ID:

dps_1201

 Coordinate:

3:13453945-13454095 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -13.0 -12.8 -12.7

Flybase annnotation

CDS [Dpse\GA15034-cds]; exon [dpse_GLEANR_16028:4]; intron [Dpse\GA15034-in]

Repeatable elements

NameClassFamilyStrand
Helitron-1N1_DVirRCHelitron+
Hopers2DNAhAT-hobo-
mature
  1. Unknown_group_4:124055-124075 +
  2. XL_group1e:1123703-1123723 +
  3. XR_group5:63903-63923 +
  4. Unknown_group_50:1993-2013 +
  5. 3:222283-222303 +
  6. dps_1201  3:13454016-13454036 +
  7. 2:28936754-28936774 +
  8. XL_group3a:1753688-1753708 +
  9. XL_group1a:46705-46725 +
  10. XL_group1a:581373-581393 +
  11. Unknown_group_71:21551-21571 +
  12. Unknown_singleton_2190:1771-1791 +
  13. Unknown_group_175:940-960 +
  14. Unknown_singleton_2264:821-841 +
  15. Unknown_singleton_3770:1653-1673 +
  16. Unknown_group_838:1283-1303 +
  17. Unknown_singleton_3068:3598-3618 +
  18. Unknown_group_290:6381-6401 +
  19. Unknown_singleton_2:2849-2869 +
  20. Unknown_singleton_771:59-79 +
  21. Unknown_group_233:884-904 +
  22. Unknown_group_8:194248-194268 +
  23. Unknown_group_111:21034-21054 +
  24. Unknown_group_50:14514-14534 +
  25. Unknown_group_52:12258-12278 +
  26. Unknown_group_783:5445-5465 +
  27. Unknown_group_447:9504-9524 +
  28. 2:23940032-23940052 +
  29. 2:30657114-30657134 +
  30. Unknown_group_223:8020-8040 +
  31. 4_group3:10618351-10618371 +
  32. 4_group4:1726125-1726145 +
  33. Unknown_group_845:458-478 +
  34. XL_group1a:715624-715644 +
  35. Unknown_singleton_727:1255-1275 +
  36. Unknown_group_346:1264-1284 +
  37. Unknown_group_594:8618-8638 +
  38. Unknown_group_523:3053-3073 +
  39. Unknown_group_523:4195-4215 +
  40. Unknown_group_87:1616-1636 +
  41. Unknown_group_8:3434-3454 +
  42. Unknown_group_563:127449-127469 +
  43. Unknown_group_320:11742-11762 +
  44. Unknown_group_50:16846-16866 +
  45. Unknown_group_52:10174-10194 +
  46. Unknown_group_222:7963-7983 +
  47. 4_group1:2850743-2850763 +
  48. Unknown_group_369:7811-7831 +
  49. Unknown_singleton_93:1131-1151 +
  50. Unknown_group_397:2081-2101 +
  51. Unknown_singleton_2890:255-275 +
  52. Unknown_singleton_2434:937-957 +
  53. Unknown_group_332:10519-10539 -
  54. 4_group5:1785963-1785983 -
  55. Unknown_singleton_2063:5699-5719 -
  56. Unknown_group_272:1775-1795 -
  57. Unknown_group_123:11944-11964 -
  58. 3:120912-120932 -
  59. 3:3131266-3131286 -
  60. 4_group1:267226-267246 -
  61. 4_group1:267934-267954 -
  62. Unknown_group_278:2491-2511 -
  63. 4_group4:5440754-5440774 -
  64. Unknown_group_669:1269-1289 -
  65. Unknown_group_669:2258-2278 -
  66. Unknown_singleton_1602:173-193 -
  67. Unknown_group_55:18100-18120 -
  68. Unknown_group_569:164-184 -
  69. Unknown_singleton_1686:1708-1728 -
  70. Unknown_singleton_1060:295-315 -
  71. Unknown_singleton_2439:2877-2897 -
  72. Unknown_singleton_1217:457-477 -
  73. Unknown_group_4:73419-73439 +
  74. Unknown_group_43:53600-53620 +
  75. Unknown_group_139:25926-25946 +
  76. Unknown_singleton_2895:1314-1334 +
  77. 4_group5:1599520-1599540 +
  78. 2:3498607-3498627 +
  79. 2:26928455-26928475 +
  80. Unknown_singleton_348:2320-2340 +
  81. Unknown_group_22:26906-26926 +
  82. 4_group4:6524368-6524388 +
  83. XR_group6:8402343-8402363 +
  84. XL_group1a:486045-486065 +
  85. XL_group1a:3170269-3170289 +
  86. Unknown_group_57:32004-32024 +
  87. Unknown_group_175:11364-11384 +
  88. Unknown_group_567:780-800 +
  89. Unknown_singleton_1862:1777-1797 +
  90. Unknown_singleton_3764:957-977 +
  91. Unknown_singleton_757:1534-1554 +
  92. Unknown_singleton_4002:1084-1104 +
  93. Unknown_group_332:12853-12873 +
  94. Unknown_singleton_3883:2147-2167 +
  95. 4_group5:1788645-1788665 +
  96. Unknown_group_80:23158-23178 +
  97. Unknown_singleton_1629:371-391 +
  98. Unknown_singleton_2278:502-522 +
  99. Unknown_singleton_2278:5851-5871 +
  100. Unknown_group_222:3306-3326 +
  101. 2:14783100-14783120 +
  102. 2:17425187-17425207 +
  103. 2:18370053-18370073 +
  104. 2:22475897-22475917 +
  105. 2:28480183-28480203 +
  106. XL_group3a:1565038-1565058 +
  107. XL_group3a:1907578-1907598 +
  108. 4_group4:5453973-5453993 +
  109. XL_group1a:4947842-4947862 +
  110. XL_group1a:7543541-7543561 +
  111. Unknown_singleton_1555:1029-1049 +
  112. Unknown_singleton_1391:1857-1877 +
star
  1. Unknown_group_304:1513-1539 +
  2. Unknown_group_7:22590-22616 +
  3. Unknown_group_159:13058-13084 +
  4. Unknown_group_37:3775-3801 +
  5. 3:2150322-2150348 +
  6. 3:2380293-2380319 +
  7. dps_1201  3:13454047-13454073 +
  8. 3:17534900-17534926 +
  9. 2:3807184-3807210 +
  10. 2:4411477-4411503 +
  11. 2:26928486-26928512 +
  12. 2:28417915-28417941 +
  13. XL_group3a:2690430-2690456 +
  14. 4_group1:2850774-2850800 +
  15. Unknown_group_22:1941-1967 +
  16. XL_group1a:223108-223134 +
  17. Unknown_group_57:32035-32061 +
  18. Unknown_group_369:7842-7868 +
  19. Unknown_singleton_1038:1314-1340 +
  20. Unknown_singleton_3770:1684-1710 +
  21. Unknown_singleton_348:2351-2377 +
  22. Unknown_singleton_3764:988-1014 +
  23. Unknown_singleton_4002:1115-1141 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTGCCTCAACATGCTGGTGGGCCTGGGGAAGAAGGGTCTCTGCTGTGTGTGTAAGTATCCCTCCCTCCGTCACTGTTTTTTTATAGCCGATACTCAAAATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTCCGTCTGT
*************************************************************************************************************************((..(((.....(((((((.....)))))))................))).....)).************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 GSM444067
head
 M062
head
 M059
embryo
 GSM343916
embryo
 M022
male body		 SRR902012
CNS imaginal disc
.........................................................................................................................TTGTGGTAAAAGTGGATGTGT............................................................................................................. 21 0 20 9.30 186 186 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGTGGTAAAAGTGGATGTGTG............................................................................................................ 22 0 20 3.70 74 0 74 0 0 0 0 0 0 0 0
........................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAAAG........................................................................ 27 0 20 3.10 62 51 5 0 6 0 0 0 0 0 0
...............................................................................................................................................................................................TGATCAGCATCAATAGCCGA........................................ 20 0 20 1.90 38 38 0 0 0 0 0 0 0 0 0
............................................................................................................................TGGTAAAAGTGGATGTGTGTA.......................................................................................................... 21 0 20 1.85 37 0 0 37 0 0 0 0 0 0 0
..........................................................................................................................TGTGGTAAAAGTGGATGTGTGTAACG....................................................................................................... 26 0 20 1.75 35 30 0 5 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGATTGAGCCCTGTCTGTCTG................. 21 0 20 1.65 33 33 0 0 0 0 0 0 0 0 0
......................................................................................................................GATTTGTGGTAAAAGTGGATG................................................................................................................ 21 0 20 1.40 28 28 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TCCAGAAGGAATCGTTTCCGACC................................................................................ 23 0 20 1.30 26 26 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGTGGTAAAAGTGGATGTGTGTAA......................................................................................................... 24 0 20 1.10 22 15 0 0 7 0 0 0 0 0 0
....................................................................................................................TAGATTTGTGGTAAAAGTGGA.................................................................................................................. 21 0 20 1.10 22 22 0 0 0 0 0 0 0 0 0
.........................GTGAAGAAGGGTCTCGGCT............................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATATATATTCTTGATCAGCAT.................................................. 21 0 20 0.95 19 19 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATTGAGCCCTGTCTGTCTGTC............... 21 0 20 0.55 11 11 0 0 0 0 0 0 0 0 0
...............................................................................................................................TAAAAGTGGATGTGTGTAACG....................................................................................................... 21 0 20 0.55 11 0 0 11 0 0 0 0 0 0 0
........................................................................................................................TTTGTGGTAAAAGTGGATGTGTGTAACG....................................................................................................... 28 0 20 0.50 10 0 0 0 10 0 0 0 0 0 0
.................................................................................................................................................................................................................GAGTCGATTGAGCCCTGTCT...................... 20 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0
......................................................................................................................GATTTGTGGTAAAAGTGGA.................................................................................................................. 19 0 20 0.45 9 0 0 0 9 0 0 0 0 0 0
.......................................................................................................................ATTTGTGGTAAAAGTGGATGTGTG............................................................................................................ 24 0 20 0.40 8 8 0 0 0 0 0 0 0 0 0
.................................................................................................................................AAAGTGGATGTGTGTAACGT...................................................................................................... 20 0 20 0.40 8 8 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCCGT........ 21 0 20 0.35 7 7 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTCC.......... 24 0 20 0.35 7 6 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCCG......... 20 0 20 0.35 7 7 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTGTCTGTCCGTCCGTCCGTC... 21 0 20 0.35 7 7 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTCCG......... 25 0 20 0.35 7 7 0 0 0 0 0 0 0 0 0
.......................TGGGGAAGTAGGGTGTCT.................................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................AGCCGAGTCGATTGAGCCCTG......................... 21 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTCTGTCTGTCCGTCCGTCC...... 20 0 20 0.30 6 6 0 0 0 0 0 0 0 0 0
.........................GGGAAGAAGGGTTTCGGCTC.............................................................................................................................................................................................................. 20 3 11 0.27 3 0 0 0 0 0 2 1 0 0 0
...............................................................................................................................................................TCGTTTCCGACCCTATAAAGTATATA.................................................................. 26 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0
.............................................................................................................GGTATATTAGATTTGTGGTAA......................................................................................................................... 21 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTGTGGTAAAAGTGGATGTG.............................................................................................................. 21 0 20 0.25 5 0 0 0 0 5 0 0 0 0 0
...................................................................................................TGAGTATTGGGGTATATTAGATTTG............................................................................................................................... 25 0 20 0.25 5 4 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................AAGGAATCGTTTCCGACCCTATAAAG........................................................................ 26 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTCTGTCTGTCCGTCCGTCCG..... 21 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTGTGGTAAAAGTGGATGTGA............................................................................................................. 22 1 20 0.20 4 0 4 0 0 0 0 0 0 0 0
.....................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCT.............................................................................. 24 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
......................................................................................................GTATTGGGGTATATTAGATTT................................................................................................................................ 21 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TGTGTGTAACGTCCAGAAGGAAT........................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................TCTGTCCGTCCGTCCGTCTG. 20 0 20 0.15 3 0 0 2 0 0 0 0 1 0 0
..................................................................................................................................................................TTTCCGACCCTATAAAGTATAA................................................................... 22 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0
...................................................................................................................................................................TTCCGACCCTATAAAGTATATATATT.............................................................. 26 0 20 0.15 3 0 3 0 0 0 0 0 0 0 0
........................................................................................GATACTCAAAATGAGTATTGGGG............................................................................................................................................ 23 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAAGGAATCGTTTCCGACCCT.............................................................................. 21 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAA.......................................................................... 25 0 20 0.15 3 0 1 0 0 0 0 2 0 0 0
................................................................................................................................AAAAGTGGATGTGTGTAGCGT...................................................................................................... 21 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0
........................................................................................................................TTTGTGGTAAAAGTGGATGT............................................................................................................... 20 0 20 0.15 3 0 0 0 0 3 0 0 0 0 0
...............................................................................................................................................................TCGTTTCCGACCCTATAAAGTATATAT................................................................. 27 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTC..................................... 26 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..........................................................................................TACTCAAAATGAGTATTGGGGTATAT....................................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CAATAGCCGAGTCGATTGAG.............................. 20 0 20 0.15 3 0 0 0 3 0 0 0 0 0 0
.........................GGGAAGAAGGGTTTCGGCT............................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0
........................GGTGAAGAAGGGTTTCGGCT............................................................................................................................................................................................................... 20 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAAGGAATCGTTTCCGACCCTATA........................................................................... 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................AAGTGGATGTGTGTAACGT...................................................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AAGGAATCGTTTCCGACCCTATA........................................................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................TGGTAAAAGTGGATGTGTGTAA......................................................................................................... 22 0 20 0.10 2 0 0 0 2 0 0 0 0 0 0
.........................GTGAAGAAGGGTCTCGGCTC.............................................................................................................................................................................................................. 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0
..............TGGTGGGGCTGGGGAATA........................................................................................................................................................................................................................... 18 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TATATATTCTTGATCAGCAT.................................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AATCGTTTCCGACCCTATAAA......................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAAGGAATCGTTTCCGACCCT.............................................................................. 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTGTGGTAAAAGTGGATGTG.............................................................................................................. 20 0 20 0.10 2 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................ATTTGTGGTAAAAGTGGA.................................................................................................................. 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................GTGTAACGTCCAGAAGGAATCGT........................................................................................ 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................ATTAGATTTGTGGTAAAAGTGGATG................................................................................................................ 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................ATACTCAAAATGAGTATTGGGGT........................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CATCAATAGCCGAGTCGATTG................................ 21 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTCCGT........ 22 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.........................GCGAAGAAGGGTTTCGGCT............................................................................................................................................................................................................... 19 3 20 0.10 2 0 0 1 0 1 0 0 0 0 0
.........................................................................................................TTGGGGTATATTAGATTTGT.............................................................................................................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTGTCTGTCCGTCCGTCCG..... 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAG.............................. 27 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GAGTCGATTGAGCCCTGT........................ 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.........................GTGAAGAAGGGTTTCGGCTG.............................................................................................................................................................................................................. 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGTGCCCTGTCTGTCTGTCCGTCC.......... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................GTATATTAGATTTGTGGTAAAAGTGGAT................................................................................................................. 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................AGGAATCGTTTCCGACCCTA............................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATTTGTGGTAAAAGTGGATGTGTGT........................................................................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCTA............................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GAAGGAATCGGTTCCGACCCT.............................................................................. 21 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................TCGTTTCCGACCCTATAAAGTAT..................................................................... 23 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................................TGTCTGTCCGTCCGTCCGTCTG. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................AAAAGTGGATGTGTGTAACG....................................................................................................... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................AAGGAATCGTTTCCGACCCTATAAAGA....................................................................... 27 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................GAGTCGATTGAGCCCTGTCTG..................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AGCCCTGTCTGTCTGTCCGTC........... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................GTGAAGAAGGGTTTCGGCT............................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................TCAAAATGAGTATTGGGGTAT......................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGCCC........................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................GTCGATTGAGCCCTGTCTGTCTGTC............... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCGTTTCCGACCCTATAAAGT....................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................GCCGAGTCGATTGAGCCCT.......................... 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTC........... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGT............ 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................TCCAGAAGGAATCGTTTCCG................................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAAAGA....................................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGAAGGAATCGTTTCCGACCCTAT............................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATATTCTTGATCAGCATCAA............................................... 21 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................AATCGTTTCCGACCCTATAAAGT....................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GCCCTGTCTGTCTGTCCGTC........... 20 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................TTAGATTTGTGGTAAAAGTGG................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGATT................................. 28 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................TTCCGACCCTATAAAGTATATATAT............................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGAGTCGATTGAGCCCTGTCTGTCT.................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGGGTATATTAGATTTGTGGT........................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................GTCGATTGAGCCCTGTCTGTCTGT................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCG......................................... 24 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................AGATTTGTGGTAAAAGTGGATGTG.............................................................................................................. 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTGTGGTAAAAGTGGATGTGTGTAACG....................................................................................................... 27 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTCCGTC....... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCCGTC....... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................GTCCAGAAGGAATCGTTTCCGACCCT.............................................................................. 26 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................GAAGAAATCGTTTCCGACCCTATAA.......................................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................CGATTGAGCCCTGTCTGTC................... 19 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................CGTTTCCGACCCTATAAAGTATAT................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TATTAGATTTGTGGTAAAAGTGGATG................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCGTTTCCGACCCTATAAAGTA...................................................................... 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................AGGAATCGTTTCCGACCCTAT............................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAGCCCTGTCTGTCTGTCCGTCC.......... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGTCTGTCTGTCCGTCCGTCCGT.... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TATATTCTTGATCAGCAT.................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTGGTAAAAGTGGATGTGTG............................................................................................................ 20 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGC............................. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................TTTGTGGTAAAAGTGGATGTGTGT........................................................................................................... 24 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................TCGATTGAGCCCTGTCTGTCTGTC............... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCCTGTCTG..................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATTCTTGATCAGCATCAATA............................................. 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................TCGTTTCCGACCCTATAAA......................................................................... 19 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CACGGAGTTGTACGACCACCCGGACCCCTTCTTCCCAGAGACGACACACACATTCATAGGGAGGGAGGCAGTGACAAAAAAATATCGGCTATGAGTTTTACTCATAACCCCATATAATCTAAACACCATTTTCACCTACACACATTGCAGGTCTTCCTTAGCAAAGGCTGGGATATTTCATATATATAAGAACTAGTCGTAGTTATCGGCTCAGCTAACTCGGGACAGACAGACAGGCAGGCAGGCAGACA
