ID:

dps_1146

 Coordinate:

3:10169498-10169648 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.6 -3.2 -3.1

Flybase annnotation

CDS [Dpse\GA21745-cds]; exon [dpse_GLEANR_14258:6]; intron [Dpse\GA21745-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACCGTGGGGTTAATTATTGTGTCGTTTTACATTAATCCTATACGTTTTTTAAACATTAGTTGTATGTTCCAGTGAAATAGAATAAAGTCCCCAACTAGAACTATGCACACCCCTTTTATTTCAACAGTGGTTCCCGATAGTTAGGCCCCTTACAGGCACCGAAACTAATCAAAGTTTATTGTTCTTTGTTTCATTTTCAGCGATAATGGACTTCTTTCCGTTTCAGCAATGGTCCGATGTTTCCAATTTG
******************************************************..(((((((..(((((..........))))).......))))))).....*************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
 V112
male body
......................................................CATTAGTTGTATGTTCCAGTGAA.............................................................................................................................................................................. 23 0 1 2.00 2 2 0 0 0
..................................................................................ATAAAGTCCCCAACTAGAACTA................................................................................................................................................... 22 0 1 2.00 2 1 1 0 0
............AATTACTGTGTCGTTTTACA........................................................................................................................................................................................................................... 20 1 1 2.00 2 0 2 0 0
..................................................................................ATAAAGTCCCCAACTAGAAAA.................................................................................................................................................... 21 2 1 2.00 2 1 0 1 0
............AATTACTGTGTCGTTTTACATT......................................................................................................................................................................................................................... 22 1 1 2.00 2 0 2 0 0
............AATTACTGTGTCGTTTTACATTAATCCT................................................................................................................................................................................................................... 28 1 1 2.00 2 0 2 0 0
..................................................................................ATAAAGTCCCCAACTAGAACA.................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
..................................................................................ATAAAGTCCCCAACTAGAACTAAAA................................................................................................................................................ 25 3 1 1.00 1 0 1 0 0
......................................................CATTAGTTGTATGTTCCAGT................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0
...........TAATTACTGTGTCGTTTTACA........................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1
........................GTTTTACATTAATCCTATACGTT............................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
......................................................CATTAGTTGTATGTTCCAGTGA............................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
.........................................................TAGTTGTATGTTCCAGTGAAATAGA......................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..................................AATCCTATACGTTTTTTAAACA................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
............AATTATTGTGTCGTTTTACATT......................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
........................................................TTAGTTGTATGTTCCAGTGAAAT............................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
.........GTTAATTACTGTGTCGTTATACATT......................................................................................................................................................................................................................... 25 2 1 1.00 1 0 1 0 0
................ATTGTGTCGTTTTACATTAATCCTG.................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0
........................GTTTTACATTAATCCTATACGT............................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0
...CTTGGGGTTAATTATTGTGT.................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0
................................................................................GAATAAAGTCCCCAACTAGAACT.................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
................................................................................GAATAAAGTCCCCAACTAGA....................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
............AATTATTGTGTCGTTTTAC............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0
.....TGGGGTTAATTACTGTGTCGT................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0
...............TACTGTGTCGTTTTACATTA........................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0
......................................................CATTAGTTGTATGTTCCAGC................................................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0
..........................................................AGTTGTATGTTCCAGTGAAATAGA......................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
............AACTACTGTGTCGTTTTACATT......................................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0
..........................................................AGTTGTTTGTTCCAGGGAA.............................................................................................................................................................................. 19 2 2 1.00 2 2 0 0 0
.............................................................................ATAGAATAAAGTCCCCAACTAGAACC.................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0
.........GTTAATTATTGTGTCGTTTTACATT......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
.........GTTAATTACTGTGTCGTTTTA............................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 1
..................................................................................ATAAAGTCCCCAACTAGAA...................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
............AGTTATTGTGTCGTTTTACATTA........................................................................................................................................................................................................................ 23 1 1 1.00 1 0 1 0 0
...........................................................GTTGTATGTTCCAGTGAAAT............................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
...........................................................................AAATAGAATAAAGTCCCCAACTA......................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
...CGTGGGGTTAATTACTGTGTCGTT................................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0
...................GGGTCGTTTTACATTAATCCT................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0
.........GTTAATTATTGTGTCGTTTTAC............................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0
..........................TTTACATTAATCCTATACGTTTTTTAAAC.................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0
...................................................................................TAAAGTCCCCAACTAGAA...................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.....................GTCGTTTTACATTAATCCT................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0
....................................................................TCCAGTGAAATAGAATAAAG................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0
..............................................................................................................................................................................................................................TTCAGCAATGGTCCGATGTTTCCAATT.. 27 0 1 1.00 1 1 0 0 0
......GGGGTTAATTACTGTGTCGTTTTACA........................................................................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0
.............ATTACTGTGTCGTTTTACAT.......................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0
............................................................................AATAGAATAAAGTCCCCAACTAGAACT.................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
...CGTGGGGTTAATTACTGTGTC................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1
.................................................................................................................................................................................................................GACTTCTTTCCGTTTCAGCAATGGTCC............... 27 0 1 1.00 1 1 0 0 0
...............................................................................AGAATAAAGTCCCCAACTAGAACT.................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0
.............ATTACTGTGTCGTTTTACATT......................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0
.........GTTAATTACTGTGTCGTTTTACATT......................................................................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
...................................................................................TAAAGTCCCCAACTAGAAC..................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
..........................................................................GAAATAGAATAAAGTCCCCAA............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
...........TAATTACTGTGTCGTTTTAC............................................................................................................................................................................................................................ 20 1 1 1.00 1 1 0 0 0
..................................................................CTTCCAGTGAAATAGAATAAAGTCCC............................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
.............................................................TGTATGTTCCAGTGAAATAGA......................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.............................................................................ATAGAATAAAGTCCCCAACTAGAA...................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
.......................................................................AGTGAAATAGAATAAAGTCCCCAACT.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.....................GTCGTTTTACATTAATCCTATACGTT............................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
..................................................................................ATAAAGTCCCCAACTAGA....................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
...................................ATCCTATACGTTTTTTAAACATT................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
.............................................................................ATAGAATAAAGTCCCCAACT.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................TTCAGCGAGAATGGCCTCCT................................... 20 3 8 0.13 1 0 0 1 0
.......................................................................................................................................CGATCGTTAGACCACTTAC................................................................................................. 19 3 17 0.06 1 0 0 1 0
........................................................................................................................TTCTACAGTGTTTCCGGAT................................................................................................................ 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TTGGCACCCCAATTAATAACACAGCAAAATGTAATTAGGATATGCAAAAAATTTGTAATCAACATACAAGGTCACTTTATCTTATTTCAGGGGTTGATCTTGATACGTGTGGGGAAAATAAAGTTGTCACCAAGGGCTATCAATCCGGGGAATGTCCGTGGCTTTGATTAGTTTCAAATAACAAGAAACAAAGTAAAAGTCGCTATTACCTGAAGAAAGGCAAAGTCGTTACCAGGCTACAAAGGTTAAAC
***************************************************************************************************************************************************..(((((((..(((((..........))))).......))))))).....****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 GSM343916
embryo
 GSM444067
head
.....................CAGCAAAATGTAATTAGG.................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0
