ID:

dps_1121

 Coordinate:

3:9715003-9715153 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.8 -41.4 -41.4

Flybase annnotation

CDS [Dpse\GA24847-cds]; exon [dpse_GLEANR_15747:4]; intron [Dpse\GA24847-in]

Repeatable elements

NameClassFamilyStrand
TRIMLINELOA-
mature
  1. Unknown_group_200:3983-4002 +
  2. Unknown_group_257:18457-18476 +
  3. Unknown_group_7:137874-137893 +
  4. Unknown_group_137:5702-5721 +
  5. Unknown_group_44:11226-11245 -
  6. Unknown_group_148:6324-6343 +
  7. dps_1121  3:9715036-9715055 +
  8. 2:24534819-24534838 -
  9. Unknown_group_160:21899-21918 +
  10. Unknown_group_166:1415-1434 +
  11. Unknown_group_382:508-527 +
  12. Unknown_group_845:7064-7083 +
  13. Unknown_group_305:15650-15669 +
  14. Unknown_group_781:7416-7435 +
  15. Unknown_singleton_3767:1830-1849 +
  16. Unknown_singleton_3306:922-941 +
  17. Unknown_singleton_372:973-992 +
  18. Unknown_singleton_2540:1432-1451 +
  19. Unknown_singleton_2234:588-607 +
  20. Unknown_group_763:1160-1179 +
  21. Unknown_group_54:13451-13470 -
  22. Unknown_group_108:23580-23599 -
  23. Unknown_group_312:5289-5308 -
  24. Unknown_group_231:31007-31026 -
  25. Unknown_group_162:4105-4124 -
  26. Unknown_group_360:1585-1604 -
  27. dps_201  XL_group3a:2116080-2116099 -
  28. Unknown_group_389:5085-5104 -
  29. 4_group2:993659-993678 -
  30. Unknown_group_819:450-469 -
  31. Unknown_singleton_339:1294-1313 -
  32. Unknown_group_608:5137-5156 -
  33. Unknown_singleton_3288:307-326 -
  34. Unknown_singleton_1033:1650-1669 -
  35. Unknown_singleton_1029:521-540 -
  36. Unknown_singleton_3251:1285-1304 -
  37. Unknown_singleton_779:416-435 -
  38. Unknown_group_145:6255-6274 -
star
  1. Unknown_group_13:15404-15427 -
  2. Unknown_group_83:5667-5690 -
  3. Unknown_singleton_1638:244-267 -
  4. Unknown_group_324:4308-4331 -
  5. Unknown_group_312:5203-5226 -
  6. Unknown_group_137:5787-5810 +
  7. Unknown_group_44:11146-11169 -
  8. Unknown_group_141:10907-10930 -
  9. Unknown_group_69:5321-5344 -
  10. dps_1121  3:9715118-9715141 +
  11. Unknown_group_360:1497-1520 -
  12. 4_group2:993573-993596 -
  13. Unknown_group_606:6186-6209 -
  14. Unknown_group_289:222-245 -
  15. Unknown_group_51:55087-55110 -
  16. Unknown_group_819:361-384 -
  17. Unknown_singleton_1083:265-288 -
  18. Unknown_singleton_2787:4009-4032 -
  19. Unknown_singleton_2297:112-135 -
  20. Unknown_group_145:6166-6189 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCATTATATGCAAGCAGACGAGCTGAGCGCGGAGAGTCAACCTGGCAATGGTAAGAAAAGTACGACTAATATCTAAAGATATTTAGGTTAGGTTAGGTTAAGGCGGTAGCCGGGAGGGGGGATAAGATCGTCCCGCCCCCAAGCTCACTTGGACCTATAAAAGGTCCGTTGTGTTGCCGCATGGGCATGTGCCCCTTCGCGTTGCCCGAACCGTGAACCTGCGGAAGTCATTTACAGTCGCTGAGTTCGAC
***********************************************************************************.............(((...((((((((.(((.((.(((((......))))).)))))..)).(((.(((((((.....)))))))..))).))))))...)))...************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
 SRR902012
CNS imaginal disc
 GSM444067
head
 M022
male body		 M062
head
....................................................................................................................................................................................................................GTGAACCTGCGGAAG........................ 15 0 2 1.50 3 0 1 0 0 0 0 2 0 0 0
...............................................................................TGTATAGGTTAGGTTAGGTTAAGG.................................................................................................................................................... 24 2 17 1.12 19 17 0 0 0 2 0 0 0 0 0
...................................................................................TAGGTTAGGTTAGGTTAAGG.................................................................................................................................................... 20 0 20 1.10 22 21 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................CGAACCGTGAACCTGCGGAAGTCATA................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................CGAACCGTGAACCTGCGGAAGTCAT.................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......TATGCAAGCAGACGAGCTGAGCGCGG........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................CCGTTGTGTTGCCGCATGGGCATG.............................................................. 24 0 20 0.95 19 19 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCATGT............................................................. 26 0 20 0.95 19 17 0 0 0 1 0 0 1 0 0
...................................................................................TAGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 21 0 20 0.80 16 10 0 0 0 3 3 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCATG.............................................................. 25 0 20 0.60 12 0 0 0 2 5 5 0 0 0 0
...............................................................................TGTATAGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 25 2 15 0.60 9 6 0 0 1 0 2 0 0 0 0
..............................................................................ATGTATAGGTTAGGTTAGGTTAAGG.................................................................................................................................................... 25 2 7 0.57 4 4 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CATTTACAGTCGCTGAGTTCG.. 21 0 20 0.50 10 5 1 0 4 0 0 0 0 0 0
...............................................................................TATTTAGGTTAGGTTAGGTTGAGG.................................................................................................................................................... 24 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................TAATACTACTATCTAAAGATAT......................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................GAACCTGCGGAAGGCATTA.................. 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.................................................................................TATAGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 23 1 20 0.50 10 7 0 0 0 3 0 0 0 0 0
...................................................................................TAGGTTAGGTTAGGTTAAGGCG.................................................................................................................................................. 22 0 20 0.45 9 8 0 0 0 1 0 0 0 0 0
.................................................................................TATAGGTTAGGTTAGGTTAAGGCGG................................................................................................................................................. 25 1 20 0.45 9 9 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTTACAGTCGCTGAGTTCGA. 21 0 20 0.45 9 7 1 1 0 0 0 0 0 0 0
..............................................................................ATGTATAGGTTAGGTTAGGTTAAG..................................................................................................................................................... 24 2 7 0.43 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCA................................................................ 23 0 20 0.40 8 7 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCAT............................................................... 24 0 20 0.40 8 7 0 0 1 0 0 0 0 0 0
................................................................................................................................................TCACTTAGACCTATAAAAGGTCCGT.................................................................................. 25 1 14 0.36 5 5 0 0 0 0 0 0 0 0 0
.................................................................................TTTAGGTTAGGTTAGGTTAAGG.................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGCA...................................................................... 26 0 16 0.31 5 4 0 0 1 0 0 0 0 0 0
...................................................................................TAGGTTAGGTTAGGTTAAGGCGA................................................................................................................................................. 23 1 20 0.30 6 6 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCG........................................................................ 24 0 17 0.29 5 4 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................CCGTTGTGTTGCCGCATGGGC................................................................. 21 0 20 0.25 5 4 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................CATGTGCCCCTTCGCGTTGCC............................................. 21 0 20 0.25 5 4 0 0 0 0 0 0 1 0 0
.................................................................................TATAGGTTAGGTTAGGTTAAGG.................................................................................................................................................... 22 1 20 0.25 5 4 1 0 0 0 0 0 0 0 0
...................................................................................TAGGTTAGGTTAGGTTAAG..................................................................................................................................................... 19 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCGCA...................................................................... 24 0 17 0.24 4 4 0 0 0 0 0 0 0 0 0
..........................................................................................................TAGCCGGGAGGGGGGAAAAAA............................................................................................................................ 21 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTCCGTTGTGTTGCCGCATGG................................................................... 21 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTCCGTTGTGTTGCCGCATGGGCATG.............................................................. 26 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTCATTTACAGTCGCTGAGTT.... 21 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGTGTTGCCGCATGGGCATGTGCCCCTT...................................................... 28 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCATGTG............................................................ 27 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGTTGCCGCATGGGCATGTGCCCCTT...................................................... 26 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
....................................................................................AGGTTAGGTTAGGTTAAGGCG.................................................................................................................................................. 21 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATGTGCCCCTTCGCGTTGCC............................................. 20 0 20 0.20 4 3 0 0 1 0 0 0 0 0 0
....................................................................................AGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 20 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
..................................................................................TTAGGTTAGGTTAGGTTAAGGCGG................................................................................................................................................. 24 0 19 0.16 3 1 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGCCGCATGGGCATGTGCCCCTTCG.................................................... 25 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ATGTGCCCCTTCGCGTTGCCC............................................ 21 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GGCATGTGCCCCTTCGCGTTG............................................... 21 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CGTTGTGTTGCCGCATGGGCATG.............................................................. 23 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TGCCCCTTCGCGTTGCCCGAACCG...................................... 24 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.................................................................................TATAGGTTAGGTTAGGTTAAGGCG.................................................................................................................................................. 24 1 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.................................................................................TATAGGTTAGGTTAGGTTAAGGCGA................................................................................................................................................. 25 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGTGTTGCCGCATGGGCATGTGC........................................................... 23 0 20 0.15 3 0 0 0 0 0 3 0 0 0 0
.............................................................................................TAGGTTAAGGCGGTAGCCGGGAG....................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGTTGCCGCATGGGCATGTGC........................................................... 21 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
........................................................................................TAGGTTAGGTTAAGGCGGTAGCCGGGA........................................................................................................................................ 27 0 20 0.15 3 0 0 3 0 0 0 0 0 0 0
...............................................................................TGTATAGGTTAGGTTAGGTTAAG..................................................................................................................................................... 23 2 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..................................................................................................................................................ACTTAGACCTATAAAAGGTCCGTTG................................................................................ 25 1 14 0.14 2 2 0 0 0 0 0 0 0 0 0
.................................................................................TTTAGGTTAGGTTAGGTTAA...................................................................................................................................................... 20 0 7 0.14 1 1 0 0 0 0 0 0 0 0 0
...............................................................................TTTATAGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 25 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGCAT..................................................................... 27 0 16 0.13 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGC....................................................................... 25 0 17 0.12 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGC.......................................................................... 22 0 17 0.12 2 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTT............................................................................ 20 0 18 0.11 2 2 0 0 0 0 0 0 0 0 0
.................................................................................TATAGGTTAGGTTAGGTTAAGGCGAAA............................................................................................................................................... 27 3 19 0.11 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGGGCATGTGCCCCTTCGCGTTG............................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGG................................................................... 20 0 20 0.10 2 0 0 1 0 0 1 0 0 0 0
.........................................................................................................................................................................TGTGTTGCCGCATGGGCATG.............................................................. 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................TTAAGGCGGTAGCCGGGAGGGG.................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
........................................................................................TAGGTTAGGTTAAGGCGGTAGC............................................................................................................................................. 22 0 20 0.10 2 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................TCCCGCCCCCAAGCTCACTTGGAA................................................................................................. 24 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................TAGGTTAGGTTAGGTTAAGGCGGTA............................................................................................................................................... 25 0 20 0.10 2 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTTCGA. 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGGGCATGTGCCCCTTCGCGTTGC.............................................. 24 0 20 0.10 2 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGA..... 19 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................TTAGGTTAGGTTAAGGCGG................................................................................................................................................. 19 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................TTAGGTTAGGTTAAGGCGGTAGC............................................................................................................................................. 23 0 20 0.10 2 0 0 0 1 0 1 0 0 0 0
........................................................................................TAGGTTAGGTTAAGGCGG................................................................................................................................................. 18 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTTC... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
......................................................................................GTTAGGTTAGGTTAAGGCGGTA............................................................................................................................................... 22 0 20 0.10 2 0 0 2 0 0 0 0 0 0 0
