ID:

dps_117

 Coordinate:

2:5026866-5026925 -

 Confidence:

candidate-rescued

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-49.4 -49.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGACGCTGGCGTCGTCGCCGTCGCCTTCTCTGCCGCTGACGCTGCCGCTGACGATGTGAGGCCAGCCGCTGGCTGCGGCCGCTGTCGGCTGCTTGCCTGCACCCGGTCAGCGTCAGTGTTCATTTCCCCATCGAGTCGGCCACACACGGGCAGGAGGCGT

***********************************..(((((((.(((((((...(((((((.(((.((((((.((....)).)))))).))).)))).)))...))))))).)))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 GSM444067

head

 GSM343916

embryo

 M062

head

 V112

male body		 M059

embryo
..................................................ACGATGTGAGGCCAGCCGCTG......................................................................................... 21 0 1 8.00 8 3 2 0 2 1 0
..................................................ACGATGTGAGGCCAGCCGCT.......................................................................................... 20 0 1 3.00 3 1 2 0 0 0 0
..................................................ACGATGTGAGGCCAGCCGC........................................................................................... 19 0 1 3.00 3 1 1 0 1 0 0
..................................................ACGATGTGAGGCCAGCCG............................................................................................ 18 0 1 2.00 2 1 0 0 0 1 0
..................................................ACGATGTGAGGCCAGCCGCTGGC....................................................................................... 23 0 1 2.00 2 1 0 0 0 0 1
..........................................................................................................................................GCCACACACGGGCAGGAGGCG. 21 0 1 2.00 2 2 0 0 0 0 0
..................................................ACGATGTGAGGCCAGCCGCTT......................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0
.....................................................................................CGGCTGCTTGCCTGCACCCGGTCA................................................... 24 0 1 1.00 1 1 0 0 0 0 0
............................................................................GGCCGCTGTCGGCTGCTTGC................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.........................................................................TGCGGCCGCTGTCGGCTGCTTG................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
....................................................GATGTGAGGCCAGCCGCTGGC....................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................ACGTTGTGAGGCCAGCCGCTGGC....................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1
..................................................ACGATGTGAGGCCAGCCGCTGT........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0
.................................................GACGATGTGAGGCCAGCCGCTGGGT...................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
...............................................................................CGCTGTCGGCTGCTTGCCTGCACCCG....................................................... 26 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................AGTGTTCATTTCCCCATCGAGTCGG..................... 25 0 1 1.00 1 0 0 0 1 0 0
..................................................ACGATGTGAGGCCAGCCGCTGG........................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................CGAGTCGGCCACACACGGGCAGGAGG... 26 0 1 1.00 1 0 0 1 0 0 0
..................................................................................TGTCGGCTGCTTGCCTGCAC.......................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................ATCGAGTCGGCCACACACG............ 19 0 1 1.00 1 0 0 1 0 0 0
.....................................................................................CGGCTGCTTGCCTGCACCCGGTC.................................................... 23 0 1 1.00 1 0 0 0 0 0 1
..................................................ACGATGTGAGGCCAGCCGCTGGCTG..................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................GCCACACACGGGCAGGAGGC.. 20 0 1 1.00 1 1 0 0 0 0 0
..................................................ACGATGTGAGGCCAGCCGCTGGTT...................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
..................................................ACGATGTGAGGCCAGCCGTT.......................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................CCGCGGACGGTGTGAGGC.................................................................................................. 18 2 2 0.50 1 1 0 0 0 0 0
.................CCGTCGCCGTCTCTGCCGCTG.......................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................................AGAGTTCATTTCCCCGTCG........................... 19 2 2 0.50 1 1 0 0 0 0 0
...................................................CGATGTGAGGCCAGCCGTAT......................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0
....................................TGACGCTGCCGGTAACGA.......................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
...............TGCCGTCGCCGTCTCTGCCGCTG.......................................................................................................................... 23 2 20 0.15 3 3 0 0 0 0 0
...........................CTCTTCCGATGACGCTGCCGC................................................................................................................ 21 2 7 0.14 1 1 0 0 0 0 0
............................TCTTCCGATGACGCTGCCGC................................................................................................................ 20 2 8 0.13 1 1 0 0 0 0 0
.......................................CGGTTCCGCTGAAGATGTGA..................................................................................................... 20 3 10 0.10 1 0 0 0 0 1 0
...................................................................GCTGGCTGCGGCCCCTGA........................................................................... 18 2 12 0.08 1 1 0 0 0 0 0
..................................................................................................ACACCCGGTCACCGTCAGA........................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GCTGCGACCGCAGCAGCGGCAGCGGAAGAGACGGCGACTGCGACGGCGACTGCTACACTCCGGTCGGCGACCGACGCCGGCGACAGCCGACGAACGGACGTGGGCCAGTCGCAGTCACAAGTAAAGGGGTAGCTCAGCCGGTGTGTGCCCGTCCTCCGCA