........................................................................................................................................................TGTCCGTGGCCTCGATTA................................................................................. 18 2 4 0.75 3 3 0 0
........................................................................................................................................................TGTCCGTGGCTTCGATTAC................................................................................ 19 2 3 0.33 1 1 0 0
.....................................................................................................................................................................................................AGTCGCGATTACATGAAGAAT................................. 21 3 3 0.33 1 0 1 0
........................................................................................................................................................................................TAAACAAAGTAAAAGTCGTTA.............................................. 21 2 9 0.11 1 1 0 0
........................................................................................................................................................TGTCCGTGGCTTCGATTACC............................................................................... 20 3 9 0.11 1 1 0 0
.........................................................................................................................................................GTCCGTGGCTTCGATTACC............................................................................... 19 3 20 0.10 2 2 0 0
.........................................................TTCAACAAACAAGGTCCCTT.............................................................................................................................................................................. 20 3 12 0.08 1 1 0 0
.......................................................................................................................................................TTGTCCGTGGCTTCGATT.................................................................................. 18 2 16 0.06 1 1 0 0
................................................................................................................................................................................................................................GTCGGTACAAGGCTTCAAA........ 19 3 16 0.06 1 0 0 1
.......................................................................................................................................................TTGTCCGTGGCCTCGATTA................................................................................. 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:10169448-10169698 - dps_1146 AACCG---------T-GGGGTT--AA-TTATTGTGTCGT-TTTACATTAATCCTATA--CG--TTTTTTAA--------ACATTAGTTGTATGTTCCAGTGAAA-------------TA-----GAATAAAG--T-CCC--CAACTAGAACTATGCACACC--CCTTT-----TATTT-----CAA----------------CA---GTGGTTCCCG-AT---AGTTAGGCCCC---TTACA----GG-------------CA------------------------------------CCGAAACTAATCAAAGTTTATTGTT-CT--TTGTT-TCATTTTCAGCGATAATGGACTTCTTTCCGTTTCAGCAATGGTCCGATGTTTCCAATTTG
droPer2 scaffold_4:5498672-5498922 - dpe_1616 AACCG---------T-GGGGTT--AA-TTATTGTGTCGT-TTTACATTAATCCTATA--CG--TTTTTTAA--------ACATTAGTTGTATGTTCCAGTGAAA-------------TA-----GAATAAAG--T-CCC--CAACTAGAACTATGCACACC--CCTTT-----TATTT-----CAA----------------CA---GTGGTTCCCG-AT---AGTTAGGCCCC---TTACA----GG-------------CA------------------------------------CCGAAACTAATCAAAGTTTATTGTT-CT--TTGTT-TCATTTTCAGCGATAATGGACTTCTTTCCGTTTCAGCAATGGTCCGATGTTTCCAATTTG
droWil2 scf2_1100000004513:1275616-1275875 + TTCCG---------C-CAC-----------ATTTGTCGT-TGTAAATTATTATTATA--GAATTTTTCT----------ATTTAAGTTTTAAGTTCCAGTGAAA-----------TATAGTCGCGAATAAAAAGT-CCCCCACACTAGAACTATATTGATATTGA-TT-TATTTATTT-----CTC----------------AA---GTGGTTCCCA-GT---AGT----TA-A---AGTTA----AC--------ACACAAGAACT-TTTAAAATC--------A-------------T--------------CTTTACTAAGGTCT-TAATT-T-CATTTCAGCCATCATGGACTATTTTCCATTTCCTCAATGGGGTGACATATCTAATAAG
droVir3 scaffold_12875:2200669-2200935 + AGCTT---------C-CT-TCC--AA-ATA-TTTGTCGT-CTTAAATTATTATTATA--AT--TTTTTT----------ATTTAAGTTGTAAGTTCCAGTGAAA-------------AAGTCGCAAATAAAC--T--CC--CCACTAGAACTAACCAGCCT--GTTTT-----TATTTGTGCTTAG-------ACTCTTCCCAA---GTGGTTCCTC-GT---AGG----CTAA---CTATCCGATC-----T---TATTTC----------------------CATTTTCAAATACAT---------------TCCTCTCAC---T--TACTC-TCCTTTGCAGCCATCATGGACTACTTTCAGCGCGATCAATCGGCCGATATATCCAATATG
droMoj3 scaffold_6496:23052058-23052321 - ATGTATGGCCCA--C-CATAAC-----------CC-----T--CCCTTATAATCATA--AT-TTTTTTT----------ATTTAAGTTATAAGTTCCAGTGACA-------------AATTCGCAAATAAAG--TCCAC--CCACTAGAACTAAAGAGCCT--GTTTT-----AATTTCCGTTTTA---G---ACGTATCCCAA---GTGGTTCTATGCTTATTGA----CTAT---CTTAT----C-----T---GAATTA----------------------TATTATTTATCATAT---------TCA-----CCTATA-------TTATA-T-TGTTATAGCAATCATGGACAGCTTTCAGTTCGAACAGTCGTCCGATATCTCCAATATG
droGri2 scaffold_15112:4322157-4322474 + CTCCA---------C-CACATTCCACACACATTTGTCGT-CTTAAATTATTATTATA--AT-GTTTTTT----------ATTTAAGTTGTAAGTTCCAGTGCAAAATGAAGAAAATTAAGTTGCAAATAAAT----TCC--CCACTAGAACTAAACTGCAT--GTTTT-----TGTTTCTTATTATTTACTACTATCTTCCCAA---GTGGTTCCAT-AT---TGAATAACCTT---ATATT----GT--------ACATATGTATA-TATATATCT--------ATCTTTATCTATAT-------CTGTATCAATATCAGTATTAA--ACTTTCTGTTTTATAGAATATATGGACTACTTTCCATTCGAGCATTCGTCGGATATATCCAATTTG
droAna3 scaffold_13266:12365052-12365315 - CAACC---------A-AA-C-C-CAT-TTAATTTGTCGT-TCCACCTTATTCTTTAA--CC--TTTTTT----------ACATAAGTTGTATGTTCCAGTGAT--------------GAGTCGCGAATAAAT--T-TTC--CCACTAGAACTGCACTTTCT--CCTTT-----TATTC-----AAA----------------GAGTGGTGGTTCCCG-CT---TGTTAATA-CT---CTTCC-----------CCTTAGTACCCG----C------TAATATTAGT-----------------ATCCCTTA-----CTAATATT-CT--CTTGT-CGCTTTCTAGAGATCATGGACTTGTTTCCGTCCCAGCAATGGTCTGATATATCCAACAGG
droBip1 scf7180000396547:120795-121068 + AACCA------ACCA-AA---CCCAT-TTAATTTGTCGT-TTCACCTTATTCTTATA--AC-CTTTCTT----------ACATAAGTTGTATGTTCCAGTGAT--------------GAGTCGCGAATAAAT--T-TTC--CCACTAGAACTGCACG-TTT--CCTTT-----TATTT-----GAA----------------GAGTGGTGGTTCCCG-CT---T---------T---CTATT-GATC-TTAT-CCTTAAGACTCCCTCTC------TAGAATAAGA-----------------ATCCCATA---ATCCCCTATATTC--TTTCT-CGATTTCTAGAGATCATGGACTTGTTTCCGTCGCAACAGTGGTCTGATATATCCAACAGG
droKik1 scf7180000302366:1226948-1227189 - TACCC---------T-A-----------------------CCTACATTAATCTTATA--TT--TTTCTT----------ACTTAAGTTGTATGTTCCAGTGAAA--------------CGTAGCGAATAAAT--A-TCC--CCACTAGAACAGCATTTTAA--CCTTTATTTTTGTTT-----GAG----------------GG---GTGGTTCCCT-AT---AGA----CTGTAACCTGTA----AG--------AGGCAGACA----------------------------------CTGACACT--AACTAACGCTGGCAT--TTT-TATT-A-CATTTTAGCCATAATGGACTATTTTCCGACTCAACAGTGGTCCGACGTTTCAAACTTG
droFic1 scf7180000454044:1130211-1130458 - ATAAC-------A-TAAA---C--TG-ATACTTTGCGGT-TTTTATTTAATCCTATA--TT-TTTTCCT----------AAATAAGATCTATGTTCCAGTGCAA-------------CAATCGTGAATAAAG--T-TCC--CCACTAGAACACCACTGGCT--CTTTT----TTATTC-----AAA----------------GT---GTGGTTTCCG-AT---ATG----TTCA---ACATGC--------------ACTTCAAA----------------------------------------CACACACTAAAGTACACAT--TTC-TATT-A-C-GTTTAGCAATTATGGACTATTTTCCGTTTCAACCATGGAATGATCGGTTCAACCTA
droEle1 scf7180000491107:94556-94811 + AACCT---------T-AA---A--TA-TTATTTTGTCGT-TTAAAATTGCTAATATA--TT-TTTTCGT----------ACATAAGT-AAAAGTTCCAGTGAAA-------------TAGTCGTAA-TAAAT-GT-TCT--CTACTAGAACTAAAATTTCC--GTTTT-----AATTTTACCTTAA----------------GA---GTGGTTCCCG-GT---AGG----CTCT---CTATGTGAAA-----G---TAAGACAAG----------------------------------------CAGAGACTAAAGTTTAACT--ATC-TATT-A-CGTTTTAGCGACTTTGGACTTATTTCCGTCTCAACAACGGTCTGATATATCGAACTCA
droRho1 scf7180000777827:15861-16116 - AACCC---------A-AA---C--AA-TTAATTTGTCTTTTTTACATTAATAATATA--TT--TTTCGT----------AAATAAGTAG-AAGTTCCAGTAAAA-------------CAGTCGTGAATAAAT-GT-TCC--CTACTAGAACTATACTTT-T--CTTTT-----TATTTTATTTGAA----------------GA---GTGGTTCCCG-GT---AGG----CTTT---CACATAGATA-----T---AAAGACAAG----------------------------------------GAGACACTAAATTTTAAAT--ATT-TATT-A-CTTTTTAGAAACTATGGATTACTTTCCGTCCCAACAATGGTCTGATATATCCAACTTA
droBia1 scf7180000301754:6053367-6053629 - AACAA---------A-AA---C--CA-TTAAGTTGTCCC-TTTTCTATATTCCTAAATACG--TTACACAAATAATAATAAATAAGTTGTATGTTTCAGTTAAA-------------AAGTTGTGAATAAAT--T-TC---CCACTTTAACTGCACTCTCT--CTTCG-----TATTTAATTTAAA----------------AA---TTGGTTCCCG-AT---AGA----CTAT---CTAAGCGACT-----G---AACGACAAA------------------------------------------GGCACTAAGTTGTA--C--TCT-TTTT-A-TGTTTTAGCAATTTTTGACTACTTTCCGCCTCAAGAATGGGCTGACATATCCAATCGA
droTak1 scf7180000415805:108861-109115 + CAATA---------CAAA---C--AA-TTA-TTTGTCC--TTTACTATAATCTTATA--TT-TTTTCGT----------AAATAAGTTGTATGTCCCAGTGAAA-------------CAGTCGTGAATAAAT--T-TCC--CCACTATAACTACACTGGCT--CCTTT-----TATTTAGTTCAAA----------------GA---GTGGTTCCCG-AT---AGA----CTCT---TCATGTGAAT-----A---AAAGACAAA----------------------------------------A-AACGCTAAAATTGACAT--TCA-TTTT-A-CCTTCTAGAAATTATTGATTACTTTCCGTCTCAACAATGGTCTGATATATCCAATCTA
droEug1 scf7180000409464:1251564-1251814 + CAGCA---------C-AA---G--AA-CTA-TTTGTCGT-TTAACATTAATCATATA--CT-TCTTCTT----------AAATAAGCTGTATGTTCCAGAGAAA-------------CAGTCCTGAATAAAC--T-TCC--CCATTCTAACCCCACTGCTT--ATTTT-----TATTTACCTTGAA----------------GA---GTGGTTCCCG-AT---AGA----CTCT---CTGCCCGAAA-----G---AAAGACA---------------------------------------------GCACTAAATCTCAAAT--TCG-TTTT-A-CGTTTTAGAATCTATGGACTACTTTCCCACTCAACAATGGTCCGATATCTGCAACCTG
dm3 chr2R:21072506-21072743 - AAAAA---------T---------AA-CTATTTTTTTGT-TTTACATTTATGTTTTA--TT-TTTTCGT----------AATTAA-TGATATGCTTTAATAAA--------------CAACCCTACTTCAAT--T-TCC--TAAATATAACTAATATGTCT--ATTTT-----GATTTGA----------------------TG---GTGGTTCCCG-AT---AGG----CTTT---CTTTA----A--------------CAAA----------------------------------------CTTATGCAAATTTATCATTTTG--TTGTT-CTGTTTTTAGGAAATATGGATTACTTTCCGTCTCCGCAATGGTCTGAAATATCCAATCTA
droSim2 2r:21518966-21519207 - dsi_908 AAAAA---------C---------AA-CTATTTTTTCGT-TTTACATTTATCTTTTA--TT--TTTCGT----------AATTAA-TGATATGATTTAATAAA--------------TAATCCTACATCAAT--T-TCC--TAAATATAACTAATGTGGCT--ATTTT-----TATTTGA----------------------TG---GTGGTTCC-G-AT---AGG----CTTT---CTATA----AA--------AAAGACAAA----------------------------------------CTTATACCAATTTCTCATTTTG--TTGTT-CTGTTTTTAGGAAATATGGATTACTTTCCGTCTCCGCAATGGTCTGAAATATCCAATCTA
droSec2 scaffold_23:911690-911931 - AAAAA---------C---------AA-CTATTTTTTCGT-TTTACAGTTATCTTTTA--TT--TTTCGT----------AATTAA-TGATATGATTTAATAAA--------------TAATCCTACATCAAT--T-TCC--TAAATATAACTAATCTGGCT--ATTTT-----TATTTGA----------------------TG---GTGGTTCC-G-AT---AGG----CTTT---CTATA----AA--------AAAGACAAA----------------------------------------CTTATACCAATTTCTCATTTTG--TTGTT-CTGTTTTTAGGAAATATGGATTACTTTCCGTCTCCGCAATGGTCTGAAATATCCAATCTA
droYak3 2R:21026789-21027035 - AAC---------------------AA-CTATTTTTTCGA-TTTACATTAATCTTTTA--TT-TTTTCGT----------ATTTAA-TGATATGTTTCAATAAA--------------CAGTCCTAAATAAAT--T-TCC--TGAATATAATTATTCTGGCT--ATTTT-----TATTTGATATGTT----------------TG---GTGGTTCCCG-AT---AGG----CGCT---GCTTA----AG--------AAAGACAAA----------------------------------------CTTAAACTAATTTAACAACTTT--TCGTT-TGGTTTTTAGCAATTATGGATTACTTTCCGTCCCCGCAATGGTCTGAAATATCCAATCTA
droEre2 scaffold_4845:22475113-22475340 - AAC---------------------AA-CTATTTTTTCGT-TTTGCATTAATCTTTTA--TT-TTTTCGT----------AATTAA---------------------------------TGTCCTAAATAAAT--G-TCC--TAAATATAAATATTCTGGCT--ATT-T-----TATTTGATTTGTT----------------TG---GTGGTTCCCG-AT---AGG----CTCT---GTTTA----AG--------AGAGACAAA----------------------------------------CTTATAGTAATTTTACAATTTT--ATGTT-CTGTTTATAGCAATTATGGATTACTTTCCGTCTCCGAAACGGTCTGAAATATCCAATCTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AACCG---------T-GGGGTT--AA-TTATTGTGTCGT-TTTACATTAATCCTATA--CG--TTTTTTAA--------ACATTAGTTGTATGTTCCAGTGAAA-------------TA-----GAATAAAG--T-CCC--CAACTAGAACTATGCACACC--CCTTT-----TATTT-----CAA----------------CA---GTGGTTCCCG-AT---AGTTAGGCCCC---TTACA----GG-------------CA------------------------------------CCGAAACTAATCAAAGTTTATTGTT-CT--TTGTT-TCATTTTCAGCGATAATGGACTTCTTTCCGTTTCAGCAATGGTCCGATGTTTCCAATTTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................CATTAGTTGTATGTTCCAGTGAA....................................................................................................................................................................................................................................................................................................2312.0020200000000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGAACTA..................................................................................................................................................................................................................................................2212.0020110000000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGAAAA...................................................................................................................................................................................................................................................2112.0020100100000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGAACA...................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGAACTAAAA...............................................................................................................................................................................................................................................2511.0010010000000
