ID:

dps_1164

 Coordinate:

3:11576292-11576546 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-59.3 -59.1 -59.1

Flybase annnotation

exon [dpse_GLEANR_14153:8]; CDS [Dpse\GA15662-cds]; CDS [Dpse\GA15662-cds]; exon [dpse_GLEANR_14153:7]; intron [Dpse\GA15662-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCACTTGGTGTCGGCGGCCAACGGGGCCGAGGACTTCTACTCTACGGAGGTGAGTAACCAGCGGTCGGCGGAACTGTTCTTCACTTGACCAATTCTTTTGTTTGCCAAAACAAATGCCAAAAAACACGGTAGAAAAGAAAGCGCCATTACCAGGTACCCAACAGATTAATGGCTATATAGTACATTTGATACCTAGCTAACTATCGCTAATATGTAGCTTTCTAGTTGGGGCTAGGGGCCTGAGTAGACTCAGTGTCAATCAGTTCGGGCATGAGCTAATTCGTGATCTATATATTTATTGCAGGACCACGCCTGCCGTTCGGAGGGCGTTGATCTGGCGCGAGAACTGGATTA
**************************************************((((((((((...(((.(((((((.((.((.......)).)).))).(((((((....)))))))((((.........))))..........))))...))).))).((((((.(((((((((((....))).)))).....((((((((((((..((((.....))))....)))))..)))))))((((((((....))))).))))))).))).)))((((((....)))))).......))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 M062
head
................................................................................................TGTTGTTTGCCAAAACAAAC............................................................................................................................................................................................................................................... 20 2 3 2.33 7 7 0 0 0
................................................................................................TGTTGTTTGCCAAAACAAACA.............................................................................................................................................................................................................................................. 21 3 20 2.25 45 45 0 0 0
................................................................................................TGTTGTTTGCCAAAACAAA................................................................................................................................................................................................................................................ 19 1 1 2.00 2 2 0 0 0
.................................................................................................GTTGTTTGCCAAAACAAACA.............................................................................................................................................................................................................................................. 20 3 20 1.60 32 32 0 0 0
...............................................................................................................................................................................................................................................................................................................................................CTGGCGCGAGAACTGGATTA 20 0 1 1.00 1 1 0 0 0
......TGGTGTCGGCGGCCAACGGGGCC...................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
......TGGTGTCGGCGGCCAACGGGGCCGA.................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................................................................................................................................CGTTCGGAGGGCGTTGATC................... 19 0 1 1.00 1 1 0 0 0
..................................................................................................TTGTTTGCCAAAACAAACACC............................................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0 0 0
TGCACTTGGTGTCGGCGGCCA.............................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
....CTTGGTGTCGGCGGCCAA............................................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GTTGATCTGGCGCGAGAACTG..... 21 0 1 1.00 1 1 0 0 0
......TGGTGTCGGCGGCCAACGGGGCCGAG................................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GCGTTGATCTGGCGCGAGAAC....... 21 0 1 1.00 1 1 0 0 0
..................CCAACGGTGCCGAGGACTT.............................................................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0
..............................AGGACTTCTACTCTACGGAG................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................GGAGGGCGTTGATCTGGCGCGAGA......... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................................................................................................................................CGTTGATCTGGCGCGAGAACT...... 21 0 1 1.00 1 0 0 1 0
.......GGTGTCGGCGGCCAACGGTGCCGAG................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................................................AGGGCGTTGATCTGGCGCGAGAACTG..... 26 0 1 1.00 1 0 1 0 0
....................AACGGTGCCGAGGACTTC............................................................................................................................................................................................................................................................................................................................. 18 1 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................................................................................................................................GGAGGGCGTTGATCTGGCGCG............ 21 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................................GACCACGCCTGCCGTTCGGAG............................. 21 0 1 1.00 1 1 0 0 0
.................................................................................................GTTGTTTGCCAAAACAAACACC............................................................................................................................................................................................................................................ 22 3 2 1.00 2 2 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GCGTTGATCTGGCGCGAGAACT...... 22 0 1 1.00 1 1 0 0 0
...................CAACGGTGCCGAGGACTTCT............................................................................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................................................................................AATTCGTGATCTATATATTTATTGCAG.................................................. 27 0 1 1.00 1 0 1 0 0
................GGCCAACGGTGCCGAGGACTTCTACT......................................................................................................................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................TGCCGTTCGGAGGGCGTTGATC................... 22 0 1 1.00 1 1 0 0 0