************************************************************************((..(((.....(((((((.....)))))))................))).....)).************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 V112
male body		 M022
male body
...............................................................................................................................................ATTGCAGGTCTTCCTTAGCAAAGGCT.................................................................................. 26 0 20 2.25 45 0 45 0 0 0 0 0
....................................................TTCACAGGGAGGGCGGCAG.................................................................................................................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0
....................................................TTCACAGGGAGGGCGGCAGTC.................................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................ACACACATTGCAGGTCTTCCTTAGC......................................................................................... 25 0 20 0.45 9 0 9 0 0 0 0 0
.............................................................................................................................................................................................................................GGGACAGACAGACAGGCAGGCA........ 22 0 20 0.40 8 0 0 8 0 0 0 0
.................................................................................................................................................................................................................................CAGACAGACAGGCAGGCAGGC..... 21 0 20 0.35 7 0 0 7 0 0 0 0
........................................................TAGGGAGGGAGGCTGTGAA................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 1 0 0
........................................................................................................TAACCCCATATAATCTAAACACCATT......................................................................................................................... 26 0 20 0.20 4 0 0 0 4 0 0 0
....................................................................................................................................................................................TATATATAAGAACTAGTCGT................................................... 20 0 20 0.15 3 0 0 3 0 0 0 0
.....................................................................................................................................................................GGCTGGGATATTTCATATATAT................................................................ 22 0 20 0.15 3 1 0 2 0 0 0 0
............................................................................................................................................CACATTGCAGGTCTTCCTTAGCAAAGGCT.................................................................................. 29 0 20 0.15 3 0 3 0 0 0 0 0
............................................................................................................................................CACATTGCAGGTCTTCCTTAGC......................................................................................... 22 0 20 0.10 2 0 2 0 0 0 0 0
..................................................................................................................................................................................................................................AGACAGACAGGCAGGCAGGCA.... 21 0 20 0.10 2 2 0 0 0 0 0 0
..........................................................................................................................................................TCCTTAGCAAAGGCTGGGATAT........................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0
.......................................................................................................................................................................ATGGGATATTTCATATATATAAGAACT......................................................... 27 1 20 0.10 2 2 0 0 0 0 0 0
..........................................................................................................ACCCCATATAATCTAAACACCATT......................................................................................................................... 24 0 20 0.10 2 0 0 0 2 0 0 0
...........................................................................................................................................................CCTTAGCAAAGGCTGGGATAT........................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0
.......................................................................................................................................................TCTTCCTTAGCAAAGGCTG................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0
.....................................................................AGTGACTAGACAATATCGG................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................AGACAGGCAGGCAGGCAGA.. 19 0 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................ACACCATTTTCACCTACACAC............................................................................................................ 21 0 20 0.05 1 0 0 0 0 0 1 0
............................................................................................................................................................................................................................CGGGACAGACAGACAGGCAG........... 20 0 20 0.05 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................GACAGACAGACAGGCAGGCAGG...... 22 0 20 0.05 1 0 0 0 1 0 0 0
......................................................................................................CATAACCCCATATAATCT................................................................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0 0
...........................................................................................................................CACCATTTTCACCTACACACAT.......................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................................................CATATATATAAGAACTAGTCGTAGT................................................ 25 0 20 0.05 1 0 0 1 0 0 0 0
...............................................................................................................................................ATTGCAGGTCTTCCTTAGCAA....................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................ATATATAAGAACTAGTCGTA.................................................. 20 0 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................................AAACACCATTTTCACCTACACAC............................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGGACAGACAGACAGGCAGGC......... 21 0 20 0.05 1 0 0 0 0 1 0 0
........................................................................................................................................................................................TATAAGAACTAGTCGTAGTTA.............................................. 21 0 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................TCACCTACACACATTGCAGGTCTTC............................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CGGCTCAGCTAACTCGGGAC......................... 20 0 20 0.05 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................GACAGACAGACAGGCAGGCAGGC..... 23 0 20 0.05 1 0 0 1 0 0 0 0
.................................................................................................................................................TGCAGGTCTTCCTTAGCAAAGGCTGGGAT............................................................................. 29 0 20 0.05 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................CTCGGGACCGACAGACAGGCA............ 21 1 20 0.05 1 0 0 0 0 0 0 1
..............................................................................................................................................CATTGCAGGTCTTCCTTAGCAAAGGCT.................................................................................. 27 0 20 0.05 1 0 0 0 0 0 0 1
.........................................................................................................................................................................GGTATATTTCATATATATAAGAACTAGT...................................................... 28 1 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:13453895-13454145 + dps_1201 GTGCC--TCAAC------------------------------ATGCTGGT---GG--------GCCTGGGGAAGAAGGG----------------TCTCTGC-----------------------------------------------------------TGTGTGTGT------------------------AA----GTA---TCCCTC---------------CCTCCGTCA------------------CT------G-------TTTTTT------TATAGCCGATACTCAAA----ATGAG-T--ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTA-----ACGTCCAGAAGGAATCGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTCCGTCTGT--------
droPer2 scaffold_3009:2583-2833 + GCCCCAG--GC--------------------------------TGCTGGTATAGCTGTGGT-----TGGGGGG-CGT-G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------AT------GCCCACGAGTTTTT------TATACCCGATACTCAAA----ATGAG-T--ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTA-----ACGTCCAGAAGGAATCGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTCCGTCTGT--------
droWil2 scf2_1100000006858:310-551 + GCGCCAGTTAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGAGGAAAAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATTTACTTTTTA------------------G-------TATTTT------TATACCATACACCCATA------GGG-T--GAAATGGTATATTAAAGTCGCCAA-------AATGTATGTA-----ACAGGCAGAAGGAAGCATCTCCGACCCCACAA------AGT--ATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGT--------
droVir3 scaffold_12726:365271-365512 - TTGAC--GAAAT------------------------------GTGCTCTT---G--------------------------------------------------------------------------------TATTTG--------GCATAGGGTATCT------------------------------------------------GCCAGT----CAGTGTGG----TA-------------------TT---TCATAT-------TTTTAT------CATATCCTGAGCCCATTTAAAATGGG-T--ATAAGGGCATATTGTATTTGTGCGAAATCCAAATGTATGTA-----ACAGGCAGAAGGAAGCATCTCCGACCCCATAA------AAT--ATATATATTCTTGATCAGCATCAATAGCCGAGTCGATCTACCCATGTCCGTCGGTCTGTCCGTCCGTCCGT--------
droMoj3 scaffold_6496:26817366-26817617 + ATGCGTGTTTAT------------------------------GCGTGGGT-------------GCTTGTGTG-----------------------------------------------------------------------------------------TGTATGTGT--TTCTGTATGTGTGTGTATGTGTTTGCAATAA---TTACTG---------------AAT--------------------------------T-------CATTTT------TATACCCTGAACCCATTGAAAATGGGAA--ATCAGGGTATAATGGTTTTG-TGA-------AAAGTATGTA-----ACAGGCAGAAGGAATCATCGCAGACCCCATAA------AGT--ATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCGTCCGT--------
droGri2 scaffold_15110:601963-602169 - GTGCTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTAG----------------------------AAT---C---------------------TTTTGTT-------------------AT------G-------CGTTTT------TATACCCTGAACCCATTGATAATGGGTA--AAAAGGGTATAATGGGTTTGTGCA-------AATGTATATA-----AGAGGCAGAAGGAAGCATCTCCGACCCCATAA------AGT--ATATATATTATTGATCAGGGTCAACAGTCGAGTCGATATAGCCATGTCCGTCCGTCCGTCCGTCTGTCTGT--------
droAna3 scaffold_13266:19335811-19336033 - TGGAC------------------------------------------------------------GTGAAGAAGAAGAA----------------TATTTTG--------------------------------TATATT--------------------------ATGT------------------------AA----AAT---TTTGTA---------------CACCTATAT------------------G---AAATT-------TTTTATTACAAAAATA-CCTT-----GC---------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCA-----ACGCAGTGAAGGAGACATCTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCCGTTTCT--------
droBip1 scf7180000395957:3546-3759 - TGGTG-------------------------------------------------G--------AC-----GAAGAAGG------------------------------------TTAGTC----------CGCGATTCCG---A-----TA--------------TAGGG------------------------AA----GTTTCAC--TC----------------CCAC-----TG------------------------G-------TTTTTT------TATACCCTT-----GC---------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCA-----ACGCAGTGAAGGAGACATCTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAAGCATGTCCGTCTGTCCGTCTGTCCGTCTGT--------
droKik1 scf7180000302619:109601-109805 + ACATG----------------------------------------CCTGT---GG--------GCCA--AATG-TGG-G-----------------------------------C--TTC-------CTCAT-----------------------------TGTGTGTGC-----------------------------------------------------------TTAGTC-------------------AC------A-------TATATT------TATACCCTT----------------------GCAGGGTATTATAATTTCAGTCA-------GAAGTTTGCA-----ACGCAGTGAAGGAGACGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCTGTCTGT--------
droFic1 scf7180000451611:640-858 + CTGGTGCGCATA---------------------------GGTGTGCC-----------------------------------------------------------------------------------GCTGCAGTTGCATATTTGTAA-------------------------------------------------TC-------CGC---------------TCTTCAAGCC------------------T------C-------TCTTTT------TATACCCTT-----GCA------GAG-C--A-AAGGGTATTATAATTTTGGCCA-------GAAGTTTGCA-----ACGCAGTGAAGGAGACACCTCAGACCCCATAA------AGT--ATATATATTCTTGATCAGCATCACGATCTGAGTCGAAATACGTCTGTCCGTCTGTCCGTCTGTCCGTCTGT--------
droEle1 scf7180000491255:2876531-2876749 + TGATG-------------------------------------------------G--------ACCG--TAGG-AGGG------------------------------------TTTTCC----------TTTGTCTTTG---ATTTGGCA---------------------------------------------------C---CG-------------------CCTTCGTCT------------------CTTTTCTCT-------TTTTTT------TATACCCTT-----GC---------------AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCA-----ACGCAGTGAAGGAGACATCTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGT--------
droRho1 scf7180000777405:81057-81285 + AACATTG--GC-TTGTAGGGCCCTCAAAGCGAAGGGTTCGATGTGC------------------------TAA------------------------------------------------------------------------------------------------A------------------------AA----GTT---TC--CC---------------CTT------TC------------------------G-------GCTCAT------TATACCCGTTACTCGTA------GAG-T--AAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTA-----ACAGCTAGAAGGAAGCGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGT--------
droBia1 scf7180000302386:230740-230962 - AAGCAACTCAAC------------------------------GTGTTCGT---GCGGCTGCCGAACC-------------------------------------------------------------TCGG-----------------------------TATGTGTGTGG------------------------------------------------------------------------------------------T-------ACTTGT------TATAGCCGTTACTCGTG------GAG-T--AAAAGGATATACTAAATTCGATGG-------GAAAGATGTA-----ACACGCAGAAAGAAGCGTTTCCGACCCCATAAAGCAAAAGT--ATTTATATTCTTAATTAGGATCACTAGCCAAGTCGATTTAGCCATATCCGTCTATCCGTCTGTCCGTTCGT--------
droTak1 scf7180000415877:170714-170963 + GTGCC--TCATC---------------------------GATGTG--GAG----G--------ACGTGGCCG-------AGGCCATGGCGCTTCA-----GCAGTGCGG--------------------------------------------------CT------------------------------------------------GCCAGTTCTGCATCGAGG----TA-------------------AG---TC---C-------CATTTT------TATACCCGTTACTCGTA------GAG-T--ACAAGGGTATATTGTATTCGTTCA-------AAAGTATGTA-----ACAGCTAGAAGGAAGCGTTTCCGACCCCATAA------AGTGTATATATGCTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCGTCTATCCGACTATCCGTCTGT--------
droEug1 scf7180000409768:1172245-1172453 + AGACGGGT----------------------------------------------------------------------------------------TCTTTC-----------------------------------------------------------CGTTTCGGT------------------------CAGC---AATCTTTG------------------CCTTGG-----------------------------T-------TCTTTT------TATACCCGTTACTCGTA------GAG-T--AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTA-----ACAGATAGAAGGAAGCTTTTGCGACCCTATAA------AGT--ATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGT--------
dm3 chr3RHet:1129830-1130060 - GTACC--AAAAC------------------------------GTGTCCAA---AAGGTGATAGACGC--TAAGGAAGGG----------------TATAT----------------------------------------------------------------------------------------------------------T--G-------------------TTTATTAATTTTTTATAATTTGTAGT---C---G-------ATTTTT------TATACCCGTTAATCGTT------TAG-T--AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTA-----GCAGGAAGATGGAAGCGTTTCCGACTATATAA------AGT--ATATATATTCTCGATCAGGATCAATAGCCAAATCGATCTAGCCATGTCCGTCTGGCCG---------------------
droSim2 4:58240-58442 + AAGGA------------------------------------------------------------------------------------------TTCCTTC-----------------------------TAGCTGTTGCATACT--------------------------------------------------------TCTAT--T-------------------TTTATTAA------------------T------T-------TTCTTT------TATAATATTTGATAATA------CAG-TTTAGATATATATACTAGATTCGTTGA-------AAAGTATGTA-----ACAGGCAGAAGAAAGCGTTTCCGACTATATAA------AGT--ATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGCTCGTCTGTCCGTATG-----------------
droSec2 scaffold_46:263210-263406 - TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAG----------------------------TTC---T---------------------TTCTATTCTTGTTTTATTAC-----------------------------------TTGTTTGTTGCTCGTA------GAG-T--ACAGGGGTACACTAGATTCGTTGA-------GAAGTATGTATGAGAACAGGCAGAAGGAAGCGTTTCTAACTATATAA------AGT--ATATATATTAATGATCAGGATCAATAGCCGAGTCGATCTGGCTATGTCCGTCTATCCGTATGAACGTC-----------
droYak3 v2_chrUn_2624:608-858 + CTGAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTCCAG-------CGGCAGCGGCGGCTCC-----GTGGTCCGACGGAGTTA--------------------------------------------------------------------------------------------------------------GCCCTAAGT---------------------TCCAGT-------TTTAAT------TATACCCGTTACTCGTA------GAG-T--AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTA-----ACAGGCAGAAGGAAGCGTTTCCGACCATATAA------AGT--ATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGTCCGT
droEre2 scaffold_4784:22573109-22573305 + TATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTAA----------------------------TAT---CACCTA---------------CAGCCATTT------------------AT------A-------TATAAT------TATACCCGTTACTCGTA-------AG-T--AAAAGGGTATACCAGATCCGGTGA-------AAAGTATGTA-----GCAGACATAAGAAAGCGTTTCCGACCATATAA------AGT--ATATATATTCTTGATCAGAATAAAAAGCCGAGTCGATATGGTCATGTCCATCTGTGCGTCCGTCCGTATG---------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTGCC--TCAAC------------------------------ATGCTGGT---GG--------GCCTGGGGAAGAAGGG----------------TCTCTGC-----------------------------------------------------------TGTGTGTGT------------------------AA----GTA---TCCCTC---------------CCTCCGTCA------------------CT------G-------TTTTTT------TATAGCCGATACTCAAA----ATGAG-T--ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTA-----ACGTCCAGAAGGAATCGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTCCGTCTGT--------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGT..................................................................................................................................21209.30186018600000000
.........................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTG.................................................................................................................................22203.707400000007400
.............................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAA------AG..................................................................................27203.106205100000560
............................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGCCGA................................................20201.903803800000000
............................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTA-----..........................................................................................................................21201.853700000037000
..........................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTA-----ACG.......................................................................................................................26201.753503000005000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCCTGTCTGTCTG.........................21201.653303300000000
......................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGGATG.....................................................................................................................................21201.402802800000000
.........................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCGACC................................................................................................23201.302602600000000