................................................................................CATTAGTTGTATGTTCCAGT.......................................................................................................................................................................................................................................................................................................2011.0010000100000
.....................................GT-TTTACATTAATCCTATA--CG--TT..........................................................................................................................................................................................................................................................................................................................................2311.0010100000000
................................................................................CATTAGTTGTATGTTCCAGTGA.....................................................................................................................................................................................................................................................................................................2211.0010100000000
...................................................................................TAGTTGTATGTTCCAGTGAAA-------------TA-----GA.............................................................................................................................................................................................................................................................................2511.0010100000000
................................................AATCCTATA--CG--TTTTTTAA--------ACA.........................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................AA-TTATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................TTAGTTGTATGTTCCAGTGAAA-------------T.....................................................................................................................................................................................................................................................................................2311.0010100000000
.............................ATTGTGTCGT-TTTACATTAATCCTG....................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.....................................GT-TTTACATTAATCCTATA--CG--T...........................................................................................................................................................................................................................................................................................................................................2211.0010010000000
............................................................................................................................GAATAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................GAATAAAG--T-CCC--CAACTAGA......................................................................................................................................................................................................................................................2011.0010010000000
........................AA-TTATTGTGTCGT-TTTAC..............................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
................................................................................CATTAGTTGTATGTTCCAGC.......................................................................................................................................................................................................................................................................................................2011.0010010000000
....................................................................................AGTTGTATGTTCCAGTGAAA-------------TA-----GA.............................................................................................................................................................................................................................................................................2411.0010010000000
.......................................................................................................A-------------TA-----GAATAAAG--T-CCC--CAACTAGAACC...................................................................................................................................................................................................................................................2611.0010010000000
...................GTT--AA-TTATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGAA.....................................................................................................................................................................................................................................................1911.0010100000000
.....................................................................................GTTGTATGTTCCAGTGAAA-------------T.....................................................................................................................................................................................................................................................................................2011.0010100000000
.....................................................................................................AAA-------------TA-----GAATAAAG--T-CCC--CAACTA........................................................................................................................................................................................................................................................2311.0010010000000
...................GTT--AA-TTATTGTGTCGT-TTTAC..............................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
........................................TTTACATTAATCCTATA--CG--TTTTTTAA--------AC..........................................................................................................................................................................................................................................................................................................................2911.0010010000000
...............................................................................................................................TAAAG--T-CCC--CAACTAGAA.....................................................................................................................................................................................................................................................1811.0010100000000
..................................GTCGT-TTTACATTAATCCT.....................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..............................................................................................TCCAGTGAAA-------------TA-----GAATAAAG--.....................................................................................................................................................................................................................................................................2011.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................TTCAGCAATGGTCCGATGTTTCCAATT..2711.0010100000000
......................................................................................................AA-------------TA-----GAATAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................2711.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................GACTTCTTTCCGTTTCAGCAATGGTCC...............2711.0010100000000
......................................................................................................................A-----GAATAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................2411.0010000100000
...............................................................................................................................TAAAG--T-CCC--CAACTAGAAC....................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................GAAA-------------TA-----GAATAAAG--T-CCC--CAA...........................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................TGTATGTTCCAGTGAAA-------------TA-----GA.............................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................A-------------TA-----GAATAAAG--T-CCC--CAACTAGAA.....................................................................................................................................................................................................................................................2411.0010010000000
.................................................................................................AGTGAAA-------------TA-----GAATAAAG--T-CCC--CAACT.........................................................................................................................................................................................................................................................2611.0010100000000
..................................GTCGT-TTTACATTAATCCTATA--CG--TT..........................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGA......................................................................................................................................................................................................................................................1811.0010100000000
.................................................ATCCTATA--CG--TTTTTTAA--------ACATT.......................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................................................................................................A-------------TA-----GAATAAAG--T-CCC--CAACT.........................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AACCG---------T-GGGGTT--AA-TTATTGTGTCGT-TTTACATTAATCCTATA--CG--TTTTTTAA--------ACATTAGTTGTATGTTCCAGTGAAA-------------TA-----GAATAAAG--T-CCC--CAACTAGAACTATGCACACC--CCTTT-----TATTT-----CAA----------------CA---GTGGTTCCCG-AT---AGTTAGGCCCC---TTACA----GG-------------CA------------------------------------CCGAAACTAATCAAAGTTTATTGTT-CT--TTGTT-TCATTTTCAGCGATAATGGACTTCTTTCCGTTTCAGCAATGGTCCGATGTTTCCAATTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................ATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................18114.00141400000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................21111.00111100000
........................AA-TTATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................2219.009900000
...................GTT--AA-TTATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................2518.008710000
..................................GTCGT-TTTACATTAATCCT.....................................................................................................................................................................................................................................................................................................................................................1917.007601000
...................GTT--AA-TTATTGTGTCGT-TTTACAT............................................................................................................................................................................................................................................................................................................................................................2413.003300000
............................TATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................1913.003300000
.......................................................................................................A-------------TA-----GAATAAAG--T-CCC--CAACT.........................................................................................................................................................................................................................................................2012.002200000
