ID:

dps_1165

 Coordinate:

3:11580858-11581008 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intron [Dpse\GA15662-in]; CDS [Dpse\GA15662-cds]; exon [dpse_GLEANR_14153:4]; intron [Dpse\GA15662-in]

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######################################------------
CAAATGCAATGCATATTTGATACCGGTCGAGATCGTAACCCTCCATACTCCGACAGAAATATCCTATCTCTATCATACTTATTCGAAACTCGTATCTAGTAGACGCCACGCTGCACGTCCACCAATGTAAATATGCTAACGCCTTTGTTTCTTTTTCTCTCTCTCTCTCTCTGTTTCTCCCCCCGTCTCCCGCATATCTAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGTAGAGTT
**************************************************.((((((..................((((....(((...))).....))))((((..........)))).........(((((.((....))...)))))...................))))))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902012
CNS imaginal disc
 V112
male body		 GSM343916
embryo
 M062
head
.............TATTTGATACCGGTCGAGATC......................................................................................................................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0
.......................................................................................................................................................................................................AGTGGTGGCGTCAAGTTCTCTGATC........................... 25 0 1 2.00 2 0 0 0 2 0 0
............ATATTTGATACCGGTCG.............................................................................................................................................................................................................................. 17 0 1 2.00 2 0 0 2 0 0 0
........................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGA.............. 21 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGGTAAGT...... 25 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGAGGC........... 24 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGC........... 20 1 1 1.00 1 0 0 0 0 1 0
..........................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCT.......................... 23 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................................................................................................CTCTGATCTGACCGAGGAAGAGGC........... 24 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCTG......................... 24 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................GTTGGCGTCAAGTTCTCTGATCTGACC...................... 27 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................TGATCTGACCGAGAAAGA.............. 18 0 1 1.00 1 1 0 0 0 0 0
............ATATTTGATACCGGTCGAGAT.......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGATCTGACCGAGAAAGAGGCGTA........ 24 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................CTCTGATCTGACCGAGAAA................ 19 0 1 1.00 1 1 0 0 0 0 0
...........................CGAGATCGTAACCCTCCATACTTC........................................................................................................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................................................................................CAGTGGTGGCGTCAAGTTCTCTGAT............................ 25 1 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................GTTCTCTGATCTGACCGAGAAAGAG............. 25 0 1 1.00 1 1 0 0 0 0 0
..................................GTAACCCTCCATACTCCGACA.................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................................................................................ACTCAGTGGTGGCGTCAAGTT................................... 21 3 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................ACTCAGTGGTGGCGTCAAGTTC.................................. 22 3 2 0.50 1 0 0 0 0 0 1
.............................................................................................................................................................................................................................ATCTGACCGAGAAAGAGGCG.......... 20 2 3 0.33 1 0 0 1 0 0 0
.................................................................................................................................................TGATTCTTTTTCTCTCTCCC...................................................................................... 20 2 19 0.26 5 0 1 0 0 0 4
....................................................................................................................................................................................................CTCAGTGGTGGCGTCAAGTT................................... 20 3 4 0.25 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TGAGCTGACCGCGGAAGAGG............ 20 3 14 0.14 2 2 0 0 0 0 0
..............................................................................................................................................................................................CACATTTCTACTGGTGGCG.......................................... 19 3 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................ATATACTGACGCCTCTGTT...................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GTTTACGTTACGTATAAACTATGGCCAGCTCTAGCATTGGGAGGTATGAGGCTGTCTTTATAGGATAGAGATAGTATGAATAAGCTTTGAGCATAGATCATCTGCGGTGCGACGTGCAGGTGGTTACATTTATACGATTGCGGAAACAAAGAAAAAGAGAGAGAGAGAGAGACAAAGAGGGGGGCAGAGGGCGTATAGATCACCACCGCAGTTCAAGAGACTAGACTGGCTCTTTCTCCCATTCATCTCAA
**************************************************.((((((..................((((....(((...))).....))))((((..........)))).........(((((.((....))...)))))...................))))))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 GSM343916
embryo
...............................................................................................................ACGTGCAGGTGGTTACATTTA....................................................................................................................... 21 0 1 1.00 1 1 0 0
........................CCAGCTCTAGTATTGGAAAGTA............................................................................................................................................................................................................. 22 3 3 0.33 1 0 1 0
.....................................................GTCTTTAGAGTAGAGAGATA.................................................................................................................................................................................. 20 3 15 0.07 1 1 0 0
...............................................................................................................................................................AGAGAGAGAGAGACAAAG.......................................................................... 18 0 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:11580808-11581058 - dps_1165 CAAATGCAAT-------GC-ATATTTGATACCGGTCGAGA-TCGTAACCCTCCATA-----------CTC----------------------C-GACAGAAATATCCTATCTCTATCATACTTATTCGAAACT--------------CG------TATCTAGTAGACGCCA-----CG-----C--TGCACGTCCACCA---AT-G--TAAATATGCTAACGCCTT------------T-GTTTCTTTTTCTCTCTCT-CTCTCTC---TGTTTCTC-CCCCCG---TCTCCC---------GCA-----TATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TT