.................................................................................................GTTGTTTGCCAAAACAAAC............................................................................................................................................................................................................................................... 19 2 9 0.67 6 6 0 0 0
...............................................................................................TTGTTGTTTGCCAAAACAAA................................................................................................................................................................................................................................................ 20 2 14 0.50 7 7 0 0 0
.........................................................................................................................................................................................................................................................................................................................................GTCGATCTGGGGCGAGAAC....... 19 2 2 0.50 1 1 0 0 0
.............................................................................................................................................................................................................TGCTAATATGAAGCTTTCTATTT............................................................................................................................... 23 3 2 0.50 1 1 0 0 0
.......................GGTGCCGAGGACTTCTACTC........................................................................................................................................................................................................................................................................................................................ 20 1 2 0.50 1 0 0 0 1
....CTTTGTGTCGACGGCCAAAGG.......................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0
.................................................................................................GTTGTTTGCCAAAACAAACAC............................................................................................................................................................................................................................................. 21 3 13 0.31 4 4 0 0 0
...................................................................................................................................................................................................................................................................................................TATATTTATGGCTGGACCAC............................................ 20 2 4 0.25 1 1 0 0 0
............................................................................................................................................................................................................................................................................................................................................GATCTGGGGCGTGAACTG..... 18 2 5 0.20 1 1 0 0 0
..................................................................................................TTGTTTGCCAAAACAAACA.............................................................................................................................................................................................................................................. 19 2 20 0.20 4 4 0 0 0
..................................................................................................TTGTTTGCCAAAACAAAC............................................................................................................................................................................................................................................... 18 1 5 0.20 1 1 0 0 0
................................................................................................TGTTGTTTGCCAAAACAA................................................................................................................................................................................................................................................. 18 1 6 0.17 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................................................TTGATCTGGCGGGAAAACTC..... 20 3 8 0.13 1 1 0 0 0
...................................................................................................TGTTTGCCAAAACAAACAC............................................................................................................................................................................................................................................. 19 2 18 0.11 2 2 0 0 0
...................................................................................................................................................................................................................................................AGTAGAATGGGTGTCAATCA............................................................................................ 20 3 11 0.09 1 1 0 0 0
...........................................................................................................................................................................TGCTTTATAGTACATTTGATT................................................................................................................................................................... 21 3 15 0.07 1 1 0 0 0

Anti-sense strand reads

ACGTGAACCACAGCCGCCGGTTGCCCCGGCTCCTGAAGATGAGATGCCTCCACTCATTGGTCGCCAGCCGCCTTGACAAGAAGTGAACTGGTTAAGAAAACAAACGGTTTTGTTTACGGTTTTTTGTGCCATCTTTTCTTTCGCGGTAATGGTCCATGGGTTGTCTAATTACCGATATATCATGTAAACTATGGATCGATTGATAGCGATTATACATCGAAAGATCAACCCCGATCCCCGGACTCATCTGAGTCACAGTTAGTCAAGCCCGTACTCGATTAAGCACTAGATATATAAATAACGTCCTGGTGCGGACGGCAAGCCTCCCGCAACTAGACCGCGCTCTTGACCTAAT
**************************************************((((((((((...(((.(((((((.((.((.......)).)).))).(((((((....)))))))((((.........))))..........))))...))).))).((((((.(((((((((((....))).)))).....((((((((((((..((((.....))))....)))))..)))))))((((((((....))))).))))))).))).)))((((((....)))))).......))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body
................................................................................................ACAACAAACGGTTTTGTTT................................................................................................................................................................................................................................................ 19 1 1 68.00 68 68 0
