ID:

dps_1161

 Coordinate:

3:11298640-11298790 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.4 -23.4 -23.3

Flybase annnotation

exon [dpse_GLEANR_15868:3]; CDS [Dpse\GA24898-cds]; intron [Dpse\GA24898-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. XL_group1e:638890-638908 +
  2. XL_group1e:3289473-3289491 +
  3. XL_group1e:6447918-6447936 +
  4. XL_group1e:6712630-6712648 +
  5. XL_group1e:6728820-6728838 +
  6. 4_group5:1689511-1689529 +
  7. 3:2255421-2255439 +
  8. dps_1161  3:11298645-11298663 +
  9. 2:6797437-6797455 +
  10. 2:12229081-12229099 +
  11. 2:21740279-21740297 +
  12. 2:21904760-21904778 +
  13. 2:24240057-24240075 +
  14. 2:27670109-27670127 +
  15. XR_group8:2676104-2676122 +
  16. 4_group1:4365381-4365399 +
  17. 4_group3:595318-595336 +
  18. 4_group3:11234824-11234842 +
  19. XR_group6:6490067-6490085 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAGCAGACAGCGAAACCTCAACCACAGCCGAAGCCTACGAATGTGCACCATCACAATCATCTGATACTGGACGGAGGAGAGTTCACCCACAGCGACATAACCCATCCGGGAGCCGATGCCGATCTCGTCGAGGATCTGCAGTTCTCCACCGGCTACGGACCTCAGCCTGTATACGCTGATCC
**************************************************((.((.((.......)).)).)).....((...........((((..((.......))..))))...............(((....(((((........)))))....)))........(((....))).))(((((.......)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 M059
embryo
 GSM444067
head
 SRR902012
CNS imaginal disc
 M062
head
.....................................................................................................................................................GTTCACCCACGGCGACATGAAC................................................................................ 22 3 4 0.25 1 1 0 0 0 0 0
...................................................................................................ATGCCTACGAACGCGCACCA.................................................................................................................................... 20 3 7 0.14 1 1 0 0 0 0 0
.......................................................................................................................................CTGGACGGACGGGAGCTCAC................................................................................................ 20 3 7 0.14 1 0 0 0 0 1 0
.........................................................................................................................................................................CCTATCCGGGTGTCGATGC............................................................... 19 3 17 0.06 1 1 0 0 0 0 0
..................................................................................................................................................................................GAACCGATGTCGATCCCGT...................................................... 19 3 18 0.06 1 1 0 0 0 0 0
.....GCAGCAGCAACAACAGCAGCA................................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 1 0 0 0
........................................AGCAACAACAGCAGCAGCAA............................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
.............................................CAACAGCAGCAGCAACAACAG......................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
...............CAACAGCAGCAGCAACAACA........................................................................................................................................................................................................................ 20 0 20 0.05 1 0 1 0 0 0 0
..........................GCAACAACTGCAGCAGCAACAACA......................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
....AGCAGCAGCAACAACAGCA.................................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0 0
..............................CAACAGCAGCAGCAACAACA......................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
.AGCAGCAGCAGCAACAACAGCAGCA................................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0
.........................................GCAACAACTGCAGCAGCAACAACA.......................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
..................CAGCAGCAGCAACAACAGCAGCAG................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
..........AGCAACAACAGCAGCAGCAA............................................................................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0
..................CAGCAGCAGCAACAACAGCAGC................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0
...............CAACAGCAGCAGCAACAACAG....................................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0
CAGCAGCAGCAGCAACAACAGCAG................................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.......................................................AGCAACAACAGCAGCAGCA................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
.................................CAGCAGCAGCAACAACAGCAGC.................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0
..............................CAACAGCAGCAGCAACAACAG........................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0 0 0
.AGCAGCAGCAGCAACAACAGCAG................................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0
..........................GCAACAACAGCAGCAGCAACAA........................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
...........GCAACAACTGCAGCAGCAACAACA........................................................................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0 0
.................................CAGCAGCAGCAACAACAGCAGCA................................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0
................................................CAGCAGCAGCAACAACAGCAGC..................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0 0
.........................AGCAACAACAGCAGCAGCAA.............................................................................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0
................................................CAGCAGCAGCAACAACAGCAGCAG................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
.................................CAGCAGCAGCAACAACAGCAGCAG.................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0
.................................................................................AAACTTGAACCACGGCCGA....................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
..................CAGCAGCAGCAACAACAGCAGCA.................................................................................................................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0
.............................................CAACAGCAGCAGCAACAACA.......................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
...................................................CAGCAGCAACAACAGCAGCAGCAG................................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0