droPer2 scaffold_4:6979881-6980126 - dpe_1638 CAAATGCAAT-------GC-ATATTTGATACCGGTCGAGA-TCGTAACCCTCCATA-----------CTC----------------------C-GACAGAAATATCCTATCTCTATCATACTTATTCGAAACT--------------CG------TATCTAGTAGACGCCA-----CG-----C--TGCACGTCCACCA---AT-G--TAAATATGCTAATGCCTT------------T-GTTTCTTTTT----CTCT-CTCTCTC---TGTTTCTC-CCCC-G---TCTCCC---------GCA-----TATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TT
droWil2 scf2_1100000004954:3381302-3381409 + CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCT---TTTCTCTT-CCTCAT---CCGTTT---------GAATAATCCGTA--TAGTGGTGGCGTTAAGTTCTCCGATTTGACCGAAAAAGAGGGTAAGTTCTTAAATTATAGACTATAG------AT
droVir3 scaffold_12875:19949039-19949178 + GCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTAATTTAC-ATTT----------CTAT-A--CCTCTTCTATCTCTC-CCTCTCAAAAAAATAAAATAAAAAAAA-----ATTG--TAGCGGCGGCGTCAAGTTCTCCGATCTGACCGAGGATGAGGGTAAGTTCTGAACTGCTTAA--ATAG------AT
droMoj3 scaffold_6496:6247429-6247531 - TTG-------------------GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------------TCAT-CCTT----------CTTT-TTATCTCTTTTATCTCTC-CCC--T---TTGCTA---------AAA-----ACTC--TAGCGGAGGCGTCAAGTTCTCAGATCTAACCGAAGATGAGGGTAAGT----------------------------
droGri2 scaffold_15245:11589123-11589211 - TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAT-A--TCTTTTTTATCTCTC-CCC------TTTTCA---------ATA-----TATT--TAGCGGTGGAGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------TTT---------
droAna3 scaffold_13266:4205344-4205545 + CGATTGCTATTCTGTGAAC-ATATTTAATTCGATTCGAGTCTCCAA----------TCT--------------------------------CC-G----AGATA---------------------------C---------------TT------TATCTAGTGAATGCCCCCCGAAA-----C--TGTATACCC---------------AGAATGCTAAT--------------TTAT-CTTT----------TTGT-TTTTCTC---TGTTTCTT-CCCT-----ATACCC---------GAA-----TATCTATAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------AC
droBip1 scf7180000395751:21399-21611 + CGATTGCTATTCT--GAACAATATTTGATTCGATTCGAGTTTCCAA----------TCTCGATG---CTCTT--------------GAACTCC-G----AAATA---------------------------C---------------TC------TATCTAGTGACTGCCC-------CTGGACTC------------T---AT-C--CACAGATGCTAAT--------------TGCC-TCTT----------TTAT-TCTTCTC---TGTTTCTT-CCCC--AT-ACACCC---------GAA-----TATC--TAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGTG------AT
droKik1 scf7180000302639:33900-34078 - CGA-----------------------------------G-----------------TCTCGTTG---CC-------------------------G----AATAA---------------------------C---------------TCTCCTTTTGCCTTGTGAATACCA-------ATAGATATG------C----C---AC-G--AACAGATGCTAAT--------------CCCC-ACTC-------TCCGTCT-TTCTCTC---TATTTCTC-CCCC--AC-ACATCC---------GAA-----C-TC--TAGTGGCGGCGTGAAGTTCTCCGACCTGACCGAAAAAGAGGGTAAGT----------------AGAGAAAGAGGT
droFic1 scf7180000453583:60375-60577 - CTA-----AT-------AC-ATAATTAATTCGATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AACTA---------------------------C---------------TC------TCCCTAGTAAATACCA-------ATCGAACT-------A----T---TT-G--GACCGATGCTAAT--------------TCCC-ACTT----------GTGTGTTCTCTC---TTTTTCTC-CCCCCG---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------AT
droEle1 scf7180000489694:178005-178203 - CAC-------------------TCTTAATTCCTTTCGAGT-TCCAA----------TCTCGGTG---CTCTT--------------GAACTTT-G----AAATAC--------------------------C---------------TC------AATCTAGTGAATACCA-------ATAGACTT-------T----T---ATCG--GAGAGATGCTAAT--------------CCCCCGTTT----------GTGT-TTCTCTC---TGTTTCTC-CCCCCG---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAAGGTAAGT----------------AGAG------GC
droRho1 scf7180000779872:72080-72271 - A--------------------TTCTTAATTCGACTCGAGT-TCTAT----------TCTCGATG---CTCTT--------------GAATTCT-C----AAATA---------------------------C---------------CC------TATCTAGTGAATACCA-------ATAGACTT-------C----T---AT-G--AAATGATGCTAAT--------------CTGC-GCTT------------CT-TTCTCTT---TGTTTCTC-CCCC-A---ACTTTC---------GAA-----AATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAAAAAGAGGGTAAGT----------------AGAG------GC
droBia1 scf7180000302292:2367504-2367694 - CA-----------------------TAATTCTACTCGAGT-TCCAA----------TCTCGATG---CTCTT--------------GAACTCT-G----AAAT----------------------------C---------------TC------TATCTAGTGAATACAA-------GTAGTCCT-------T----T---TT-GTGAAAAGATTCTAAT--------------CCCA-GCTT----------CTGT-TTTTCTC---T-TTTCTC-CCCC-G---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GC
droTak1 scf7180000416016:390075-390289 + GCG-----AT-------AA-ATACTTAACTCGATTCGAGA-TCCAT----------TCTCGATG---CTCTTGAATCTTGAATCTTGAACTCT-G----AAATA---------------------------C---------------TC------TATCTAGTGAATACAA-------GTAGGCTT-------T----T---AT-G--GATAGATGCTAAT--------------CCCC-GCTT----------GTGT-TTCTCTC---TGTTTCTC-CCCC-G---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GC
droEug1 scf7180000409672:3345423-3345631 - CAT-------------------ACTTAATTCGATTCAAGT-TCCAT----------GCTTGATGATGCTCTT--------------GAACTCTTA----AAATA---------------------------C---------------TC------TATCTAGTGAATACAA-----AAATATACTT-------T----TTTTTC-G--GATAGATGCTAAT--------------CCCT-GTTTATTT------TTCT-T--TCTC---TCTTTCTTCCCCC-G-ATTAATCC---------GAA-----TATG--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GC
dm3 chr2R:14325063-14325265 - CGA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AAATA---------------------------C---------------TT------GATCTAGTGAATACAA-------ATAGAATT-------T----C---AT-GTG-AATGATGCTAAT--------------TCCC-GCTT----------GTCT-TTCTCTC---TGTTTCTC-CCCC--AAACCATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAGATAGCAG-
droSim2 2r:14994934-14995129 - CGA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AAATA---------------------------C---------------TT------GATCTAGTGAATACAA-------ATAGACTT-------T----C---AT-GTG-AATGATGCTAAT--------------TCCC-GCTT----------GTCT-TTCTCTC---TGTTTCTC-CCCC--AAACCATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------
droSec2 scaffold_1:11801812-11802007 - CGA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------TAACTTT-G----AAATA---------------------------C---------------TT------GATCTAGTGAATACAC-------ATAGACTT-------T----C---AT-GTG-AATGATGCTAAT--------------TCCC-GCTT----------GTCT-TTCTCTC---TGTTTCTC-CCCC--AAACCATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------
droYak3 2R:14861279-14861501 + TG----CGAT-------AC-AAACTTAATTTCATTCGAGT-TCCAT----------TCTCGATC---CTCTT--------------GAACTTT-A----AACAAC------------------------TACTTGGATCGACTTGATTT------GATCTACTGCATACAA-------ATAGACTT-------T----C---AT-GTG-AATGATGCTAAT--------------CCCC-ACCT----------TTAT-TTCTCTC---TGTTTCTC-CCCC--AAAACATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATTG------GT