.........................A-TTATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................2112.002200000
.......................................................................................................A-------------TA-----GAATAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................2612.002200000
.......................................................................................................A-------------TA-----GAATAAAG--T-CCC--CAACC.........................................................................................................................................................................................................................................................2011.001100000
......................................T-TTTACATTAATCCTATA--................................................................................................................................................................................................................................................................................................................................................1811.001010000
.....................................GT-TTTACATTAATCCTATA--CG--TTT.........................................................................................................................................................................................................................................................................................................................................2411.001010000
...............................................................................................................................TAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................2011.001100000
...........................................................................................TGTTCCAGTGAAA-------------TA-----GAATAAAG--T-CCC--T.............................................................................................................................................................................................................................................................2811.001100000
.............................ATTGTGTCGT-TTTACATTAATCCT.....................................................................................................................................................................................................................................................................................................................................................2411.001010000
......................................................................................................................A-----GAATAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................AAG--T-CCC--CAACTAGAACA...................................................................................................................................................................................................................................................1811.001010000
.........................A-TTATTGTGTCGT-TTTAC..............................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................................................................................................AA-------------TA-----GAATAAAG--T-CCC--CAACTAGAACT...................................................................................................................................................................................................................................................2711.001100000
........................AA-TTATTGTGTCGT-TTTAC..............................................................................................................................................................................................................................................................................................................................................................1911.001001000
.......................................................................................................A-------------TA-----GAATAAAG--T-CCC--CAACTAGAACTA..................................................................................................................................................................................................................................................2711.001010000
.................................................................................ATTAGTTGTATGTTCCAGT.......................................................................................................................................................................................................................................................................................................1911.001010000
....................TT--AA-TTATTGTGTCGT-TTTACA.............................................................................................................................................................................................................................................................................................................................................................2211.001001000
.........................A-TTATTGTGTCGT-TTTACATTA..........................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................T--AA-TTATTGTGTCGT-TTTACATT...........................................................................................................................................................................................................................................................................................................................................................2311.001100000
..............................................................................................................................ATAAAG--T-CCC--CAACTAGTT.....................................................................................................................................................................................................................................................1930.331001000
droWil2
TTCCG---------C-CAC-----------ATTTGTCGT-TGTAAATTATTATTATA--GAATTTTTCT----------ATTTAAGTTTTAAGTTCCAGTGAAA-----------TATAGTCGCGAATAAAAAGT-CCCCCACACTAGAACTATATTGATATTGA-TT-TATTTATTT-----CTC----------------AA---GTGGTTCCCA-GT---AGT----TA-A---AGTTA----AC--------ACACAAGAACT-TTTAAAATC--------A-------------T--------------CTTTACTAAGGTCT-TAATT-T-CATTTCAGCCATCATGGACTATTTTCCATTTCCTCAATGGGGTGACATATCTAATAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................TTAAGTTTTAAGTTCCAGTGAA....................................................................................................................................................................................................................................................................................................2212.00200020
............................................................................................GTTCCAGTGAAA-----------TATAGTCGCGA.............................................................................................................................................................................................................................................................................2312.00202000
.......................................................................................................A-----------TATAGTCGCGAATAAAAAGT-CCCCCACA...........................................................................................................................................................................................................................................................2911.00110000
..................................................................TCT----------ATTTAAGTTTTAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................CGCGAATAAAAAGT-CCCCCAC............................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................AGT-CCCCCACACTAGAACTAA.................................................................................................................................................................................................................................................2111.00101000
........................................................................................TTAAGTTCCAGTGAAA-----------TATAGTC.................................................................................................................................................................................................................................................................................2311.00100010
............................................................AATTTTTCT----------ATTTAAGTTTTAAGT.............................................................................................................................................................................................................................................................................................................2411.00101000
..........................................................................................AAGTTCCAGTGAAA-----------TATAGTC.................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................TAAGTTCCAGTGAAA-----------TATAGTCG................................................................................................................................................................................................................................................................................2311.00100100
..............................................................................................TCCAGTGAAA-----------TATAGTCGC...............................................................................................................................................................................................................................................................................1911.00101000
...............................................................................ATTTAAGTTTTAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2111.00100100
.......................................................................................................A-----------TATAGTCGCGAATAAAAAGT-CCCCCAC............................................................................................................................................................................................................................................................2811.00101000
......................................................................................................AA-----------TATAGTCGCGAATAAAAAGT-CCCC...............................................................................................................................................................................................................................................................2611.00100010
...............................................................................ATTTAAGTTTTAAGTTCCAGTGAA....................................................................................................................................................................................................................................................................................................2411.00100010
.......................................................................................................................GTCGCGAATAAAAAGT-CCCCCACA...........................................................................................................................................................................................................................................................2411.00101000
..............................................................................................................................ATAAAAAGT-CCCCCACACTAG.......................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................ATAGTCGCGAATAAAAAGT-CCC................................................................................................................................................................................................................................................................2211.00100100
.............................................................................................................................AATAAAAAGT-CCCCCACACTAGA......................................................................................................................................................................................................................................................2311.00101000