...........GCAACAACAGCAGCAGCAACAA.......................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
...CAGCAGCAGCAACAACAGCAGC.................................................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0
...............CAACAGCAGCAGCAACAACAGC...................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0
.........................................GCAACAACAGCAGCAGCAACAA............................................................................................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0 0
CAGCAGCAGCAGCAACAACAGCAGCAGCA.............................................................................................................................................................................................................................. 29 0 20 0.05 1 0 0 0 0 0 1
................................................CAGCAGCAGCAACAACAGCAGCA.................................................................................................................................................................................... 23 0 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GTCGTCGTCGTCGTTGTTGTCGTCGTCGTTGTTGTCGTCGTCGTTGTTGTCGTCGTCGTTGTTGTCGTCGTCGTCTGTCGCTTTGGAGTTGGTGTCGGCTTCGGATGCTTACACGTGGTAGTGTTAGTAGACTATGACCTGCCTCCTCTCAAGTGGGTGTCGCTGTATTGGGTAGGCCCTCGGCTACGGCTAGAGCAGCTCCTAGACGTCAAGAGGTGGCCGATGCCTGGAGTCGGACATATGCGACTAGG
**************************************************((.((.((.......)).)).)).....((...........((((..((.......))..))))...............(((....(((((........)))))....)))........(((....))).))(((((.......)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V112
male body		 M040
female body
....................................................................................TGAGTTCGTATCGGCTTCGGA.................................................................................................................................................. 21 3 4 0.25 1 1 0
..................................................................................................................GTGGAAGCGTTAGTATACTA..................................................................................................................... 20 3 9 0.11 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:11298590-11298840 + dps_1161 CAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCA------GCAACAACAGCAGC---AGCAACAACAGCAGCAGCAGA--------------------------------------------------------------------------------------------------------CAGCGAAACCTC---------------------AACCACAGCCGA------------------------AGCCT---------ACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG-TGCACCAT-------------------------------------------------------------------------CACAATCATCTGATACTGGACGGAGGAGAGTTCACCCA------CAGCGAC-ATAACCCATCCGGGAGCC------------------------------------------------------------------------------GATGCCGATCTCGTCGA-GGATCTGCAG------TTCTCCACCGGCTACGGACCTCAGCCTG------------------------------------TATACGCT--------GATC------------------------------------------------------------C
droPer2 scaffold_4:6701573-6701806 + dpe_1634 --GCAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCA------GCAACAACAGCAGC---AGCAGACAGCGAAACCTC--------------------------------------------------------------------------------------------------------------------------------------------AACCTCAGCCGA------------------------AGCCT---------ACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG-TCCACCAT-------------------------------------------------------------------------CACAATCATCTGATACTGGACGGAGGAGAGTTCACCCA------CAGCGAC-ATCACCCATCCGGGAGCC------------------------------------------------------------------------------GATGCCGATCTCGTCGA-GGATCTGCAG------TTCTCCACCGGCTACGGACCTCAGCCTG------------------------------------TATACGCG--------GATC------------------------------------------------------------C
droWil2 scf2_1100000004822:2233960-2234245 - CGAGAACAACAACAACTAAAGTGACCACAACGAGACCCAAGCCAAAACCA---AAGCCTA----AGCCGGTGCCACAGCTGGTGG--------------------------------------------------------------------------------------------------------AGACAATGAAACG---------------------ACCCAAGCCAA------------------------AGCCTGCACAGCAGACCA--------------------------------------------------------CAGCGTCGACAACCACCAC-------------------------------------------------------------------------------------------------------------------------------CACACATA-TGCATCAT-------------------------------------------------------------------------CATAATCATCTGATACTGGATGGTGGTGAGTTCACACA------CAGCGAT-ATTACCCATCCGGGAGCC------------------------------------------------------------------------------GATGCTGATTTGGTAGA-AGATTTGCAA------TTCTCAACGGGCTATGGACCACAGCCTA------------------------------------TTTATGTG--------GAAC------------------------------------------------------------C
droVir3 scaffold_13049:5084250-5084483 - CAGCTGCAGCAGCTCCACCAGCAACAGCAGCTGCAGCTGCA------GCAGCAACAGGCGC---AGCAGCAGCAGCAGCAGCAGCAGCAGTTGATCAGCAAC------AAC---------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCCATTTG-------------------------------------------------------------------------CGCAATGCCCTGCTCCAGGGC--------GTGCCCGCC------CAGCCAC-AGCAGACGCCAAC--------------------GCCCGCAGTGGAA--------------------------------------------------GATGCCGCTGCCGCCTC-G---------AAGGAGCTG----CCAGCCACAGCCGTCACGCCC---------------------------------TG-TTTACAGG--------GCAC------------------------------------------------------------C
droMoj3 scaffold_6540:5209757-5209998 - CAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAACA------GCAGCAACAACAGC---AGCACCAACAACAACAGCAGC--------------------------------------------------------------------------------------------------------AGCAGCAGCAACATCAGGATTCACTGCATCCAC---ATAGCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC-------------ATC---------AACAGCCGCAGAA-----------TACACATC-AGCAGGGACATGCACACCTGACCCAGGTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCCTCCGCCTT-C---------AAAT---------TTAGCCACA-------CGGCGGTCATATCCAGCTCT----GC------------TG-TCTATGCA--------GCAG------------------------------------------------------------C
droGri2 scaffold_15245:10857154-10857385 - AAGCTCAGGC-GAAGCCTGTGCCGCAGCTTGCAGAGGCAAT------GAAGCGTCCAGTGC---AGCAGTTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------CCCAAGCCAA------------------------AGCCTGCTCAGCACACCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-TGCATCAT-------------------------------------------------------------------------CACAATCATCTCATCTTGGATGGCGGTGAGTTCACGCA------CAGTGAT-ATCACACATCCCGGCGCA------------------------------------------------------------------------------GATGCTGATCTGGTCGA-GGATTTGCAA------TTCTCCACTGGCTATGGTCCACAACCAG------------------------------------TCTATGT-----------GC------------------------------------------------------------A