************************************..(((((((.(((((((...(((((((.(((.((((((.((....)).)))))).))).)))).)))...))))))).)))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body
.......................................................................................................................................AGCCGGTGTGTGCCCGTCCTC.... 21 0 1 1.00 1 1
......................................................................................................GGCCGGTCGCAGTCACGAGTA..................................... 21 2 1 1.00 1 1
...............................................................................................................................GGTAGCTCAGCCGGTGTGTG............. 20 0 1 1.00 1 1
........................................................................................................CCAGTCGCAGTCACAAGTAG.................................... 20 1 1 1.00 1 1
.............CAGCTGCAGCCGAAGAGCCGGC............................................................................................................................. 22 3 2 0.50 1 1
........................GAAGACACGGCGACCGCGA..................................................................................................................... 19 2 11 0.18 2 2
...........................................................................................................................AAAGGGTAGCTCAGACGGT.................. 19 2 6 0.17 1 1
.................GGCAGCGGCAGAGACGGC............................................................................................................................. 18 1 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 2:5026816-5026975 - dps_117 candidate-rescued CGACGCTGG------CG------TC---------------GTCGC---CGTCGCCTTCTCTG-CCGCTG----A---CGCTGCCGCTGACGATGTGAGGCCAGCCGCTGGCT-------------GCGGCCGC-------TG----------------------------TCGGCTGCTTGCC--TGCA---------CC--CGG--------TCAGCG------TCAGTGTTCATTTCCCCATCGAGTCGGCCACACA--CGGGCA-----------GGAGGCGT------------
droPer2 scaffold_19:732278-732437 - CGACGCTGG------CG------TC---------------GTCGC---CGTCGCCTTCTCTG-CCGCTG----C---CGCTGACGCTGACGATGTGAGGCCAGCCGCTGGCT-------------GCGGCCGC-------TG----------------------------TCGGCTGCTTGCC--TGCA---------CC--CGG--------TCAGCG------TCAGTGTTCATTTCCCCATCGAGTCGGCCACACA--CGGGCA-----------GGAGGCGT------------
droWil2 scf2_1100000004902:11175864-11175987 - TGACGTCGA------CT------TC---------------G--GTTGCTGCTG------CTG-GT---GC----TGGTGCTGCT-------------------------GCTGCAGTTGCTGTTGGCG-TTTTGGCATTTGGT-T--------------------------TGGTC--------------------------TGG--------CCACAG------TCAGTGTTAATTTCCTCATCGAGTTGGCAACACA--C------------------------------------
droVir3 scaffold_12855:2693621-2693788 - dvi_106 confident CGCAGTCGC------TG------TC---------------G------------------CT-------GT----CGCAGTCGCA-------------------------GCTGCAGTTGACGTCGACAGCGCT-------TGCGGCGCTGCCCGT--TGGCTGCCAGCTGCCGTCTGCTTTCAGCTGCAACGGCCAACGT--CGT-CAGTCG-CCAGTC-----GTCAGTTTTAATTTCCACATCGAGTTAACAACA-T--CACGAG---------------GCG-------------
droMoj3 scaffold_6540:11894784-11894934 - dmo_261 confident CA-CGCTGT------CG------------------------------------------CT-------GT----CGCTACCGCA-------------------------GCTGCAGTCAGCGCTGGCA----------------GCGCTGCCTGTGCTGGCTGCCAGTTGCCGTATGCTTTCAGCTGCAACGGCCAACGT--CGG--------CAGTCG------TCAGTTTTAATTTCCACATCGAGTTAACAACA-T--CACG--------------AAGCGG-------------
droGri2 scaffold_14624:2256914-2257090 + TGACGTCGG------CA------GCGCT------------GTTTC---TGTTGCGTTGGCTGACAGCTG----C---TGCTGCTGCTAGCTGCTTGCTGCTTGCCGCTAGCT----------GCTTGGGCTGC-------AT----------------------------TCAGC----------TGCAACAGCC---AA--CGGGCAA-CGTCAGTCG------TCAGTTTTAATTTCCACATCGAGTTAACAACACA--CGAGAG---GCGGCA--GCAGCAG-------------
droAna3 scaffold_13340:6482871-6483053 + CGTCGACGA------CG------TCGATGTGGCTGCCGCTGCCAC---CGCTGCTGTTGCCA-CTGCTG----C---TGCTGCTGCTGCTGCTGCAGAGCCT--------------TCTGCTGCTTTGGTTGC-------TG----------------------------TTGGCCAATTGCC---------------GT--TGG--------CCAGCG------TCAGTGTTCATTTTCCCATCGAGTCAACAGCACACACGGTCAGGAGCGGCCAGGAAGGAGT------------
droBip1 scf7180000396708:2366141-2366292 - CGCTGCAGT------CGACGACGCCG--------------ACGTC---TG---------CT----GCTA----C---GGGTACTGCTGCCGCTGCAGCGCCT--------------TCTGCTGCTTTGGTTGC-------TG----------------------------TTGGCCAATTGCC---------------GT--TGG--------CCAGCG------TCAGTGTTCATTTTCCCATCGAGTCAACAGCACACACGGTCA-----------GGAGCGGC------------
droKik1 scf7180000302706:2172587-2172707 + C--CGGCGC------TG------CA---------------GTCGA---CG---------TC-------GC----TGCCCTCGCC-------------------------TCTGC---CGCCGAC------TGA-------TG----------------------------TTGGCCGAATGCC---------------TTTTTAG--------CCAGCTTCATCGTCAGTGTTCATTTCCCCATCGAATCGGCAACA-A--CGAGCG-----------G-------------------
droFic1 scf7180000454104:908469-908579 - CGACGTCG-----------------------------------------------------------------------CTGCC-------------------------GCTGCAATCGCCGACGCTCGTTTC-------TGT--------------------------GTTGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------
droEle1 scf7180000491023:503305-503448 - TGACTCTGC------TG------CT---------------GCTGT---TGTTGCTGTTGCTG-ATGTTG----A---TGCTGC----------------------------------TGCTGATGCA----ACTGCATC-TGAGGCGGTGGCTGCGG-------------TCG--CTGCTGCAGTTGC---------------------------GGCG------GTGGA----GGTCCCTTGTAGAACTGGGCACCCG--GCGGCG-----------GAGGAGGT------------
droRho1 scf7180000779228:19070-19178 + CGACGTCG-----------------------------------------------------------------------CTGCC-------------------------GCTGCAGTCGCCGACGTCCGTTTC-------TG----------------------------TTGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTTCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------
droBia1 scf7180000302402:3416414-3416549 + G----CTGGCGTCGCCG------CC---------------GCCGT---CG---------CTG-CC---GC----TGCCGCCGCC-------------------------ACTGCACTCGCCGACGTCCGTTTC-------TG----------------------------TTGGCCAATTGCC---------------GT--GGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCCACA-A--CGAGCG-----------GAAGTCGC------------
droTak1 scf7180000415245:186272-186388 - CGCCGTCGA------CG------TC---------------G--------------------------------------CCGTC-------------------------GCTGCACTTGGCGACGTCCGTTTT-------TCA--------------------------GTTGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------
droEug1 scf7180000409470:253101-253233 + AAACGCAGC------TG------CA---------------GTCGA---CG---------TC-------GC----TGCCA-----------------------GCTGCTCGCTGCAATCGCCGACATTCGTTTC-------TGT-T--------------------------TGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAAACGGCAACA-A--CGAGCG-----------GAAGTCG-------------
dm3 chr3R:5919844-5919974 + TGACGTCGA------CG------CA---------------GTGTT---AG---------CT-------GC----TGCCATCGCT-------------------------GCTGCAGTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------
droSim2 3r:15128586-15128716 - CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GC----TGCCACCGCT-------------------------GCTGCACTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------
droSec2 scaffold_0:15993565-15993695 - CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GC----TGCCACCGCT-------------------------GCTGCACTCGCCGACGTCAGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------
droYak3 3R:9967383-9967541 + CGACGTCGA------CG------CT---------------ACTGC---TGCTGCTGCTGCCG-TTGCTGC----TGCCACCGCT-------------------------GCTGCATTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCGCAGGGGCCCACAG
droEre2 scaffold_4770:15680270-15680417 - CGACGTCGA------CG------CA---------------GGTTT---CG---------CT-------GCTGGCTGCCACCGCT-------------------------GCTGCATTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCGCAGGGGCCCACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGACGCTGG------CG------TC---------------GTCGC---CGTCGCCTTCTCTG-CCGCTG----A---CGCTGCCGCTGACGATGTGAGGCCAGCCGCTGGCT-------------GCGGCCGC-------TG----------------------------TCGGCTGCTTGCC--TGCA---------CC--CGG--------TCAGCG------TCAGTGTTCATTTCCCCATCGAGTCGGCCACACA--CGGGCA-----------GGAGGCGT------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................................ACGATGTGAGGCCAGCCGCTG.............................................................................................................................................................................................2118.0080302021000
........................................................................................ACGATGTGAGGCCAGCCGCT..............................................................................................................................................................................................2013.0030100020000
........................................................................................ACGATGTGAGGCCAGCCGC...............................................................................................................................................................................................1913.0030101010000
........................................................................................ACGATGTGAGGCCAGCCG................................................................................................................................................................................................1812.0020100001000
........................................................................................ACGATGTGAGGCCAGCCGCTGGC...........................................................................................................................................................................................2312.0020110000000
...........................................................................................................................................................................................................................................................GCCACACA--CGGGCA-----------GGAGGCG.............2112.0020200000000
........................................................................................ACGATGTGAGGCCAGCCGCTT.............................................................................................................................................................................................2112.0020000020000
...........................................................................................................................................................................CGGCTGCTTGCC--TGCA---------CC--CGG--------TCA..................................................................................2411.0010100000000
...............................................................................................................................GGCCGC-------TG----------------------------TCGGCTGCTTGC....................................................................................................................2011.0010100000000
...............................................................................................................T-------------GCGGCCGC-------TG----------------------------TCGGCTGCTTG.....................................................................................................................2211.0010100000000
..........................................................................................GATGTGAGGCCAGCCGCTGGC...........................................................................................................................................................................................2111.0010100000000
........................................................................................ACGATGTGAGGCCAGCCGCTGT............................................................................................................................................................................................2211.0010000001000
..................................................................................................................................CGC-------TG----------------------------TCGGCTGCTTGCC--TGCA---------CC--CG..............................................................................................2611.0010000100000
...................................................................................................................................................................................................................................AGTGTTCATTTCCCCATCGAGTCGG..............................................2511.0010001000000
........................................................................................ACGATGTGAGGCCAGCCGCTGG............................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................................................................................................................CGAGTCGGCCACACA--CGGGCA-----------GGAGG...............2611.0010000100000
............................................................................................................................................TG----------------------------TCGGCTGCTTGCC--TGCA---------C...................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................ATCGAGTCGGCCACACA--CG...................................1911.0010000100000
...........................................................................................................................................................................CGGCTGCTTGCC--TGCA---------CC--CGG--------TC...................................................................................2311.0010010000000