...................................................................................TAGGTTAGGTTAGGTTAAGGCGGGA............................................................................................................................................... 25 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0
........................................................................................TAGGTTAGGTTAAGGCGGTAGCCGGG......................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTT.... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
........................................................................................TAGGTTAGGTTAAGGCGGTAG.............................................................................................................................................. 21 0 20 0.10 2 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CCGTTGTGTTGCCGCATGGGCA................................................................ 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGCCGCATGGGCATGTGCCCCTTC..................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................TAAGGCGGTAGCCGGGAGGG..................................................................................................................................... 20 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGGTGCCGCA...................................................................... 26 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCATGTT............................................................ 27 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GTGCCCCTTCGCGTTGCCCG........................................... 20 0 20 0.10 2 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................TGGGCATGTGCCCCTTCGCGTT................................................ 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCCCTTCGCGTTGCCCGAACCGTGA................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................CACTTAGGCCTATAAAAGGTCCGT.................................................................................. 24 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AAGGTCCGTTGTGTTGCCGCATGGGCA................................................................ 27 0 15 0.07 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................ATAAAAGGTCCGTTGTGTTGCCGCA...................................................................... 25 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGCATG.................................................................... 28 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCGCATGGG.................................................................. 28 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCGCATG.................................................................... 26 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAAGGTCCGTTGTGTTGCCGCATGGG.................................................................. 26 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGA.......................................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTG........................................................................... 21 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAAAGGTCCGTTGTGTTGCC......................................................................... 21 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCG........................................................................ 22 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................AGGATATCTAGGTTAGGGT............................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCAA........................................................................ 24 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGT............................................................................. 19 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................ATAAAAGGTCCGTTGTGTTG........................................................................... 20 0 18 0.06 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAAGGTCCGTTGTGTTG........................................................................... 18 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TAAAAGGTCCGTTGTGTTG........................................................................... 19 0 19 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................TTAGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 22 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGTTGT.......................................................................... 22 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................TAAGGCGGTAGCCGGGAGG...................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GGCATGTGCCCCTTCGCGTTGC.............................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................GAGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................TTCGCGTTGACCGAACCGTGA................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATGGGCATGTGCCCCTTCGCGTTGCC............................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGTTGCCGCATGGGCATGTGCCCCT....................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CCCAAGCTCACTTGGACCTAT............................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTGTGCCCCTTCGCGTTGCC............................................. 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTCCGTTGTGTTGCCGCATG.................................................................... 20 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGACATG.............................................................. 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................TAGGTTAGGTTAGGTTAAGGCGGTAG.............................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GTGCCCCTTCGCGTTGCCCGA.......................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................TAAGGCGGTAGCCGGGAGGGG.................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................CGTTGTGTTGCCGCATGGGCATGTG............................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGCCGCATGGGCATGTGCCCCTTCGT................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CCGTTGCGTTGCCGCATGGGCATG.............................................................. 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGCCGCATGGGCATGTGCCC......................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGGGCATGTGCCCCTTCGCGTTGCCC............................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GCATGTGCCCCTTCGCGTTG............................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................TTAGGTTAGGTTAAGGCGGTAGCCGG.......................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TGTGTTGCCGCATGGGCATGTGCCTCT....................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................AAGGCGGTAGCCGGGAGGGG.................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CGCATGGGCATGTGCCCCTT...................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGTCATTTACAGTCGCTGAG...... 20 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TATAAAAGGTCCGTTGTGGTG........................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................TAGGTTAGGTTAAGGCGGTAGCCGG.......................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTCGCGTTGCCCGAACCGTGAAA................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTCCGTTGTGTTGCCGCATGGGCATGG............................................................. 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCATGTGC........................................................... 28 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTTCG.. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGCCGCATGGGCATGTGCCCCTT...................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................AAAAGGTCCGTTGTGGTGCCGCATGG................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................TTAGGTTAGGTTAAGGCGGTAG.............................................................................................................................................. 22 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................CTTCGCGTTGCCCGAACCGTG.................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GGTCCGTTGTGTTGCCGCATGGGCATGT............................................................. 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................CATGTGCCCCTTCGCGTTGCCCGAAC........................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................AACGTCCGTTGTGTTGCC......................................................................... 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..ATCATACGCAGGCAGACGA...................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGCCGCATGGGCATGTGCCCCT....................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCAGTTGTGTTGCCGCATGGGCATG.............................................................. 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................TGTGCCCCTTCGCGTTGCCCGAACA....................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TCCCGCCCCCAAGCTCACTTGGAC................................................................................................. 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................CCGTTGTGTTGCCGCATGGGCAT............................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TAGGTTAAGGCGGTAGCCGGGAGGGGGT.................................................................................................................................. 28 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCAGTTGTGTTGCCGCATGGGCATGT............................................................. 26 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................CGCTCCCAAGCTAACTTGGACC................................................................................................ 22 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................TAGGTTAAGGCGGTAGCCGGGAGGGG.................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGCCGCATGGGCATGTGCCCCTTCG.................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................TAAGGCGGTAGCCGGGAG....................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTAGGTTAAGGCGGTAGCCGGG......................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATGGGCATGTGCCCCTTCGC................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GTCATTTACAGTCGCTGAG...... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................CGTTGTGTTGCCGCATGGGCA................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCTTCGCGTTGCCCGAACCGT..................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GCATGTGCCTCTTCGCGTTG............................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................TACAGTCGCTGAGTTCGAC 19 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................TTGTGTTGCCGCATGGGCATGTGCCCCT....................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGTTGCCGCATGGGCATGTGCC.......................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGTTGCCGCATGGGCATGTGCCCCTTC..................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GTGCCCCTTCGCGTTGCCC............................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCCTG.............................................................. 25 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................ATTTACAGTCGCTGAGTTCGG. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................CGGCAACGTGGCAATGGTA...................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................CCGCATGGGCATGTGCCCC........................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................CGTTGTGTTGCCGCATGGG.................................................................. 19 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................TTGCCGCATGGGCATGTGCCCCT....................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTCGCGTTGCCCGAACCGTGA................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TAGGTTAAGGCGGTAGCCGGGAGG...................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................TAAGGCGGTAGCCGGGAGGGGG................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GCATGTGCCCCTTCGCGTTGC.............................................. 21 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................TAGGTTAAGGCGGTAGCCGGGA........................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TTGCCGCATGGGCATGTGCCTCTTC..................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................GTTGCCGCATGGGCATGTGCCTCT....................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AGTCATTTACAGTCGCTGAGT..... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................TGTGTTGCCGCATGGGCATGTG............................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTAGGTTAAGGCGGTAGCCGG.......................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GGTCCGTTGTGTTGCCGCATGGGCATG.............................................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CATGGGCATGTGCCCCTTCGCGTTG............................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................ACCGGGCTATGGTAAGAC.................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................TATAGGTTAGGTTAGGTTAAG..................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TGTTGCCGCATGAGCATGTGCCCC........................................................ 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GTGTGCCCCTTCGCGTTG............................................... 18 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................TGGGTTAGGTTAGGTTAAGGC................................................................................................................................................... 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................TGTTGCCGCATGGGCATGTGCCCC........................................................ 24 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................GCCCCTTCGCGTTGCCCGAACCGT..................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTTGTGTTGCCGCATGGGCATG.............................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............................................................................................TTAGGTTAAGGCGGTAGCCGGGAGG...................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTAGCGTTGCCCGAACCGTA.................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................TCCGTTGTGTTGCCGCATGGGCATGG............................................................. 26 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ATTTACAGTCGCTGAGTTC... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TAGGTTATGGCGGTAGCCGGGA........................................................................................................................................ 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GTCCGTTGTGTTGCCGCA...................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGGGCATGTGCCCCTTCGCGTTGCC............................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................CCCCTTCGCGTTGCCCGAACCGTG.................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGTAATATACGTTCGTCTGCTCGACTCGCGCCTCTCAGTTGGACCGTTACCATTCTTTTCATGCTGATTATAGATTTCTATAAATCCAATCCAATCCAATTCCGCCATCGGCCCTCCCCCCTATTCTAGCAGGGCGGGGGTTCGAGTGAACCTGGATATTTTCCAGGCAACACAACGGCGTACCCGTACACGGGGAAGCGCAACGGGCTTGGCACTTGGACGCCTTCAGTAAATGTCAGCGACTCAAGCTG
**************************************************************.............(((...((((((((.(((.((.(((((......))))).)))))..)).(((.(((((((.....)))))))..))).))))))...)))...*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
 M062
head
 GSM444067
head
.................................................................................................................................................................................................GGAAGCGCAACGGGCTTGGCACT................................... 23 0 20 11.30 226 226 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGAAGCGCAACGGGCTTGGCACT................................... 24 0 20 6.35 127 116 0 4 5 2 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTTGGCACT................................... 25 0 20 2.00 40 0 37 0 2 0 1 0 0
..................................................................................................................................................................................................GAAGCGCAACGGGCTTGGCACT................................... 22 0 20 1.55 31 31 0 0 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCGCAACGGGCTTG........................................ 21 0 20 1.15 23 0 20 3 0 0 0 0 0
...................................................................................................................................................................................................AAGCGCAACGGGCTTGGCACT................................... 21 0 20 1.15 23 22 0 0 1 0 0 0 0
................................................................................................................................................................TTCCAGGCAACACAACGGCGTACCCGT................................................................ 27 0 15 1.07 16 11 0 2 0 2 0 1 0
........................................................................................................................................................................................................CAACGGGCTTGGCACTTGGACGCCT.......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CGCAACGGGCTTGGCACTTGGACGCCGT......................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CGGGCTTGGCACTTGGACGCCT.......................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CGCAACGGGCTTGGCACTTGGACGCCT.......................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCGCAACGGGCTTGGCACTT.................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTTGGCACTAAG................................ 28 2 1 1.00 1 1 0 0 0 0 0 0 0