..........................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTA-----A.........................................................................................................................24201.102201500000070
....................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGGA.......................................................................................................................................21201.102202200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGCAT..........................................................21200.951901900000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGCCCTGTCTGTCTGTC.......................21200.551101100000000
...............................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTA-----ACG.......................................................................................................................21200.551100000011000
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGTA-----ACG.......................................................................................................................28200.501000000000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCCTGTCT..............................20200.501001000000000
......................................................................................................................................................................................................................................................................................................................................GATTTGTGGTAAAAGTGGA.......................................................................................................................................19200.4590000000090
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGTG.................................................................................................................................24200.4080800000000
.................................................................................................................................................................................................................................................................................................................................................AAAGTGGATGTGTGTA-----ACGT......................................................................................................................20200.4080800000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCCGT................21200.3570700000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTCC..................24200.3570600000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCCG.................20200.3570700000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCCGTCCGTCCGTC...........21200.3570700000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTCCG.................25200.3570700000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTGAGCCCTG.................................21200.3060600000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCCGTCCGTCC..............20200.3060600000000
....................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAA------AGT--ATATA..........................................................................26200.2550500000000
.............................................................................................................................................................................................................................................................................................................................GGTATATTAGATTTGTGGTAA..............................................................................................................................................21200.2550500000000
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTG...................................................................................................................................21200.2550000050000
................................................................................................................................................................................................................................................................................................................TGAG-T--ATTGGGGTATATTAGATTTG....................................................................................................................................................25200.2550410000000
..............................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCTATAA------AG..................................................................................26200.2040400000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCCGTCCGTCCG.............21200.2040400000000
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGA..................................................................................................................................22200.2040000000400
..........................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCT..............................................................................................24200.2040400000000
...................................................................................................................................................................................................................................................................................................................G-T--ATTGGGGTATATTAGATTT.....................................................................................................................................................21200.2040400000000
.........................................................................................................................................................................................................................................................................................................................................................TGTGTGTA-----ACGTCCAGAAGGAAT...........................................................................................................23200.1530300000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCCGTCCGTCTG.........20200.1530000102000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACCCTATAA------AGT--ATAA...........................................................................22200.1530000000030
........................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCCTATAA------AGT--ATATATATT......................................................................26200.1530000000300
.................................................................................................................................................................................................................................................................................................GATACTCAAA----ATGAG-T--ATTGGGG.................................................................................................................................................................23200.1530300000000
.............................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCT..............................................................................................21200.1530300000000
.............................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAA------....................................................................................25200.1530020000100
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGT....................................................................................................................................20200.1530000030000
....................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAA------AGT--ATATAT.........................................................................27200.1530300000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAATAGCCGAGTC.............................................26200.1530300000000
...................................................................................................................................................................................................................................................................................................TACTCAAA----ATGAG-T--ATTGGGGTATAT............................................................................................................................................................26200.1530300000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAG......................................20200.1530000000030
.............................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATA...........................................................................................24200.1020000000200
..................................................................................................................................................................................................................................................................................................................................................AAGTGGATGTGTGTA-----ACGT......................................................................................................................19200.1020200000000
..............................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCTATA...........................................................................................23200.1020200000000
............................................................................................................................................................................................................................................................................................................................................TGGTAAAAGTGGATGTGTGTA-----A.........................................................................................................................22200.1020000000020
..................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGCAT..........................................................20200.1020200000000
..................................................................................................................................................................................................................................................................................................................................................................................AATCGTTTCCGACCCTATAA------A...................................................................................21200.1020200000000
...........................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCT..............................................................................................23200.1020200000000
.........................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTG...................................................................................................................................20200.1020002000000
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGA.......................................................................................................................................18200.1020200000000
............................................................................................................................................................................................................................................................................................................................................................GTGTA-----ACGTCCAGAAGGAATCGT........................................................................................................23200.1020200000000
..................................................................................................................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTGGATG.....................................................................................................................................25200.1020000000200
..................................................................................................................................................................................................................................................................................................ATACTCAAA----ATGAG-T--ATTGGGGT................................................................................................................................................................23200.1020200000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATAGCCGAGTCGATTG........................................21200.1020000002000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTCCGT................22200.1020000000200
.........................................................................................................................................................................................................................................................................................................................TTGGGGTATATTAGATTTGT...................................................................................................................................................20200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCCGTCCGTCCG.............19200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATTGAG......................................27200.1020000002000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCCTGT................................18200.1020200000000
..............................................................................................................................................................................................................................................................................................................................GTATATTAGATTTGTGGTAAAAGTGGAT......................................................................................................................................28200.0510010000000
...............................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCTA.............................................................................................20200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGATGTGTGT................................................................................................................................25200.0510000001000
..........................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCGACCCTA.............................................................................................25200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAA------AGT--AT.............................................................................23200.0510010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTCCGTCCGTCTG.........22200.0510100000000
................................................................................................................................................................................................................................................................................................................................................AAAAGTGGATGTGTGTA-----ACG.......................................................................................................................20200.0510000010000
..............................................................................................................................................................................................................................................................................................................................................................................AAGGAATCGTTTCCGACCCTATAA------AGA--...............................................................................27200.0510000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGCCCTGTCTG.............................21200.0510000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCTGTCTGTCTGTCCGTC...................21200.0510000100000
......................................................................................................................................................................................................................................................................................................TCAAA----ATGAG-T--ATTGGGGTAT..............................................................................................................................................................21200.0510000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATTGAGCCC...................................24200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCCCTGTCTGTCTGTC.......................25200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAA------AGT--...............................................................................21200.0510001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGCCCT..................................19200.0510000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGTC...................23200.0510000000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCCTGTCTGTCTGTCCGT....................22200.0510000010000
.........................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCG...................................................................................................20200.0510000100000
.............................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCCTATAA------AGA--...............................................................................28200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................CAGAAGGAATCGTTTCCGACCCTAT............................................................................................25200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAA.......................................................21200.0510000010000
..................................................................................................................................................................................................................................................................................................................................................................................AATCGTTTCCGACCCTATAA------AGT--...............................................................................23200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTCTGTCTGTCCGTC...................20200.0510000010000
...................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTGG........................................................................................................................................21200.0510001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGATT.........................................28200.0510010000000
........................................................................................................................................................................................................................................................................................................................................................................................TTCCGACCCTATAA------AGT--ATATATAT.......................................................................25200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATTGAGCCCTGTCTGTCT..........................25200.0510100000000
..........................................................................................................................................................................................................................................................................................................................TGGGGTATATTAGATTTGTGGT................................................................................................................................................22200.0510000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATTGAGCCCTGTCTGTCTGT........................24200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGCCG.................................................24200.0510010000000
.....................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTAAAAGTGGATGTG...................................................................................................................................24200.0510000000100
.........................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGTA-----ACG.......................................................................................................................27200.0510000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCTGTCTGTCTGTCCGTCCGTC...............23200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCCGTC...............22200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCCGACCCT..............................................................................................26200.0510000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTGAGCCCTGTCTGTC...........................19200.0510001000000
.....................................................................................................................................................................................................................................................................................................................................................................................CGTTTCCGACCCTATAA------AGT--ATAT...........................................................................24200.0510100000000
.................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGTGGATG.....................................................................................................................................26200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAA------AGT--A..............................................................................22200.0510000000010
...............................................................................................................................................................................................................................................................................................................................................................................AGGAATCGTTTCCGACCCTAT............................................................................................21200.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCCTGTCTGTCTGTCCGTCC..................23200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCTGTCCGTCCGTCCGT............23200.0510100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCAT..........................................................18200.0510100000000
...........................................................................................................................................................................................................................................................................................................................................GTGGTAAAAGTGGATGTGTG.................................................................................................................................20200.0510000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTGAGC.....................................21200.0511000000000