droAna3 scaffold_12916:2925821-2926047 - CAGGTGCAACAGTTGCAACAGCAGCAGCAACAGTTGTTGCA------GCAACAACAGCAGC---AGCAGCAACAACAGCAGCAGC-----------------AGCAGCATCAGCCGC---------------A---------------------------------------------------------GCA--------------------------------------------------------GCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------A-----AC---GACCACCGCCTACGCATCTGCACGAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCTGAGTCATCAACTGGCCCACCAGCGGAACCGGGTGA-TGACCTCCAGCACGCTCTCTCAGCTGACCTCGCCCCCC-----G------------------------------------CCCACGCT--------TCTC------------------------------------------------------------A
droBip1 scf7180000395553:7726-7979 - CAACAGCAACACCAACAGCAGCAGCAGCAACAGCAACAGCA------GCAGCAACAGCAACAGCAGCAGGCACAGCAACAGCAGC--------------------------------------------------------------------------------------------------------AGGCACAGCAACAGCAGCAGGCACAGCAGCCGC---AAC-----AGCACCACCCACAACAACAACAACAAC---------------------------------A---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCAGCAAT-------------------------------------------------------------------------CACAACAACATAAGCAACAACAGCAGCAACTTCTCC----------------------------------AACAAAAG-----------------------------------CAACAGCAGCAGCAGCAACAGCAACAT---------------------------------------------------------------CAGGCCC------------------------------------TGCAACAG------CA--ACATCAAGCCA---------------------------------------------------C
droKik1 scf7180000302398:418589-418845 - CTGCAGCAGCAGCATCAACAGCAACACCAGCAGCAGCAACA------ACATCAACAGCAGC---AGCAGCAACACCACCAGCAAC-----------------AACACCAGCAACAACACCACCAGCAGCAGCAT------------------------------------------------------------------CAGCAGCTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAACAGCAACTGC-------------AGCAGCAGCAACAACAGCAGCAACA-----------TCTCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAA------------------------------------------------------------------CATCTCC------------------------------------AGCAACAG------CA--ACAGCAGGCCACCAACAAAATGCTGATCATACCCAAGCCCATAGAGTCGATGATGCCCAGTCC
droFic1 scf7180000453778:39465-39702 + CAACAGCAACAACAGCAGCAACAGCAACAACAGCAGCAACA------TCAGCAGC---------AGCAGCGACCTGTACAGCAGA--------------------------------------------------------------------------------------------------------CG----AGCAACTCCA----------C------ACCCGCAAC-----------------------AGCAATCCT---------ACGA-----------TTCACCA---GCCAG---AGCAATCCCACA------------------------------------------------------------------------------------------------ATGAC---GCAACTGC-------------AGCAG---------CAGCAACAG-----------------------------------------------------------------------------CAG-----------------------------------------------------------------------------------------------------TTGGCCGTCCAGCATTTGAGCATATCGCCGCAGGCCCTCGGCCACAGCAGCAATGGCAGCAA------------------------------------------------------------------CTCG------------------------------------CCCAAGAG------CA--AC------------------------------------------------------------A
droEle1 scf7180000491047:337841-338082 - CAGCAACAGCAGCAGCAAGAGCAACAGCAACAACAGCAGCA------AGAGCAACAGCAAC---AACAGCAGCAACAGCAGCAGCAGCAG-----C---AACAAC---AGCAGCAAC---------------AACAACAGCAGACACAACAGCAGCAACAACAACAGCAGCAGCAGCAACAACAGCAGCAGCC--------------------------------------------------------GCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------A-----AC---AACCACAGCCCGTGCA-------------------------------------------------------------------------GCAA-----------------------------------------ATCC--------------------------------------------------------------------------------------------------------AT-----------------------------------CAACCGCAACAACAGCAACAGCAGCAA---------------------------------------------------------------CATGCGC------------------------------------TGCAAATG------CA--AC------------------------------------------------------------A
droRho1 scf7180000779481:176060-176316 - CAGCAGCAGCAGCAACAACAGCAGCAACAACAACAGCAGCA------GCAGCTGCAACAGC---ATCCCCACCAGCAACAGCAAC--------------------CACACCACCAGC-------------------------------------------------------------------------------------------------------------------AT------------------------CCCCT---------CCAGATGCTCTCCAATTCACAA---ACCTCGATTGC---------------------------------TGGCAACCAATATATGAGCTCGCCTGGGGGCCTGCAGCATGCCCAATCGCAGACCT-CGATGGCATCCTC--GTCGC---TCAATGGC-------------AGCAG---------CAGCAACCTGC-----------TGCACGGCCACCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------------------------------------------------------C----------ATG------------------------------------CC---CAC------CA--TC------------------------------------------------------------C
droBia1 scf7180000302428:1708468-1708711 + CAACAACAGCGGCAATAGCAACAACAGCAGCGGCAGCAACA------CCGGCCACAGCAGC---AGCAGCAGCGGCAGCAACAGC-----------------AACAGCAATACCTGC---------------AA------------------------------------------------------------------CAGC-----------------------------------------------AGCAGCAGC---------------------------------A---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----ACCAG-----------------------------------------------------CACCAC--------------CAC--------GACGCTGTAC----ACGTGCTCCAGCGCCTCCTCGTCGCTGATTGCCCAGCC-GCCGCC------------------------------------------------------------------------------AACGAAGATATTTAAGACGGATCACCAT------CTGTGCGCCGCCTACGGACTGCCGACCG------------------------------------CCACCGCC----------GC------------------------------------------------------------C
droTak1 scf7180000415872:839347-839596 - GAGCAGCAGCAGCAGCGCCAGCAGCAGCAGCAACTGCAGCA------GCACCGCGAGCAGC---AGCACCACCAGCAGCAGCAGC---AGC--GCGAGCAAC------AGCAGCAGC-----------------------------------------------------------------------------------------------------------------------ACCGCGAGCAGCAGCAACAGCAAC---------------------------------ACCAGC------AGCAGTCCAGCGAGAAGAGTCCGCCCACCTCGTCCG-------------------------------CCGCAGCCGCCGCCG---------------------------------------------------------------------------------------------------------------------------------------CCTCTTCCTCCTCCTCTC--------------------------------------------------------------------------------------------------ATCATCTG-----------------------------------CAACA------GCAGCA-----------------------------------------------------------GCAGCGACA-------GCACT------------------------------------TGCATCTGCAGCAGCAGCAC------------------------------------------------------------C
droEug1 scf7180000409711:669000-669217 + CAACAGCAGCTGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCAATACCA---GCAACTGC---AGCAGCAGCAGCAGCTGCAGC--------------AACAACAGCAACACCAACACTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-------------AACAG---------CAGCAACAGACCCTGCCACCGCCACC-----------------CAT------------------------------------ACAACATCAGCAATACAACACAGCGGCCATCACGCCCACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------A----------------CCAACAACTCCAACAGCAACAACATCAGCAA------CA--GC------------------------------------------------------------A