..........................................................................................AAGTTCCAGTGAAA-----------TATAGTCGCGA.............................................................................................................................................................................................................................................................................2511.00101000
...CG---------C-CAC-----------ATTTGTCGT-TGTAA..............................................................................................................................................................................................................................................................................................................................................................2011.00100010
......................................................................................................AA-----------TATAGTCGCGAATAAAAA......................................................................................................................................................................................................................................................................2011.00100100
.........................................................................................................................CGCGAATAAAAAGT-CCCCCACACTAGA......................................................................................................................................................................................................................................................2711.00100010
..............................ATTTGTCGT-TGTAAATTATTATT.....................................................................................................................................................................................................................................................................................................................................................2311.00110000
..................................................................................................GTGAAA-----------TATAGTCGCGAATAAAAA......................................................................................................................................................................................................................................................................2411.00100010
.....................................................................................GTTTTAAGTTCCAGTGAAA-----------TATAGTCGC...............................................................................................................................................................................................................................................................................2811.00100100
.......................................................................................................A-----------TATAGTCGCGAATAAAA.......................................................................................................................................................................................................................................................................1811.00100010
...............................................................................ATTTAAGTTTTAAGTTCCA.........................................................................................................................................................................................................................................................................................................1911.00100010
................CAC-----------ATTTGTCGT-TGTAAAT............................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................GTCGCGAATAAAAAGT-CCCCCAC............................................................................................................................................................................................................................................................2311.00100100
droVir3
AGCTT---------C-CT-TCC--AA-ATA-TTTGTCGT-CTTAAATTATTATTATA--AT--TTTTTT----------ATTTAAGTTGTAAGTTCCAGTGAAA-------------AAGTCGCAAATAAAC--T--CC--CCACTAGAACTAACCAGCCT--GTTTT-----TATTTGTGCTTAG-------ACTCTTCCCAA---GTGGTTCCTC-GT---AGG----CTAA---CTATCCGATC-----T---TATTTC----------------------CATTTTCAAATACAT---------------TCCTCTCAC---T--TACTC-TCCTTTGCAGCCATCATGGACTACTTTCAGCGCGATCAATCGGCCGATATATCCAATATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................AGTCGCAAATAAAC--T--CC--CCACT.........................................................................................................................................................................................................................................................2213.003002100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................ATAAAC--T--CC--CCACTAGAACTA..................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................AAATAAAC--T--CC--CCACTAGAACTAAA................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................TAAGTTCCAGTGAAA-------------AAGTCGC...............................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................GAAA-------------AAGTCGCAAATAAAC--T--CC--CCACC.........................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TAAAC--T--CC--CCACTAGAACTA..................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................T--TTTTTT----------ATTTAAGTTGTAAGT.............................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................T-TCC--AA-ATA-TTTGTCGT-CTTAA..............................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AAGTCGCAAATAAAC--T--CC--CCACT.........................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................TT----------ATTTAAGTTGTAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................AA-ATA-TTTGTCGT-CTTAAATT...........................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................................CGT-CTTAAATTATTATTATA--................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAA-------------AAGTCGCAAATAAAC--T--CC--CCACTAT.......................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GTCGCAAATAAAC--T--CC--CCACTAGAACTA..................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGTAAGTTCCAGTGAAA-------------AAGT..................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................GCAAATAAAC--T--CC--CCACTA........................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................TGTAAGTTCCAGTGAAA-------------AAGTCGCA..............................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.....................C--AA-ATA-TTTGTCGT-CTTAAAT............................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................GAAA-------------AAGTCGCAAATAAAC--T--CC--CCA...........................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................AAATAAAC--T--CC--CCACTAGAAC....................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................AATAAAC--T--CC--CCACTAGAACTAAA................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
..........................................................................................AAGTTCCAGTGAAA-------------AAGTCGC...............................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................TTTAAGTTGTAAGTTCCAGTGAAA-------------AA....................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................AAGTTGTAAGTTCCAGTGAA....................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................GTCGCAAATAAAC--T--CC--CCACT.........................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................GCAAATAAAC--T--CC--CCACTAGAACT...................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
................................................................TTTTT----------ATTTAAGTTGTAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................ATTTAAGTTGTAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................AGCCT--GTTTT-----TATTTGTGCT....................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...........................................................AT--TTTTTT----------ATTTAAGTTGTAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CGCAAATAAAC--T--CC--CCACTAG.......................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................AGTCGCAAATAAAC--T--CC--CCACTAGAA.....................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GTCGCAAATAAAC--T--CC--CCA...........................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................GTTCCAGTGAAA-------------AAGTCGCA..............................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................GTCGCAAATAAAC--T--CC--CCACTAGAACTT..................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................ATAAAC--T--CC--CCACTAGAACT...................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................GTTGTAAGTTCCAGTGAAA-------------AAGT..................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
................................................................................TTTAAGTTGTAAGTTCCAGTGAAA-------------......................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................TAAGTTGTAAGTTCCAGTGAA....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
................................................................TTTTT----------ATTTAAGTTGTAAGTTCC..........................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................AAGTTGTAAGTTCCAGTGAAA-------------AAG...................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GTCGCAAATAAAC--T--CC--CCACTAGAAC....................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AAAC--T--CC--CCACTAGAACTATT................................................................................................................................................................................................................................................2120.501001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATGTATGGCCCA--C-CATAAC-----------CC-----T--CCCTTATAATCATA--AT-TTTTTTT----------ATTTAAGTTATAAGTTCCAGTGACA-------------AATTCGCAAATAAAG--TCCAC--CCACTAGAACTAAAGAGCCT--GTTTT-----AATTTCCGTTTTA---G---ACGTATCCCAA---GTGGTTCTATGCTTATTGA----CTAT---CTTAT----C-----T---GAATTA----------------------TATTATTTATCATAT---------TCA-----CCTATA-------TTATA-T-TGTTATAGCAATCATGGACAGCTTTCAGTTCGAACAGTCGTCCGATATCTCCAATATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................GACA-------------AATTCGCAAATAAAG--T....................................................................................................................................................................................................................................................................2012.002000002
................................................................................................................................AAAG--TCCAC--CCACTAGAACT...................................................................................................................................................................................................................................................2012.002200000
..............................................................................................................................ATAAAG--TCCAC--CCACTAGAACTAAA................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................ATTCGCAAATAAAG--TCCAC--C.............................................................................................................................................................................................................................................................2011.001100000
..........................................................................................AAGTTCCAGTGACA-------------AATTCGCA..............................................................................................................................................................................................................................................................................2211.001100000