........................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGTGTGT................................................................................................................................24200.0510001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATTGAGCCCTGTCTGTCTGTC.......................24200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTGAGCCCTGTCTG.............................26200.0510000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATA.....................................................20200.0510000001000
....................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCTATAA------A...................................................................................19200.0510000000100
droPer2
GCCCCAG--GC--------------------------------TGCTGGTATAGCTGTGGT-----TGGGGGG-CGT-G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------AT------GCCCACGAGTTTTT------TATACCCGATACTCAAA----ATGAG-T--ATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTA-----ACGTCCAGAAGGAATCGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTGTCCGTCCGTCCGTCTGT--------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................TAAAAGTGGATGTGTGTA-----ACGT......................................................................................................................22201.35270000027
...........................................TGCTGGTATAGCTGTGGT-----TGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................23120.425050000
...........................................TGCTGGTATAGCTGTGGT-----TGG...........................................................................................................................................................................................................................................................................................................................................................................................................................21120.334030001
....................................................................................................................................................................................................................................TGTTGTTG------------------AT------GCCCACGAGTTT..............................................................................................................................................................................................................2230.331010000
...........................................TGCTGGTATAGCTGTGGT-----TGGGGG........................................................................................................................................................................................................................................................................................................................................................................................................................24120.253021000
.................................................................................................................................................................TG-------------------------------------------C---------------------TGTTGTTG------------------AT------GCCCACGAG.................................................................................................................................................................................................................22200.204040000
...........................................TGCTGGTATAGCTGTGGT-----TGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................22120.172020000
...........................................TGCTGGTATAGCTGTGGT-----TGGGGGG-......................................................................................................................................................................................................................................................................................................................................................................................................................25120.172020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTCTGTCTGTCCGTCC..................19200.102200000
............................................................................T-G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGT.........................................................................................................................................................................................................................................................24200.102020000
............................................................................T-G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TG..........................................................................................................................................................................................................................................................23200.102020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGTCCGTCCGTCT..........18200.102200000
..............................................................................................................................................................................................................................................................................................................................................GTAAAAGTGGATGTGTGTA-----A.........................................................................................................................20200.102020000
......................................................................................................................TCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTG.......................................................................................................................................................................................................................................................22200.102020000
.......................................................................................................................................................................................................................................................................................................................................................................CGTCCAGAAGGAATCGTTT......................................................................................................19200.102000002
............................................................................T-G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------..................................................................................................................................................................................................................................................................................20200.102020000
.................................................................................................................................................................TG-------------------------------------------C---------------------TGTTGTTG------------------AT------GCCCACGA..................................................................................................................................................................................................................21200.102020000
..............................................TGGTATAGCTGTGGT-----TGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................19120.081010000
.........GC--------------------------------TGCTGGTATAGCTGTGGT-----TGG...........................................................................................................................................................................................................................................................................................................................................................................................................................23120.081010000
...........................................TGCTGGTATAGCTGTGGT-----TGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................22120.081000001
.............................................CTGGTATAGCTGTGGT-----TGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................20120.081010000
...................................................TAGCTGTGGT-----TGGGGGG-CGT-..................................................................................................................................................................................................................................................................................................................................................................................................................20120.081010000
.................................................TATAGCTGTGGT-----TGGGGGG-C.....................................................................................................................................................................................................................................................................................................................................................................................................................20120.081010000
............................................GCTGGTATAGCTGTGGT-----TGGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................22120.081010000
...........................................TGCTGGTATAGCTGTGGT-----TCC...........................................................................................................................................................................................................................................................................................................................................................................................................................21120.081000001
.................................................TATAGCTGTGGT-----TGGGGAC-......................................................................................................................................................................................................................................................................................................................................................................................................................19130.081000001
.................................................TATAGCTGTGGT-----TGGGGGA-......................................................................................................................................................................................................................................................................................................................................................................................................................19130.081010000
..................................................ATAGCTGTGGT-----TGGGGGT-T.....................................................................................................................................................................................................................................................................................................................................................................................................................19150.071010000
............................................................T-----TGGGGGG-CGT-G-----------------------------------C--TTCTGTG....................................................................................................................................................................................................................................................................................................................................................................20190.051010000
.....................................................................................................................TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------A.................................................................................................................................................................................................................................27190.051010000
.........................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGATGTGTGTA-----..........................................................................................................................24200.051000001
..............................................................................................................................................................................................................................................................................................................................GTATATTAGATTTGTGGTAAAAGTGG........................................................................................................................................26200.051010000
........................................................................................................................TGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------..................................................................................................................................................................................................................................23200.051000001
........................................................................................................................TGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------AA------A.........................................................................................................................................................................................................................26200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTTCCGACCC...............................................................................................20200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGAATCGTTTCCG...................................................................................................20200.051000010
...............................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTAAAAG...........................................................................................................................................22200.051000001
..............................................................................G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------T...........................................................................................................................................................................................................................................................21200.051010000
............................................................................T-G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTG.......................................................................................................................................................................................................................................................26200.051010000
..........................................................................................................................TGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------..................................................................................................................................................................................................................................21200.051010000
..................................................................................................................................GC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------AT------GCCCACGA..................................................................................................................................................................................................................23200.051010000
..............................................................................G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTG.......................................................................................................................................................................................................................................................25200.051010000
........................................................................................................................TGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGT......................................................................................................................................................................................................................................................21200.051010000
..................................................................................................................C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGT......................................................................................................................................................................................................................................................25200.051010000
..........................................................................................................................TGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGTTGTTG------------------AT------GCC.......................................................................................................................................................................................................................26200.051010000
..............................................................................G-----------------------------------C--TTCTGTGACTCTCGC-----------------------------TG-------------------------------------------C---------------------TGT.........................................................................................................................................................................................................................................................23200.051010000
droWil2
GCGCCAGTTAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGAGGAAAAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATTTACTTTTTA------------------G-------TATTTT------TATACCATACACCCATA------GGG-T--GAAATGGTATATTAAAGTCGCCAA-------AATGTATGTA-----ACAGGCAGAAGGAAGCATCTCCGACCCCACAA------AGT--ATATATATTCTTGATCAGGATCAACAACCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGT--------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................TGTATGTA-----ACAGGCAGAAGGAAGCA.........................................................................................................25204.0581000810
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................26201.65330110220
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................27200.751508070
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGTC.......................21200.5010010000
..............................................................................................................................................................................................................................................................................................................................................AA-------AATGTATGTA-----ACAGGCAGA.................................................................................................................21200.35707000
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................28200.35706100
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CG............................................................................................................................................................................................................................................................................................................................................................................................................................25200.30606000
...............................................................................................TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATTTACTTT...............................................................................................................................................................................................................................................27200.30606000
............................................................................................................................................................................................................................................................................................................................TGGTATATTAAAGTCGCCAA-------AATGTATG.................................................................................................................................28200.25505000
.........AAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................25200.25500050
...............................................................................................................................................................................................................................................................................................................................................................................AGGAAGCATCTCCGACCCCA.............................................................................................20200.20404000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAACAACCG.................................................21200.20404000
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................28200.15303000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCGAGTCGATCTAGCCATGTCC..............................27200.15303000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAACAACCGAG...............................................25200.15303000
..............................................TGGCCAAGTCGTGTT-----CGAGGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................24200.15302010
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAACAACC..................................................22200.10220000
............................................................................GAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATT.....................................................................................................................................................................................................................................................24200.10202000
.........AAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................27200.10202000
........TAAC------------------------------ATCTTGGCCAAGTCGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000
...........................................TCTTGGCCAAGTCGTGTT-----CGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
...........................................TCTTGGCCAAGTCGTGTT-----CGAGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000
..............................................TGGCCAAGTCGTGTT-----CGAGGAAAAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................27100.10100010