............TCGTCTGCTCGACTCGCGCCTCTCAGT.................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTTGGCACTGG................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CGGGCTTGGCACTTGGACGCCGT......................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................GCGCAACGGGCTTGGCACTTGGA............................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTTGGCAC.................................... 24 0 20 0.65 13 11 2 0 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCGCAACGGGCTT......................................... 20 0 20 0.65 13 1 12 0 0 0 0 0 0
....................................................................................................................................................................................................AGCGCAACGGGCTTGGCACT................................... 20 0 20 0.55 11 11 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................CCTTCAGTAAATGTCAGCGACT....... 22 0 2 0.50 1 1 0 0 0 0 0 0 0
...............................................................................................................................AAAAGGGCGGGGGTTCGAGT........................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGGACGCCTTCAGTAAATGTCAGT........... 24 1 2 0.50 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................GGATATTTTCCAGGCAACACAACGGCGT...................................................................... 28 0 13 0.46 6 6 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTACACGGGGAAGCGCAACGGGCT.......................................... 24 0 20 0.45 9 1 8 0 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCGCAACGGGCTTGGCACT................................... 26 0 20 0.40 8 0 0 7 0 0 0 1 0
...............................................................................................................................................................TTTCCAGGCAACACAACGGCGTACCCGT................................................................ 28 0 15 0.40 6 6 0 0 0 0 0 0 0
....................................AGTTGGACCGGTACCGATCT................................................................................................................................................................................................... 20 3 5 0.40 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................ATTTTCCAGGCAACACAACGGCGT...................................................................... 24 0 17 0.35 6 5 1 0 0 0 0 0 0
.............................................................................................................................................................................................ACGGGGAAGCGCAACGGGCTT......................................... 21 0 20 0.35 7 0 0 7 0 0 0 0 0
.........................................................................................................................................................................................................................GGACGCCTTCGGTGAATGTCA............. 21 2 3 0.33 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................GATATTTTCCAGGCAACACAACGGCGT...................................................................... 27 0 13 0.31 4 4 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCACAAAGGGCTTGGCACT................................... 25 2 20 0.30 6 6 0 0 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCGCAACGGGCT.......................................... 19 0 20 0.30 6 1 2 3 0 0 0 0 0
.............................................................................................................................................................................................ACGGGGAAGCGCAACGGGCT.......................................... 20 0 20 0.30 6 2 0 4 0 0 0 0 0
..............................................................................................................................................................................................TGGGGAAGCGCAACGGGCTT......................................... 20 1 20 0.25 5 0 0 5 0 0 0 0 0
............................................................................................................................................................................................CACGGGGAAGCGCAACGGGCT.......................................... 21 0 20 0.20 4 0 0 4 0 0 0 0 0
............................................................................................................................................................................................TACGGGGAAGCGCAACGGGCTT......................................... 22 1 20 0.20 4 0 0 4 0 0 0 0 0
...........................................................................................................................................................................................ACACGGGGAAGCGCAACGGGC........................................... 21 0 20 0.20 4 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................GTACACGGGGAAGCGCAACGGGC........................................... 23 0 20 0.20 4 0 1 3 0 0 0 0 0
.................................................................................................................................................................................................GGAAGCGCAACGGGCTTGGCACC................................... 23 1 20 0.20 4 4 0 0 0 0 0 0 0
............................................................................................................................................................................................CACGGGGAAGCGCAACGGGCTTGGCACT................................... 28 0 20 0.20 4 0 2 1 0 0 0 1 0
......................................................................................................................................CGGGGGTTCGAGTGAACCTGGATAT............................................................................................ 25 0 20 0.20 4 3 0 0 1 0 0 0 0
........................................................................................................................................................................................CGTACACGGGGAAGCGCAACGGGCT.......................................... 25 0 20 0.20 4 0 1 3 0 0 0 0 0
..............................................................................................................................................................TTTTCCAGGCAACACAACGGCGT...................................................................... 23 0 17 0.18 3 3 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTCAGTAAATGCCAGCGACTCAAGCT. 26 1 6 0.17 1 1 0 0 0 0 0 0 0
..........................................................................................................................................GGTTCGAGTGAACCTGGATAT............................................................................................ 21 0 20 0.15 3 3 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGAAGCGCAACGGGCTTGGC...................................... 21 0 20 0.15 3 2 0 1 0 0 0 0 0
......................................................................................................................................CGGGGGTCCGAGTGAACCTGG................................................................................................ 21 1 20 0.15 3 3 0 0 0 0 0 0 0
..........................................................................................................................................GGTTCGAGTGAACCTGGAT.............................................................................................. 19 0 20 0.15 3 3 0 0 0 0 0 0 0
..............................................................................TACATATCCAATCCAATCCAATTCC.................................................................................................................................................... 25 2 7 0.14 1 1 0 0 0 0 0 0 0
............................................................................................................................................................TATTTTCCAGGCAACACAACGGCGT...................................................................... 25 0 16 0.13 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................TTTCCAGGCAACACAACGGCGT...................................................................... 22 0 17 0.12 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................TTTCCAGGCAACACAACGGCGTAC.................................................................... 24 0 17 0.12 2 2 0 0 0 0 0 0 0
.........................................GACCGTTATCATTCCTTT................................................................................................................................................................................................ 18 2 9 0.11 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTTCCAGGCAACACAACGGCG....................................................................... 21 0 18 0.11 2 2 0 0 0 0 0 0 0
....................................................................................................................................TGCGGGGGTCCGAGTGAACC................................................................................................... 20 2 20 0.10 2 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCACAAAGGGCTTGGCACT................................... 26 2 20 0.10 2 1 0 0 1 0 0 0 0
...................................................................................................................................GGGCGGGGGTTCGAGTGAACCTGGAT.............................................................................................. 26 0 20 0.10 2 0 0 2 0 0 0 0 0
....................................................................................................................................GGCGGGAGTTCGAGTGAACCTGGAT.............................................................................................. 25 1 20 0.10 2 0 2 0 0 0 0 0 0
....................................AGTTGGACCGGTACCGATC.................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAAGCGCGGCGGGCTTGGC...................................... 20 2 20 0.10 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................TACACGGGGAAGCGCAACGGG............................................ 21 0 20 0.10 2 2 0 0 0 0 0 0 0
......................................................................................................................................CGGGGGTCCGAGTGAACCT.................................................................................................. 19 1 20 0.10 2 2 0 0 0 0 0 0 0
..................................................................................................................................................................CCAGGCAACACAACGGCGT...................................................................... 19 0 20 0.10 2 2 0 0 0 0 0 0 0
...................................................................................................................................GGGCGGGGGTTCGAGTGAACCTGGATAT............................................................................................ 28 0 20 0.10 2 0 2 0 0 0 0 0 0
.................................................................................................................................................................................................AGAAGCGCAACGGGCTTGGCACT................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0
....................................................................................................................................GGCGGGGGTTCGAGTGAACCTGGAT.............................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTTGGCAAT................................... 25 1 20 0.10 2 0 0 2 0 0 0 0 0
........................................................................................................................................................................................TGTACACGGGGAAGCGCAACGGGCT.......................................... 25 1 20 0.10 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCAACGGGCTTGGCACT................................... 17 0 20 0.10 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................CCAGGCAACACAACGGCGTACCCGTAC.............................................................. 27 0 20 0.10 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTTG........................................ 20 0 20 0.10 2 0 0 2 0 0 0 0 0
........................................................................................................................................................TGGATATTTTCCAGGCAACACA............................................................................. 22 0 14 0.07 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................GATATTTTCCAGGCAACACAA............................................................................ 21 0 15 0.07 1 1 0 0 0 0 0 0 0
................................................................................................................................................................TTCCAGGCAACACAACGGCGTACCCG................................................................. 26 0 15 0.07 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTTTCCAGGCAACACAACGGCGTACCCGT................................................................ 29 0 15 0.07 1 1 0 0 0 0 0 0 0
................................................................................................................................................................TTCCAGGCAACACAACGGCGTTCCCGT................................................................ 27 1 16 0.06 1 1 0 0 0 0 0 0 0
.........................................................................ATTTTTATTAATCGAATCCAA............................................................................................................................................................. 21 3 16 0.06 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................ATTTTCCAGGCAACACAACGGCGTAC.................................................................... 26 0 17 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................TTTCCAGGCAACACAACGGCGTACC................................................................... 25 0 17 0.06 1 1 0 0 0 0 0 0 0
............................................................ATGTTGAATATAGATTTCTG........................................................................................................................................................................... 20 3 18 0.06 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................ATTTTCCAGGCAACACAACGGCG....................................................................... 23 0 18 0.06 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTTTCCAGGCAACACAACGGCG....................................................................... 22 0 18 0.06 1 1 0 0 0 0 0 0 0
............................CGCTTCACATTTGGACCGT............................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 1 0 0
........................................................................................................................................TGGGTTCGAGTGAACCTGGGT.............................................................................................. 21 2 20 0.05 1 0 0 0 0 0 0 0 1
..................................................................................................................................................................CCAGGCAACACAACGGCG....................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACCCGTACACGGGGAAGCGCAACGGGCT.......................................... 28 0 20 0.05 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................TGGGGAAGCGCAACGGGCTTGGCACT................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCT.......................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................GGCGGGGGTTCGAGTGAACCTGGATAT............................................................................................ 27 0 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCGCAACGGGCTTGGCAAT................................... 26 1 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................CAGGCGGCGCAACGGCGTACC................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAAGCGCAACGGGATTGGCACT................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACACGGGGAAGCGCAACGGGCTT......................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TTTCGGGGAAGCGCAACGGGCTT......................................... 23 3 20 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCGCGACGGGCTT......................................... 20 1 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................TCCAGGCAACACAACGGCGTACCCGTC............................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................ACTAGCTTGGCACATGGA............................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0