..........................................................................................................................GCAAATAAAG--TCCAC--CCACTAGAACTAAA................................................................................................................................................................................................................................................2911.001100000
....................................................................T----------ATTTAAGTTATAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2211.001100000
......................................................................................................................ATTCGCAAATAAAG--TCCAC--CC............................................................................................................................................................................................................................................................2111.001100000
........................................................................................ATAAGTTCCAGTGACA-------------AATT..................................................................................................................................................................................................................................................................................2011.001100000
..................................................................TTT----------ATTTAAGTTATAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2411.001100000
................CATAAC-----------CC-----T--CCCTTATAATCATA--................................................................................................................................................................................................................................................................................................................................................2311.001000010
...................AAC-----------CC-----T--CCCTTATAATCATA--................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................AATAAAG--TCCAC--CCACTAG.......................................................................................................................................................................................................................................................1911.001100000
...............................................................................................................................TAAAG--TCCAC--CCACTAGA......................................................................................................................................................................................................................................................1811.001100000
............................................................................................GTTCCAGTGACA-------------AATTCGCA..............................................................................................................................................................................................................................................................................2011.001100000
...............................................................................ATTTAAGTTATAAGTTCCAGTGACA-------------......................................................................................................................................................................................................................................................................................2511.001100000
droGri2
CTCCA---------C-CACATTCCACACACATTTGTCGT-CTTAAATTATTATTATA--AT-GTTTTTT----------ATTTAAGTTGTAAGTTCCAGTGCAAAATGAAGAAAATTAAGTTGCAAATAAAT----TCC--CCACTAGAACTAAACTGCAT--GTTTT-----TGTTTCTTATTATTTACTACTATCTTCCCAA---GTGGTTCCAT-AT---TGAATAACCTT---ATATT----GT--------ACATATGTATA-TATATATCT--------ATCTTTATCTATAT-------CTGTATCAATATCAGTATTAA--ACTTTCTGTTTTATAGAATATATGGACTACTTTCCATTCGAGCATTCGTCGGATATATCCAATTTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................GTTCCAGTGCAAAATGAAGA...........................................................................................................................................................................................................................................................................................2011.00110
......................CCACACACATTTGTCGT-CTT................................................................................................................................................................................................................................................................................................................................................................2011.00110
...................................................................TT----------ATTTAAGTTGTAAGTTCCAGT.......................................................................................................................................................................................................................................................................................................2311.00101
..................CATTCCACACACATTTGTCGT-CTTA...............................................................................................................................................................................................................................................................................................................................................................2511.00101
..................................................................TTT----------ATTTAAGTTGTAAGTTCCAGTGC.....................................................................................................................................................................................................................................................................................................2611.00110
.....................TCCACACACATTTGTCGT-CTTAAA.............................................................................................................................................................................................................................................................................................................................................................2411.00110
droAna3
CAACC---------A-AA-C-C-CAT-TTAATTTGTCGT-TCCACCTTATTCTTTAA--CC--TTTTTT----------ACATAAGTTGTATGTTCCAGTGAT--------------GAGTCGCGAATAAAT--T-TTC--CCACTAGAACTGCACTTTCT--CCTTT-----TATTC-----AAA----------------GAGTGGTGGTTCCCG-CT---TGTTAATA-CT---CTTCC-----------CCTTAGTACCCG----C------TAATATTAGT-----------------ATCCCTTA-----CTAATATT-CT--CTTGT-CGCTTTCTAGAGATCATGGACTTGTTTCCGTCCCAGCAATGGTCTGATATATCCAACAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................TTTTT----------ACATAAGTTGTATGTTCC..........................................................................................................................................................................................................................................................................................................2312.002020000
..............................................................................................................................ATAAAT--T-TTC--CCACTAGAACTGC.................................................................................................................................................................................................................................................2312.002020000
.......................................................AA--CC--TTTTTT----------ACATAAGTTGTATGTTCC..........................................................................................................................................................................................................................................................................................................2812.002110000
..........................................................................................ATGTTCCAGTGAT--------------GAGTCGCGA.............................................................................................................................................................................................................................................................................2212.002011000
............................................................................................GTTCCAGTGAT--------------GAGTCGCGA.............................................................................................................................................................................................................................................................................2012.002010010
........................AT-TTAATTTGTCGT-TCCACCTTATT........................................................................................................................................................................................................................................................................................................................................................2511.001010000
...................................................................................AAGTTGTATGTTCCAGTG......................................................................................................................................................................................................................................................................................................1811.001010000
................................................ATTCTTTAA--CC--TTTTTT----------ACATA.......................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................ATAAAT--T-TTC--CCACTAGAACTGCACC..............................................................................................................................................................................................................................................2611.001010000
................................................................................CATAAGTTGTATGTTCCAGTGAT--------------GAGTC.................................................................................................................................................................................................................................................................................2811.001010000
....................................................................................................GAT--------------GAGTCGCGAATAAAT--T-TTC--CCACC.........................................................................................................................................................................................................................................................2711.001010000
.............................AATTTGTCGT-TCCACCTTATT........................................................................................................................................................................................................................................................................................................................................................2111.001010000
.............................................................................................................................AATAAAT--T-TTC--CCACTAGAACTGC.................................................................................................................................................................................................................................................2411.001001000
........................................................................................GTATGTTCCAGTGAT--------------GAGT..................................................................................................................................................................................................................................................................................1911.001010000
.....................................................................................................................GAGTCGCGAATAAAT--T-TTC--CCA...........................................................................................................................................................................................................................................................2211.001010000
..........................................CACCTTATTCTTTAA--CC--TTT.........................................................................................................................................................................................................................................................................................................................................2011.001010000