........................................................................................ACGATGTGAGGCCAGCCGCTGGCT-------------G............................................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................GCCACACA--CGGGCA-----------GGAGGC..............2011.0010100000000
.........................................................................................CGATGTGAGGCCAGCCGTAT.............................................................................................................................................................................................2050.2010100000000
droPer2
CGACGCTGG------CG------TC---------------GTCGC---CGTCGCCTTCTCTG-CCGCTG----C---CGCTGACGCTGACGATGTGAGGCCAGCCGCTGGCT-------------GCGGCCGC-------TG----------------------------TCGGCTGCTTGCC--TGCA---------CC--CGG--------TCAGCG------TCAGTGTTCATTTCCCCATCGAGTCGGCCACACA--CGGGCA-----------GGAGGCGT------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..........................................CGC---CGTCGCCTTCTCTG-CCGCTG----C---C............................................................................................................................................................................................................................2512.002200000
........................................GTCGC---CGTCGCCTTCTCTG-CC.........................................................................................................................................................................................................................................2112.002200000
.............................................................................................................................................G----------------------------TCGGCTGCTTGCC--TGCA---------CC--C...............................................................................................2111.001010000
........................................................................................ACGATGTGAGGCCAGCCGC...............................................................................................................................................................................................1911.001000001
..........................................................................................GATGTGAGGCCAGCCGCTGT............................................................................................................................................................................................2011.001000001
........................................................................................ACGATGTGAGGCCAGCCGCTG.............................................................................................................................................................................................2111.001000100
..................................................................................................................................................................................TTGCC--TGCA---------CC--CGG--------TCAGCG------TCA......................................................................2311.001000010
...........................................................................................................................................................................................................................................TTTCCCCATCGAGTCGGCCACACA--.....................................2411.001000001
........................................................................................ACGATGTGAGGCCAGCCGCTGG............................................................................................................................................................................................2211.001010000
........................................................................................ACGATGTGAGGCCAGCCG................................................................................................................................................................................................1811.001000010
........................................................................................ACGATGTGAGGCCAGCCGT...............................................................................................................................................................................................1911.001000010
...................................................................................................................................................................................TGCC--TGCA---------CC--CGG--------TCAGCG------TCA......................................................................2211.001010000
droWil2
TGACGTCGA------CT------TC---------------G--GTTGCTGCTG------CTG-GT---GC----TGGTGCTGCT-------------------------GCTGCAGTTGCTGTTGGCG-TTTTGGCATTTGGT-T--------------------------TGGTC--------------------------TGG--------CCACAG------TCAGTGTTAATTTCCTCATCGAGTTGGCAACACA--C------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................................................GGT-T--------------------------TGGTC--------------------------TGG--------CCACAG------TCAGTGTT.................................................................2611.00100010
.........................................................................................................................GTTGGCG-TTTTGGCATTTGGT-T--------------------------TG.............................................................................................................................2411.00100100
......CGA------CT------TC---------------G--GTTGCTGCTG------CT.............................................................................................................................................................................................................................................2011.00100100
TGACGTCGA------CT------TC---------------G--GTTGCTGCT......................................................................................................................................................................................................................................................2311.00101000
droVir3
CGCAGTCGC------TG------TC---------------G------------------CT-------GT----CGCAGTCGCA-------------------------GCTGCAGTTGACGTCGACAGCGCT-------TGCGGCGCTGCCCGT--TGGCTGCCAGCTGCCGTCTGCTTTCAGCTGCAACGGCCAACGT--CGT-CAGTCG-CCAGTC-----GTCAGTTTTAATTTCCACATCGAGTTAACAACA-T--CACGAG---------------GCG-------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................A-------------------------GCTGCAGTTGACGTCGACAGC........................................................................................................................................................................22151.005110400100000000011001000300000000000000000000000000000000000002100000096022800000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGC...............................................................................................................................22134.00343100000100000034000000200010020000000000000000000000000000001100000062112300000
...................................................................................A-------------------------GCTGCAGTTGACGTCGACAGCGC......................................................................................................................................................................24129.00291110000000000000000010900000000000000001000000000000000000002000000053111200000
...................................................................................A-------------------------GCTGCAGTTGACGTCGACAGCG.......................................................................................................................................................................23121.00211100032000000001000000710000000000000000000000000000000000000000000001012100000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCT.................................................................................................................................20118.00181140000000000021000004300000000000000000000000000000000000000000000010001000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTG................................................................................................................................21111.00113010000000000010000001200000000000000000000000000000000000000000000011001000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGA...............................................................................................................................2218.0081010000000000023000000100000000000000000000000000000000000000000000000000000000
...................................................................................A-------------------------GCTGCAGTTGACGTCGACAG.........................................................................................................................................................................2118.0083110000000000000000000100000010000000000000000000000000000000000000000010000000
..................................................................................................................................................GCTGCCCGT--TGGCTGCCAGCTGC...............................................................................................................................2317.0070040000000000000000000000000000000000000000000000000000000000000000001000200000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGT...............................................................................................................................2217.0070000000000000001001000200100000000000000000000000000000000000100000000000100000
..................................................................................................................................................GCTGCCCGT--TGGCTGCCAGCTGT...............................................................................................................................2316.0060000000000000030000001100000000100000000000000000000000000000000000000000000000
...................................................................................A-------------------------GCTGCAGTTGACGTCGACA..........................................................................................................................................................................2016.0061000000000000001000000100000000000000000000000000000000000000100000000101000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGCT..............................................................................................................................2314.0041000000000000011000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................CCCGT--TGGCTGCCAGCTGCCG.............................................................................................................................2114.0041100000000000001000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CCCGT--TGGCTGCCAGCTG................................................................................................................................1814.0041000000000000000000000000000000000000000000000000000000000000000000030000000000
.............................................................................................................GCTGCAGTTGACGTCGACAGCGC......................................................................................................................................................................2313.0030010000000000000000000100000000000000000000000000000000000000000000001000000000
..............................................................................................................CTGCAGTTGACGTCGACAGCGC......................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000020000000000
...................................................................................A-------------------------GCTGCAGTTGACGTCGAC...........................................................................................................................................................................1912.0020010000000000010000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................GGCCAACGT--CGT-CAGTCG-C....................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000200000000
.............................................................................................................GCTGCAGTTGACGTCGACAGC........................................................................................................................................................................2112.0022000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................GCGCTGCCCGT--TGGCTGCCAGCTGCC..............................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000001000100000
......................................................................................................................................................CCCGT--TGGCTGCCAGCTGCCGT............................................................................................................................2212.0020000000000000000000000000000000000000001000000000000000000000000000000000100000
...................................................................................A-------------------------GCTGCAGTTGACGTCGACAGA........................................................................................................................................................................2212.0020010000000000000000000000000000000000000000000000000000000000100000000000000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGTT..............................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