dm3 chrX:3749806-3750039 + CAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCA------GCAGCAACAACAGC---AGCAACAACAGCAGCAGCAAC-----------------AGCAGCAGCAGCAGC---------------AA------------------------------------------------------------------CACCAGGAGT-----------------------TGTACCGCCAGCAGCAGCTACA--------------------T------------------------------------------------------------------------------------------------------------------------------------------CGCACTAGTATGAGCGGCATAGCCAGCCAGC---------AACACTTGCAG-----------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------TTGGATGCACAGTACACCACCATGCCGC----GTC---------------------------------------------------------------------CCTTGCATCATTCACA-------GCTTG----------------------------------------------GTAGCTACTC------------------------------------------------------------T
droSim2 x:7913874-7914104 - CAGCAACACCAGCAGCAGCAGCAGCAGCAACATCAGTCCCA------GCAGCAACATCTCC---ACCAGCAACACCAGGCGAACC-----------------AGCAGCAATCGCTGC---------------TC------------------------------------------------------------------CAAC---------------------AGAGCCAGAATCACACGCAATATGG-------------------------------------------------------------------------------------------CAGCTACCAT-------------------------------------------------------------------------------------------------------------------------------CATG-----------------CGTACCAGGCACAGGTGCAGCCGCATCCCCTCACGCCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA-GTAGCTCCGC------ATCCCCGCCAGCAACTG-CTGCGCCCGG------------------------------------AGCAAGTG------CA--GC------------------------------------------------------------A
droSec2 scaffold_1:2499824-2500026 - CAGCAGAAGCCACAGCAGGTGACGAAACCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCAAGCCCTA------------------------AGCCTGCCCAGTCCACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-ACCACCAC-------------------------------------------------------------------------CACAACCACTTGATCCTGGACGGTGGCGAGTTCACGCA------CAGTGAC-ATCACCCACCCCGGAGCA------------------------------------------------------------------------------GATGCCGATCTCGTGGA-GGATCTGCAA------TTCTCCACTGGCTATGGCCCCCACCCTG------------------------------------TGTACGCT--------GAAC------------------------------------------------------------C
droYak3 X:18730713-18730951 - CGCCAGCAGCAGCAGCAACTGCAGCAGCACCGCGAGCAGCA------GCACCAGCAGCATC---AGCAGCAGCGCGAGCATCTGC--------------AGCAGCAGCATCGCGAGC---------------AT------------------------------------------------------------------CTGC-----------------------------------------------AGCAGCAGCATC---------GCGA-----------TCA-------GC------AGCAGTCCAGCGAGAAAAGTCCGCCCACCTCGTCCA-------------------------------CCGCAGCCGCCGCAGCCGCCGCCCATCAGACGCATCCGC------------ATTCGC-------------AGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAG-CAGCAGCGGC------------------------------------AGCATTTG------CA--TC------------------------------------------------------------T
droEre2 scaffold_4820:3624559-3624794 + CAGCAGCAGCACCAGCAACACCAGCAGCAACAGCAGCAGCA------CCAGCTGCATCATC---AGCAGCAGCAGATGCAGCAGT--------------------------------------------------------------------------------------------------------CGGCGCAGCAACTG-----------------------AC-----ATCCGCTTCCAATACACCAGCAACATC---------------------------------A---GC--------------------------------------------------------------------------------------------A-----AA---GGCCAGCGGCAAGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------GGATCGGGATCGGGATCGGCTTCGGC----------------------------------CTC--------------------------------------------------GGGATCTGGGTCAGGAT-----------------CGGGTTCA-GGATCG-------------------------------GGCT----------------CTAACTACTC--TCAGAAGC---TGCAGCAG------CA--AC------------------------------------------------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCA------GCAACAACAGCAGC---AGCAACAACAGCAGCAGCAGA--------------------------------------------------------------------------------------------------------CAGCGAAACCTC---------------------AACCACAGCCGA------------------------AGCCT---------ACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG-TGCACCAT-------------------------------------------------------------------------CACAATCATCTGATACTGGACGGAGGAGAGTTCACCCA------CAGCGAC-ATAACCCATCCGGGAGCC------------------------------------------------------------------------------GATGCCGATCTCGTCGA-GGATCTGCAG------TTCTCCACCGGCTACGGACCTCAGCCTG------------------------------------TATACGCT--------GATC------------------------------------------------------------CSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....GCAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
........................................A------GCAACAACAGCAGC---AGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
...................................................CAACAGCAGC---AGCAACAACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
...............CAACAGCAGCAGCAACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
....AGCAGCAGCAACAACAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
..............................CAACAGCAGCA------GCAACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
.AGCAGCAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510100000000
..................CAGCAGCAGCAACAACAGCAGCA------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..........AGCAACAACAGCAGCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
..................CAGCAGCAGCAACAACAGCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
...............CAACAGCAGCAGCAACAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
CAGCAGCAGCAGCAACAACAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
................................................................AGCAACAACAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.................................CAGCAGCA------GCAACAACAGCAGC---...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
..............................CAACAGCAGCA------GCAACAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
.AGCAGCAGCAGCAACAACAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
..........................GCAACAACAGCAGCA------GCAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
.................................CAGCAGCA------GCAACAACAGCAGC---A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010000
......................................................CAGCAGC---AGCAACAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010000000
.........................AGCAACAACAGCAGCA------GCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
......................................................CAGCAGC---AGCAACAACAGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.................................CAGCAGCA------GCAACAACAGCAGC---AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..................CAGCAGCAGCAACAACAGCAGCA------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010000
...................................................CAACAGCAGC---AGCAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
.........................................................CAGC---AGCAACAACAGCAGCAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
...........GCAACAACAGCAGCAGCAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
...CAGCAGCAGCAACAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100000000
...............CAACAGCAGCAGCAACAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
...............................................GCAACAACAGCAGC---AGCAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000100000
CAGCAGCAGCAGCAACAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.0510001000000
......................................................CAGCAGC---AGCAACAACAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000010000
droPer2
--GCAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCA------GCAACAACAGCAGC---AGCAGACAGCGAAACCTC--------------------------------------------------------------------------------------------------------------------------------------------AACCTCAGCCGA------------------------AGCCT---------ACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATG-TCCACCAT-------------------------------------------------------------------------CACAATCATCTGATACTGGACGGAGGAGAGTTCACCCA------CAGCGAC-ATCACCCATCCGGGAGCC------------------------------------------------------------------------------GATGCCGATCTCGTCGA-GGATCTGCAG------TTCTCCACCGGCTACGGACCTCAGCCTG------------------------------------TATACGCG--------GATC------------------------------------------------------------CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..GCAGCAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000
..........................GCAACAACAGCAGCA------GCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
............................AACAACAGCAGCA------GCAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
.............AACAACAGCAGCAGCAACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droWil2
CGAGAACAACAACAACTAAAGTGACCACAACGAGACCCAAGCCAAAACCA---AAGCCTA----AGCCGGTGCCACAGCTGGTGG--------------------------------------------------------------------------------------------------------AGACAATGAAACG---------------------ACCCAAGCCAA------------------------AGCCTGCACAGCAGACCA--------------------------------------------------------CAGCGTCGACAACCACCAC-------------------------------------------------------------------------------------------------------------------------------CACACATA-TGCATCAT-------------------------------------------------------------------------CATAATCATCTGATACTGGATGGTGGTGAGTTCACACA------CAGCGAT-ATTACCCATCCGGGAGCC------------------------------------------------------------------------------GATGCTGATTTGGTAGA-AGATTTGCAA------TTCTCAACGGGCTATGGACCACAGCCTA------------------------------------TTTATGTG--------GAAC------------------------------------------------------------CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CAGCTGCAGCAGCTCCACCAGCAACAGCAGCTGCAGCTGCA------GCAGCAACAGGCGC---AGCAGCAGCAGCAGCAGCAGCAGCAGTTGATCAGCAAC------AAC---------------------AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCCATTTG-------------------------------------------------------------------------CGCAATGCCCTGCTCCAGGGC--------GTGCCCGCC------CAGCCAC-AGCAGACGCCAAC--------------------GCCCGCAGTGGAA--------------------------------------------------GATGCCGCTGCCGCCTC-G---------AAGGAGCTG----CCAGCCACAGCCGTCACGCCC---------------------------------TG-TTTACAGG--------GCAC------------------------------------------------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCGTCACGCCC---------------------------------TG-.................................................................................1711.001000000000000000000000000000000000000000000000000000000000100000
.................................................AGCAACAGGCGC---AGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.141001000000000000000000000000000000000000000000000000000000000000
.........................AGCAGCTGCAGCTGCA------GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.081001000000000000000000000000000000000000000000000000000000000000
........................................................GGCGC---AGCAGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................CAGCAGCAGCAGCAGCAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
CAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAACA------GCAGCAACAACAGC---AGCACCAACAACAACAGCAGC--------------------------------------------------------------------------------------------------------AGCAGCAGCAACATCAGGATTCACTGCATCCAC---ATAGCCAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTC-------------ATC---------AACAGCCGCAGAA-----------TACACATC-AGCAGGGACATGCACACCTGACCCAGGTGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCCTCCGCCTT-C---------AAAT---------TTAGCCACA-------CGGCGGTCATATCCAGCTCT----GC------------TG-TCTATGCA--------GCAG------------------------------------------------------------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................GCACCAACAACAACAGCAGC--------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171100000
....................................................................CCAACAACAACAGCAGC--------------------------------------------------------------------------------------------------------AGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102010010
..................................................................CACCAACAACAACAGCAGC--------------------------------------------------------------------------------------------------------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.071100000
...................................................................ACCAACAACAACAGCAGC--------------------------------------------------------------------------------------------------------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.061000100
...CAGCAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.............................................................................ACAGCAGC--------------------------------------------------------------------------------------------------------AGCAGCAGCAACATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
..................................AGCAACA------GCAGCAACAACAGC---AG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
............................AACAACAGCAACA------GCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
droGri2