................................................................................................ACAACAAACGGTTTTGTTTG............................................................................................................................................................................................................................................... 20 2 3 2.00 6 6 0
...............................................................................................AACAACAAACGGTTTTGTTT................................................................................................................................................................................................................................................ 20 2 14 1.21 17 17 0
................................................................................................ACAACAAACGGTTTTGTTTGT.............................................................................................................................................................................................................................................. 21 3 20 1.10 22 22 0
......................................................................................................................................................................................................................................................................................................................GCGGACGGCAAGCCTCCCGCAA....................... 22 0 1 1.00 1 1 0
..................GGTTGCCACGGCTCCTGAAGG............................................................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 1 0
...................................................................................................................................................AATGGTCCATGGGTTGTCTGG........................................................................................................................................................................................... 21 2 1 1.00 1 1 0
................................................................................................ACAACAAACGGTTTTGTT................................................................................................................................................................................................................................................. 18 1 6 1.00 6 6 0
..................................................................................................AACAAACGGTTTTGTTTGTG............................................................................................................................................................................................................................................. 20 2 6 0.50 3 3 0
.................................................................................................CAACAAACGGTTTTGTTTGT.............................................................................................................................................................................................................................................. 20 3 20 0.35 7 7 0
.......................................................................................................................................................................................................................................................................................................................................CGCAACTAGACCGCGCGG.......... 18 2 4 0.25 1 1 0
.........................................................................................................................................................................................................GAGAGCGGTTATAAATCGAAA..................................................................................................................................... 21 3 4 0.25 1 0 1
.................................................................................................CAACAAACGGTTTTGTTTGTG............................................................................................................................................................................................................................................. 21 3 13 0.23 3 3 0
..........................................................................................................................................................................................................AGAGCGGTTATAAATCGAA...................................................................................................................................... 19 3 20 0.20 4 4 0
...................................................................................................ACAAACGGTTTTGTTTGTG............................................................................................................................................................................................................................................. 19 2 18 0.17 3 3 0
................................................................................................ACAACAAACGGTTTTGTTTGTG............................................................................................................................................................................................................................................. 22 3 6 0.17 1 1 0
...............................................................................................CACAACAAACGGTTTTGTTT................................................................................................................................................................................................................................................ 20 2 6 0.17 1 1 0
..............................................................................................ACACAACAAACGGTTTTGTTTG............................................................................................................................................................................................................................................... 22 3 7 0.14 1 1 0