..............A-AA-C-C-CAT-TTAATTTGTCGT-TCCACCTT...........................................................................................................................................................................................................................................................................................................................................................2811.001010000
...............................................................................ACATAAGTTGTATGTTCCAGTGAT--------------......................................................................................................................................................................................................................................................................................2411.001000010
.................................................................................................................................AAT--T-TTC--CCACTAGAACTGC.................................................................................................................................................................................................................................................2011.001001000
........................................................................................GTATGTTCCAGTGAT--------------GAGTCGCGA.............................................................................................................................................................................................................................................................................2411.001010000
................................................................TTTTT----------ACATAAGTTGTATGTTCCAGTGAT--------------......................................................................................................................................................................................................................................................................................2911.001010000
.......................................................................................TGTATGTTCCAGTGAT--------------GAGTCGCGA.............................................................................................................................................................................................................................................................................2511.001000010
...................C-C-CAT-TTAATTTGTCGT-TCC................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..................................................................................TAAGTTGTATGTTCCAGTGAT--------------GA....................................................................................................................................................................................................................................................................................2311.001001000
....................................................................T----------ACATAAGTTGTATGTTCCAGT.......................................................................................................................................................................................................................................................................................................2211.001010000
..............A-AA-C-C-CAT-TTAATTTGTCGT-TCC................................................................................................................................................................................................................................................................................................................................................................2311.001010000
......................................................................................................................AGTCGCGAATAAAT--T-TTC--CCACTAGAACT...................................................................................................................................................................................................................................................2911.001010000
..............................................................................................................................ATAAAT--T-TTC--CCACTAGAACTGCA................................................................................................................................................................................................................................................2411.001100000
droBip1
AACCA------ACCA-AA---CCCAT-TTAATTTGTCGT-TTCACCTTATTCTTATA--AC-CTTTCTT----------ACATAAGTTGTATGTTCCAGTGAT--------------GAGTCGCGAATAAAT--T-TTC--CCACTAGAACTGCACG-TTT--CCTTT-----TATTT-----GAA----------------GAGTGGTGGTTCCCG-CT---T---------T---CTATT-GATC-TTAT-CCTTAAGACTCCCTCTC------TAGAATAAGA-----------------ATCCCATA---ATCCCCTATATTC--TTTCT-CGATTTCTAGAGATCATGGACTTGTTTCCGTCGCAACAGTGGTCTGATATATCCAACAGGSizeHit CountTotal NormTotal
No Reads
droKik1
TACCC---------T-A-----------------------CCTACATTAATCTTATA--TT--TTTCTT----------ACTTAAGTTGTATGTTCCAGTGAAA--------------CGTAGCGAATAAAT--A-TCC--CCACTAGAACAGCATTTTAA--CCTTTATTTTTGTTT-----GAG----------------GG---GTGGTTCCCT-AT---AGA----CTGTAACCTGTA----AG--------AGGCAGACA----------------------------------CTGACACT--AACTAACGCTGGCAT--TTT-TATT-A-CATTTTAGCCATAATGGACTATTTTCCGACTCAACAGTGGTCCGACGTTTCAAACTTGSizeHit CountTotal NormTotal
No Reads
droFic1
ATAAC-------A-TAAA---C--TG-ATACTTTGCGGT-TTTTATTTAATCCTATA--TT-TTTTCCT----------AAATAAGATCTATGTTCCAGTGCAA-------------CAATCGTGAATAAAG--T-TCC--CCACTAGAACACCACTGGCT--CTTTT----TTATTC-----AAA----------------GT---GTGGTTTCCG-AT---ATG----TTCA---ACATGC--------------ACTTCAAA----------------------------------------CACACACTAAAGTACACAT--TTC-TATT-A-C-GTTTAGCAATTATGGACTATTTTCCGTTTCAACCATGGAATGATCGGTTCAACCTASizeHit CountTotal NormTotal
No Reads
droEle1
AACCT---------T-AA---A--TA-TTATTTTGTCGT-TTAAAATTGCTAATATA--TT-TTTTCGT----------ACATAAGT-AAAAGTTCCAGTGAAA-------------TAGTCGTAA-TAAAT-GT-TCT--CTACTAGAACTAAAATTTCC--GTTTT-----AATTTTACCTTAA----------------GA---GTGGTTCCCG-GT---AGG----CTCT---CTATGTGAAA-----G---TAAGACAAG----------------------------------------CAGAGACTAAAGTTTAACT--ATC-TATT-A-CGTTTTAGCGACTTTGGACTTATTTCCGTCTCAACAACGGTCTGATATATCGAACTCASizeHit CountTotal NormTotal
No Reads
droRho1
AACCC---------A-AA---C--AA-TTAATTTGTCTTTTTTACATTAATAATATA--TT--TTTCGT----------AAATAAGTAG-AAGTTCCAGTAAAA-------------CAGTCGTGAATAAAT-GT-TCC--CTACTAGAACTATACTTT-T--CTTTT-----TATTTTATTTGAA----------------GA---GTGGTTCCCG-GT---AGG----CTTT---CACATAGATA-----T---AAAGACAAG----------------------------------------GAGACACTAAATTTTAAAT--ATT-TATT-A-CTTTTTAGAAACTATGGATTACTTTCCGTCCCAACAATGGTCTGATATATCCAACTTASizeHit CountTotal NormTotal
No Reads
droBia1
AACAA---------A-AA---C--CA-TTAAGTTGTCCC-TTTTCTATATTCCTAAATACG--TTACACAAATAATAATAAATAAGTTGTATGTTTCAGTTAAA-------------AAGTTGTGAATAAAT--T-TC---CCACTTTAACTGCACTCTCT--CTTCG-----TATTTAATTTAAA----------------AA---TTGGTTCCCG-AT---AGA----CTAT---CTAAGCGACT-----G---AACGACAAA------------------------------------------GGCACTAAGTTGTA--C--TCT-TTTT-A-TGTTTTAGCAATTTTTGACTACTTTCCGCCTCAAGAATGGGCTGACATATCCAATCGASizeHit CountTotal NormTotal
No Reads
droTak1
CAATA---------CAAA---C--AA-TTA-TTTGTCC--TTTACTATAATCTTATA--TT-TTTTCGT----------AAATAAGTTGTATGTCCCAGTGAAA-------------CAGTCGTGAATAAAT--T-TCC--CCACTATAACTACACTGGCT--CCTTT-----TATTTAGTTCAAA----------------GA---GTGGTTCCCG-AT---AGA----CTCT---TCATGTGAAT-----A---AAAGACAAA----------------------------------------A-AACGCTAAAATTGACAT--TCA-TTTT-A-CCTTCTAGAAATTATTGATTACTTTCCGTCTCAACAATGGTCTGATATATCCAATCTASizeHit CountTotal NormTotal
No Reads
droEug1
CAGCA---------C-AA---G--AA-CTA-TTTGTCGT-TTAACATTAATCATATA--CT-TCTTCTT----------AAATAAGCTGTATGTTCCAGAGAAA-------------CAGTCCTGAATAAAC--T-TCC--CCATTCTAACCCCACTGCTT--ATTTT-----TATTTACCTTGAA----------------GA---GTGGTTCCCG-AT---AGA----CTCT---CTGCCCGAAA-----G---AAAGACA---------------------------------------------GCACTAAATCTCAAAT--TCG-TTTT-A-CGTTTTAGAATCTATGGACTACTTTCCCACTCAACAATGGTCCGATATCTGCAACCTGSizeHit CountTotal NormTotal
No Reads
dm3
AAAAA---------T---------AA-CTATTTTTTTGT-TTTACATTTATGTTTTA--TT-TTTTCGT----------AATTAA-TGATATGCTTTAATAAA--------------CAACCCTACTTCAAT--T-TCC--TAAATATAACTAATATGTCT--ATTTT-----GATTTGA----------------------TG---GTGGTTCCCG-AT---AGG----CTTT---CTTTA----A--------------CAAA----------------------------------------CTTATGCAAATTTATCATTTTG--TTGTT-CTGTTTTTAGGAAATATGGATTACTTTCCGTCTCCGCAATGGTCTGAAATATCCAATCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................AACCCTACTTCAAT--T-TCC--..............................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................ATTAA-TGATATGCTTTAA........................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................A--TT-TTTTCGT----------AATTAA-TGAT.................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CGT----------AATTAA-TGATATGCTTTA.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................T-TTTTCGT----------AATTAA-TGATATGCTTTA.........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TGATATGCTTTAATAAA--------------CAACC.................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ATAAA--------------CAACCCTACTTCAAT--T-TCC--..............................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GT----------AATTAA-TGATATGCTTT..........................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATGTCT--ATTTT-----GATTTGA----------------------TG---............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................TTTTA--TT-TTTTCGT----------AATTAA-TGATA................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................TG--TTGTT-CTGTTTTTAGGA................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................T----------AATTAA-TGATATGCTTTAATAAA--------------C.....................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GT----------AATTAA-TGATATGCTTTAATAA.....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CGT----------AATTAA-TGATATGCTTT..........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................CCTACTTCAAT--T-TCC--TAAAT.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................CCGTCTCCGCAATGGTCTGAAATATCCA.....2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTTTAGGAAATATGGATTACTT..................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TTTTG--TTGTT-CTGTTTTT....................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TTTG--TTGTT-CTGTTTTT....................................................1740.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................TAGGAAATATGGATTATA...................................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AAAAA---------C---------AA-CTATTTTTTCGT-TTTACATTTATCTTTTA--TT--TTTCGT----------AATTAA-TGATATGATTTAATAAA--------------TAATCCTACATCAAT--T-TCC--TAAATATAACTAATGTGGCT--ATTTT-----TATTTGA----------------------TG---GTGGTTCC-G-AT---AGG----CTTT---CTATA----AA--------AAAGACAAA----------------------------------------CTTATACCAATTTCTCATTTTG--TTGTT-CTGTTTTTAGGAAATATGGATTACTTTCCGTCTCCGCAATGGTCTGAAATATCCAATCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..AAA---------C---------AA-CTATTTTTTCGT-...................................................................................................................................................................................................................................................................................................................................................................1813.00300300000000000000
.........................................TTACATTTATCTTTTA--TT--TTTCGT----------............................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
................................................................TTCGT----------AATTAA-TGATATG..............................................................................................................................................................................................................................................................................................................1812.00202000000000000000