AAGCTCAGGC-GAAGCCTGTGCCGCAGCTTGCAGAGGCAAT------GAAGCGTCCAGTGC---AGCAGTTGAAA-----------------------------------------------------------------------------------------------------------------------------------------------------CCCAAGCCAA------------------------AGCCTGCTCAGCACACCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-TGCATCAT-------------------------------------------------------------------------CACAATCATCTCATCTTGGATGGCGGTGAGTTCACGCA------CAGTGAT-ATCACACATCCCGGCGCA------------------------------------------------------------------------------GATGCTGATCTGGTCGA-GGATTTGCAA------TTCTCCACTGGCTATGGTCCACAACCAG------------------------------------TCTATGT-----------GC------------------------------------------------------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CAGGTGCAACAGTTGCAACAGCAGCAGCAACAGTTGTTGCA------GCAACAACAGCAGC---AGCAGCAACAACAGCAGCAGC-----------------AGCAGCATCAGCCGC---------------A---------------------------------------------------------GCA--------------------------------------------------------GCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------A-----AC---GACCACCGCCTACGCATCTGCACGAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCTGAGTCATCAACTGGCCCACCAGCGGAACCGGGTGA-TGACCTCCAGCACGCTCTCTCAGCTGACCTCGCCCCCC-----G------------------------------------CCCACGCT--------TCTC------------------------------------------------------------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCTGAGTCATCAAC..........................................................................................................................................................................................2311.001100000
........................................................................................................CAGCATCAGCCGC---------------A---------------------------------------------------------GCA--------------------------------------------------------GCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGAACCGGGTGA-TGACCT...........................................................................................................................................................2011.001100000
.....................................TGCA------GCAACAACAGCAGC---AGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.402110000
.....................................................................CAACAACAGCAGCAGC-----------------AGCAGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.331100000
........................................................................CAACAGCAGCAGC-----------------AGCAGCATCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201010000
....................................................AACAGCAGC---AGCAGCAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000003
................................................CAACAACAGCAGC---AGCAGCAACAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28100.101010000
..........................................................................ACAGCAGCAGC-----------------AGCAGCATCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.101100000
.................................................AACAACAGCAGC---AGCAGCAACAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27110.091100000
........................................A------GCAACAACAGCAGC---AGCAGCAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.081010000
................................................................AGCAGCAACAACAGCAGCAGC-----------------AGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
..........................................................AGC---AGCAGCAACAACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.....................................................ACAGCAGC---AGCAGCAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
..................................................................CAGCAACAACAGCAGCAGC-----------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
...................................................................AGCAACAACAGCAGCAGC-----------------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
........................................A------GCAACAACAGCAGC---AGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.........................................................CAGC---AGCAGCAACAACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000
droBip1
CAACAGCAACACCAACAGCAGCAGCAGCAACAGCAACAGCA------GCAGCAACAGCAACAGCAGCAGGCACAGCAACAGCAGC--------------------------------------------------------------------------------------------------------AGGCACAGCAACAGCAGCAGGCACAGCAGCCGC---AAC-----AGCACCACCCACAACAACAACAACAAC---------------------------------A---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-GCAGCAAT-------------------------------------------------------------------------CACAACAACATAAGCAACAACAGCAGCAACTTCTCC----------------------------------AACAAAAG-----------------------------------CAACAGCAGCAGCAGCAACAGCAACAT---------------------------------------------------------------CAGGCCC------------------------------------TGCAACAG------CA--ACATCAAGCCA---------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
CTGCAGCAGCAGCATCAACAGCAACACCAGCAGCAGCAACA------ACATCAACAGCAGC---AGCAGCAACACCACCAGCAAC-----------------AACACCAGCAACAACACCACCAGCAGCAGCAT------------------------------------------------------------------CAGCAGCTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAACAGCAACTGC-------------AGCAGCAGCAACAACAGCAGCAACA-----------TCTCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAA------------------------------------------------------------------CATCTCC------------------------------------AGCAACAG------CA--ACAGCAGGCCACCAACAAAATGCTGATCATACCCAAGCCCATAGAGTCGATGATGCCCAGTCCSizeHit CountTotal NormTotal
No Reads
droFic1
CAACAGCAACAACAGCAGCAACAGCAACAACAGCAGCAACA------TCAGCAGC---------AGCAGCGACCTGTACAGCAGA--------------------------------------------------------------------------------------------------------CG----AGCAACTCCA----------C------ACCCGCAAC-----------------------AGCAATCCT---------ACGA-----------TTCACCA---GCCAG---AGCAATCCCACA------------------------------------------------------------------------------------------------ATGAC---GCAACTGC-------------AGCAG---------CAGCAACAG-----------------------------------------------------------------------------CAG-----------------------------------------------------------------------------------------------------TTGGCCGTCCAGCATTTGAGCATATCGCCGCAGGCCCTCGGCCACAGCAGCAATGGCAGCAA------------------------------------------------------------------CTCG------------------------------------CCCAAGAG------CA--AC------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
CAGCAACAGCAGCAGCAAGAGCAACAGCAACAACAGCAGCA------AGAGCAACAGCAAC---AACAGCAGCAACAGCAGCAGCAGCAG-----C---AACAAC---AGCAGCAAC---------------AACAACAGCAGACACAACAGCAGCAACAACAACAGCAGCAGCAGCAACAACAGCAGCAGCC--------------------------------------------------------GCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------A-----AC---AACCACAGCCCGTGCA-------------------------------------------------------------------------GCAA-----------------------------------------ATCC--------------------------------------------------------------------------------------------------------AT-----------------------------------CAACCGCAACAACAGCAACAGCAGCAA---------------------------------------------------------------CATGCGC------------------------------------TGCAAATG------CA--AC------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAGCAGCAGCAACAACAGCAGCAACAACAACAGCAGCA------GCAGCTGCAACAGC---ATCCCCACCAGCAACAGCAAC--------------------CACACCACCAGC-------------------------------------------------------------------------------------------------------------------AT------------------------CCCCT---------CCAGATGCTCTCCAATTCACAA---ACCTCGATTGC---------------------------------TGGCAACCAATATATGAGCTCGCCTGGGGGCCTGCAGCATGCCCAATCGCAGACCT-CGATGGCATCCTC--GTCGC---TCAATGGC-------------AGCAG---------CAGCAACCTGC-----------TGCACGGCCACCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------------------------------------------------------C----------ATG------------------------------------CC---CAC------CA--TC------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