...................................................................................................................................................GAACCAGGATATTTTCCAGGCAACACC............................................................................. 27 2 20 0.05 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................CAGGCAACACAACGGCGT...................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................GGGGTTCGAGTGAACCTGGATATTT.......................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTTGGC...................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAAGCGCAATGGGCTTGGCACT................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................CGGGGGTTCGAGTGAACCT.................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCACAACGGGCTTGGCACT................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................AGGGCGGGGGTTCGAGTGAAC.................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTACACGGGGAAGCGCAACG.............................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................GGGTTCGAGTGGACCTGGATA............................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................GGGGTTCGAGTGAACCTGGAT.............................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACGGGGAAGCGCAACGGGCTTGGCACT................................... 27 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................................................................................................................................................................TTCGGGGAAGCGCAACGGGCTTGGCACT................................... 28 2 20 0.05 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACGTACACGGGGAAGCGCAACGGGCT.......................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................TTCGGGGAAGCGCAACGGGCTT......................................... 22 2 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................AAAGGCAACACAACGGCGTACCCGT................................................................ 25 2 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGCGCGGCGGGCTTGGCACT................................... 20 2 20 0.05 1 0 0 1 0 0 0 0 0
..................................................................................................................................AGGGCGGGGGTCCGAGTGAACCTGGAT.............................................................................................. 27 1 20 0.05 1 0 1 0 0 0 0 0 0
..................................................................................................................................AGGGCGGGGGTTCGAGTGA...................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCCACGGGCTTGGCACT................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACTGGCTTGGCACT................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0
.......................................................................................................................................GGGGGTTCGAGTGAACCTGGATAT............................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGAAGCGCGACGGGCTTGGC...................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................CGTACCCGTACACGGGGAAGCGCAA................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................GAAGCGCAACGGGCTTGGCAC.................................... 21 0 20 0.05 1 0 1 0 0 0 0 0 0
........................................................................................................................................GGGGTCCGAGTGAACCTGGATATT........................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................CCAGGCAACACAACGGCGTACTCGTACAC............................................................ 29 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................GCGGGGGTCCGAGTGAACCTG................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................ACGGGGAAGCGCGACGGGCTT......................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGAAGCGCAACGGGCTTGGCA..................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................TTTTCGCGGCATCACAACGG......................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................GGGGTTCGAGTGAACCTGGATA............................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAAGCGCAACGGGCTCGGCACT................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTACACGGGGAAGCGTAACGGGCT.......................................... 24 1 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................AGCGCAACGGGCTTGGCAC.................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACACGGGGAAGCGCAACGGGCT.......................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................GGGGAAGCGCAACGGGCTT......................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................AAGAAGCGCAACGGGCTTGGCACT................................... 24 2 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................ACACGGGGAAGCGCAACGGGCTTGGCACT................................... 29 0 20 0.05 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................TTTTCGGGGAAGCGCAACGGGCTT......................................... 24 3 20 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................................GTCCGAGTGAACCTGGATATT........................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTACACGGGGAAGCGCAACGGGCTT......................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GGAAGCGCAACGGGCTTGGCACG................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................CCAGGCAACACAACGGCGTACTCGT................................................................ 25 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................GTCCGAGTGAACCTGGATA............................................................................................. 19 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................CTACACGGGGAAGCGCAACGGGC........................................... 23 1 20 0.05 1 0 0 1 0 0 0 0 0
..................................................................................................................................AGGGCGGGGGTCCGAGTGAAC.................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CCCGTACACGGGGAAGCGCAACG.............................................. 23 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGGAGCGCAACGGGCTT......................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTACGGGGAAGCGCAACGGGCT.......................................... 22 2 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................GGGAAGCGCAACTGGCTTGGCACT................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGGAGCGCGGCGGGCTTGGC...................................... 21 3 20 0.05 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................GCGCAACGGGCTTGGCACC................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................GGGAAGCGCAACGGGCTTGGCAAT................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................GGGTTCGAGTGAACCTGGATA............................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TCAGTAAATGTCAGCGACTC...... 20 0 20 0.05 1 1 0 0 0 0 0 0 0
......................................................................................................................................CGGGGGTTCGAGTGAACCTG................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CGGCGTACCCGTACACGGGGAAG..................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................GGCGGGGGTTCGAGTGAAC.................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................CGGGGAAGCGCAACGGGCTTGGC...................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0
.....................................................................................................................................................AGCTGATTATTTTCCAGGC................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................GAACCGCAACGGGCTTGGCACT................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0
....................................................................................................................................GGCGGGGGTCCGAGTGAAC.................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................GGCAACACAACGGCGTACCCGTACAC............................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................GGCGGGGGTCCGAGTGAACCT.................................................................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................AGTACACGGGGAAGCGCAACGGGCTT......................................... 26 1 20 0.05 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................GGGGAGCGCAACGGGCTTGGC...................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................AGCGCAACGGGCTTGGCGCT................................... 20 1 20 0.05 1 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................GGAAGCGCAACGGGCTTGGCAC.................................... 22 0 20 0.05 1 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:9714953-9715203 + dps_1121 GCATT--ATATGCAAGCAGACGAGCTGAGCGCGGAGAGTCAACCT------------GGCAATGGTAAGAAAAGTAC-----------------------GACTAA---TATCTAA-AGAT--A---------T-----TTAGGTTAGGTTAGGTTAAGGCGGTAGCCGGGAGGGGGGA--------------T-AAGATCGTCCCGCCCCC--AAGCTCACTTGGACCTATAAAAGGTCCGTTGTGTTGCCGCA----------TGGGCATGTGCCCCTTCGCG--------------------------TTGCCCGAACCGT--------------------------GAAC------------CTGCGGAAGTCATTTACAGTCGCTGAGTTCGAC
droPer2 scaffold_57:55923-56156 - GAAGAT-AAATACATGTC--------------------------CCGCAGACATACGAACAAAA---------ATATGAAAAGTTAACAGAAAAGACAGTGGCTGAGATCT-ACGA-ATAAATTAATG-----G-AGGGTATGGTTAGGTTAGGTTAAGGCGGTAGCCG--------GGAGG-G----GGAGATAAAGAAACCCCCGCCCCCCAAAGCTCTCTGGGACCTATAAGAGGAACATTGTGTTGCCGCA----------TGGGCAACTGCCCCTTCTCG--------------------------CTGCCTG------------------------------------------------------------------------AAACCGTGA
droWil2 scf2_1100000004954:3944356-3944410 - ACATT--ATATGCAGGACGACGAGTTGAGCAGTAAGAGCCAACCG------------GGCAATTGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12823:1606210-1606262 + ACTCT--ATATGCAAGGCGCTGAGTCAATTGCACAGACTCTGCCT------------GGCAATTGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_11216:1012-1196 - TCAAT--CTTCCAATG------------------------------------------------G----------------------------------------------------------------------TAAGATAGGTTAGGTTAGGTTATATCGGCTGTCA--------GCCCGGTAGGCTG--------------------------ACACACTT-----------AGGCCCGTTGTGTTACCGAAAAAGGGGATCTAGGGATTTCCTCCT--GCA----------------------GTCGTGCCTTCAGC----------ATTCCAACATATATTT---AAAT------------TTGCGGCAGCTTGTTACTGATATCGAATTGGAA
droAna3 scaffold_949:819-1066 + TGCAA--ACAGACAACCAGACAAACGGA---------CACACACT------------GGCATTTTGAAGAAGAAGAA-----------------AACATCGA-A----------------T--T---------T-----TTTGAATAGGTTAAGTTAGGGTGAT-GCTAGGGGGACTTA--------------G-AAGACCCCCCCGCTT--------CCACTTGAGCCGCT--AGGGCTCCTTGTGTTACCGCT----------AGGGCAAGGGTTTCACCGAA--------------------------GTGCTTCTCCTAGGTAGAGGA----AGCATCTCGTTGAGAGAT------------CTGCGACAATCATTGACTGTCCTGGAGTTGGAC
droBip1 scf7180000396310:9136-9295 - TGGTT--GCGAAG-----------------------AATCCTTACCGTA------------AAAG---------------------------------TTGG-TAA---AG-TTAA-AGAT--GAGTACCAGGT-----ATAGGTTAGGTTAGGTTGAGGCGGCGATGC--GGTGCCAGTCA-T----TG----------CCACCGGCAT--------CCACTCGAGCCGCT--GGGACTCCTTGTGATACCGCA----------CAGGCAAGTGGTCCT-----------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302476:2405527-2405582 - ACACT--ATATGCAGGGCGACGAGCTGAGCGCCGAGAGCCAGCCC------------GGCAATGGTAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453851:1275519-1275577 - GCTCT--ACATGCAGAGCGACGAGCTGAGGGCGGAGAGTCAGCCT------------GCCAATTGTAAGATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000486892:25484-25582 + TAAAA--ATAATA---------------------------------------------------------------------------------------------------------------------------------GGTTAGGTTAGATTAGAGCAGCTGTCA--------AATTA-T----TG--------------------------ACACACTTGGACCTA--GAAGGTCCGTTGCGATACCGCG----------TGGATCTGTGTCCCCT----------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776741:4212-4376 + ATTGTCTACATGCC--AAGATGATCCAACACAAGGGGGTCATACA------------GGCATTACAAA--------------------------AACCTTGGCTAA---GG-TTCAAAGAC--A---------A-TAGGTTAGGATAGGTTAGGTTAGGACGGCTGCCA--------GACTA-TAGCCTG--------------------------GCACACTTAGACCTCT-GTGGGTCCATTGTGATACCGTA----------TG------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301506:1732479-1732537 - GCACT--ACATGCAGGGCGACGAGCTGAGGGAGGACAACCAGCCA------------AGCAACTGTAGGAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000411560:1-90 + TA--------------------------------------------------------------------------------------------------------------------------------------------GGTTAGGTTAGATTAGAGCAGCTGTCA--------AATTA-T----TG--------------------------ACACACTTGGACCTA--GAAGGTCCGTTGCGATACCGCG----------TGGATCTGTGTCCCCT----------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409183:652685-652768 + GCACT--ACATGCAGGGCGACGAGCTTAGAGAAGATAATCAGCCA------------GAAAACTGTAAGGATA-CAC-----------------------CATAAA---T------------------------------------------------------------------------------------------------------------ATATTTAAACCTTT------------------------------------------------A----------------------------------------------------------------------------------------------------------------------
dm3 chr2R:5003116-5003174 + GTACT--ACATGCAGGGCGACGAGCAAAGTGAAGATAAGCAACCG------------GGCAGCTGTAAGAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:5812732-5812790 + GTACT--ACATGCAGGGCGACGAGCAAAGGGAAGATAAGCAACCG------------GGCAACTGTAAGAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:2640962-2641020 + GTACT--ACATGCAGGGCGACGAGCAAAGGGAAGATAAGCAACCG------------GGCAACTGTAAGAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_004:367792-368012 - GCCAA--A----------------------------AACCAATCCCACAATAATATTAATATAA---------ATGT-----------------AACCTCAA-TAA---AT-TTGG-AAAA--A---------TTTACGTTAGGTTAGGTTAGGTTTTACCGGCCGTCG--------GTC--------CG--------------------------ACGCACTTAGACCATT-AGAAGTCCATTGTGATACCGTG----------TATGT--TTTCCCCTTTGCGCGTCGAGGTTCGTGTGAAGTTAGCAGTTTCCCCAGCCAG--------------------------AGGCTCTGGTGAATTTTTGTG----------------GC--------TT
droEre2 scaffold_4929:17646734-17646789 - GTACT--ACATGCAGGACGACGATCAAGGGGAAGATAAGCTACCG------------GGCAACTGTAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCATT--ATATGCAAGCAGACGAGCTGAGCGCGGAGAGTCAACCT------------GGCAATGGTAAGAAAAGTAC-----------------------GACTAA---TATCTAA-AGAT--A---------T-----TTAGGTTAGGTTAGGTTAAGGCGGTAGCCGGGAGGGGGGA--------------T-AAGATCGTCCCGCCCCC--AAGCTCACTTGGACCTATAAAAGGTCCGTTGTGTTGCCGCA----------TGGGCATGTGCCCCTTCGCG--------------------------TTGCCCGAACCGT--------------------------GAAC------------CTGCGGAAGTCATTTACAGTCGCTGAGTTCGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................GT--------------------------GAAC------------CTGCGGAAG........................1521.5030000000102
............................................................................................................................................TAGGTTAGGTTAGGTTAAGG...............................................................................................................................................................................................................................................20201.102202100100000
............................................................................................................................................................................................................................................................................................................................CGAACCGT--------------------------GAAC------------CTGCGGAAGTCATA...................2611.0010000000100
............................................................................................................................................................................................................................................................................................................................CGAACCGT--------------------------GAAC------------CTGCGGAAGTCAT....................2511.0010100000000
........TATGCAAGCAGACGAGCTGAGCGCGG.............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
...............................................................................................................................................................................................................................................CCGTTGTGTTGCCGCA----------TGGGCATG..............................................................................................................................24200.951901900000000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCATGT.............................................................................................................................26200.951901710010000
............................................................................................................................................TAGGTTAGGTTAGGTTAAGGC..............................................................................................................................................................................................................................................21200.801601030300000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCATG..............................................................................................................................25200.60120050502000
........................................................................................................................................................................................................................................................................................................................................................................................CATTTACAGTCGCTGAGTTCG..21200.50100500004100
............................................................................................................................................TAGGTTAGGTTAGGTTAAGGCG.............................................................................................................................................................................................................................................22200.4590810000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATTTACAGTCGCTGAGTTCGA.21200.4590700000110
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCA................................................................................................................................23200.4080700001000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCAT...............................................................................................................................24200.4080700001000