droEre2 scaffold_4845:8532862-8533057 - CAA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AGATA---------------------------C---------------TT------GCTCTACTGAATACAA-------ATAGATTT-------T----C---AC-GTG-AATGGTGCTAAT--------------CCCC-GCCT----------TTAT-TTCTCTC---TGTTTCTC-CCCC-A---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG------GC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CAAATGCAAT-------GC-ATATTTGATACCGGTCGAGA-TCGTAACCCTCCATA-----------CTC----------------------C-GACAGAAATATCCTATCTCTATCATACTTATTCGAAACT--------------CG------TATCTAGTAGACGCCA-----CG-----C--TGCACGTCCACCA---AT-G--TAAATATGCTAACGCCTT------------T-GTTTCTTTTTCTCTCTCT-CTCTCTC---TGTTTCTC-CCCCCG---TCTCCC---------GCA-----TATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................TATTTGATACCGGTCGAGA-TC............................................................................................................................................................................................................................................................................................................................................................2112.0020110000000
.............................................................................................................................................................................................................................................................................................................................AGTGGTGGCGTCAAGTTCTCTGATC.................................................2512.0020000002000
....................ATATTTGATACCGGTCG..................................................................................................................................................................................................................................................................................................................................................................1712.0020000000002
..............................................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGA....................................2112.0020200000000
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGGTAAGT----------------............2511.0010010000000
..............................................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGAGGC.................................2411.0010010000000
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGC.................................2011.0010000100000
................................................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCT................................................2311.0010010000000
................................................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCTG...............................................2411.0010100000000
.................................................................................................................................................................................................................................................................................................................................................TGATCTGACCGAGAAAGA....................................1811.0010100000000
....................ATATTTGATACCGGTCGAGA-T.............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAA......................................1911.0010100000000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTGACCGAGAAAGAG...................................2511.0010100000000
...........................................GTAACCCTCCATA-----------CTC----------------------C-GACA.....................................................................................................................................................................................................................................................................................................2111.0010010000000
...................................................................................................................................................................................................................................................................................................................................................ATCTGACCGAGAAAGAGGCG................................2030.3310000000001
droPer2
CAAATGCAAT-------GC-ATATTTGATACCGGTCGAGA-TCGTAACCCTCCATA-----------CTC----------------------C-GACAGAAATATCCTATCTCTATCATACTTATTCGAAACT--------------CG------TATCTAGTAGACGCCA-----CG-----C--TGCACGTCCACCA---AT-G--TAAATATGCTAATGCCTT------------T-GTTTCTTTTT----CTCT-CTCTCTC---TGTTTCTC-CCCC-G---TCTCCC---------GCA-----TATC--TAGTGGTGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------TTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAA.......................................2612.002200000
................................................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCTGACC............................................2712.002200000
................................................................................................................................................................................................................................................................................................................................................CTGATCTGACCGAGAAAGAGGC.................................2212.002200000
...............................................................................................................................................................................................................................................................................................................................................TCTGATCTGACCGAGAAA......................................1811.001100000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCTGATCTGACCGAGA........................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................GTGGCGTCAAGTTCTCTGATCT................................................2211.001100000
...................................................................................................................................................................................................................................................................................................................................GGCGTCAAGTTCTCTGATCT................................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................CTCTGATCTGACCGAGAAAGAGGC.................................2411.001000001
............................................................................................................................................................................................................................................................................................................................................TTCTCTGATCTGACCGAGAAAG.....................................2211.001000001