CAACAACAGCGGCAATAGCAACAACAGCAGCGGCAGCAACA------CCGGCCACAGCAGC---AGCAGCAGCGGCAGCAACAGC-----------------AACAGCAATACCTGC---------------AA------------------------------------------------------------------CAGC-----------------------------------------------AGCAGCAGC---------------------------------A---A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----ACCAG-----------------------------------------------------CACCAC--------------CAC--------GACGCTGTAC----ACGTGCTCCAGCGCCTCCTCGTCGCTGATTGCCCAGCC-GCCGCC------------------------------------------------------------------------------AACGAAGATATTTAAGACGGATCACCAT------CTGTGCGCCGCCTACGGACTGCCGACCG------------------------------------CCACCGCC----------GC------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
GAGCAGCAGCAGCAGCGCCAGCAGCAGCAGCAACTGCAGCA------GCACCGCGAGCAGC---AGCACCACCAGCAGCAGCAGC---AGC--GCGAGCAAC------AGCAGCAGC-----------------------------------------------------------------------------------------------------------------------ACCGCGAGCAGCAGCAACAGCAAC---------------------------------ACCAGC------AGCAGTCCAGCGAGAAGAGTCCGCCCACCTCGTCCG-------------------------------CCGCAGCCGCCGCCG---------------------------------------------------------------------------------------------------------------------------------------CCTCTTCCTCCTCCTCTC--------------------------------------------------------------------------------------------------ATCATCTG-----------------------------------CAACA------GCAGCA-----------------------------------------------------------GCAGCGACA-------GCACT------------------------------------TGCATCTGCAGCAGCAGCAC------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droEug1
CAACAGCAGCTGCAACAGCAGCAGCAACAGCAGCAGCAAGCGCAATACCA---GCAACTGC---AGCAGCAGCAGCAGCTGCAGC--------------AACAACAGCAACACCAACACTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC-------------AACAG---------CAGCAACAGACCCTGCCACCGCCACC-----------------CAT------------------------------------ACAACATCAGCAATACAACACAGCGGCCATCACGCCCACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------A----------------CCAACAACTCCAACAGCAACAACATCAGCAA------CA--GC------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
CAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCA------GCAGCAACAACAGC---AGCAACAACAGCAGCAGCAAC-----------------AGCAGCAGCAGCAGC---------------AA------------------------------------------------------------------CACCAGGAGT-----------------------TGTACCGCCAGCAGCAGCTACA--------------------T------------------------------------------------------------------------------------------------------------------------------------------CGCACTAGTATGAGCGGCATAGCCAGCCAGC---------AACACTTGCAG-----------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------TTGGATGCACAGTACACCACCATGCCGC----GTC---------------------------------------------------------------------CCTTGCATCATTCACA-------GCTTG----------------------------------------------GTAGCTACTC------------------------------------------------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................AGCAGCAGC---------------AA------------------------------------------------------------------CACCAGGAGT-----------------------TGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................TACA--------------------T------------------------------------------------------------------------------------------------------------------------------------------CGCACTAGTATGAGCGGCATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................AGCTACA--------------------T------------------------------------------------------------------------------------------------------------------------------------------CGCACTAGTATGAGCGGCATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTACACCACCATGCCG..............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATGCCGC----GTC---------------------------------------------------------------------CCTTG............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CGCACTAGTATGAGCGGCATAGCCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCCGC----GTC---------------------------------------------------------------------CCTTGCATCATTCACA-------G.........................................................................................................................2811.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAG-----------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------TTGGATGCACAGTACACCAC.....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGCAG-----------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------TTGGATGCC................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAG-----------------------------------------------------------------------------CAA-----------------------------------------------------------------------------------------------------TTGGATGCACAGTACACCA......................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................GCTACA--------------------T------------------------------------------------------------------------------------------------------------------------------------------CGCACTAGTATGAGCGGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................AGCAGCAGC---------------AA------------------------------------------------------------------CACCAGGAGT-----------------------TGTACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCATGCCGC----GTC---------------------------------------------------------------------CCTTGC...........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................................................................................GCTACA--------------------T------------------------------------------------------------------------------------------------------------------------------------------CGCACTAGTATGAGCGGCATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......AGCAGCAACAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AC-----------------AGCAGCAGCAGCAGC---------------AA------------------------------------------------------------------CA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GCAACAACAGC---AGCAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................AGCAGCAAC-----------------AGCAGCAGCAGCAGC---------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................AGCAAC-----------------AGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CAGCAGCAACAACAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGCAACAACAGCAGCA------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........AGCAACAACAGCAGCAGCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CAGCAACAACAGC---AGCAACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CAGCAACAACAGC---AGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
CAGCAGCAGCAGCAACAACAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................CAGCAGCAGCAACAACAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................ACAGCAGCAGCAACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......CAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................CAACAACAGCAGCAGCAAC-----------------AGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................................................CAGCAGCAGCAAC-----------------AGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..GCAGCAGCAGCAACAACAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGCAGCAGCAGCAACAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................AACAGCAGCAGCAAC-----------------AGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............AACAACAGCAGCAGCAACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................ACAGCAGCAGCAAC-----------------AGCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................CAGC---AGCAACAACAGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CAGCAACACCAGCAGCAGCAGCAGCAGCAACATCAGTCCCA------GCAGCAACATCTCC---ACCAGCAACACCAGGCGAACC-----------------AGCAGCAATCGCTGC---------------TC------------------------------------------------------------------CAAC---------------------AGAGCCAGAATCACACGCAATATGG-------------------------------------------------------------------------------------------CAGCTACCAT-------------------------------------------------------------------------------------------------------------------------------CATG-----------------CGTACCAGGCACAGGTGCAGCCGCATCCCCTCACGCCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA-GTAGCTCCGC------ATCCCCGCCAGCAACTG-CTGCGCCCGG------------------------------------AGCAAGTG------CA--GC------------------------------------------------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCCTCACGCCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC....................................................................................................................................................................1911.00100001000000000000
droSec2
CAGCAGAAGCCACAGCAGGTGACGAAACCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCAAGCCCTA------------------------AGCCTGCCCAGTCCACGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA-ACCACCAC-------------------------------------------------------------------------CACAACCACTTGATCCTGGACGGTGGCGAGTTCACGCA------CAGTGAC-ATCACCCACCCCGGAGCA------------------------------------------------------------------------------GATGCCGATCTCGTGGA-GGATCTGCAA------TTCTCCACTGGCTATGGCCCCCACCCTG------------------------------------TGTACGCT--------GAAC------------------------------------------------------------CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CGCCAGCAGCAGCAGCAACTGCAGCAGCACCGCGAGCAGCA------GCACCAGCAGCATC---AGCAGCAGCGCGAGCATCTGC--------------AGCAGCAGCATCGCGAGC---------------AT------------------------------------------------------------------CTGC-----------------------------------------------AGCAGCAGCATC---------GCGA-----------TCA-------GC------AGCAGTCCAGCGAGAAAAGTCCGCCCACCTCGTCCA-------------------------------CCGCAGCCGCCGCAGCCGCCGCCCATCAGACGCATCCGC------------ATTCGC-------------AGCAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAG-CAGCAGCGGC------------------------------------AGCATTTG------CA--TC------------------------------------------------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................GCAGCATC---AGCAGCAGCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAG-CAGCAGCGG......................................................................................................................21200.05101000000000
......CAGCAGCAGCAACTGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
....AGCAGCAGCAGCAACTGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
droEre2
CAGCAGCAGCACCAGCAACACCAGCAGCAACAGCAGCAGCA------CCAGCTGCATCATC---AGCAGCAGCAGATGCAGCAGT--------------------------------------------------------------------------------------------------------CGGCGCAGCAACTG-----------------------AC-----ATCCGCTTCCAATACACCAGCAACATC---------------------------------A---GC--------------------------------------------------------------------------------------------A-----AA---GGCCAGCGGCAAGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------GGATCGGGATCGGGATCGGCTTCGGC----------------------------------CTC--------------------------------------------------GGGATCTGGGTCAGGAT-----------------CGGGTTCA-GGATCG-------------------------------GGCT----------------CTAACTACTC--TCAGAAGC---TGCAGCAG------CA--AC------------------------------------------------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACTACTC--TCAGAAGC---TGCA.............................................................................2213.0030000300
....................................................................GCAGCAGATGCAGCAGT--------------------------------------------------------------------------------------------------------CGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000200
..........................................................................................................................................................................................................G-----------------------AC-----ATCCGCTTCCAATACACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGGGTCAGGAT-----------------CGGGTT....................................................................................................................................................................2011.0011000000
..............................................................................................................................................................................................................................................................AACATC---------------------------------A---GC--------------------------------------------------------------------------------------------A-----AA---GGCCAGCGGCAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
..........................................................................GATGCAGCAGT--------------------------------------------------------------------------------------------------------CGGCGCAGCAACTG-----------------------AC-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.....................................................GCATCATC---AGCAGCAGCAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000100
......................AGCAGCAACAGCAGCAGCA------CCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810001000
................................................................AGCAGCAGCAGATGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18160.0611000000
..................CACCAGCAGCAACAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010

Generated: 05/18/2015 at 12:09 AM