAGTGGC................................................... 21 0 14 0.43 6 1 0 1 0 2 1 0 0 1
..............................................................................ATACTGTATGGTTAGTGGCT.................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................ATATACTGTATGGTTAGTGGCTGT................................................ 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................ATATACTGTATGGTTAGTGACTTT................................................ 24 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................TATACTGTATGGTTAGTGGCT.................................................. 21 0 3 0.33 1 0 0 0 0 1 0 0 0 0
...................................................................................................................CTGTGTAGAGGGATAGAGA.............. 19 2 4 0.25 1 1 0 0 0 0 0 0 0 0
.............................................................................TATACTGTATGGTTAGTGACTT................................................. 22 1 8 0.25 2 2 0 0 0 0 0 0 0 0
..............................................................................ATACTGTATGGTTAGTGGC................................................... 19 0 20 0.25 5 5 0 0 0 0 0 0 0 0
...............................................................................................................TGGGATGTGAAGAGGGACAGAG............... 22 3 5 0.20 1 0 1 0 0 0 0 0 0 0
......ATTTGTTTTCTAAGCCCTCAC......................................................................................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0
............................................................................ATATACTGTATGGTTAGTGGCTG................................................. 23 1 12 0.17 2 2 0 0 0 0 0 0 0 0
......................................................................TACTGTATGTACTGTATGTTTAGTGT.................................................... 26 3 7 0.14 1 0 0 0 0 0 1 0 0 0
...............................................................................................................TGGGCTGTAAAGAGGGAGGGAG............... 22 3 7 0.14 1 0 1 0 0 0 0 0 0 0
............................................................................GTATACTGTATGGTTAGTGGCTT................................................. 23 1 8 0.13 1 0 1 0 0 0 0 0 0 0
..................AACCGTTACGGTGGTACGT............................................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0 0 0 0
............................................................................GTATACTGTATGGTTAGTGGCTTG................................................ 24 2 12 0.08 1 0 1 0 0 0 0 0 0 0
.............................................................................TATACTGTATGGTTAGTGACTTC................................................ 23 2 18 0.06 1 1 0 0 0 0 0 0 0 0
..........................................................................GTATATACTGTATGGTTACTG..................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................GGATATACTGTATGGTTC........................................................ 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................TTTATACTGTATGGTTAGTGGC................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0
............................................................................ATATACTGTATGGTTAGTGACTTTA............................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.............................................................................TATACTGTATGGTTAGTGGC................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCCTTTTAAACAAAAACTTCGGGAATGCCACCATGCTGTGATCCGAAACGGTGATTGGTATGTCATATATATGACATATATGACATACCAATCACCGAAACGGAAGAGAAGACACGACACTTCTCCCTCTCTCTCTATCTTACGCTTG
***********************************......((((...(((((((((((((((((((((((...)))))))))))))))))))))))...)))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M059
embryo
 GSM444067
head
 SRR902010
ovaries
 SRR902011
testis
 SRR902012
CNS imaginal disc
 GSM343916
embryo
.......................................GATCCGAAGCAGTGACTGG.......................................................................................... 19 3 20 2.55 51 46 5 0 0 0 0 0 0
................................................CGGTGATTGGTATGTCATAT................................................................................ 20 0 20 1.95 39 37 0 0 1 0 0 0 1
.................................................GGTGATTGGTATGTCATAT................................................................................ 19 0 20 1.65 33 33 0 0 0 0 0 0 0
..........................................CCGAAACGGTGATTGGTATGTCAT.................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0
...........................................CGAAACGGTGATTGGTATGTCATA................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................CGAAACGGTGATTGGTATGTCA................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................ACGGTGATTGGTATGTCATAT................................................................................ 21 0 17 0.65 11 10 0 1 0 0 0 0 0
..............................................AACGGTGATTGGTATGTCAT.................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0 0 0
................................................CGGTGATTGGTATGTCATATA............................................................................... 21 0 14 0.43 6 1 1 0 2 0 1 1 0
..............................................AACGGTGATTGGTATGTCATATG............................................................................... 23 1 16 0.38 6 4 0 0 0 2 0 0 0
.................TTCGGTAATGCGGCCATGCT............................................................................................................... 20 3 6 0.33 2 1 1 0 0 0 0 0 0