................................................................................................................................................GCGCTGCCCGT--TGGCTGC......................................................................................................................................1821.5030000000000000000000000000000000000000000000000000000000000000000000000030000000
..........................................................................CGCAGTCGCA-------------------------GCTGCAGTTGACGTCGAC...........................................................................................................................................................................2811.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AGTTGACGTCGACAGCGCT-------..............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................AACGGCCAACGT--CGT-CAGTCG-CCAGTC-----..........................................................................2711.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTTCCACATCGAGTTAACAA...........................................2011.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTTCAGCTGCAACGGCCAACGT--CGT-CA..........................................................................................2711.0010000000000000000000000010000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGCCGTCTGCTTTCAGCTGC..............................................................................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................CGCA-------------------------GCTGCAGTTGACGTCGACAGCGC......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
.........................................................................................................................................................................................................................................AATTTCCACATCGAGTTAAC.............................................2011.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GCTGCAGTTGACGTCGACAGCGCT-------..............................................................................................................................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GCTGCCCGT--TGGCTGCCAGCTGG...............................................................................................................................2311.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGCC..............................................................................................................................2311.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................A-------------------------GCTGCAGTTGACGTCGACAGCGCT-------..............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................TGCCCGT--TGGCTGCCAGCTGCCGTCT..........................................................................................................................2611.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGAA..............................................................................................................................2311.0010000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................GTCGCA-------------------------GCTGCAGTTGACGTCGACA..........................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGC..................................................................................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CGCAGTCGCA-------------------------GCTGCAGTTGACGT...............................................................................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GCTGCCCGT--TGGCTGCCAGCTGCT..............................................................................................................................2411.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGCTT.............................................................................................................................2411.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TGCCCGT--TGGCTGCCAGCT.................................................................................................................................1911.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CCGT--TGGCTGCCAGCTGCCGT............................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GCTGCAGTTGACGTCGACAGCG.......................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TCGCA-------------------------GCTGCAGTTGACGTCGAC...........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................TGCGGCGCTGCCCGT--TGGCTGC......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................TGCCCGT--TGGCTGCCAGCTGT...............................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................AGTTAACAACA-T--CACGAG---------------GC..............2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................A-------------------------GCTGCAGTTGACGTCGACAGCC.......................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTGCA..............................................................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GTTAACAACA-T--CACGAG---------------GCG-------------2011.0010000010000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TCGCA-------------------------GCTGCAGTTGACGTC..............................................................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................ACGGCCAACGT--CGT-CAGTCG-CC...................................................................................2211.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................CGCA-------------------------GCTGCAGTTGACGTCGACAG.........................................................................................................................................................................2411.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAGCTT................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................AACGT--CGT-CAGTCG-CCAGTC-----GTCAGT....................................................................2611.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................GCCCGT--TGGCTGCCAGCTGCCG.............................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................TGCCCGT--TGGCTGCCAGCTGC...............................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TGCCCGT--TGGCTGCCAGCG.................................................................................................................................1920.5011000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GT----CGCAGTCGCA-------------------------GCTGCA.......................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................CTGCCCGT--TGGCTGCCAAA..................................................................................................................................19100.1010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......GC------TG------TC---------------G------------------CT-------GT----CGCAGTC.........................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000100000
......CGC------TG------TC---------------G------------------CT-------GT----CGCAGT..........................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000010000000000000000000000000000000000000000
droMoj3
CA-CGCTGT------CG------------------------------------------CT-------GT----CGCTACCGCA-------------------------GCTGCAGTCAGCGCTGGCA----------------GCGCTGCCTGTGCTGGCTGCCAGTTGCCGTATGCTTTCAGCTGCAACGGCCAACGT--CGG--------CAGTCG------TCAGTTTTAATTTCCACATCGAGTTAACAACA-T--CACG--------------AAGCGG-------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCAG..................................................................................................................................................................................21117.00171700000
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCA...................................................................................................................................................................................20116.00161301101
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCAGC.................................................................................................................................................................................22114.00141400000
.............................................................................................................................................................TGGCTGCCAGTTGCCGTATGCT.......................................................................................................................22110.00101000000
.............................................................................................................................................................TGGCTGCCAGTTGCCGTATG.........................................................................................................................2019.009600201
.............................................................................................................................................................TGGCTGCCAGTTGCCGTATGCTT......................................................................................................................2318.008800000
.............................................................................................................................................................TGGCTGCCAGTTGCCGTATGC........................................................................................................................2116.006501000
.............................................................................................................................................................TGGCTGCCAGTTGCCGTATGCTTT.....................................................................................................................2416.006600000
..........................................................................CGCTACCGCA-------------------------GCTGCAGTC....................................................................................................................................................................................1915.005400100
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCAGCG................................................................................................................................................................................2313.003300000
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCAGCGCT..............................................................................................................................................................................2512.002200000
............................................................................................................................................................CTGGCTGCCAGTTGCCGTATGC........................................................................................................................2212.002200000
.............................................................................................................................................................TGGCTGCCAGTTGCCGTATGCTTA.....................................................................................................................2412.002100100
............................................................................................................................................................CTGGCTGCCAGTTGCCGTATGCTAA.....................................................................................................................2511.001100000
...........................................................................GCTACCGCA-------------------------GCTGCAGTCAGC.................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................GCTGCAACGGCCAACGT--CGG--------CAGTC................................................................................2511.001100000
......................................................................................................................................................................................................................................TTTAATTTCCACATCGAGTT................................................2011.001000010
.............................................................................................................................................................TGGCTGCCAGTTGCCGTAT..........................................................................................................................1911.001100000
..............................................................................................................................................................GGCTGCCAGTTGCCGTATGCTTA.....................................................................................................................2311.001100000
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCAGCGCTGG............................................................................................................................................................................2711.001100000
........................................................................................................................................................TGTGCTGGCTGCCAGTTGCCG.............................................................................................................................2111.001000100