................................................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCC................................................2311.001100000
....................ATATTTGATACCGGTCGAGA-TC............................................................................................................................................................................................................................................................................................................................................................2211.001100000
......................................................................................................................................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAAA......................................2711.001100000
................................................................................................................................................................................................................................................................................................................................GGTGGCGTCAAGTTCTCTGATCT................................................2311.001000001
........................................................................................................................................................................................................................................................................................................................................CAAGTTCTCTGATCTGACC............................................1911.001100000
........................................................................................................................................................................................................................................................................................................................................CAAGTTCTCTGATCTGACCGAGA........................................2311.001100000
.....................................................................................................................................................................................................................................................................................................................................CGTCAAGTTCTCTGATCTGACC............................................2211.001010000
droWil2
CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCT---TTTCTCTT-CCTCAT---CCGTTT---------GAATAATCCGTA--TAGTGGTGGCGTTAAGTTCTCCGATTTGACCGAAAAAGAGGGTAAGTTCTTAAATTATAGACTATAG------ATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................GGTGGCGTTAAGTTCTCCGA...................................................2011.00100100
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATTTGACCGAAAAAGAGG..................................2611.00100010
.............................................................................................................................................................................................................................................................................................................................AGTGGTGGCGTTAAGTTCTCC.....................................................2111.00100010
droVir3
GCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTTTTAATTTAC-ATTT----------CTAT-A--CCTCTTCTATCTCTC-CCTCTCAAAAAAATAAAATAAAAAAAA-----ATTG--TAGCGGCGGCGTCAAGTTCTCCGATCTGACCGAGGATGAGGGTAAGTTCTGAACTGCTTAA--ATAG------ATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGGATGAGG..................................1912.002000000000000000000000000000000000000100000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................ATCTGACCGAGGATGAGG..................................1812.002010000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGGATGAGGC.................................2611.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTCTGAACTGCTTAA--ATAG------AT2111.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................AAATAAAAAAAA-----ATTG--TAGC.......................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGGATGAGG..................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAG.........................................1911.001100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TGACCGAGGATGAGGGTAAGTTCTG........................2511.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TCTATCTCTC-CCTCTCAAAA.......................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGGATGAG...................................2211.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGGATG.....................................2111.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGGATGAGGC.................................2011.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TCAAGTTCTCCGATCTGACCGAGGATG.....................................2711.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGGAT......................................2011.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
TTG-------------------GTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC------------------TCAT-CCTT----------CTTT-TTATCTCTTTTATCTCTC-CCC--T---TTGCTA---------AAA-----ACTC--TAGCGGAGGCGTCAAGTTCTCAGATCTAACCGAAGATGAGGGTAAGT----------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................CTCAGATCTAACCGAAGATGA....................................2112.002100001
...................................................................................................................................................................................................................................................................................................................................GGCGTCAAGTTCTCAGATCTAACC............................................2411.001100000
.................................................................................................................................................................................................................................................................................TCTC-CCC--T---TTGCTA---------AAA-----ACTC--TAG........................................................................2411.001100000
.....................................................................................................................................................................................................................................................................................................................................CGTCAAGTTCTCAGATCTAACCG...........................................2311.001000100