.....AGTTAAC------------------------------ATCTTGGCCAAGTCGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10201010
........................................................................AAAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TT.........................................................................................................................................................................................................................................................24200.05100010
..........................................................................AAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATT.....................................................................................................................................................................................................................................................26200.05100010
..........................................ATCTTGGCCAAGTCGTGTT-----CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGTCGATCTAGCCATGTCCGTCTGT........................29200.05101000
.........................................................................AAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTTA......................................................................................................................................................................................................................................................26200.05100010
........................................................................AAAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTA.......................................................................................................................................................................................................................................................26200.05100010
.............................................TTGGCCAAGTCGTGTT-----CGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
.........................................................................AAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TT.........................................................................................................................................................................................................................................................23200.05100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCCATGTCCGTCTGTCC......................20200.05100010
.........................................................................AAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTAT......................................................................................................................................................................................................................................................26200.05101000
.......................................................................AAAAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TT.........................................................................................................................................................................................................................................................25200.05100010
...............................................................................................TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATTTACT.................................................................................................................................................................................................................................................25200.05101000
........................................................................AAAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATT.....................................................................................................................................................................................................................................................28200.05100010
................................................................................................................................................................................................................................................................................................................................................................A-----ACAGGCAGAAGGAAGCATCTCCG...................................................................................................24200.05100010
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACCGAGTCGATCTAGC.....................................21200.05100100
.............................................TTGGCCAAGTCGTGTT-----CG............................................................................................................................................................................................................................................................................................................................................................................................................................18200.05101000
.............................................................................................................................................................................................................................................................................................................................................................TGTA-----ACAGGCAGAAGGAAGCA.........................................................................................................21200.05100100
...................................................................................................................TTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATTTACTTTTTA------------------G-------TA................................................................................................................................................................................................................27200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAACAACCGAGTCGA...........................................21200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGTCCGTCTGTCC......................22200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCCGTCTGTCCGTCCGTCCG.............25200.05100010
.......TTAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100010
..........AC------------------------------ATCTTGGCCAAGTCGTGTT-----CGA...........................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
............................................CTTGGCCAAGTCGTGTT-----CGAGGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGCCATGT................................27200.05101000
.................................................................................................................................................................................................................................................................................................................................TATTAAAGTCGCCAA-------AATG.....................................................................................................................................19200.05101000
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGATTT........................................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000
.......................................................................................................................C-----------------------------------------TG-------------------------------------------T--G-------------------TTTATTTACTTTTTA------------------G-------TATTT.............................................................................................................................................................................................................26200.05100010
............................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAACAACCGAGTC.............................................23200.05101000
.............................................................................................................................................................................................................................................................................................................................................CAA-------AATGTATGTA-----ACAGGCAG..................................................................................................................21200.05100010
.........................................................................AAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATC.....................................................................................................................................................................................................................................................27200.05101000
.......TTAAC------------------------------ATCTTGGCCAAGTCGTGTT-----C.............................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...........................................TCTTGGCCAAGTCGTGTT-----CGAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAACAACCG.................................................27200.05100010
........TAAC------------------------------ATCTTGGCCAAGTCGTGTT-----CT............................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTCTGTCCGTCCGTCCGTCCGT--------25200.05101000
..............................................TGGCCAAGTCGTGTT-----CGAGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
.........................................................................AAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATT.....................................................................................................................................................................................................................................................27200.05101000
........................................................................AAAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTAT......................................................................................................................................................................................................................................................27200.05100010
..............................................TGGCCAAGTCGTGTT-----CGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
.........AAC------------------------------ATCTTGGCCAAGTCGTGTT-----CGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
.....................................................................................................................................................................................................................................................................................................................T--GAAATGGTATATTAAAGTC.....................................................................................................................................................20200.05100100
..........................................ATCTTGGCCAAGTCGTGTT-----CGAGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
.........................................................................AAAGAG----------------TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTA.......................................................................................................................................................................................................................................................25200.05100010
...............................................................................................TAACT--------------TTTCCC-----------------------------------------TG-------------------------------------------T--G-------------------TTTATTTACTTTT..............................................................................................................................................................................................................................................28200.05101000
.......................................................CGTGTT-----CGAGGAAAAAGAG----------------TAACT--------------TTT...........................................................................................................................................................................................................................................................................................................................................................................27200.05100010
droVir3
TTGAC--GAAAT------------------------------GTGCTCTT---G--------------------------------------------------------------------------------TATTTG--------GCATAGGGTATCT------------------------------------------------GCCAGT----CAGTGTGG----TA-------------------TT---TCATAT-------TTTTAT------CATATCCTGAGCCCATTTAAAATGGG-T--ATAAGGGCATATTGTATTTGTGCGAAATCCAAATGTATGTA-----ACAGGCAGAAGGAAGCATCTCCGACCCCATAA------AAT--ATATATATTCTTGATCAGCATCAATAGCCGAGTCGATCTACCCATGTCCGTCGGTCTGTCCGTCCGTCCGT--------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCCG.................................................27200.95190000000000000000000000000000019000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGGAAG...........................................................................................................22200.357000000000000000000000000000070000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCG............................................25200.255000000000000000000000000000000050000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGCCGAG...............................................25200.153000000000000000000000000300000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGGAAGCATCT......................................................................................................26200.153000000000000000000000000000003000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TGGG-T--ATAAGGGCATATTGTATTTGT...................................................................................................................................................26140.142001000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TAAGGGCATATTGTATTTGTG..................................................................................................................................................21150.132000000000000000000001000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTACCCATGTCCG.............................26160.132000000000000000000000000000000000200000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TA-----ACAGGCAGAAGGAAGCATCTCC....................................................................................................24200.102000000000000000000000000020000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCATCTCCGACCCCAT............................................................................................27200.102000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................GGG-T--ATAAGGGCATATTGTATTTGTG..................................................................................................................................................26140.071000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTACCCATGTCCGTC...........................26150.071000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTACCCATGTCCGTC...........................27150.071000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................................................................................GG-T--ATAAGGGCATATTGTATTTG....................................................................................................................................................23160.061000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTACCCATGTCC..............................25170.061000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCATCAATAGCCGAGTCGATCTAC......................................27170.061000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................AATGGG-T--ATAAGGGCATATTG..........................................................................................................................................................21170.061000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTACCCATGTC...............................24180.061000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................T--ATATATATTCTTGATCAGCATCA........................................................24200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TGCGAAATCCAAATGTATGTA-----ACAGG.....................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAATAGCCGAGTCGATCTA.......................................24200.051000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GAAGGAAGCATCTCCGACCCCATAA------AA..................................................................................27200.051000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTTGTGCGAAATCCAAATGTATGTA-----AC........................................................................................................................27200.051000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGCC..................................................26200.051000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AAATCCAAATGTATGTA-----ACAGGCAG..................................................................................................................25200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGCATCAATAGCCGAGTCG............................................26200.051000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGGAA............................................................................................................21200.051000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTACCCATGTCCGT............................20200.051000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TCCAAATGTATGTA-----ACAG......................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATGCGTGTTTAT------------------------------GCGTGGGT-------------GCTTGTGTG-----------------------------------------------------------------------------------------TGTATGTGT--TTCTGTATGTGTGTGTATGTGTTTGCAATAA---TTACTG---------------AAT--------------------------------T-------CATTTT------TATACCCTGAACCCATTGAAAATGGGAA--ATCAGGGTATAATGGTTTTG-TGA-------AAAGTATGTA-----ACAGGCAGAAGGAATCATCGCAGACCCCATAA------AGT--ATATATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTGTCCGTCCGTCCGTCCGT--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGACGACGAGC...................................................23200.153300000
........................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGGAATCATCGCAG...................................................................................................21200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGTCGATATAGCCCTG.................................20200.102200000
.........................................................................................................................................................................................................................................................................................................TTGAAAATGGGAA--ATCAGGGTATAA............................................................................................................................................................25200.102000020
............................................................................................................................................................................................................................................................................................TACCCTGAACCCATTGAAA.................................................................................................................................................................................19200.102200000
...............................................................................................................................................................................................................TACTG---------------AAT--------------------------------T-------CATTTT------TATACCCTGAAC..........................................................................................................................................................................................27200.051100000
.................................................................................................................................................................................................................CTG---------------AAT--------------------------------T-------CATTTT------TATACCCTGAACCCAC......................................................................................................................................................................................29200.051000010
.TGCGTGTTTAT------------------------------GCGTGGGT-------------GCTTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
....GTGTTTAT------------------------------GCGTGGGT-------------GCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..................................................................................................................................................................................................TTGCAATAA---TTACTG---------------AAT--------------------------------T-------CATTTT------TAA...................................................................................................................................................................................................28200.051100000
..................................................................................................................................................................................................TTGCAATAA---TTACTG---------------AAT--------------------------------T-------CATTTT------TAT...................................................................................................................................................................................................28200.051000010
...................................................................................................................................................................................................................................AAT--------------------------------T-------CATTTT------TATACCCTGAACCC........................................................................................................................................................................................24200.051000010
..............................................................................................................................................................................................................TTACTG---------------AAT--------------------------------T-------CATTTT------TATACCCTGAACC.........................................................................................................................................................................................29200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGACGACGAGCTGAGT..............................................26200.051100000