......................................................................................................................................................................................................................................................AGTTAACAACA-T--CACG--------------AAGCG..............2111.001000001
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCAGCGCTGGC...........................................................................................................................................................................2811.001100000
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCAGT.................................................................................................................................................................................2211.001100000
.....................................................................T----CGCTACCGCA-------------------------GCTGCAGTC....................................................................................................................................................................................2011.001000100
............................................................................................................................................................CTGGCTGCCAGTTGCCGTATG.........................................................................................................................2111.001000100
..............................................................................................................................................................GGCTGCCAGTTGCCGTATGCTT......................................................................................................................2211.001100000
.........................................................................................................................................................................................................................................................TAACAACA-T--CACG--------------AAGCGG-------------1911.001000001
........................................................................................................................................................TGTGCTGGCTGCCAGTTGC...............................................................................................................................1911.001100000
.............................................................................TACCGCA-------------------------GCTGCAGTCAGCGCT..............................................................................................................................................................................2211.001100000
............................................................................................................................................................CTGGCTGCCAGTTGCCGTATGCTTT.....................................................................................................................2511.001100000
............................................................................................................................................................CTGGCTGCCAGTTGCCGTATGCTT......................................................................................................................2411.001100000
..........................................................................CGCTACCGCA-------------------------GCTGCAGTCT...................................................................................................................................................................................2020.501100000
droGri2
TGACGTCGG------CA------GCGCT------------GTTTC---TGTTGCGTTGGCTGACAGCTG----C---TGCTGCTGCTAGCTGCTTGCTGCTTGCCGCTAGCT----------GCTTGGGCTGC-------AT----------------------------TCAGC----------TGCAACAGCC---AA--CGGGCAA-CGTCAGTCG------TCAGTTTTAATTTCCACATCGAGTTAACAACACA--CGAGAG---GCGGCA--GCAGCAG-------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................TTGCGTTGGCTGACAGCTG----C---T............................................................................................................................................................................................................................2112.00211
..................................................TTGCGTTGGCTGACAGCTG----C---TG...........................................................................................................................................................................................................................2211.00110
..................................................TTGCGTTGGCTGACAGCTG----C---TGC..........................................................................................................................................................................................................................2311.00110
................................................................................................CTGCTTGCCGCTAGCT----------GCTTGG..........................................................................................................................................................................2211.00110
droAna3
CGTCGACGA------CG------TCGATGTGGCTGCCGCTGCCAC---CGCTGCTGTTGCCA-CTGCTG----C---TGCTGCTGCTGCTGCTGCAGAGCCT--------------TCTGCTGCTTTGGTTGC-------TG----------------------------TTGGCCAATTGCC---------------GT--TGG--------CCAGCG------TCAGTGTTCATTTTCCCATCGAGTCAACAGCACACACGGTCAGGAGCGGCCAGGAAGGAGT------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....GACGA------CG------TCGATGTGGCTGC......................................................................................................................................................................................................................................................................2011.001000001
.........................................................................................................................................................................................................................................................CAACAGCACACACGGTCAGGAG...........................2211.001000001
......................................................................................................................................................................................................................................GTTCATTTTCCCATCGAGTCAACAGC..........................................2611.001010000
.................................................................................................................................................................................................................................................................CACACGGTCAGGAGCGGCCAGGA..................2311.001100000
..................................................................................................GCCT--------------TCTGCTGCTTTGGTTGC-------TG----------------------------TTG.............................................................................................................................2611.001001000
...CGACGA------CG------TCGATGTGGCTGC......................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................GCACACACGGTCAGGAGCGGCCAGGAAG................2811.001000001
................................................................................................................................................................................................................................................................ACACACGGTCAGGAGCGGCCAGGAAGGA..............2811.001010000
...................................................................................................................................................................................................................................................................CACGGTCAGGAGCGGCCAGT...................2011.001100000
.....ACGA------CG------TCGATGTGGCTGCCGCTGCCA..............................................................................................................................................................................................................................................................2711.001100000
.......................................................GTTGCCA-CTGCTG----C---TGCTGC.......................................................................................................................................................................................................................2040.251010000
droBip1
CGCTGCAGT------CGACGACGCCG--------------ACGTC---TG---------CT----GCTA----C---GGGTACTGCTGCCGCTGCAGCGCCT--------------TCTGCTGCTTTGGTTGC-------TG----------------------------TTGGCCAATTGCC---------------GT--TGG--------CCAGCG------TCAGTGTTCATTTTCCCATCGAGTCAACAGCACACACGGTCA-----------GGAGCGGC------------SizeHit CountTotal NormTotal
No Reads
droKik1
C--CGGCGC------TG------CA---------------GTCGA---CG---------TC-------GC----TGCCCTCGCC-------------------------TCTGC---CGCCGAC------TGA-------TG----------------------------TTGGCCGAATGCC---------------TTTTTAG--------CCAGCTTCATCGTCAGTGTTCATTTCCCCATCGAATCGGCAACA-A--CGAGCG-----------G-------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGACGTCG-----------------------------------------------------------------------CTGCC-------------------------GCTGCAATCGCCGACGCTCGTTTC-------TGT--------------------------GTTGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGACTCTGC------TG------CT---------------GCTGT---TGTTGCTGTTGCTG-ATGTTG----A---TGCTGC----------------------------------TGCTGATGCA----ACTGCATC-TGAGGCGGTGGCTGCGG-------------TCG--CTGCTGCAGTTGC---------------------------GGCG------GTGGA----GGTCCCTTGTAGAACTGGGCACCCG--GCGGCG-----------GAGGAGGT------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGACGTCG-----------------------------------------------------------------------CTGCC-------------------------GCTGCAGTCGCCGACGTCCGTTTC-------TG----------------------------TTGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTTCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------SizeHit CountTotal NormTotal
No Reads
droBia1
G----CTGGCGTCGCCG------CC---------------GCCGT---CG---------CTG-CC---GC----TGCCGCCGCC-------------------------ACTGCACTCGCCGACGTCCGTTTC-------TG----------------------------TTGGCCAATTGCC---------------GT--GGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCCACA-A--CGAGCG-----------GAAGTCGC------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGCCGTCGA------CG------TC---------------G--------------------------------------CCGTC-------------------------GCTGCACTTGGCGACGTCCGTTTT-------TCA--------------------------GTTGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAACGCAGC------TG------CA---------------GTCGA---CG---------TC-------GC----TGCCA-----------------------GCTGCTCGCTGCAATCGCCGACATTCGTTTC-------TGT-T--------------------------TGGCCAATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAAACGGCAACA-A--CGAGCG-----------GAAGTCG-------------SizeHit CountTotal NormTotal
No Reads
dm3
TGACGTCGA------CG------CA---------------GTGTT---AG---------CT-------GC----TGCCATCGCT-------------------------GCTGCAGTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCCGT........................................................................................................................................................................22128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000010000100000002000000000000011010100202200001100000001000001031000040
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCCG.........................................................................................................................................................................21122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000010000010100000100000000010000000100200000000100200000010121001010
TGACGTCGA------CG------CA---------------GTGTT---AG---------CT-------......................................................................................................................................................................................................................................22118.0018000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000100001001020001100210100000301000000
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCC..........................................................................................................................................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000100052211000000
TGACGTCGA------CG------CA---------------GTGTT---AG---------C..............................................................................................................................................................................................................................................21114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000001001000000000000100000000000000001100000000010000000001000000000000000001000121000000
TGACGTCGA------CG------CA---------------GTGTT---AG---------CT-------GC----................................................................................................................................................................................................................................2419.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000000000000000000000001000000000000001000200000000000010000010
.............................................................................................................................................................................................................................................................AACA-A--CGAGCG-----------GAAGTCG-------------1817.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000001000000000010100000000000100000000000000