.............................................................................................................................................................................................................................................................................................................................................TCTCAGATCTAACCGAAGAT......................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................AGGCGTCAAGTTCTCAGATCTAACCGA..........................................2711.001100000
..................................................................................................................................................................................................................................................................................CTC-CCC--T---TTGCTA---------AAA-----ACTC--TAG........................................................................2311.001100000
droGri2
TTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAT-A--TCTTTTTTATCTCTC-CCC------TTTTCA---------ATA-----TATT--TAGCGGTGGAGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------TTT---------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..............................................................................................................................................................................................................................................................................................................................GCGGTGGAGTCAAGTTCTCTGATCTG...............................................2611.00110
droAna3
CGATTGCTATTCTGTGAAC-ATATTTAATTCGATTCGAGTCTCCAA----------TCT--------------------------------CC-G----AGATA---------------------------C---------------TT------TATCTAGTGAATGCCCCCCGAAA-----C--TGTATACCC---------------AGAATGCTAAT--------------TTAT-CTTT----------TTGT-TTTTCTC---TGTTTCTT-CCCT-----ATACCC---------GAA-----TATCTATAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------ACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................CTGATCTGACCGAGAAAGAGGC.................................2211.001100000
.............................................................................................................................................................................................................................................................................................................................AGTGGCGGCGTCAAGTTCTCTGAT..................................................2411.001000001
...................................................................................................................................................................................................................................................................................................................................GGCGTCAAGTTCTCTGATCTGACC............................................2411.001100000
..............................................................................................................................................................................................................................................................................................................................GTGGCGGCGTCAAGTTCTCTGATC.................................................2411.001100000
..............................................................................................................................................................................................................................................................................................................................GTGGCGGCGTCAAGTTCTCT.....................................................2011.001100000
................................................................................................................................................................................................................................................................................................................................GGCGGCGTCAAGTTCTCTGATCTGACC............................................2711.001010000
......................................................................................................................................................................................................................................................................................................................................GTCAAGTTCTCTGATCTGACCGAGAA.......................................2611.001001000
................................................................................................................................................................AGTGAATGCCCCCCGAAA-----C--T............................................................................................................................................................................................................2011.001100000
droBip1
CGATTGCTATTCT--GAACAATATTTGATTCGATTCGAGTTTCCAA----------TCTCGATG---CTCTT--------------GAACTCC-G----AAATA---------------------------C---------------TC------TATCTAGTGACTGCCC-------CTGGACTC------------T---AT-C--CACAGATGCTAAT--------------TGCC-TCTT----------TTAT-TCTTCTC---TGTTTCTT-CCCC--AT-ACACCC---------GAA-----TATC--TAGTGGCGGCGTCAAGTTCTCTGATCTGACCGAGAAAGAGGGTAAGT----------------AGTG------ATSizeHit CountTotal NormTotal
No Reads
droKik1
CGA-----------------------------------G-----------------TCTCGTTG---CC-------------------------G----AATAA---------------------------C---------------TCTCCTTTTGCCTTGTGAATACCA-------ATAGATATG------C----C---AC-G--AACAGATGCTAAT--------------CCCC-ACTC-------TCCGTCT-TTCTCTC---TATTTCTC-CCCC--AC-ACATCC---------GAA-----C-TC--TAGTGGCGGCGTGAAGTTCTCCGACCTGACCGAAAAAGAGGGTAAGT----------------AGAGAAAGAGGTSizeHit CountTotal NormTotal
No Reads
droFic1
CTA-----AT-------AC-ATAATTAATTCGATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AACTA---------------------------C---------------TC------TCCCTAGTAAATACCA-------ATCGAACT-------A----T---TT-G--GACCGATGCTAAT--------------TCCC-ACTT----------GTGTGTTCTCTC---TTTTTCTC-CCCCCG---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------ATSizeHit CountTotal NormTotal
No Reads
droEle1
CAC-------------------TCTTAATTCCTTTCGAGT-TCCAA----------TCTCGGTG---CTCTT--------------GAACTTT-G----AAATAC--------------------------C---------------TC------AATCTAGTGAATACCA-------ATAGACTT-------T----T---ATCG--GAGAGATGCTAAT--------------CCCCCGTTT----------GTGT-TTCTCTC---TGTTTCTC-CCCCCG---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAAGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droRho1
A--------------------TTCTTAATTCGACTCGAGT-TCTAT----------TCTCGATG---CTCTT--------------GAATTCT-C----AAATA---------------------------C---------------CC------TATCTAGTGAATACCA-------ATAGACTT-------C----T---AT-G--AAATGATGCTAAT--------------CTGC-GCTT------------CT-TTCTCTT---TGTTTCTC-CCCC-A---ACTTTC---------GAA-----AATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAAAAAGAGGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droBia1