.........................................................................................................................................................................................................AA---TTACTG---------------AAT--------------------------------T-------CATTTT------TATACCC...............................................................................................................................................................................................25200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCCTGTCCGTCTGTCCGTCCGT................26200.051100000
.TGCGTGTTTAT------------------------------GCGTGGGT-------------GC...............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
droGri2
GTGCTTGT---------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTGTGTAG----------------------------AAT---C---------------------TTTTGTT-------------------AT------G-------CGTTTT------TATACCCTGAACCCATTGATAATGGGTA--AAAAGGGTATAATGGGTTTGTGCA-------AATGTATATA-----AGAGGCAGAAGGAAGCATCTCCGACCCCATAA------AGT--ATATATATTATTGATCAGGGTCAACAGTCGAGTCGATATAGCCATGTCCGTCCGTCCGTCCGTCTGTCTGT--------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCATGTCCGTCCGTC.......................19130.08110
droAna3
TGGAC------------------------------------------------------------GTGAAGAAGAAGAA----------------TATTTTG--------------------------------TATATT--------------------------ATGT------------------------AA----AAT---TTTGTA---------------CACCTATAT------------------G---AAATT-------TTTTATTACAAAAATA-CCTT-----GC---------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCA-----ACGCAGTGAAGGAGACATCTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGGATCACCTCCTGAGTCGATATGAGCATGTCCGTCTGTCCGTCTGTCCGTTTCT--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................GTGCA-----ACGCAGTGAAGGAG............................................................................................................19200.204000004
..............................................................................................................................................................................................................................................................................................................................................................GCA-----ACGCAGTGAAGGAGACATCTCCGA..................................................................................................27200.153003000
.......................................................................................................................................................................................................................................................................................................................................TTTTGGTCA-------AAAGTGTGCA-----ACGCA.....................................................................................................................24200.153003000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCACCTCCTGAGTCGAT..........................................21200.102000020
.............................................................................................................................................................................................................................................................................................................................GGTATTATAATTTTGGTCA-------AA.......................................................................................................................................21200.051010000
...................................................................................................................................................................................................................................................................................................................................ATAATTTTGGTCA-------AAAGTGTGC................................................................................................................................22200.051100000
droBip1
TGGTG-------------------------------------------------G--------AC-----GAAGAAGG------------------------------------TTAGTC----------CGCGATTCCG---A-----TA--------------TAGGG------------------------AA----GTTTCAC--TC----------------CCAC-----TG------------------------G-------TTTTTT------TATACCCTT-----GC---------------AGAGGGTATTATAATTTTGGTCA-------AAAGTGTGCA-----ACGCAGTGAAGGAGACATCTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGGATCACCTCCTGAGTTGATATAAGCATGTCCGTCTGTCCGTCTGTCCGTCTGT--------SizeHit CountTotal NormTotal
No Reads
droKik1
ACATG----------------------------------------CCTGT---GG--------GCCA--AATG-TGG-G-----------------------------------C--TTC-------CTCAT-----------------------------TGTGTGTGC-----------------------------------------------------------TTAGTC-------------------AC------A-------TATATT------TATACCCTT----------------------GCAGGGTATTATAATTTCAGTCA-------GAAGTTTGCA-----ACGCAGTGAAGGAGACGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCTGTCTGT--------SizeHit CountTotal NormTotal
No Reads
droFic1
CTGGTGCGCATA---------------------------GGTGTGCC-----------------------------------------------------------------------------------GCTGCAGTTGCATATTTGTAA-------------------------------------------------TC-------CGC---------------TCTTCAAGCC------------------T------C-------TCTTTT------TATACCCTT-----GCA------GAG-C--A-AAGGGTATTATAATTTTGGCCA-------GAAGTTTGCA-----ACGCAGTGAAGGAGACACCTCAGACCCCATAA------AGT--ATATATATTCTTGATCAGCATCACGATCTGAGTCGAAATACGTCTGTCCGTCTGTCCGTCTGTCCGTCTGT--------SizeHit CountTotal NormTotal
No Reads
droEle1
TGATG-------------------------------------------------G--------ACCG--TAGG-AGGG------------------------------------TTTTCC----------TTTGTCTTTG---ATTTGGCA---------------------------------------------------C---CG-------------------CCTTCGTCT------------------CTTTTCTCT-------TTTTTT------TATACCCTT-----GC---------------AGAGGGTATTATAATTTCAGTCA-------GAAGTTTGCA-----ACGCAGTGAAGGAGACATCTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGCATCACTAGGCGAGTCGATCTAGCCATGTCCGTCTGTCCGTCTGTCCGTCCGT--------SizeHit CountTotal NormTotal
No Reads
droRho1
AACATTG--GC-TTGTAGGGCCCTCAAAGCGAAGGGTTCGATGTGC------------------------TAA------------------------------------------------------------------------------------------------A------------------------AA----GTT---TC--CC---------------CTT------TC------------------------G-------GCTCAT------TATACCCGTTACTCGTA------GAG-T--AAAAGGGTATATTGTATTCGTGCA-------AAAGTATGTA-----ACAGCTAGAAGGAAGCGTTTCCGACCCTATAA------AGT--ATATATATTCTTGATCAGGGTCACTAGCCGAGTCGATATAGCCATGTCCGTCTGTCCGTCTGTCCGTCTGT--------SizeHit CountTotal NormTotal
No Reads
droBia1
AAGCAACTCAAC------------------------------GTGTTCGT---GCGGCTGCCGAACC-------------------------------------------------------------TCGG-----------------------------TATGTGTGTGG------------------------------------------------------------------------------------------T-------ACTTGT------TATAGCCGTTACTCGTG------GAG-T--AAAAGGATATACTAAATTCGATGG-------GAAAGATGTA-----ACACGCAGAAAGAAGCGTTTCCGACCCCATAAAGCAAAAGT--ATTTATATTCTTAATTAGGATCACTAGCCAAGTCGATTTAGCCATATCCGTCTATCCGTCTGTCCGTTCGT--------SizeHit CountTotal NormTotal
No Reads
droTak1
GTGCC--TCATC---------------------------GATGTG--GAG----G--------ACGTGGCCG-------AGGCCATGGCGCTTCA-----GCAGTGCGG--------------------------------------------------CT------------------------------------------------GCCAGTTCTGCATCGAGG----TA-------------------AG---TC---C-------CATTTT------TATACCCGTTACTCGTA------GAG-T--ACAAGGGTATATTGTATTCGTTCA-------AAAGTATGTA-----ACAGCTAGAAGGAAGCGTTTCCGACCCCATAA------AGTGTATATATGCTCTTGATCAGGGTCACTAGCCGAGTCGATCTAGCCATGTCCGTCTATCCGACTATCCGTCTGT--------SizeHit CountTotal NormTotal
No Reads
droEug1
AGACGGGT----------------------------------------------------------------------------------------TCTTTC-----------------------------------------------------------CGTTTCGGT------------------------CAGC---AATCTTTG------------------CCTTGG-----------------------------T-------TCTTTT------TATACCCGTTACTCGTA------GAG-T--AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTA-----ACAGATAGAAGGAAGCTTTTGCGACCCTATAA------AGT--ATATATATTCTTGATCAGGATCAATAGCGAAGTCGATTGAGCCATGTCCGTCTGTCCGTCCGTCCGTCCGT--------SizeHit CountTotal NormTotal
No Reads
dm3
GTACC--AAAAC------------------------------GTGTCCAA---AAGGTGATAGACGC--TAAGGAAGGG----------------TATAT----------------------------------------------------------------------------------------------------------T--G-------------------TTTATTAATTTTTTATAATTTGTAGT---C---G-------ATTTTT------TATACCCGTTAATCGTT------TAG-T--AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTA-----GCAGGAAGATGGAAGCGTTTCCGACTATATAA------AGT--ATATATATTCTCGATCAGGATCAATAGCCAAATCGATCTAGCCATGTCCGTCTGGCCG---------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAGGAAGA.................................................................................................................26329.3388000000000000000000000000000000000000000010000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023012322001010000000000000000000000000000000000000000001000000200000000000011030200000000000000000000000000000000000000000000000000000000000000000000310010000005120000000000000081567000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAGGAAG..................................................................................................................25311.33340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100023000000000000000000000000000000000000000000000000001000000000200200000000000000000000000000000000000000000000000000000000000000000000000001300000000402000000000000004333000000
............................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTA-----GCAGGAAGATGG..............................................................................................................26310.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100200015000000000000000000000000000000000000000000000000000000000000000010100000000000000001000000000000000000000000000000000000000000000000000003500000000101000000000000000313000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAGGAA...................................................................................................................2435.67170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010210000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000412000000000000000201000000
............................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTA-----GCAGGAAGATG...............................................................................................................2534.67140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200001100000000000000000000000000000000000000000100000000000000000000000000110201100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000101000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----GCAGGAAGA.................................................................................................................2734.67140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100001000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000603000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----GCAGGAA...................................................................................................................2534.33130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000200000000000000000000000000000000000000100000000000002000000000000100000000000000000000000000000000000000000000000000000000000000000000000000201000000002000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----GCAGG.....................................................................................................................2364.33260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110120000000000000000000000000000000000000100000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000212010000442000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGATCTAGCCATGTCCGTCTGGC.......................2733.33100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000020304000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AAGTATGTA-----GCAGGAAGATGGAAGC..........................................................................................................2533.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000001103000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAGGA....................................................................................................................2332.6780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010200100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002000000
................................................AA---AAGGTGATAGACGC--TAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................21102.60260000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000500180000000001000001501000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCAGGATCAATAGCCAAATCGA...........................................2632.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTA-----GCAGGAAGATGGA.............................................................................................................2732.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCAAATCGATCTAGC.....................................2632.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010401000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAAGTATGTA-----GCAGGAAGATGGA.............................................................................................................2332.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........AAC------------------------------GTGTCCAA---AAGGTGATAGACGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................2532.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000001011000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................TTAATCGTT------TAG-T--AAAAGGGT................................................................................................................................................................2132.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000013000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAATCGATCTAGCCATGTCCG.............................2632.0060000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000111000000000000000100000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----GCAGGAAG..................................................................................................................2632.0060000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCAAATCGATCTAGCCAT..................................2532.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAGGAAGAT................................................................................................................2732.0060000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010010100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.........................................................TGATAGACGC--TAAGGAAGGG----------------TATAT----------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................2532.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100101000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000020000000
.................................................A---AAGGTGATAGACGC--TAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................20101.70170000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000000000000000000000000000000000000000000000030000000000000002301000000320000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAATCGATCTAGCCAT..................................2131.6750000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100030000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TTTTATAATTTGTAGT---C---G-------ATTT..............................................................................................................................................................................................................2231.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TGATAGACGC--TAAGGAAGGG----------------T................................................................................................................................................................................................................................................................................................................................................................................................2131.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010100000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCAAATCGATCTAGCCATG.................................2631.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000
..........................................................GATAGACGC--TAAGGAAGGG----------------TATAT----------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................2431.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000001000000
............................................................TAGACGC--TAAGGAAGGG----------------TATAT----------------------------------------------------------------------------------------------------------T--G-------------------T..........................................................................................................................................................................................................................................................2531.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAG......................................................................................................................2161.3380000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................TAGACGC--TAAGGAAGGG----------------TATAT----------------------------------------------------------------------------------------------------------T--G-------------------TT.........................................................................................................................................................................................................................................................2631.3340000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCGATCTAGCCATGTCCGTCTGG........................2631.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AAGTATGTA-----GCAGGAAGATGGAAG...........................................................................................................2431.3340000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAGGAAGATG...............................................................................................................2831.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................TAA------AGT--ATATATATTCTCGATCAGGA...........................................................2631.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTA-----GCAGGAAGA.................................................................................................................2331.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----GCAGGA....................................................................................................................2431.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----GCAGG.....................................................................................................................2261.3380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000501000000000000000000000000
.......................................................GGTGATAGACGC--TAAGGAAGGG----------------T................................................................................................................................................................................................................................................................................................................................................................................................2331.3340000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----GCAG......................................................................................................................2261.1770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000001000000000
...............................................CAA---AAGGTGATAGACGC--TAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................22101.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000101000000010000000000000001002000000
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...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----GCAGGAAGATGGAAGCGTT.......................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAATCGATCTAGCCATGTCCGTC...........................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...............................................CAA---AAGGTGATAGACGC--TAAGGAAGGG----------------G................................................................................................................................................................................................................................................................................................................................................................................................2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................AAAGTATGTA-----GCAGGAAGATGGAAG...........................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................GCAGGAAGATGGAAGCGTTTC.....................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCGATCTAGCCATGTCCGTC...........................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TAAGGAAGGG----------------TATAT----------------------------------------------------------------------------------------------------------T--G-------------------TTTATTAATT.................................................................................................................................................................................................................................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TTTTTTATAATTTGTAGT---C---G-------ATTTT.............................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACC--AAAAC------------------------------GTGTCCAA---AAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droSim2
AAGGA------------------------------------------------------------------------------------------TTCCTTC-----------------------------TAGCTGTTGCATACT--------------------------------------------------------TCTAT--T-------------------TTTATTAA------------------T------T-------TTCTTT------TATAATATTTGATAATA------CAG-TTTAGATATATATACTAGATTCGTTGA-------AAAGTATGTA-----ACAGGCAGAAGAAAGCGTTTCCGACTATATAA------AGT--ATATATATTCTTGATCAGGATCAATAGCCGAGTCGATCTAGCCATGCTCGTCTGTCCGTATG-----------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAGCGTT.......................................................................................................251745.597750001100319091116431320000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAGCGT........................................................................................................241813.062350002390312816153101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGT..............................................25209.00180000000149021010000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAA.............................................................................................................19202.7054000054000000000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAA.............................................................................................................24202.25450000004717114002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTAGCCATGCTCGTCTGTC.......................2112.00200200000000000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAA............................................................................................................25171.9433000100225217040000