.....................................................................................................................................T-----TTAGGTTAGGTTAGGTTAAGG...............................................................................................................................................................................................................................................2230.3310100000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGCA----------......................................................................................................................................26160.3150400001000
............................................................................................................................................TAGGTTAGGTTAGGTTAAGGCGA............................................................................................................................................................................................................................................23200.3060600000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCG..................................................................................................................................................24170.2950400100000
...............................................................................................................................................................................................................................................CCGTTGTGTTGCCGCA----------TGGGC.................................................................................................................................21200.2550400100000
.............................................................................................................................................................................................................................................................................CATGTGCCCCTTCGCG--------------------------TTGCC...................................................................................21200.2550400010000
............................................................................................................................................TAGGTTAGGTTAGGTTAAG................................................................................................................................................................................................................................................19200.2550500000000
.......................................................................................................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCGCA----------......................................................................................................................................24170.2440400000000
.............................................................................................................................................................................................................................................GTCCGTTGTGTTGCCGCA----------TGG...................................................................................................................................21200.2040400000000
.............................................................................................................................................................................................................................................GTCCGTTGTGTTGCCGCA----------TGGGCATG..............................................................................................................................26200.2040400000000
......................................................................................................................................................................................................................................................................................................................................................................................GTCATTTACAGTCGCTGAGTT....21200.2040400000000
...................................................................................................................................................................................................................................................TGTGTTGCCGCA----------TGGGCATGTGCCCCTT......................................................................................................................28200.2040400000000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCATGTG............................................................................................................................27200.2040400000000
.....................................................................................................................................................................................................................................................TGTTGCCGCA----------TGGGCATGTGCCCCTT......................................................................................................................26200.2040400000000
.............................................................................................................................................AGGTTAGGTTAGGTTAAGGCG.............................................................................................................................................................................................................................................21200.2040400000000
..............................................................................................................................................................................................................................................................................ATGTGCCCCTTCGCG--------------------------TTGCC...................................................................................20200.2040300001000
.............................................................................................................................................AGGTTAGGTTAGGTTAAGGC..............................................................................................................................................................................................................................................20200.2040400000000
...........................................................................................................................................TTAGGTTAGGTTAGGTTAAGGCGG............................................................................................................................................................................................................................................24190.1630100000200
........................................................................................................................................................................................................................................................TGCCGCA----------TGGGCATGTGCCCCTTCG....................................................................................................................25200.1530300000000
..............................................................................................................................................................................................................................................................................ATGTGCCCCTTCGCG--------------------------TTGCCC..................................................................................21200.1530300000000
...........................................................................................................................................................................................................................................................................GGCATGTGCCCCTTCGCG--------------------------TTG.....................................................................................21200.1530300000000
................................................................................................................................................................................................................................................CGTTGTGTTGCCGCA----------TGGGCATG..............................................................................................................................23200.1530300000000
.................................................................................................................................................................................................................................................................................TGCCCCTTCGCG--------------------------TTGCCCGAACCG............................................................................24200.1530300000000
...................................................................................................................................................................................................................................................TGTGTTGCCGCA----------TGGGCATGTGC...........................................................................................................................23200.1530000300000
......................................................................................................................................................TAGGTTAAGGCGGTAGCCGGGAG..................................................................................................................................................................................................................................23200.1530300000000
.....................................................................................................................................................................................................................................................TGTTGCCGCA----------TGGGCATGTGC...........................................................................................................................21200.1530300000000
.................................................................................................................................................TAGGTTAGGTTAAGGCGGTAGCCGGGA...................................................................................................................................................................................................................................27200.1530000000030
.....................................................................................................................................T-----TTAGGTTAGGTTAGGTTAA.................................................................................................................................................................................................................................................2070.1410100000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGCA----------T.....................................................................................................................................27160.1320200000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGC.................................................................................................................................................25170.1220200000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGC....................................................................................................................................................22170.1220110000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTT......................................................................................................................................................20180.1120200000000
.........................................................................................................................................................................................................................................................................TGGGCATGTGCCCCTTCGCG--------------------------TTG.....................................................................................23200.1020200000000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGG...................................................................................................................................20200.1020000100010
...................................................................................................................................................................................................................................................TGTGTTGCCGCA----------TGGGCATG..............................................................................................................................20200.1020200000000
..........................................................................................................................................................TTAAGGCGGTAGCCGGGAGGGG...............................................................................................................................................................................................................................22200.1020200000000
.................................................................................................................................................TAGGTTAGGTTAAGGCGGTAGC........................................................................................................................................................................................................................................22200.1020100001000
..........................................................................................................................................................................................................TCCCGCCCCC--AAGCTCACTTGGAA...........................................................................................................................................................................24200.1020200000000
............................................................................................................................................TAGGTTAGGTTAGGTTAAGGCGGTA..........................................................................................................................................................................................................................................25200.1020100000010
.......................................................................................................................................................................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTTCGA.23200.1020200000000
.........................................................................................................................................................................................................................................................................TGGGCATGTGCCCCTTCGCG--------------------------TTGC....................................................................................24200.1020100001000
.......................................................................................................................................................................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGA.....19200.1020000000200
................................................................................................................................................TTAGGTTAGGTTAAGGCGG............................................................................................................................................................................................................................................19200.1020200000000
................................................................................................................................................TTAGGTTAGGTTAAGGCGGTAGC........................................................................................................................................................................................................................................23200.1020000101000
.................................................................................................................................................TAGGTTAGGTTAAGGCGG............................................................................................................................................................................................................................................18200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTTC...21200.1020200000000
...............................................................................................................................................GTTAGGTTAGGTTAAGGCGGTA..........................................................................................................................................................................................................................................22200.1020000000020
.................................................................................................................................................TAGGTTAGGTTAAGGCGGTAGCCGGG....................................................................................................................................................................................................................................26200.1020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTT....20200.1020200000000