CA-----------------------TAATTCTACTCGAGT-TCCAA----------TCTCGATG---CTCTT--------------GAACTCT-G----AAAT----------------------------C---------------TC------TATCTAGTGAATACAA-------GTAGTCCT-------T----T---TT-GTGAAAAGATTCTAAT--------------CCCA-GCTT----------CTGT-TTTTCTC---T-TTTCTC-CCCC-G---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droTak1
GCG-----AT-------AA-ATACTTAACTCGATTCGAGA-TCCAT----------TCTCGATG---CTCTTGAATCTTGAATCTTGAACTCT-G----AAATA---------------------------C---------------TC------TATCTAGTGAATACAA-------GTAGGCTT-------T----T---AT-G--GATAGATGCTAAT--------------CCCC-GCTT----------GTGT-TTCTCTC---TGTTTCTC-CCCC-G---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
droEug1
CAT-------------------ACTTAATTCGATTCAAGT-TCCAT----------GCTTGATGATGCTCTT--------------GAACTCTTA----AAATA---------------------------C---------------TC------TATCTAGTGAATACAA-----AAATATACTT-------T----TTTTTC-G--GATAGATGCTAAT--------------CCCT-GTTTATTT------TTCT-T--TCTC---TCTTTCTTCCCCC-G-ATTAATCC---------GAA-----TATG--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------AGAG------GCSizeHit CountTotal NormTotal
No Reads
dm3
CGA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AAATA---------------------------C---------------TT------GATCTAGTGAATACAA-------ATAGAATT-------T----C---AT-GTG-AATGATGCTAAT--------------TCCC-GCTT----------GTCT-TTCTCTC---TGTTTCTC-CCCC--AAACCATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAGATAGCAG-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGG..................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001010000000000000000
...................................................................................................................................................................................................................................................................................................................................................ATCTGACCGAGAAAGAGG..................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000001000001000000000
..................................................................................................................................................................................................................................................................................................................................CGGTGTGAAGTTCTCCGATCTGACCG...........................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................CGATCTGACCGAGAAAGAGG..................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................CTC-CCCC--AAACCATCC---------GAA-----TATC--TA.........................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGAGGC.................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TGTGAAGTTCTCCGATCTGACCGAGAAA......................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................AGTTCTCCGATCTGACCGAGAAAGA....................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAGGCC................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TGGCGGTGTGAAGTTCTCCGAT..................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ATA---------------------------C---------------TT------GATCTAGTGAATACA.............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CGGTGTGAAGTTCTCCGATCTGA..............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAG.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACCGAGA........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AA-----TATC--TAGTGGCGGTGT...............................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................CCGATCTGACCGAGAAAGAGG..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAA......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AACCATCC---------GAA-----TATC--TAGA.......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GCTT----------GTCT-TTCTCTC---TGTTTCTC-.................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCC.....................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TGGCGGTGTGAAGTTCTCCGATCTG...............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGGT................................2111.0010000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TCTCGATG---CTCTT--------------GAACTTT-G----T...................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGAGGC.................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TCTGACCGAGAAAGAGGGTGCA.............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................GCTT----------GTCT-TTCTCTC---TGTTTCTC-CCC..............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CTAGTGAATACAA-------ATAGAATT-------......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AAACCATCC---------GAA-----TATC--TAG........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................ATGCTAAT--------------TCCC-GCTT----------GTCT-T...................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TCT-TTCTCTC---TGTTTCTC-CCC..............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAG...................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGA..................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TGTGAAGTTCTCCGATCTGACCGAGAA.......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................GATG---CTCTT--------------GAACTTT-G----AAATA---------------------------C---------------TT------GATC........................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................T----C---AT-GTG-AATGATGCTAA...........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AT----------TCTCGATG---CTCTT--------------GCC..............................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AAATA---------------------------C---------------TT------GATCTAGTGAATACAA-------ATAGACTT-------T----C---AT-GTG-AATGATGCTAAT--------------TCCC-GCTT----------GTCT-TTCTCTC---TGTTTCTC-CCCC--AAACCATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................T--------------TCCC-GCTT----------GTCT-TTCTCTC---TGTTTC....................................................................................................................2611.00110000000000000000
...............................................................G---CTCTT--------------GAACTTT-G----AAATA---------------------------C---------------TT------............................................................................................................................................................................................................................................2211.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGA..........................................1811.00101000000000000000