TGACGTCGA------CG------CA---------------GTGTT---AG---------CT-------G.....................................................................................................................................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010030000
..................................................................................................................................................................................................................................................ATCGAGTCGGCAACA-A--CGA..................................1916.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
TGACGTCGA------CG------CA---------------GTGTT---AG---------...............................................................................................................................................................................................................................................2015.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAG.................................1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................GCAACA-A--CGAGCG-----------GAAGTCG-------------2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000100100000000000000000
...........................................................................................................................................................................................................................................................GCAACA-A--CGAGCG-----------GAAGT...............1814.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000
.....................................................................................................................CGCCGACGTCCGTTTC-------TGT-T--------------------------TGGC...........................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCCGTT.......................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000001000000000000000000000000010000
............................................................................................................................................TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------.....................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TCATTTCCCCATCGAGTCGGC.............................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000020
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------G...................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................AGTGTTCATTTCCCCATCGAG..................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
........................................GTGTT---AG---------CT-------GC----TGCCATCGCT-------------------------.............................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCCGTTA......................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCCGC........................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010
..........................................................................................................................................................................................................................T------TCAGTGTTCATTTCCCCATCG....................................................2212.002000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................GTCGGCAACA-A--CGAGCG-----------GA..................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................T-------------------------GCTGCAGTCGCCGACGTC...........................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010
...................................................................................................................................................................................................................................................TCGAGTCGGCAACA-A--CGA..................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CCATCGCT-------------------------GCTGCAGTCGCCG................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................TTCATTTCCCCATCGAGTCGG..............................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................ATCGCT-------------------------GCTGCAGTCGCC.................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................CATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTT.................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................T--TGG--------CCAGCT------TCAGTGTTCAT..............................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCCC.........................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................AGCT------TCAGTGTTCATTTCCCC........................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................TCGCT-------------------------GCTGCAGTCGCCG................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................C---------------GT--TGG--------CCAGCT------TCAGTGT..................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....TCGA------CG------CA---------------GTGTT---AG---------CT-------GC----TGCCATCGC.......................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GAAG................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GGCAACA-A--CGAGCG-----------GAAG................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................GGCAACA-A--CGAGCG-----------GAAGTCG-------------2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................CAGCT------TCAGTGTTCATTTCC..........................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................AGTGTTCATTTCCCCATCGAGTCGGCA............................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..ACGTCGA------CG------CA---------------GTGTT---AG---------CT-------GC----................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CCCATTGCC---------------GT--TGG--------CCAGCT------T........................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GAAGT...............2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................C----TGCCATCGCT-------------------------GCTGCAGTCG...................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................T-------------------------GCTGCAGTCGCCGACGTCCGTTT......................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................CCATCGCT-------------------------GCTGCAGTCGCCGT...............................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GG--------CCAGCT------TCAGTGTTCAT..............................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CGACGTCCGTTTC-------TGT-T--------------------------TGGC...........................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..............................................................................ATCGCT-------------------------GCTGCAGTCGCCGAC..............................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................CGACGTCCGTTTC-------TGT-T--------------------------TG.............................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................CATCGCT-------------------------GCTGCAGTCGCCGAC..............................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CT-------------------------GCTGCAGTCGCCGACGTCCG.........................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................AGTCGGCAACA-A--CGAGCG-----------GAA.................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GCTGCAGTCGCCGACGTCCGT........................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................CCCATCGAGTCGGCAACA-A--C....................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................CCCATCGAGTCGGCAACA-A--CGAG.................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................CAACA-A--CGAGCG-----------GAAGTC..............1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................ATCGAGTCGGCAACA-A--CGAGCG-----------GAAG................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................CATCGAGTCGGCAACA-A--CGAGCG-----------GAA.................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CC---------------GT--TGG--------CCAGCT------TCAGTGTTC................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................T-------GC----TGCCATCGCT-------------------------GCTGCAG......................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CGCT-------------------------GCTGCAGTCGCCGACGT............................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AGTGTTCATTTCCCCATCGAGT.................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CT-------------------------GCTGCAGTCGCCGACGTCC..........................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................ATTGCC---------------GT--TGG--------CCAGCT------TCAGTGT..................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................CCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGT...............2911.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GA..................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
TGACGTCGA------CG------CA---------------GTGTT---AG---------CT-------AT----C...............................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGACGTCGA------CG------CA---------------GTGTT---AG---------CT-------GC----T...............................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AGTGTTCATTTCCCCATCGA...................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GGCAACA-A--CGAGCG-----------GAAGT...............1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TCCCCATCGAGTCGGCAACA-........................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................GTTTC-------TGT-T--------------------------TGGCCCATTGC....................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------....................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................................................................................................................................................................GTCGGCAACA-A--CGAGCG-----------G...................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................ATCGAGTCGGCAACA-A--CGAGC................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.......................................................................................................................CCGACGTCCGTTTC-------TGT-T--------------------------TGG............................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CT-------------------------GCTGCAGTCGCCGACGT............................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..............................................................................................................................................T-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGC................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..ACGTCGA------CG------CA---------------GTGTT---AG---------CT-------G.....................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................ATTGCC---------------GT--TGG--------CCAGCT------TCAGTG...................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................TCGGCAACA-A--CGAGCG-----------GAAG................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CATTTCCCCATCGAGTCGG..............................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GC----TGCCACCGCT-------------------------GCTGCACTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................T-------------------------GCTGCACTCGCCGACGTCCG.........................................................................................................................................................................21120.0020125110000000001000
CGACGTCGA------CG------CA---------------GTGTT---CG---------C..............................................................................................................................................................................................................................................21110.001064000000000000000
...................................................................................T-------------------------GCTGCACTCGCCGACGTCCGT........................................................................................................................................................................2217.00701000050000100000
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------......................................................................................................................................................................................................................................2215.00522000001000000000
CGACGTCGA------CG------CA---------------GTGTT---CG---------...............................................................................................................................................................................................................................................2013.00303000000000000000
.......................................................................................................................................................................................................................................................GTCGGCAACA-A--CGAGCG-----------GAAGT...............2213.00310200000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GA..................2212.00202000000000000000