..................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATCAATAGC...................................................27201.8036000000020034000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGA..............................................................................................................18201.7034000028000006000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GT--ATATATATTCTTGATCAGGATC.........................................................24201.5030000000040026000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAA............................................................................................................20201.3026000002200004000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTA.......................................25201.2525000000018700000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCATG.................................25201.2525002200000017130000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGA..............................................................................................................19201.2024000002300001000000
......................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGTT.......................................................................................................19201.1523000000000023000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGA..............................................................................................................23201.1022000000642010000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAG...........................................................................................................21201.0521000002100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTAGCCATGCTCGTCTGTC.......................2211.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAAG...........................................................................................................26171.0017000000002014010000
...GA------------------------------------------------------------------------------------------TTCCTTC-----------------------------TAGCTGTTGC...................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
........................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGAAAGCGTT.......................................................................................................17200.9018000000000018000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAGCGTTT......................................................................................................26160.8814000000010211000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGT..............................................26200.8016010000000150000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GT--ATATATATTCTTGATCAGGAT..........................................................23200.801600800000008000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GT--ATATATATTCTTGATCAGGATCAATA.....................................................28200.7515003000000012000000
........................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGAAAGCGT........................................................................................................16200.7014000000000014000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGGCAGA.................................................................................................................27200.701400090000000104000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAGCG.........................................................................................................23190.6813000000102010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCA...................................23200.601200000000430050000
...................................................................................................................................................................................................................................................................................................................................................................................................TAA------AGT--ATATATATTCTTGATCAGGA...........................................................26200.5010000000100000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCC....................................22200.5010000000000010000000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGAAAGCGT........................................................................................................25160.50800000000008000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAAGCGTT.......................................................................................................30110.45500000041000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----ACAGGC....................................................................................................................23200.45900000071000001000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGG.....................................................................................................................23200.40800000000080000000
......................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGT........................................................................................................18200.40800000000008000000
..........................................................................................................................................................................................................................................................................................................................................................................GCAGAAGAAAGCGTT.......................................................................................................15200.40800000000008000000
............................................................................................................................................................................................................................................................................................................................................................ATGTA-----ACAGGCAGAAGAAAGCGTT.......................................................................................................24180.39700010000006000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGGCAG..................................................................................................................26200.35700000000500002000
.........................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGAAAGCGT........................................................................................................15200.35700000000007000000
...........................................................................................................................................................................................................................................................................................................................................GTTGA-------AAAGTATGTA-----ACAGGCAGA.................................................................................................................24200.35700000030310000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----ACAGGCA...................................................................................................................24200.30600000002000004000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCAT..................................19200.30600000000006000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGAT..........................................................21200.30600200002200000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGGCAGAA................................................................................................................28200.30600000000600000000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGAAAGCGTT.......................................................................................................26150.27400000000004000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----ACAGGCAG..................................................................................................................25200.25500000000000041000
...............................................................................................................................................................................................................................................................................................................................................................TA-----ACAGGCAGAAGAAAGCGTT.......................................................................................................21200.25500000000005000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGATCAATAGCCGAGTCGATC.........................................26200.25500000000005000000
.....................................................................................................................................................................................................................................................................................................................................................................................................A------AGT--ATATATATTCTTGATCAGGAT..........................................................25200.25500000000500000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAG...............................................24200.25500000040100000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAAGCG.........................................................................................................28130.23300000000000030000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATC.........................................23200.20400000000400000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAATAGC...................................................28200.20400000000004000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCATG.................................22200.20400310000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCCGAG...............................................27200.20400000013000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----ACAGGCAGA.................................................................................................................26200.20400000000000040000
.............................................................................................................................................................................................................................................................................................................................................................TGTA-----ACAGGCAGAAGAAAGCGTT.......................................................................................................23200.20400000001102000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAAT......................................................16200.20400000000004000000
....................................................................................................................................................................................................................................................................................................................................................................................................AA------AGT--ATATATATTCTTGATCAGGA...........................................................25200.20400000040000000000
................................................................................................................................................................................................................................................................................................................................................................A-----ACAGGCAGAAGAAAGCGTT.......................................................................................................20200.20400000000004000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAAGCGT........................................................................................................29120.17200000001001000000
......................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCGTTTC.....................................................................................................21190.16300000000003000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGGCC...................................................................................................................25200.15300000000000003000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGC.....................................21200.15300200000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCATG.................................26200.15300000000003000000
...................................................................................................................................................................................................................................................................................................................................................................................................TAA------AGT--ATATATATTCTTGATCAGG............................................................25200.15300000000300000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCT........................................24200.15300000000030000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTA.......................................19200.15300000000003000000
..............................................................................................................................................................................................................................................................................................................................................................GTA-----ACAGGCAGAAGAAAGCGTT.......................................................................................................22200.15300000000003000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATCTA.......................................26200.15300000000120000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAGCGTTTC.....................................................................................................27140.14200000000002000000
............................................................................................................................................................................................................................................................................................................................................TTGA-------AAAGTATGTA-----ACAGGCAGAAGA..............................................................................................................26170.12200000000200000000
.............................................................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTA-----ACAGGCAGAAGAA.............................................................................................................26170.12200000000011000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCAT..................................25200.10200000000200000000
...............................................................................................................................................................................................................................................................................................................................................................TA-----ACAGGCAGAAGAAA............................................................................................................16200.10200000000002000000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGAAAG...........................................................................................................22200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................T--ATATATATTCTTGATCAGGATCAAT......................................................26200.10200020000000000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAG......................................................................................................................22200.10200000000200000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGGCA...................................................................................................................25200.10200000000002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAGCCGAGTCGATCTAGCCA...................................24200.10200000002000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................ATATATTCTTGATCAGGATCAATAGC...................................................26200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................ATATACTAGATTCGTTGA-------AAAGTAT..................................................................................................................................25100.10100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGT..............................................19200.10200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCCGA................................................26200.10200000000011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGA...........................................15200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCGAGTCGAT..........................................24200.10200000020000000000
......................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAGCG.........................................................................................................17200.10200000000002000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCC....................................18200.10200000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAAT......................................................25200.10200000000010010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTAGCCAT..................................24200.10200010000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCT........................................18200.10200000000002000000
..............................................................................................................................................................................................................................................................................................................................................................GTA-----ACAGGCAGAAGA..............................................................................................................15200.10200000000002000000
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGGCAGAAGA..............................................................................................................30110.09100000001000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----ACAGGCAGAAGA..............................................................................................................29120.08100000010000000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAAGC..........................................................................................................27140.07100010000000000000
................................................................................................................................................................................................................................................................................................................................................................A-----ACAGGCAGAAGAAAGCGTTTCCGA..................................................................................................25140.07100000000100000000
...............................................................................................................................................................................................................................................................................................................................................................TA-----ACAGGCAGAAGAAAGCGTTTCC....................................................................................................24150.07100000000000100000
............................................................................................................................................................................................................................................................................................................................................................ATGTA-----ACAGGCAGAAGAAAGCGTTTC.....................................................................................................26150.07100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................AAAGTATGTA-----ACAGGCAGAAGAAAGCG.........................................................................................................27150.07100000000001000000
.............................................................................................................................................................................................................................................................................................................................................TGA-------AAAGTATGTA-----ACAGGCAGAAGA..............................................................................................................25170.06100000000100000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAGCGTTG......................................................................................................26170.06100000000100000000
................................................................................................................................................................................................................................................................................................................................................................A-----ACAGGCAGAAGAAAGCGTTTCC....................................................................................................23170.06100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGAAAGCG.........................................................................................................24170.06100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................GTATGTA-----ACAGGCAGAAGAAAGCGTC.......................................................................................................26170.06100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................AAAGTATGTA-----ACAGGCAGAAGAAAG...........................................................................................................25190.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................TATGTA-----ACAGGCAGAAGAAAGCGTC.......................................................................................................25190.05100000000010000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAACA...........................................................................................................26200.05100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCA...................................20200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGC...................................................18200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................AGATTCGTTGA-------AAAGTATGTA-----ACAGGC....................................................................................................................27200.05100000000000010000