..............................................................................................................................................................................................................................................................GTCT-TTCTCTC---TGTTTCTC-CCCC--...........................................................................................................2311.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................TGGCGGTGTGAAGTTCTCCGATCTG...............................................2511.00100000000001000000
........................................................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACCGAGAAAGA....................................2711.00100000000000100000
......................................GT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-.........................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................TGTGAAGTTCTCCGATCTGACCGAGA........................................2611.00100000000010000000
......................................................................................................................................................................TACAA-------ATAGACTT-------T----C---AT-GTG-AATG..................................................................................................................................................................................2411.00100000000010000000
................................................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGATCTGACC............................................2711.00101000000000000000
droSec2
CGA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------TAACTTT-G----AAATA---------------------------C---------------TT------GATCTAGTGAATACAC-------ATAGACTT-------T----C---AT-GTG-AATGATGCTAAT--------------TCCC-GCTT----------GTCT-TTCTCTC---TGTTTCTC-CCCC--AAACCATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGAAA......................................2711.0010010
......................................................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGA........................................2511.0010010
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAA.......................................1911.0011000
................................................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGATCTGAC.............................................2611.0011000
............................................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAA.......................................2011.0010100
........................................................................................................................................................................................................................................................................................................................TC--TAGTGGCGGTGTGAAGTTC........................................................2111.0010100
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGAG...................................2511.0011000
......................................GT-TCCAT----------TCTCGATG---CTCTT--------------T................................................................................................................................................................................................................................................................................................................2111.0010010
droYak3
TG----CGAT-------AC-AAACTTAATTTCATTCGAGT-TCCAT----------TCTCGATC---CTCTT--------------GAACTTT-A----AACAAC------------------------TACTTGGATCGACTTGATTT------GATCTACTGCATACAA-------ATAGACTT-------T----C---AT-GTG-AATGATGCTAAT--------------CCCC-ACCT----------TTAT-TTCTCTC---TGTTTCTC-CCCC--AAAACATCC---------GAA-----TATC--TAGTGGCGGTGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATTG------GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................CGATCTGACCGAGAAAGAGG..................................2012.00202000000000
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGC.................................2012.00200000020000
........................................................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACCGAGA........................................2311.00100000010000
....................................................................................................................................................................................................................................................................................................................................GTGTGAAGTTCTCCGATCTGA..............................................2111.00100100000000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGAGGGT................................2811.00100000010000
........................................................................................................C------------------------TACTTGGATCGACTTGATTT------GAT.........................................................................................................................................................................................................................................2411.00100010000000
..............................................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGAAAG.....................................2011.00101000000000
..............................................................................................................................................................................................................................................................TTAT-TTCTCTC---TGTTTCTC-CC...............................................................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................................CTC---TGTTTCTC-CCCC--AAAACA.....................................................................................................2111.00101000000000
......................................................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGAA.......................................2611.00100100000000
..........................AATTTCATTCGAGT-TCCAT----------TCT............................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................TCCGATCTGACCGAGAAAGAGGC.................................2311.00100000010000
..............................................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGAAAGAGGC.................................2411.00100000010000
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGAGGC.................................2511.00100000010000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAA......................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................CTCCGATCTGACCGAGAAAGAG...................................2211.00100000010000