.AAAA---------C---------AA-CTATTTTTTCGT-...................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..............................................................................................TTTAATAAA--------------TAATCCTACATCAAT--.....................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................TTA--TT--TTTCGT----------AATTAA-TGATATG..............................................................................................................................................................................................................................................................................................................2411.00101000000000000000
.AAAA---------C---------AA-CTATTTTTTCGT-T..................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
AAAAA---------C---------AA-CTATTTTTTCGT-T..................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
droSec2
AAAAA---------C---------AA-CTATTTTTTCGT-TTTACAGTTATCTTTTA--TT--TTTCGT----------AATTAA-TGATATGATTTAATAAA--------------TAATCCTACATCAAT--T-TCC--TAAATATAACTAATCTGGCT--ATTTT-----TATTTGA----------------------TG---GTGGTTCC-G-AT---AGG----CTTT---CTATA----AA--------AAAGACAAA----------------------------------------CTTATACCAATTTCTCATTTTG--TTGTT-CTGTTTTTAGGAAATATGGATTACTTTCCGTCTCCGCAATGGTCTGAAATATCCAATCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................GTTATCTTTTA--TT--TTTCGT----------............................................................................................................................................................................................................................................................................................................................1912.0020020
.........................................TTACAGTTATCTTTTA--TT--TTTCGT----------............................................................................................................................................................................................................................................................................................................................2412.0020020
...............................TTTTTCGT-TTTACAGTTATCT......................................................................................................................................................................................................................................................................................................................................................2111.0011000
.............................ATTTTTTCGT-TTTACAGTTATCTTTT...................................................................................................................................................................................................................................................................................................................................................2611.0010010
........................................TTTACAGTTATCTTTTA--TT--TTTCGT----------............................................................................................................................................................................................................................................................................................................................2511.0011000
...........................CTATTTTTTCGT-TTTACAGTT..........................................................................................................................................................................................................................................................................................................................................................2111.0010100
............................................CAGTTATCTTTTA--TT--TGA.........................................................................................................................................................................................................................................................................................................................................18200.0510010
droYak3
AAC---------------------AA-CTATTTTTTCGA-TTTACATTAATCTTTTA--TT-TTTTCGT----------ATTTAA-TGATATGTTTCAATAAA--------------CAGTCCTAAATAAAT--T-TCC--TGAATATAATTATTCTGGCT--ATTTT-----TATTTGATATGTT----------------TG---GTGGTTCCCG-AT---AGG----CGCT---GCTTA----AG--------AAAGACAAA----------------------------------------CTTAAACTAATTTAACAACTTT--TCGTT-TGGTTTTTAGCAATTATGGATTACTTTCCGTCCCCGCAATGGTCTGAAATATCCAATCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................ATTTAA-TGATATGTTTCAATAAA--------------CA....................................................................................................................................................................................................................................................................................2511.00101000000000
.............................................ATTAATCTTTTA--TT-TTTTCGT----------AT..........................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................TTA--TT-TTTTCGT----------ATTTAA-TG...................................................................................................................................................................................................................................................................................................................2011.00101000000000
....................................................................................................AAA--------------CAGTCCTAAATAAAT--T-...................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................................ATATAATTATTCTGGCT--ATTTT-----..............................................................................................................................................................................................................................2211.00101000000000
......................................................................................................................AGTCCTAAATAAAT--T-TCC--TGAATATAA.....................................................................................................................................................................................................................................................2711.00101000000000
....................................................TTTTA--TT-TTTTCGT----------ATTTAA-TG...................................................................................................................................................................................................................................................................................................................2211.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................ATGGATTACTTTCCGTCCCCGCAATGGT.................2811.00101000000000
..............................................................................................TTCAATAAA--------------CAGTCCTAAAT...........................................................................................................................................................................................................................................................................2011.00101000000000
..........................................TACATTAATCTTTTA--TT-TTTTCGT----------AT..........................................................................................................................................................................................................................................................................................................................2611.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................GATTACTTTCCGTCCCCGCA......................2011.00101000000000
......................................................................................................................AGTCCTAAATAAAT--T-TCC--TGA...........................................................................................................................................................................................................................................................2111.00101000000000
.................................................ATCTTTTA--TT-TTTTCGT----------ATTTAA-T....................................................................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................A--------------CAGTCCTAAATAAAT--T-TCC--TGAA..........................................................................................................................................................................................................................................................2411.00101000000000
...................................................................GT----------ATTTAA-TGATATGTTTCAAT.......................................................................................................................................................................................................................................................................................................2211.00101000000000
........................AA-CTATTTTTTCGA-TTTACATTAAT........................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.............................................ATTAATCTTTTA--TT-TTTTCGT----------ATTTA.......................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................................ACATTAATCTTTTA--TT-TTTTCGT----------A...........................................................................................................................................................................................................................................................................................................................2411.00110000000000
.................................................................................TTAA-TGATATGTTTCAATAAA--------------C.....................................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................GTCCTAAATAAAT--T-TCC--TGAAT.........................................................................................................................................................................................................................................................2211.00100100000000
...................................................................GT----------ATTTAA-TGATATGTTTCAATAAA--------------......................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................TTCAATAAA--------------CAGTCCTAAATAAA........................................................................................................................................................................................................................................................................2311.00101000000000
..................................................TCTTTTA--TT-TTTTCGT----------ATTTAA-TGATA................................................................................................................................................................................................................................................................................................................2711.00101000000000
droEre2
AAC---------------------AA-CTATTTTTTCGT-TTTGCATTAATCTTTTA--TT-TTTTCGT----------AATTAA---------------------------------TGTCCTAAATAAAT--G-TCC--TAAATATAAATATTCTGGCT--ATT-T-----TATTTGATTTGTT----------------TG---GTGGTTCCCG-AT---AGG----CTCT---GTTTA----AG--------AGAGACAAA----------------------------------------CTTATAGTAATTTTACAATTTT--ATGTT-CTGTTTATAGCAATTATGGATTACTTTCCGTCTCCGAAACGGTCTGAAATATCCAATCTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.AC---------------------AA-CTATTTTTTCGT-TTTGC..............................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..C---------------------AA-CTATTTTTTCGT-TTTGCATT...........................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.............................................................................................................................AATAAAT--G-TCC--TAAATATAAAA...................................................................................................................................................................................................................................................2211.0011000000
.......................................................................................................................GTCCTAAATAAAT--G-TCC--TAAAT.........................................................................................................................................................................................................................................................2211.0010100000

Generated: 05/18/2015 at 12:04 AM