..............................................................................................AAACAACAAACGGTTTTGTTT................................................................................................................................................................................................................................................ 21 2 8 0.13 1 1 0
.................................................................................................CAACAAACGGTTTTGTTTG............................................................................................................................................................................................................................................... 19 2 9 0.11 1 1 0
.........................................................................................................................................................................................................GAGAGCGGTTATAAATCGAA...................................................................................................................................... 20 3 11 0.09 1 1 0
..........................................................................................................................................................................................................AGAGCGGTTATAAATCGAAA..................................................................................................................................... 20 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:11576242-11576596 - dps_1164 TGCACTTGGTGTCGGCGGCCAACGGGGCCGAGGACTTCTACTCTACGGAGGTGAGTAA--CCAG------------CGGTCG---GCG----------GA-ACTGTTCTTCACTTGACCA-ATTCTTTTGTTTGC-C--------------------AAAAC----------AAATGCCAA-AAAACACGGTAGAAAAGAAAGCGCCATTA---CCAGGTACCCAAC--AGATTAATGGCTA-TA----TAGTACAT-TTGATACCTAGCTAACTATCGCTAATATGTAGCTTTCTAGTTGGGGCTAGGGGCCTGA-GTAGAC--------------------------------TCAGTGTCAATCAGTTCGGGCATGAGCTAATTCGTGATC-----TATATATTTATTGCAGGACCACGCCTGCCGTTCGGAGGGCGTTGATCTGGCGCGAGAACTGGATTA
droPer2 scaffold_4:6975296-6975650 - dpe_1637 TGCACTTGGTGTCGGCGGCCAACGGAGCCGAGGACTTCTACTCTACGGAGGTGAGTAA--CCAG------------CGGTCG---GCG----------GA-ACTGTTCTTCACTTGACCA-ATTCTTTTGTTTGC-C--------------------AAAAC----------AAATGCCAA-AAAACACGGTAGAAAAGAAAGCGCCATTA---CCAGGTACCCAAC--AGATTAATGGCTA-TA----TAGTACGC-TTGATACCTAGCTAACTATCGCTAATATGTAGCTTTCTAGTTGGGGCTAGGGGCCTGA-GTAGTC--------------------------------TCAGTGTCAATCAGTTCGGGCATGAGCTAATTCGTGATC-----TATATATTTATTGCAGGACCACGCCTGCCGTTCGGAGGGCGTTGATCTGGCGCGAGAACTGGATTA
droWil2 scf2_1100000004954:3385528-3385880 + TGCATTTGGTATCGGCTGCTAACGGTGCCGAGGATTTTTACTCTACAGAGGTAAGCAA--TTAGTAA--------TTGGA-------GTGAATTTACATAGAAAAAC-ATTTCTCGATCG-TTTCTTTTGTT----A---C----------------AAATT----------AAACAA------------TTAGAAAAGAAAGCGTCATTACCATCAGGTACTGAAT-------TATGTACA-TATATATTAATTA----------------AC--CCGG---TAAATGGCTTAATAGTGCAGGCTAAAGGGCAGAAGTCGATATTTTTTTAAAGCAAAATACATACATAAGTATGCATTATTATACAGTT-------------------GACCTTCATTTCATATTTATTACAGGATCACGCTTGTCGCTCCGAGGGCGTGGATTTGGCTCGAGAATTGGACTA
droVir3 scaffold_12875:19954323-19954507 + TACACTTGGTATCGGCCGCAAATGGTGCCGAGGATTTCTACTCGACAGAGGTGAGTCT--TGCATTT--------GC--------GCT----------CT-ATTGAT-TCCAATTACCCT-CTTTTAA-CTTTGG-GCAACCTTT---CGTGTATATAAAAA----------AAA--AAAT---AAAAACAAAGAAAAGAAAGCGCATTTA---TCAGGTACTCGATCA-----AATG-CAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:6241250-6241464 - dmo_998 TACATCTGGTCTCAGCTGCCAATGGCGCTGAGGACTTCTACTCCACAGAGGTGAGAAA--CTCATTT--------GCACTCTAAGTTT----------GT-ACT--------------C----TTTCCCTTTCGC-C-AAACTTTGATCAATAAAAA----------ATGTG-TTTGTTTT---TAAATTAAAGAAAAGAAAGCGCATTTA---CCAGGTATAAAC---TGATTAAAGCCCA-TT----GAGTATATGTTGACAGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGAGAATTGCT---
droGri2 scaffold_15245:11583512-11583728 - TGCACTTGGTATCGGCGGCAAATGGCGCCGAGGATTTCTACTCCACAGAGGTGAGTGT--T---CCACA---TGTGC--------GCA----------CT-TTTAAT-ACGAT-TTACCT-ATTTCTTTGGGTAC-A---CCACTTACCATTTATAT----------ATGTG-CATGT-TT---AAAAC-AAAGAAAAGAAAGCGCCATTA---TCAGGTACCCAAATCAAAGCAATGGCAT-TA----TGTTAA--------AGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGAGAGCTT-ATTA
droAna3 scaffold_13266:4213127-4213291 + TGCACTTGGTGTCGGCGGCCAACGGAGCCGAGGAGTTCTACTCCACAGAGGTGAGTGG--TCTCTCC--------ATGGGCT---ATT----------GT-ACCTAT-TGTACTTTATCG-ATTCTTTTGTTTGG-G---C----------------CAATT----------GA----------------ATAGAACAGAAAGCGCCACTA---CCAGGTATCAAAG-------ACTGGTTT-TA----TAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395751:26699-26842 + TGCACTTGGTATCGGCGGCCAACGGAGCCGAGGATTTCTACTCCACAGAGGTGAGTGG--TCTGTCC--------ATGGTCG---AT-----------GC-TTGGAT-TGTACTTGACCA-ATTCTTTTGTTTGG-G---C----------------CAATT----------A-------------------AGAACAGAAAGCGCCACTA---CCAGGTACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302639:27657-27817 - TTCACTTGGTTTCGGCTGCCAACGGTGCCGAGGACTTTTACTCCACAGAGGTGAGTTT-----GTCTTC---CTGCTGGTCA---GCA----------GA-GCAGTT-TTCACTTGACCAAATTCTCTTGTCT---------------------------------------AATCGCCCGATAAAAATGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453583:54619-54783 - TTCACTTGGTCTCAGCAGCCAATGGTGCCGAGGACTTTTACTCCACAGAGGTGAGTTG---AGGCCG--------CAGGCTG---GCA----------GA-AATAAT-TTTACTTGACCA-GTTCTCTTGTCCGC-A---C----------------AAATT------AA--AAACGCCCG---AATATGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000489694:170520-170720 - TGCACTTGGTATCGGCGGCCAACGGCGCCGAGGACTTTTACTCCACAGAGGTGAGTAGAGCAGGCCATT---GCCATGGCCG---GCA----------GT-AATGAC-TTCACTTGACCA-ATTCTCTTGTCCGC-A---C----------------A--ACAAAAAATA--AAACGCCCG---AATACGGTAGAACAGAAAACGCCACTA---TCAGGTATCCAAG-------AATGGCTA-CA----CTACTTAT-CCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779872:66111-66285 - TGCACTTGGTCTCAGCGGCCAACGGTGCCGAGGACTTTTACTCCACAGAGGTGAGTAG--CAGGACA--------TTGGTCG---GCA----------GT-AAAGAT-TTCACTTGACCA-ATTCTCTTGTCCGC-A---C----------------AAATA----------AAACGCCCG---AATACGGTAGAACAGAAAACGCCACTA---TCAGGTATCCAAG-------AATGGCTA-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302292:2361671-2361834 - TCCACCTGGTCTCCGCGGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CGGGCCA--------TGGGTCA---GCA----------GT-ACCGAT-TTCACTTGACCA-ACTCTCTTGTCCGC-A---C----------------CAATA----------ATCGCCCCG---AATACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000416016:395701-395863 + TTCACTTGGTCTCTGCGGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CAGGCCC--------TTGGTCG---GCA----------GT-ACAGAA-TTCACTTGACCA-ATTCTCTTGTCCAC-A---C----------------AAATA----------AATCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409672:3339811-3339986 - TGCACTTGGTCTCTGCGGCCAACGGGGCTGAGGATTTTTACTCCACAGAGGTGAGTTG--CAGGCCA--------AAGGTCG---GCC----------GT-ACAGAT-TTCACTTGACCA-ATTTTCTTATCCGCCA---C----------------AAATA----------AAACGCATG---AATATGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:14319820-14319999 - TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGTGAGTTG--CATGCCACT---TGGTCGGTTG---GCA----------TT-ACAAAT-TTCACCTGATCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AATCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:14989795-14989974 - TGCACTTGGTTTCGGCTGCAAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CATGCCACT---TGGTCGGTCG---GCA----------TT-ACAAAT-TTCACCTGACCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------ATTCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:11796649-11796828 - TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CATGCCACT---TGGTCGGTCG---GCA----------CT-ACAAAT-TTCACCTGACCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AATCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:14866728-14866910 + TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGTGAGTTG--GAGGCCACTAAATGGTCGGTCG---GCA----------CT-ACAAAT-TTCACCTGATCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AAACGCCCG---AATACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:8527750-8527932 - TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CAGGCCACTGGTCGGTCGGTCG---TCA----------GT-ACAAAT-TTCACCTGACCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AATCGCCCG---AATACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGCACTTGGTGTCGGCGGCCAACGGGGCCGAGGACTTCTACTCTACGGAGGTGAGTAA--CCAG------------CGGTCG---GCG----------GA-ACTGTTCTTCACTTGACCA-ATTCTTTTGTTTGC-C--------------------AAAAC----------AAATGCCAA-AAAACACGGTAGAAAAGAAAGCGCCATTA---CCAGGTACCCAAC--AGATTAATGGCTA-TA----TAGTACAT-TTGATACCTAGCTAACTATCGCTAATATGTAGCTTTCTAGTTGGGGCTAGGGGCCTGA-GTAGAC--------------------------------TCAGTGTCAATCAGTTCGGGCATGAGCTAATTCGTGATC-----TATATATTTATTGCAGGACCACGCCTGCCGTTCGGAGGGCGTTGATCTGGCGCGAGAACTGGATTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCGCGAGAACTGGATTA2011.0010100000000
......TGGTGTCGGCGGCCAACGGGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......TGGTGTCGGCGGCCAACGGGGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGAGGGCGTTGATC...................1911.0010100000000
TGCACTTGGTGTCGGCGGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....CTTGGTGTCGGCGGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCTGGCGCGAGAACTG.....2111.0010100000000
......TGGTGTCGGCGGCCAACGGGGCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATCTGGCGCGAGAAC.......2111.0010100000000
..............................AGGACTTCTACTCTACGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCGTTGATCTGGCGCGAGA.........2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGATCTGGCGCGAGAACT......2111.0010000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGTTGATCTGGCGCGAGAACTG.....2611.0010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCGTTGATCTGGCGCG............2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GACCACGCCTGCCGTTCGGAG.............................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTTGATCTGGCGCGAGAACT......2211.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................AATTCGTGATC-----TATATATTTATTGCAG..................................................2711.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTTCGGAGGGCGTTGATC...................2211.0010100000000
...............................................................................................................................TTGTTTGC-C--------------------AAAAC----------AAACA................................................................................................................................................................................................................................................................................................19200.2040400000000
...............................................................................................................................TTGTTTGC-C--------------------AAAAC----------AAAC.................................................................................................................................................................................................................................................................................................1850.2010100000000
droPer2
TGCACTTGGTGTCGGCGGCCAACGGAGCCGAGGACTTCTACTCTACGGAGGTGAGTAA--CCAG------------CGGTCG---GCG----------GA-ACTGTTCTTCACTTGACCA-ATTCTTTTGTTTGC-C--------------------AAAAC----------AAATGCCAA-AAAACACGGTAGAAAAGAAAGCGCCATTA---CCAGGTACCCAAC--AGATTAATGGCTA-TA----TAGTACGC-TTGATACCTAGCTAACTATCGCTAATATGTAGCTTTCTAGTTGGGGCTAGGGGCCTGA-GTAGTC--------------------------------TCAGTGTCAATCAGTTCGGGCATGAGCTAATTCGTGATC-----TATATATTTATTGCAGGACCACGCCTGCCGTTCGGAGGGCGTTGATCTGGCGCGAGAACTGGATTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................CGAGGACTTCTACTCTACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................2116.006600000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACGCCTGCCGTTCGGAGGGC..........................2514.004400000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGGCGTTGATCTGGCG..............1912.002020000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATCTGGCGCGAGAACTGG....2212.002200000
...........................CCGAGGACTTCTACTCTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGTTGATCTGGCGCGAGAACT......2612.002000002
..............................................................................................................................................................................................................................................................................................................................................................................................................................GGACCACGCCTGCCGTTCGGAGGG...........................2411.001100000
..........GTCGGCGGCCAACGGAGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................CGAGGACTTCTACTCTACGGG................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................CAACGGAGCCGAGGACTT............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...................CAACGGAGCCGAGGACTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCGGAGGGCGTTGATCTGGC...............2311.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTTCGGAGGGCGTTGATC...................2111.001010000
...................CAACGGAGCCGAGGACTTCTACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
TGCACTTGGTGTCGGCGGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................GGACTTCTACTCTACGGA................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...................CAACGGAGCCGAGGACTTCTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..CACTTGGTGTCGGCGGCCAACGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droWil2
TGCATTTGGTATCGGCTGCTAACGGTGCCGAGGATTTTTACTCTACAGAGGTAAGCAA--TTAGTAA--------TTGGA-------GTGAATTTACATAGAAAAAC-ATTTCTCGATCG-TTTCTTTTGTT----A---C----------------AAATT----------AAACAA------------TTAGAAAAGAAAGCGTCATTACCATCAGGTACTGAAT-------TATGTACA-TATATATTAATTA----------------AC--CCGG---TAAATGGCTTAATAGTGCAGGCTAAAGGGCAGAAGTCGATATTTTTTTAAAGCAAAATACATACATAAGTATGCATTATTATACAGTT-------------------GACCTTCATTTCATATTTATTACAGGATCACGCTTGTCGCTCCGAGGGCGTGGATTTGGCTCGAGAATTGGACTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...ATTTGGTATCGGCTGCTAACGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2316.00601230
...ATTTGGTATCGGCTGCTAACGGTGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTTGTCGCTCCGAGGGC..........................2111.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATTTGGCTCGAGAAT.......1911.00100100
.....TTGGTATCGGCTGCTAACGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCTCCGAGGGCGTGGATTTGGCTCG............2911.00110000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTGTCGCTCCGAGGGC..........................1911.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCTCCGAGGGCGTGGATTTGGCT..............2811.00100100
......................................................................................................................................................................................................................................................................................................ATAGTGCAGGCTAAAGGG.........................................................................................................................................................1811.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCGCTCCGAGGGCGTGGA.....................2211.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCGTGGATTTGGCT..............1811.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGTCGCTCCGAGGGC..........................1811.00100010
TGCATTTGGTATCGGCTGCTAACGGTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCGCTCCGAGGGCGTGG......................2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGCTTGTCGCTCCGAGGG...........................2111.00101000
...................................................................................................................................................................................................................................................................................................TTAATAGTGCAGGCTAAAGGGCA.......................................................................................................................................................2311.00100100
...ATTTGGTATCGGCTGCTAACGGTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
.......................................................................................................................................................................................................AAAGCGTCATTACCATCAGGT.....................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTTGTCGCTCCGAGGGCGTGGA.....................2611.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGAGGGCGTGGATTTGGC...............2211.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCTCCGAGGGCGTGGATTTGGC...............2711.00100010
droVir3
TACACTTGGTATCGGCCGCAAATGGTGCCGAGGATTTCTACTCGACAGAGGTGAGTCT--TGCATTT--------GC--------GCT----------CT-ATTGAT-TCCAATTACCCT-CTTTTAA-CTTTGG-GCAACCTTT---CGTGTATATAAAAA----------AAA--AAAT---AAAAACAAAGAAAAGAAAGCGCATTTA---TCAGGTACTCGATCA-----AATG-CAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................AGGATTTCTACTCGACAGAGGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.002020000000000000000000000000000000000000000000000000000000000000
................CGCAAATGGTGCCGAGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
................................GATTTCTACTCGACAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.............................GAGGATTTCTACTCGACAGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
..................CAAATGGTGCCGAGGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATTTA---TCAGGTACTCGATCA-----AAT....................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................A---TCAGGTACTCGATCA-----AAT....................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
....................AATGGTGCCGAGGATTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................GAGGATTTCTACTCGACAGAGGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................TAA-CTTTGG-GCAACCTTT---CGT..........................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.ACACTTGGTATCGGCCGCAAAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.....TTGGTATCGGCCGCAAATGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
..................................................................................................CT-ATTGAT-TCCAATT..............................................................................................................................................................................................................................................................................................................................................................1520.501000000000000000000000000000000000000000000000000000000000000001
droMoj3
TACATCTGGTCTCAGCTGCCAATGGCGCTGAGGACTTCTACTCCACAGAGGTGAGAAA--CTCATTT--------GCACTCTAAGTTT----------GT-ACT--------------C----TTTCCCTTTCGC-C-AAACTTTGATCAATAAAAA----------ATGTG-TTTGTTTT---TAAATTAAAGAAAAGAAAGCGCATTTA---CCAGGTATAAAC---TGATTAAAGCCCA-TT----GAGTATATGTTGACAGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTTGAGAATTGCT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................GACTTCTACTCCACAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................1814.004002200