..................................................................................................................................................................................ATAGACTT-------T----C---AT-GTG-AATGATGCT.............................................................................................................................................................................2411.00100000100000
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGAG...................................2311.00100000010000
....................................................................................................................................................................................................................................................................................................................................GTGTGAAGTTCTCCGATCTGACCGA..........................................2511.00100000010000
..................................................................................................................................................................................................................................................................................................................................................GATCTGACCGAGAAAGAGGCC................................2111.00100000010000
....................................................................TCTT--------------GAACTTT-A----AACAAC------------------------TACTTGGATC............................................................................................................................................................................................................................................................2811.00110000000000
................................................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGATCTGAC.............................................2611.00110000000000
................................................................................................................................................................................................................................................................................................................................GGCGGTGTGAAGTTCTCCGAT..................................................2111.00101000000000
........................................................................................................................................................................................................................................................................................................................................GAAGTTCTCCGATCTGACC............................................1911.00100100000000
..................................................................................................................................................................................................................................................................................................................................CGGTGTGAAGTTCTCCGATCTGACC............................................2511.00100100000000
............................................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAGGCC................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................TCTCCGATCTGACCGAGAAAGA....................................2211.00100000010000
...........................ATTTCATTCGAGT-TCCAT----------TCTCG..........................................................................................................................................................................................................................................................................................................................................2311.00101000000000
droEre2
CAA-------------------ACTTAATTCCATTCGAGT-TCCAT----------TCTCGATG---CTCTT--------------GAACTTT-G----AGATA---------------------------C---------------TT------GCTCTACTGAATACAA-------ATAGATTT-------T----C---AC-GTG-AATGGTGCTAAT--------------CCCC-GCCT----------TTAT-TTCTCTC---TGTTTCTC-CCCC-A---ACATCC---------GAA-----TATC--TAGTGGCGGCGTGAAGTTCTCCGATCTGACCGAGAAAGAGGGTAAGT----------------ATAG------GCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................TTCTCCGATCTGACCGAGAAAGAGGCC................................2711.0011000000
...........................................................................................................................................................................................................................................................................................................................................GTTCTCCGATCTGACCGAGAAAGA....................................2411.0010000100
..............................................................................................................................................................................................................................................................................................................................GTGGCGGCGTGAAGTTCTC......................................................1911.0010000010
..........................................................................................................................................................................................................................................................................................................................................AGTTCTCCGATCTGACCGAG.........................................2011.0010000100
.............................................................................................................................................................................................................................................................................................................................AGTGGCGGCGTGAAGTTCTCC.....................................................2111.0011000000
..........................................................................................................................................................................................................................................................................................................................................AGTTCTCCGATCTGACCGAGA........................................2111.0010001000
......................................................................................................................................................................................................................................................................................................................................GTGAAGTTCTCCGATCTGACCGAGAAA......................................2711.0010001000

Generated: 05/18/2015 at 12:06 AM