...................................................................................................................................................................................................................................................TCGAGTCGGCAACA-A--CGA..................................1812.00200200000000000000
...........................................................................................................................................................................................................................................................GCAACA-A--CGAGCG-----------GAAGTCG-------------2012.00220000000000000000
...................................................................................T-------------------------GCTGCACTCGCCGACGTCC..........................................................................................................................................................................2012.00201000100000000000
.......................................................................................................................................................................................................................................................GTCGGCAACA-A--CGAGCG-----------GAAG................2111.00101000000000000000
........................................................................................................................CGACGTCCGTTTC-------TGT-T--------------------------TGGCC..........................................................................................................................2211.00110000000000000000
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GT----................................................................................................................................................................................................................................2411.00110000000000000000
.............................................................................................................................................................................................................................................TCCCCATCGAGTCGGCAACA-A--CGAGC................................2611.00100010000000000000
...............................................................................................................................................................................................................................................CCCATCGAGTCGGCAACA-A--CGAGC................................2411.00101000000000000000
CGACGTCGA------CG------CA---------------GTGTT---CG---------CC-------......................................................................................................................................................................................................................................2211.00101000000000000000
............................................................................................................................................................................................................................................................CAACA-A--CGAGCG-----------GAAGTC..............1811.00110000000000000000
...............................................................................................................TGCACTCGCCGACGTCCG.........................................................................................................................................................................1811.00100000100000000000
..........................................................................................................................................................................................................................................................GGCAACA-A--CGAGCG-----------GAAG................1811.00101000000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GAAGC...............2511.00110000000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GAAGT...............2511.00110000000000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGC................................1911.00110000000000000000
...............................................................................................................................................................................................................................................CCCATCGAGTCGGCAACA-A--CGAGCG-----------GAA.................2811.00110000000000000000
............................................................T-------GC----TGCCACCGCT-------------------------GA...........................................................................................................................................................................................15200.7014000000000014000000
.................................................G---------CT-------GC----TGCCACCGCT-------------------------GA...........................................................................................................................................................................................17130.46600000000006000000
...........................................................CT-------GC----TGCCACCGCT-------------------------GA...........................................................................................................................................................................................16200.15300000000012000000
droSec2
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GC----TGCCACCGCT-------------------------GCTGCACTCGCCGACGTCAGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCG-------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................T-------------------------GCTGCACTCGCCGACGTCAG.........................................................................................................................................................................211149.001491769360
...................................................................................T-------------------------GCTGCACTCGCCGACGTCAGT........................................................................................................................................................................22127.002771217
...................................................................................T-------------------------GCTGCACTCGCCGACGTCA..........................................................................................................................................................................20217.0034111805
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GC----................................................................................................................................................................................................................................24113.00132911
CGACGTCGA------CG------CA---------------GTGTT---CG---------...............................................................................................................................................................................................................................................20112.00123801
...................................................................................T-------------------------GCTGCACTCGCCGACGTCAGA........................................................................................................................................................................2228.50173806
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------......................................................................................................................................................................................................................................2216.0060411
CGACGTCGA------CG------CA---------------GTGTT---CG---------A..............................................................................................................................................................................................................................................2116.0061500
CGACGTCGA------CG------CA---------------GTGTT---CG---------C..............................................................................................................................................................................................................................................2115.0051301
..................................................................................CT-------------------------GCTGCACTCGCCGACGTCA..........................................................................................................................................................................2112.0021001
CGACGTCGA------CG------CA---------------GTGTT---C.........................................................................................................................................................................................................................................................1912.0022000
.GACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GA----................................................................................................................................................................................................................................2311.0010100
........................................................................................................................................................................................................................................TCATTTCCCCATCGAGTCGG..............................................2011.0010010
.........................................................................................................................................................................................................................................................CGGCAACA-A--CGAGCG-----------GAAGTCG-------------2211.0011000
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GA----................................................................................................................................................................................................................................2411.0010100
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAG.................................1811.0011000
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------G.....................................................................................................................................................................................................................................2311.0010001
..ACGTCGA------CG------CA---------------GTGTT---CG---------...............................................................................................................................................................................................................................................1811.0011000
...................................................................................................................................................................................................................................................TCGAGTCGGCAACA-A--CGAGCG-----------G...................2211.0011000
.GACGTCGA------CG------CA---------------GTGTT---CG---------C..............................................................................................................................................................................................................................................2011.0010100
..................................................................................................................................................................................TTGCC---------------GT--TGG--------CCAGCT------TCAGTGT..................................................................2311.0010001
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GT----................................................................................................................................................................................................................................2411.0010100
.............................................................................................................GCTGCACTCGCCGACGTCA..........................................................................................................................................................................1921.0022000
...............................................................................................................................................................................................................................................CCCATCGAGTCGGCAACA-A--CGAG.................................2311.0010100
...................................................................................................................................................................................................................................................TCGAGTCGGCAACA-A--CGA..................................1811.0010010
...................................................................................T-------------------------GCTGCACTCGCCGACGTCAGTT.......................................................................................................................................................................2311.0010001
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAGCG-----------GA..................2211.0010001
..ACGTCGA------CG------CA---------------GTGTT---CG---------CT-------G.....................................................................................................................................................................................................................................2111.0010100