...............................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTG.................................................................................................................................................16200.05100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGGATCAATAGCCGAGTCGAT..........................................26200.05100000000000010000
............................................................................................................................................................................................................................................................................................................................................................ATGTA-----ACAGGCAGAAGAAA............................................................................................................19200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATCTAGCCAT..................................20200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................TAA------AGT--ATATATATTCTTGATCAGGAT..........................................................27200.05100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATCTAGCCATG.................................15200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCAGGATCAATAGCCGAGTCGAT..........................................28200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACTATATAA------A...................................................................................16200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----ACAGG.....................................................................................................................22200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATCAATAGCCGAGT..............................................17200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................TTCCGACTATATAA------AGT--ATATATA........................................................................24200.05100000000100000000
.......................................................................................................................................................................................................................................................................................................................................ATTCGTTGA-------AAAGTATGTA-----ACAGG.....................................................................................................................24200.05100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAA.......................................................24200.05100000000010000000
.......................................................................................................................................................................................................................................................................................................................................ATTCGTTGA-------AAAGTATGTA-----ACAGGC....................................................................................................................25200.05100000000100000000
............................................................................................................................................................................................................................................................................................................................................................ATGTA-----ACAGGCAGAAGAAAGCG.........................................................................................................22200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................A-----ACAGGCAGAAGAAAGCGTTT......................................................................................................21200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGTC.............................................27200.05100000000000010000
..............................................................................................................................................................................................................................................................................................................................................................GTA-----ACAGGCAGAAGAAAGCGT........................................................................................................21200.05100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................GCAGAAGAAAGCGTTTC.....................................................................................................17200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGTCG............................................25200.05100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGA...........................................21200.05100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCG.................................................23200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTA.......................................18200.05110000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGCCA...................................18200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGGATCAATAGC...................................................25200.05100010000000000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAAA...........................................................................................................26200.05100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATCAATA.....................................................25200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATC.........................................17200.05100000010000000000
......................................................................................................................................................................................................................................................................................................................................GATTCGTTGA-------AAAGTATGTA-----ACAGGC....................................................................................................................26200.05100000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGA................................................24200.05100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGATCAATAGCCGAGT..............................................23200.05100000000010000000
...........................................................................................................................................................................................................................................................................................................................................GTTGA-------AAAGTATGTA-----ACA.......................................................................................................................18200.05100000000010000000
..................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACTA...............................................................................................15200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCC....................................19200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................CAGAAGAAAGCGTTT......................................................................................................15200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................GTTGA-------AAAGTATGTA-----ACAGGCAGAAG...............................................................................................................26200.05100000000010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATC.........................................24200.05100000001000000000
.................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGA-------AAA......................................................................................................................................18200.05100000000001000000
..............................................................................................................................................................................................................................................................................................................................................................GTA-----ACAGGCAGAAGAA.............................................................................................................16200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................AAAGTATGTA-----ACAGGCAGAAGA..............................................................................................................22200.05100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GT--ATATATATTCTTGATCAGG............................................................21200.05100000000100000000
.................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGA-------AAAGTATGTA-----AC........................................................................................................................27200.05100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TCCGACTATATAA------AGT--...............................................................................16200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTA.......................................16200.05100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATCTAGCCAT..................................21200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................ATGTA-----ACAGGCAGAAGAAAG...........................................................................................................20200.05100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATCAATAGCCGAGTCGA...........................................29200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................AGGCAGAAGAAAGCGTTTC.....................................................................................................19200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAG.............................................................................................................24200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCT........................................17200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TATATATTCTTGATCAGGATCAA.......................................................23200.05100000000000001000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGG.....................................................................................................................16200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGAAAG...........................................................................................................15200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................GATTCGTTGA-------AAAGT....................................................................................................................................15200.05100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGGATCAATAGCC..................................................23200.05101000000000000000
................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGA-------AAAGT....................................................................................................................................21200.05100000010000000000
.........................................................................................................................................................................................................................................................................................................................................TCGTTGA-------AAAGTATGTA-----ACAGGCAGAA................................................................................................................27200.05100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTCCGACTATATAA------AGT--ATATATATT......................................................................27200.05100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGAT..........................................23200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAGCGTTTCCGACTATATAA------AGT--...............................................................................23200.05100000000001000000
...............................................................................................................................................................................................................................................................................................................................................A-------AAAGTATGTA-----ACAGGCAGAAGAAAGA..........................................................................................................27200.05100000000100000000
droSec2
TATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATAG----------------------------TTC---T---------------------TTCTATTCTTGTTTTATTAC-----------------------------------TTGTTTGTTGCTCGTA------GAG-T--ACAGGGGTACACTAGATTCGTTGA-------GAAGTATGTATGAGAACAGGCAGAAGGAAGCGTTTCTAACTATATAA------AGT--ATATATATTAATGATCAGGATCAATAGCCGAGTCGATCTGGCTATGTCCGTCTATCCGTATGAACGTC-----------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTATCCGTATGAA...............2150.2010001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCTG.......................................18200.0510010
droYak3
CTGAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTCCAG-------CGGCAGCGGCGGCTCC-----GTGGTCCGACGGAGTTA--------------------------------------------------------------------------------------------------------------GCCCTAAGT---------------------TCCAGT-------TTTAAT------TATACCCGTTACTCGTA------GAG-T--AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTA-----ACAGGCAGAAGGAAGCGTTTCCGACCATATAA------AGT--ATATATATTCTTGATCAGGATCAATAGCCGAGTCGATTTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGTCCGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTA-----ACAGGCAGA.................................................................................................................27203.0561000000000061
.........................................................................................................................................................................................................................................................................................................................................................AGTATGTA-----ACAGGCAGAAGGAAGCGT........................................................................................................26201.2024000000000024
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATTTGGCCATGTC...............................26200.9018000000000018
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCATGTCCGTCTGTCCGTCCG.................24200.8517017000000000
.......................................................................................................................................................................................................................................................................................................CGTA------GAG-T--AAAAGGGTATACTAGAT.......................................................................................................................................................25200.7014014000000000
............................................................................................................................................................................................................................................................................................................................................................ATGTA-----ACAGGCAGAAGGAAGCGT........................................................................................................23200.6513000000000013
...............................................................................................................................................................................................................................................................................TTAAT------TATACCCGTTACTCGTA------GAG-T--A.......................................................................................................................................................................27200.45900000000009
..............................................................................................................................................................................................................................................................................................................................................................GTA-----ACAGGCAGAAGGAAGCGTTTCCGAC.................................................................................................28200.40800800000000
..................................................................TTCCAG-------CGGCAGCGGCGGCTCC-----GTG.........................................................................................................................................................................................................................................................................................................................................................................................2530.33101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTTGATCAGGATCAATAGCCGA................................................26200.30606000000000
..GAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTCCAG-------C................................................................................................................................................................................................................................................................................................................................................................................................................27150.13202000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCTGTCCGTCCGTCTGTCCGT........27200.10202000000000
.......TCAAC------------------------------ATTCAGCC----G--------ACTTTCCAG-------CGGC.............................................................................................................................................................................................................................................................................................................................................................................................................27150.07101000000000
CTGAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTCCAG-------.................................................................................................................................................................................................................................................................................................................................................................................................................28150.07101000000000
CTGAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................26150.07101000000000
.TGAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................26150.07101000000000
....C--TCAAC------------------------------ATTCAGCC----G--------ACTTTCCAG-------C................................................................................................................................................................................................................................................................................................................................................................................................................25150.07101000000000
.TGAC--TCAAC------------------------------ATTCAGCC----G--------ACTT.............................................................................................................................................................................................................................................................................................................................................................................................................................22160.06101000000000
..GAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................23160.06101000000000
.TGAC--TCAAC------------------------------ATTCAGCC----G--------ACTTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................24160.06101000000000
...........................................TTCAGCC----G--------ACTTTCCAG-------CGGCAGCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................27180.06101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAATAGCCGAGTCGA...........................................28200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGAGTCGATTTGGCCATGTCCGTC...........................27200.05101000000000
..................................................................................................................................................................................................................................................................................AT------TATACCCGTTACTCGTA------GAG-T--........................................................................................................................................................................23200.05100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGTCTGTCCGTCCGTCTGTCC..........26200.05100100000000
..............................................................................................................................................................................................................................................................................TTTAAT------TATACCCGTTACTCGTA------GAG-...........................................................................................................................................................................26200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTCCGTCTGTCCGTCTGTCCG.26200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTCTGTCCGTCTGT....18200.05110000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCGAGTCGATTTGGCCATGTCCGTCT..........................29200.05100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATTTGGCCAT..................................24200.05101000000000
.....................................................................................................................................................................................................................................................................................................................................AGATTCGTTGA-------AAAGTATG.................................................................................................................................19200.05101000000000
droEre2
TATG-----------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGTAA----------------------------TAT---CACCTA---------------CAGCCATTT------------------AT------A-------TATAAT------TATACCCGTTACTCGTA-------AG-T--AAAAGGGTATACCAGATCCGGTGA-------AAAGTATGTA-----GCAGACATAAGAAAGCGTTTCCGACCATATAA------AGT--ATATATATTCTTGATCAGAATAAAAAGCCGAGTCGATATGGTCATGTCCATCTGTGCGTCCGTCCGTATG---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 12:17 AM