.................................................................................................................................................TAGGTTAGGTTAAGGCGGTAG.........................................................................................................................................................................................................................................21200.1020100000100
...............................................................................................................................................................................................................................................CCGTTGTGTTGCCGCA----------TGGGCA................................................................................................................................22200.1020200000000
........................................................................................................................................................................................................................................................TGCCGCA----------TGGGCATGTGCCCCTTC.....................................................................................................................24200.1020200000000
...........................................................................................................................................................TAAGGCGGTAGCCGGGAGGG................................................................................................................................................................................................................................20200.1020200000000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCATGTT............................................................................................................................27200.1020200000000
................................................................................................................................................................................................................................................................................GTGCCCCTTCGCG--------------------------TTGCCCG.................................................................................20200.1020101000000
.........................................................................................................................................................................................................................................................................TGGGCATGTGCCCCTTCGCG--------------------------TT......................................................................................22200.1020200000000
...................................................................................................................................................................................................................................................................................CCCCTTCGCG--------------------------TTGCCCGAACCGT--------------------------GA...............................................25200.1020200000000
..........................................................................................................................................................................................................................................AAGGTCCGTTGTGTTGCCGCA----------TGGGCA................................................................................................................................27150.0710000001000
......................................................................................................................................................................................................................................ATAAAAGGTCCGTTGTGTTGCCGCA----------......................................................................................................................................25160.0610100000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCCGCA----------TG....................................................................................................................................28160.0610100000000
.......................................................................................................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCGCA----------TGGG..................................................................................................................................28170.0610100000000
.......................................................................................................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCGCA----------TG....................................................................................................................................26170.0610100000000
.........................................................................................................................................................................................................................................AAAGGTCCGTTGTGTTGCCGCA----------TGGG..................................................................................................................................26170.0610100000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGA....................................................................................................................................................22180.0610100000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTG.....................................................................................................................................................21180.0610100000000
.......................................................................................................................................................................................................................................TAAAAGGTCCGTTGTGTTGCC...................................................................................................................................................21180.0610000000100
.......................................................................................................................................................................................................................................TAAAAGGTCCGTTGTGTTGCCG..................................................................................................................................................22180.0610100000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGCAA..................................................................................................................................................24180.0610010000000
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGT.......................................................................................................................................................19180.0610100000000
......................................................................................................................................................................................................................................ATAAAAGGTCCGTTGTGTTG.....................................................................................................................................................20180.0610100000000
........................................................................................................................................................................................................................................AAAAGGTCCGTTGTGTTG.....................................................................................................................................................18190.0510100000000
.......................................................................................................................................................................................................................................TAAAAGGTCCGTTGTGTTG.....................................................................................................................................................19190.0510100000000
...........................................................................................................................................TTAGGTTAGGTTAGGTTAAGGC..............................................................................................................................................................................................................................................22190.0510000000100
.....................................................................................................................................................................................................................................TATAAAAGGTCCGTTGTGTTGT....................................................................................................................................................22190.0510000001000
...........................................................................................................................................................TAAGGCGGTAGCCGGGAGG.................................................................................................................................................................................................................................19200.0510100000000
...........................................................................................................................................................................................................................................................................GGCATGTGCCCCTTCGCG--------------------------TTGC....................................................................................22200.0510100000000
..............................................................................................................................................................................................................................................................A----------TGGGCATGTGCCCCTTCGCG--------------------------TTGCC...................................................................................26200.0510100000000
.....................................................................................................................................................................................................................................................TGTTGCCGCA----------TGGGCATGTGCCCCT.......................................................................................................................25200.0510100000000
.................................................................................................................................................................................................................CCC--AAGCTCACTTGGACCTAT.......................................................................................................................................................................21200.0510100000000
.............................................................................................................................................................................................................................................GTCCGTTGTGTTGCCGCA----------TG....................................................................................................................................20200.0511000000000
............................................................................................................................................TAGGTTAGGTTAGGTTAAGGCGGTAG.........................................................................................................................................................................................................................................26200.0510100000000
................................................................................................................................................................................................................................................................................GTGCCCCTTCGCG--------------------------TTGCCCGA................................................................................21200.0510100000000
...........................................................................................................................................................TAAGGCGGTAGCCGGGAGGGG...............................................................................................................................................................................................................................21200.0510100000000
................................................................................................................................................................................................................................................CGTTGTGTTGCCGCA----------TGGGCATGTG............................................................................................................................25200.0510100000000
.......................................................................................................................................................................................................................................................TTGCCGCA----------TGGGCATGTGCCCCTTCGT...................................................................................................................27200.0510100000000
.......................................................................................................................................................................................................................................................TTGCCGCA----------TGGGCATGTGCCC.........................................................................................................................21200.0510100000000
.........................................................................................................................................................................................................................................................................TGGGCATGTGCCCCTTCGCG--------------------------TTGCCC..................................................................................26200.0510100000000
............................................................................................................................................................................................................................................................................GCATGTGCCCCTTCGCG--------------------------TTG.....................................................................................20200.0510100000000
................................................................................................................................................TTAGGTTAGGTTAAGGCGGTAGCCGG.....................................................................................................................................................................................................................................26200.0510100000000
............................................................................................................................................................AAGGCGGTAGCCGGGAGGGG...............................................................................................................................................................................................................................20200.0510100000000
...........................................................................................................................................................................................................................................................CGCA----------TGGGCATGTGCCCCTT......................................................................................................................20200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCATTTACAGTCGCTGAG......20200.0510000000010
.................................................................................................................................................TAGGTTAGGTTAAGGCGGTAGCCGG.....................................................................................................................................................................................................................................25200.0510100000000
.......................................................................................................................................................................................................................................................................................TTCGCG--------------------------TTGCCCGAACCGT--------------------------GAAA------------.................................23200.0510100000000
.............................................................................................................................................................................................................................................GTCCGTTGTGTTGCCGCA----------TGGGCATGG.............................................................................................................................27200.0510100000000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCATGTGC...........................................................................................................................28200.0510000100000
.......................................................................................................................................................................................................................................................................................................................................................................................TCATTTACAGTCGCTGAGTTCG..22200.0510100000000