...........................................................................................................................................................................................................................................TTTCCCCATCGAGTCGGCAACA-........................................2211.0011000
.............................................................................................................GCTGCACTCGCCGACGTCAG.........................................................................................................................................................................2011.0010001
CGACGTCGA------CG------CA---------------GTGTT---CA---------...............................................................................................................................................................................................................................................2011.0010001
..................................................................................................................................................................................................................................................ATCGAGTCGGCAACA-A--CGAG.................................2011.0011000
..ACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GC----................................................................................................................................................................................................................................2211.0010100
..........................................................................................................................................................................................................................................................GGCAACA-A--CGAGCG-----------GAAGT...............1911.0010001
.............................................................................................................GCTGCACTCGCCGACGTCAGTTT......................................................................................................................................................................2311.0011000
.............................................................................................................GCTGCACTCGCCGACGTCAC.........................................................................................................................................................................2020.5011000
...................................................................................T-------------------------GCTGCACTCGCCGACGTCAT.........................................................................................................................................................................2120.5010001
...................................................................................T-------------------------GCTGCACTCGCCGACGTC...........................................................................................................................................................................1920.5011000
CGACGTCGA------CG------CA---------------GTGTT---CG---------CT-------GC----AAT.............................................................................................................................................................................................................................2720.5010100
...................................................................................T-------------------------GCTGCACTCGCCGACGTT...........................................................................................................................................................................1920.5011000
droYak3
CGACGTCGA------CG------CT---------------ACTGC---TGCTGCTGCTGCCG-TTGCTGC----TGCCACCGCT-------------------------GCTGCATTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCGCAGGGGCCCACAGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................................................................................................................................CGGCAACA-A--CGAGCG-----------GAAGTCGCAGGGGC......2912.00220000000000
..................................................................................CT-------------------------GCTGCATTCGCCGACGTCC..........................................................................................................................................................................2111.00101000000000
...........................................................................GCCACCGCT-------------------------GCTGCATTCGCCGAC..............................................................................................................................................................................2411.00110000000000
...................................................................................T-------------------------GCTGCATTCGCCGACGTCCG.........................................................................................................................................................................2111.00101000000000
........................................................................................................................................................................................................................................................TCGGCAACA-A--CGAGCG-----------GA..................1811.00100100000000
..................................................................................CT-------------------------GCTGCATTCGCCGACGTCCG.........................................................................................................................................................................2211.00100000010000
.........................................................................................................................GACGTCCGTTTC-------TGT-T--------------------------TGGCCC.........................................................................................................................2211.00101000000000
....................................................................................................................................................................................................................................................CGAGTCGGCAACA-A--CGAG.................................1811.00100001000000
......................................................................................................................................................................................................................................................................................GAAGTCGCAGGGGCCCACA.1911.00100000010000
...........................................................................................................................CGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------....................................................................................................2611.00101000000000
...............................................................................................................................................................................................................................................................CA-A--CGAGCG-----------GAAGTCGCAGGG........2111.00100100000000
.........................................................................................................................................................................................................................................................CGGCAACA-A--CGAGCG-----------GAAGTCGCAGGG........2711.00100100000000
.............................................................................................................GCTGCATTCGCCGACGTCCGT........................................................................................................................................................................2111.00101000000000
...................................................................................T-------------------------GCTGCATTCGCCGACGTCCGT........................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................GTTCATTTCCCCATCGAGTCGGCA............................................2411.00101000000000
.........................................................................................................................................................................................................................................CATTTCCCCATCGAGTCGGCAACA-A--C....................................2611.00110000000000
..................................................................................................................................................................................................................................CAGTGTTCATTTCCCCATCGAGTCGGC.............................................2711.00100000010000
CGACGTCGA------CG------CT---------------ACTGC---TGCTGC....................................................................................................................................................................................................................................................2411.00100100000000
..........................................................................................................................................................................................................................................................GGCAACA-A--CGAGCG-----------GAAGTCG.............2111.00100100000000
droEre2
CGACGTCGA------CG------CA---------------GGTTT---CG---------CT-------GCTGGCTGCCACCGCT-------------------------GCTGCATTCGCCGACGTCCGTTTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------CCAGCT------TCAGTGTTCATTTCCCCATCGAGTCGGCAACA-A--CGAGCG-----------GAAGTCGCAGGGGCCCACAGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................................................................................................................................................A--CGAGCG-----------GAAGTCGCAGGGGC......2112.0020001010
.............................................................................................................................................................................................................................................................AACA-A--CGAGCG-----------GAAGTCGCAGGG........2311.0010010000
...................................................................................................................................................................................................................................AGTGTTCATTTCCCCATCGAGTCGGC.............................................2611.0010100000
...................................................................................................................................................................................................................................AGTGTTCATTTCCCCATCGAGTCGGCA............................................2711.0010000100
..................................................................................................................................TTC-------TGT-T--------------------------TGGCCCATTGCC---------------GT--TGG--------C....................................................................................2511.0010001000
..................................................................................................................................................................................TTGCC---------------GT--TGG--------CCAGCT------TCAGTGTT.................................................................2411.0011000000
............................................................................................................................................................................................................................................TTCCCCATCGAGTCGGCAACA-A--CGAG.................................2611.0010000100
.........................................................................................................................................................................................................................................................CGGCAACA-A--CGAGCG-----------GAAGTCGCAGGG........2711.0011000000
.....................................................................................................................................................................................................................................................................CGAGCG-----------GAAGTCGCAGGG........1811.0010000010
.....................................................................................................................................................................................................................................................................CGAGCG-----------GAAGTCGCAGGGGCCC....2211.0010000010
....................................................................................................................................................................................................................................GTGTTCATTTCCCCATCGA...................................................1911.0011000000
.......................................................................................................................................................................................................................AGCT------TCAGTGTTCATTTCCCCATCGAG..................................................2711.0010000100

Generated: 10/20/2015 at 10:13 PM