..................................................................................................................................TTCGC-C-AAACTTTGATCAATA........................................................................................................................................................................................................................................................................................................................2111.001100000
.............................GAGGACTTCTACTCCACAGAGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............................................................ATTT--------GCACTCTAAGTTT----------GT-ACT--------------...........................................................................................................................................................................................................................................................................................................................................................2211.001001000
droGri2
TGCACTTGGTATCGGCGGCAAATGGCGCCGAGGATTTCTACTCCACAGAGGTGAGTGT--T---CCACA---TGTGC--------GCA----------CT-TTTAAT-ACGAT-TTACCT-ATTTCTTTGGGTAC-A---CCACTTACCATTTATAT----------ATGTG-CATGT-TT---AAAAC-AAAGAAAAGAAAGCGCCATTA---TCAGGTACCCAAATCAAAGCAATGGCAT-TA----TGTTAA--------AGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTCGAGAGCTT-ATTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......GGTATCGGCGGCAAATGGCGCCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
droAna3
TGCACTTGGTGTCGGCGGCCAACGGAGCCGAGGAGTTCTACTCCACAGAGGTGAGTGG--TCTCTCC--------ATGGGCT---ATT----------GT-ACCTAT-TGTACTTTATCG-ATTCTTTTGTTTGG-G---C----------------CAATT----------GA----------------ATAGAACAGAAAGCGCCACTA---CCAGGTATCAAAG-------ACTGGTTT-TA----TAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................AGCCGAGGAGTTCTACTCCACAGA................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.................GCCAACGGAGCCGAGGAGTTCTACTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000001
....CTTGGTGTCGGCGGCCAACGGAGCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................GGCCAACGGAGCCGAGGAGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......GGTGTCGGCGGCCAACGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.GCACTTGGTGTCGGCGGCCAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
....................AACGGAGCCGAGGAGTTCTACTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
....CTTGGTGTCGGCGGCCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.GCACTTGGTGTCGGCGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
TGCACTTGGTATCGGCGGCCAACGGAGCCGAGGATTTCTACTCCACAGAGGTGAGTGG--TCTGTCC--------ATGGTCG---AT-----------GC-TTGGAT-TGTACTTGACCA-ATTCTTTTGTTTGG-G---C----------------CAATT----------A-------------------AGAACAGAAAGCGCCACTA---CCAGGTACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTCACTTGGTTTCGGCTGCCAACGGTGCCGAGGACTTTTACTCCACAGAGGTGAGTTT-----GTCTTC---CTGCTGGTCA---GCA----------GA-GCAGTT-TTCACTTGACCAAATTCTCTTGTCT---------------------------------------AATCGCCCGATAAAAATGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTCACTTGGTCTCAGCAGCCAATGGTGCCGAGGACTTTTACTCCACAGAGGTGAGTTG---AGGCCG--------CAGGCTG---GCA----------GA-AATAAT-TTTACTTGACCA-GTTCTCTTGTCCGC-A---C----------------AAATT------AA--AAACGCCCG---AATATGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGCACTTGGTATCGGCGGCCAACGGCGCCGAGGACTTTTACTCCACAGAGGTGAGTAGAGCAGGCCATT---GCCATGGCCG---GCA----------GT-AATGAC-TTCACTTGACCA-ATTCTCTTGTCCGC-A---C----------------A--ACAAAAAATA--AAACGCCCG---AATACGGTAGAACAGAAAACGCCACTA---TCAGGTATCCAAG-------AATGGCTA-CA----CTACTTAT-CCGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGCACTTGGTCTCAGCGGCCAACGGTGCCGAGGACTTTTACTCCACAGAGGTGAGTAG--CAGGACA--------TTGGTCG---GCA----------GT-AAAGAT-TTCACTTGACCA-ATTCTCTTGTCCGC-A---C----------------AAATA----------AAACGCCCG---AATACGGTAGAACAGAAAACGCCACTA---TCAGGTATCCAAG-------AATGGCTA-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCCACCTGGTCTCCGCGGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CGGGCCA--------TGGGTCA---GCA----------GT-ACCGAT-TTCACTTGACCA-ACTCTCTTGTCCGC-A---C----------------CAATA----------ATCGCCCCG---AATACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTCACTTGGTCTCTGCGGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CAGGCCC--------TTGGTCG---GCA----------GT-ACAGAA-TTCACTTGACCA-ATTCTCTTGTCCAC-A---C----------------AAATA----------AATCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TGCACTTGGTCTCTGCGGCCAACGGGGCTGAGGATTTTTACTCCACAGAGGTGAGTTG--CAGGCCA--------AAGGTCG---GCC----------GT-ACAGAT-TTCACTTGACCA-ATTTTCTTATCCGCCA---C----------------AAATA----------AAACGCATG---AATATGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGTGAGTTG--CATGCCACT---TGGTCGGTTG---GCA----------TT-ACAAAT-TTCACCTGATCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AATCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................CATGCCACT---TGGTCGGTTG---GC..........................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CACTTGGTTTCGGCTGCCAACGGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................TGTCCGC-A---C----------------CAATT----------AATA.................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................AT-TTCACCTGATCA-ATTCTCT.................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
............................CGAGGATTTCTACTCCACAGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GCTGCCAACGGCGCCGAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
....................AACGGCGCCGAGGATTTCTACTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.GCACTTGGTTTCGGCTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGGATTTCTACTCCACAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TGGTTTCGGCTGCCAACGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000