........................................................................................................................................................................................................................................................TGCCGCA----------TGGGCATGTGCCCCTT......................................................................................................................23200.0510100000000
................................................................................................................................................TTAGGTTAGGTTAAGGCGGTAG.........................................................................................................................................................................................................................................22200.0510000000010
......................................................................................................................................................................................................................................................................................CTTCGCG--------------------------TTGCCCGAACCGT--------------------------G................................................21200.0510100000000
............................................................................................................................................................................................................................................GGTCCGTTGTGTTGCCGCA----------TGGGCATGT.............................................................................................................................28200.0510100000000
.............................................................................................................................................................................................................................................................................CATGTGCCCCTTCGCG--------------------------TTGCCCGAAC..............................................................................26200.0510100000000
........................................................................................................................................................................................................................................................TGCCGCA----------TGGGCATGTGCCCCT.......................................................................................................................22200.0510100000000
...............................................................................................................................................................................................................................................................................TGTGCCCCTTCGCG--------------------------TTGCCCGAACA.............................................................................25200.0510100000000
..........................................................................................................................................................................................................TCCCGCCCCC--AAGCTCACTTGGAC...........................................................................................................................................................................24200.0510010000000
...............................................................................................................................................................................................................................................CCGTTGTGTTGCCGCA----------TGGGCAT...............................................................................................................................23200.0510100000000
......................................................................................................................................................TAGGTTAAGGCGGTAGCCGGGAGGGGGT.............................................................................................................................................................................................................................28200.0510000000100
......................................................................................................................................................TAGGTTAAGGCGGTAGCCGGGAGGGG...............................................................................................................................................................................................................................26200.0510100000000
.......................................................................................................................................................................................................................................................TTGCCGCA----------TGGGCATGTGCCCCTTCG....................................................................................................................26200.0510100000000
...........................................................................................................................................................TAAGGCGGTAGCCGGGAG..................................................................................................................................................................................................................................18200.0510100000000
.....................................................................................................................................................TTAGGTTAAGGCGGTAGCCGGG....................................................................................................................................................................................................................................22200.0510100000000
..............................................................................................................................................................................................................................................................A----------TGGGCATGTGCCCCTTCGC...................................................................................................................20200.0510100000000
......................................................................................................................................................................................................................................................................................................................................................................................GTCATTTACAGTCGCTGAG......19200.0510000000010
................................................................................................................................................................................................................................................CGTTGTGTTGCCGCA----------TGGGCA................................................................................................................................21200.0510100000000
.....................................................................................................................................................................................................................................................................................CCTTCGCG--------------------------TTGCCCGAACCGT--------------------------.................................................21200.0510100000000
............................................................................................................................................................................................................................................................................................................................................................................................TACAGTCGCTGAGTTCGAC19200.0510000010000
..................................................................................................................................................................................................................................................TTGTGTTGCCGCA----------TGGGCATGTGCCCCT.......................................................................................................................28200.0510100000000
.....................................................................................................................................................................................................................................................TGTTGCCGCA----------TGGGCATGTGCC..........................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................TGTTGCCGCA----------TGGGCATGTGCCCCTTC.....................................................................................................................27200.0510100000000
................................................................................................................................................................................................................................................................................GTGCCCCTTCGCG--------------------------TTGCCC..................................................................................19200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATTTACAGTCGCTGAGTTCGG.21200.0511000000000
..........................................................................................................................................................................................................................................................CCGCA----------TGGGCATGTGCCCC........................................................................................................................19200.0511000000000
................................................................................................................................................................................................................................................CGTTGTGTTGCCGCA----------TGGG..................................................................................................................................19200.0510000001000
.......................................................................................................................................................................................................................................................TTGCCGCA----------TGGGCATGTGCCCCT.......................................................................................................................23200.0510100000000
.......................................................................................................................................................................................................................................................................................TTCGCG--------------------------TTGCCCGAACCGT--------------------------GA...............................................21200.0510100000000
......................................................................................................................................................TAGGTTAAGGCGGTAGCCGGGAGG.................................................................................................................................................................................................................................24200.0510100000000
...........................................................................................................................................................TAAGGCGGTAGCCGGGAGGGGG..............................................................................................................................................................................................................................22200.0510100000000
............................................................................................................................................................................................................................................................................GCATGTGCCCCTTCGCG--------------------------TTGC....................................................................................21200.0510000000010
......................................................................................................................................................TAGGTTAAGGCGGTAGCCGGGA...................................................................................................................................................................................................................................22200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................AGTCATTTACAGTCGCTGAGT.....21200.0510000010000
...................................................................................................................................................................................................................................................TGTGTTGCCGCA----------TGGGCATGTG............................................................................................................................22200.0510100000000
.....................................................................................................................................................TTAGGTTAAGGCGGTAGCCGG.....................................................................................................................................................................................................................................21200.0510100000000
............................................................................................................................................................................................................................................GGTCCGTTGTGTTGCCGCA----------TGGGCATG..............................................................................................................................27200.0510100000000
.............................................................................................................................................................................................................................................................CA----------TGGGCATGTGCCCCTTCGCG--------------------------TTG.....................................................................................25200.0510100000000
.....................................................................................................................................................................................................................................................TGTTGCCGCA----------TGGGCATGTGCCCC........................................................................................................................24200.0510010000000
..................................................................................................................................................................................................................................................................................GCCCCTTCGCG--------------------------TTGCCCGAACCGT--------------------------.................................................24200.0510100000000
.................................................................................................................................................................................................................................................GTTGTGTTGCCGCA----------TGGGCATG..............................................................................................................................22200.0510100000000
.....................................................................................................................................................TTAGGTTAAGGCGGTAGCCGGGAGG.................................................................................................................................................................................................................................25200.0510100000000
..............................................................................................................................................................................................................................................TCCGTTGTGTTGCCGCA----------TGGGCATGG.............................................................................................................................26200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATTTACAGTCGCTGAGTTC...19200.0510100000000
.............................................................................................................................................................................................................................................GTCCGTTGTGTTGCCGCA----------......................................................................................................................................18200.0510100000000
.........................................................................................................................................................................................................................................................................TGGGCATGTGCCCCTTCGCG--------------------------TTGCC...................................................................................25200.0510100000000
...................................................................................................................................................................................................................................................................................CCCCTTCGCG--------------------------TTGCCCGAACCGT--------------------------G................................................24200.0510100000000
droPer2