................................................CGGTGATTGGTATGTCATA................................................................................. 19 0 20 0.25 5 5 0 0 0 0 0 0 0
......................................AGATCCGAAGCAGTGATTG........................................................................................... 19 3 20 0.15 3 2 1 0 0 0 0 0 0
..................................................GTGATTGGTATGTCATATA............................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0
................................................CGGTGATTGGTATGTCATATGTA............................................................................. 23 1 11 0.09 1 1 0 0 0 0 0 0 0
.............................................AAACGGTGATTGGTATGTCATATG............................................................................... 24 1 12 0.08 1 1 0 0 0 0 0 0 0
........................................ATCCGAAGCAGTGACTGGT......................................................................................... 19 3 13 0.08 1 1 0 0 0 0 0 0 0
..............................................AAAGGTGATTGGTATGTCAT.................................................................................. 20 1 17 0.06 1 1 0 0 0 0 0 0 0
.................................................GGTGATTGGTATGTCATA................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................CGGTGATTGGTATGTCATATTT.............................................................................. 22 1 20 0.05 1 0 0 1 0 0 0 0 0
...............................................ACTGTGATTGGTATGTCATAT................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 4_group4:1495897-1496044 - dps_121 GGGAAAATTTGTTTTTGAAGCCCTTACGGTGGTACGACACTAGGCTTTGCCACTAACCATACAGTATATATACTGTATATACTGTATGGTTAGTGGCTTTGCCTTCTCTTCTGTGCTGTGAAGAGGGAGAGAGAGATAGAATGCGAAC
droPer2 scaffold_10:498026-498116 - GGGAACATTTGTTTTTGAAGCCCTTACGGTGGTACGACACTAGGCTTTGC---------------------------------------------------------CTTCTTTGCTGTGAAGAGGGAGAGAGAGATAGAATGCGAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GGGAAAATTTGTTTTTGAAGCCCTTACGGTGGTACGACACTAGGCTTTGCCACTAACCATACAGTATATATACTGTATATACTGTATGGTTAGTGGCTTTGCCTTCTCTTCTGTGCTGTGAAGAGGGAGAGAGAGATAGAATGCGAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................TACTGTATGGTTAGTGGCTTTG...............................................22116.001601100102110
...............................................................................TACTGTATGGTTAGTGGCTTT................................................2114.0040210001000
...............................................................................TACTGTATGGTTAGTGGCTTTGC..............................................2313.0030201000000
................................................................................ACTGTATGGTTAGTGGCTTTG...............................................2112.0020100001000
............................................................................ATATACTGTATGGTTAGTGGCT..................................................2221.5030120000000
.........................................................................TGTATATACTGTATGGTTAGTGGC...................................................2411.0010100000000
.....................................................................................ATGGTTAGTGGCTTTGCCTTC..........................................2111.0010100000000
..................................................................................................................GCTGTGAAGAGGGAGAGAG...............1911.0010100000000
...............................................................................TACTGTATGGTTAGTGGCTTTT...............................................2211.0010000010000
..............................................................................ATACTGTATGGTTAGTGGCTT.................................................2111.0010010000000
................................................................................ACTGTATGGTTAGTGGCTTTGC..............................................2211.0010100000000
..............................................................................ATACTGTATGGTTAGTGGCTTTT...............................................2311.0010000100000
..............................................TTGCCACTAACCATACAGTATA................................................................................2220.5010100000000
............................................................................ATATACTGTATGGTTAGTGGC...................................................21140.4360100021011
..............................................................................ATACTGTATGGTTAGTGGCT..................................................2030.3310100000000
.............................................................................TATACTGTATGGTTAGTGGCT..................................................2130.3310000010000
..............................................................................ATACTGTATGGTTAGTGGC...................................................19200.2550500000000
............................................................................ATATACTGTATGGTTAGTGGCTG.................................................23120.1720200000000
.............................................................................TATACTGTATGGTTAGTGGC...................................................20200.0510000100000
droPer2
GGGAACATTTGTTTTTGAAGCCCTTACGGTGGTACGACACTAGGCTTTGC---------------------------------------------------------CTTCTTTGCTGTGAAGAGGGAGAGAGAGATAGAATGCGAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/15/2015 at 02:37 PM