...ACTTGGTTTCGGCTGCCAACGGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........TTTCGGCTGCCAACGGCGCCGAGGATTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGCCGAGGATTTCTACTCCACA..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CGAGGATTTCTACTCCACAGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCACTTGGTTTCGGCTGCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....CTTGGTTTCGGCTGCCAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGCCGAGGATTTCTACTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................AGGATTTCTACTCCACAGAGGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..CACTTGGTTTCGGCTGCCAACGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCGCCGAGGATTTCTACTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................AGAAAGCGCCACTA---TCAGGAC....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................TGTCCGC-A---C----------------CAATT----------AATCGGA..............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................CCAACGGCGCCGAGGATTTCTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGCCAACGGCGCCGAGGATTTCTACTCCA....................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................GAGGTGAGTTG--CATGCCACT---T........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................T-TTCACCTGATCA-ATTCTCTTGTC.............................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCAACGGCGCCGAGGATTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGGCGCCGAGGATTTCTACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGCCAACGGCGCCGAGGATTTCTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
................TGCCAACGGCGCCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAACGGCGCCGAGGATTTCTACTCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..CACTTGGTTTCGGCTGCCAACGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACCTGATCA-ATTCTCTTGTCCG...........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................TGTCCGC-A---C----------------CAATT----------AATAAG...............................................................................................................................................................................................................................................................................................2090.6760000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AGAACAGAAAGCGCCAGC...............................................................................................................................................................................................................................................................18160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGCACTTGGTTTCGGCTGCAAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CATGCCACT---TGGTCGGTCG---GCA----------TT-ACAAAT-TTCACCTGACCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------ATTCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................CGAGGACTTCTACTCCACAGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...............................................................GCCACT---TGGTCGGTCG---GC..........................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
......TGGTTTCGGCTGCAAACGGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.......................GGCGCCGAGGACTTCTACTCCACAGA................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
....CTTGGTTTCGGCTGCAAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
......................................................................................................................................................................................................................TCAGGTATCCAAA-------AATGGCTG-C.............................................................................................................................................................................................................................2211.00110000000000000000
TGCACTTGGTTTCGGCTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
TGCACTTGGTTTCGGCTGCAAACGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
droSec2
TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CATGCCACT---TGGTCGGTCG---GCA----------CT-ACAAAT-TTCACCTGACCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AATCGCCCG---AAAACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................CGGCGCCGAGGACTTCTACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..............................................................................................................................................................................................GTAGAACAGAAAGCGCCAC................................................................................................................................................................................................................................................................1911.0010010
droYak3
TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGATTTCTACTCCACAGAGGTGAGTTG--GAGGCCACTAAATGGTCGGTCG---GCA----------CT-ACAAAT-TTCACCTGATCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AAACGCCCG---AATACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........GTTTCGGCTGCCAACGGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.....TTGGTTTCGGCTGCCAACGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.GCACTTGGTTTCGGCTGCCAACGGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
...................................................................................................................................................................................CG---AATACGGTAGAACAGAAAGCGC...................................................................................................................................................................................................................................................................2411.00100000010000
....CTTGGTTTCGGCTGCCAACGGCGCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
....CTTGGTTTCGGCTGCCAACGGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
............................CGAGGATTTCTACTCCACAGAGGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.....TTGGTTTCGGCTGCCAACGGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.............................GAGGATTTCTACTCCACAGAGGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
droEre2
TGCACTTGGTTTCGGCTGCCAACGGCGCCGAGGACTTCTACTCCACAGAGGTGAGTTG--CAGGCCACTGGTCGGTCGGTCG---TCA----------GT-ACAAAT-TTCACCTGACCA-ATTCTCTTGTCCGC-A---C----------------CAATT----------AATCGCCCG---AATACGGTAGAACAGAAAGCGCCACTA---TCAGGTATCCAAA-------AATGGCTG-CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................AACGGCGCCGAGGACTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
TGCACTTGGTTTCGGCTGCCAACGGCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.........TTTCGGCTGCCAACGGCGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
............................CGAGGACTTCTACTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.............GGCTGCCAACGGCGCCGAGGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.....................ACGGCGCCGAGGACTTCTACTCCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010

Generated: 05/18/2015 at 12:08 AM