GAAGAT-AAATACATGTC--------------------------CCGCAGACATACGAACAAAA---------ATATGAAAAGTTAACAGAAAAGACAGTGGCTGAGATCT-ACGA-ATAAATTAATG-----G-AGGGTATGGTTAGGTTAGGTTAAGGCGGTAGCCG--------GGAGG-G----GGAGATAAAGAAACCCCCGCCCCCCAAAGCTCTCTGGGACCTATAAGAGGAACATTGTGTTGCCGCA----------TGGGCAACTGCCCCTTCTCG--------------------------CTGCCTG------------------------------------------------------------------------AAACCGTGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................TTAGGTTAAGGCGGTAGCC.......................................................................................................................................................................................................................................19200.051010000
droWil2
ACATT--ATATGCAGGACGACGAGTTGAGCAGTAAGAGCCAACCG------------GGCAATTGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACTCT--ATATGCAAGGCGCTGAGTCAATTGCACAGACTCTGCCT------------GGCAATTGTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................CGCTGAGTCAATTGCACAGACT........................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.................................CAGACTCTGCCT------------GGCAATTG..............................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droGri2
TCAAT--CTTCCAATG------------------------------------------------G----------------------------------------------------------------------TAAGATAGGTTAGGTTAGGTTATATCGGCTGTCA--------GCCCGGTAGGCTG--------------------------ACACACTT-----------AGGCCCGTTGTGTTACCGAAAAAGGGGATCTAGGGATTTCCTCCT--GCA----------------------GTCGTGCCTTCAGC----------ATTCCAACATATATTT---AAAT------------TTGCGGCAGCTTGTTACTGATATCGAATTGGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TGCAA--ACAGACAACCAGACAAACGGA---------CACACACT------------GGCATTTTGAAGAAGAAGAA-----------------AACATCGA-A----------------T--T---------T-----TTTGAATAGGTTAAGTTAGGGTGAT-GCTAGGGGGACTTA--------------G-AAGACCCCCCCGCTT--------CCACTTGAGCCGCT--AGGGCTCCTTGTGTTACCGCT----------AGGGCAAGGGTTTCACCGAA--------------------------GTGCTTCTCCTAGGTAGAGGA----AGCATCTCGTTGAGAGAT------------CTGCGACAATCATTGACTGTCCTGGAGTTGGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................GAGAT------------CTGCGACAATCATTGACTGTCC...........272032.5065046451000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGACTG..............27203.8577531014000
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTGACTGTCC...........28203.70740740000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACTGTCC...........29203.55711700000
.............................................................................................................................................................................................................................................................................................................................................................GAGAT------------CTGCGACAATCATTGACTGT.............25203.55716605000
.............................................................................................................................................................................................................................................................................................................................................................GAGAT------------CTGCGACAATCATTGACTGTC............26202.45490490000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGACT...............26202.004010291000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACTGT.............27201.75355246000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACTG..............26201.60322156000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGAC................25201.40282701000
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTGACTGT.............26201.00201181000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACT...............25200.75154110000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGACC...............26200.50100100000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGACTGT.............28200.50100100000
......................................................................................................................................................................................................................................................................................................................................................TCGTTGAGAGAT------------CTGCGACAATCATT...................26200.459450000
.........................................................................................................................................................................................................................................................................................................................................................TTGAGAGAT------------CTGCGACAATCATTGACTG..............28200.459801000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACTGTC............28200.408080000
....................................................................................................................................................................................................................................................................................................................................................TCTCGTTGAGAGAT------------CTGCGACAATCATT...................28200.357520000
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTGACTGTC............27200.306240000
.............................................................................................................................................................................................................................................................................................................................................................GAGAT------------CTGCGACAATCATTGACTGTCCT..........28200.306240000
.......................................................................................................................................................................................................................................T--AGGGCTCCTTGTGTTACCGCT----------AGG...................................................................................................................................2570.292200000
.............................................................................................................................................................................................................................................................................................................................................................GAGAT------------CTGCGACAATCATTGACTG..............24200.255131000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACC...............25200.255050000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGA.................24200.255230000
.......................................................................................................................................................................................................................................................................................................................................................................................TCATTGACTGTCCTGGAGTTGGA.23200.204400000
.................AGACAAACGGA---------CACACACT------------GGCATT................................................................................................................................................................................................................................................................................................................................................2550.201010000
...............................................................................................................................................................................................................................................................................................................................................................GAT------------CTGCGACAATCATTGACTGTCC...........25200.204040000
.........................................................................................................................................................................................................................................................................................................................................................TTGAGAGAT------------CTGCGACAATCATTGAC................26200.204400000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGAC................24200.204400000
................................................................................................................................................................................................................................................................................................................................................................AT------------CTGCGACAATCATTGACTG..............21200.204200002
.....................................................................................................................................................................................................................................................TGTTACCGCT----------AGGGCAAGGGTTTCACC.....................................................................................................................2760.171100000
..................................................................................................TCGA-A----------------T--T---------T-----TTTGAATAGGTTAAGT....................................................................................................................................................................................................................................................2460.171100000
.............................................................................................................................................................................GACTTA--------------G-AAGACCCCCCCGCTT--------CC...................................................................................................................................................................................2460.171100000
...................................................................................................................................................................................................................................................TGTGTTACCGCT----------AGGGCAAGGGTT..........................................................................................................................2460.171100000
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTGACTG..............25200.153201000
......................................................................................................................................................................................................................................................................................................................................................TCGTTGAGAGAT------------CTGCGACAATCAT....................25200.153300000
.......ACAGACAACCAGACAAACGGA---------CACACAC...................................................................................................................................................................................................................................................................................................................................................................2880.131010000
....A--ACAGACAACCAGACAAACGGA---------CACA......................................................................................................................................................................................................................................................................................................................................................................2690.111100000
...............................................................................................................................................................................................................................................................................................................................................................................TGCGACAATCATTGACTGTCCTGGAGT.....27200.102200000
.........................................................................................................................................................................................................................................................................................................................................................TTGAGAGAT------------CTGCGACAATCATTGACTGT.............29200.102110000
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTGACT...............24200.102110000
.......................................................................................................................................................................................................................................................................................................................................................................................TCATTGACTGTCCTGGAGTTGGAC24200.102200000
.........................................................................................................................................................................................................................................................................................................................................................TTGAGAGAT------------CTGCGACAATCAT....................22200.102110000
.................................................................................................................................................................................................................T--------CCACTTGAGCCGCT--AGGG.................................................................................................................................................................19200.102000002
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATT...................21200.102200000
.................................................................................................................................................................................................................................................................................................................................................................T------------CTGCGACAATCATTGACTGT.............21200.102000002
.......................................................................................................................................................................................................................................................................................................................................................CGTTGAGAGAT------------CTGCGACAATCATT...................25200.102110000
...................................................................................................................................................................................................................................................................................................................................................................................ACAATCATTGACTGTCCTGGAGTTGGA.27200.102000002
..................................................................................................................................................................................................................................................................................................................................................................................GACAATCATTGACTGTCC...........18200.102020000
......................................................................................................................................................................................................................................................................................................................................................................................ATCATTGACTGTCCTGGAGTT....21200.051000001
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGACTT..............27200.051001000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTG..................23200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................CGACAATCATTGACTGTCCTGT........22200.051000001
.........................................................................................................................................................................................................CCCCCGCTT--------CCACTTGAGCCGCT--AGGGCT...............................................................................................................................................................29200.051000001
................................................................................................................................................................................................................TT--------CCACTTGAGCCGCT--AGGGCTCCTT...........................................................................................................................................................26200.051100000
............................................................................................................................................................................................................CCGCTT--------CCACTTGAGCCGCT--A....................................................................................................................................................................21200.051000001
....................................................................................................................................................................................................................................................................................................................................................TCTCGTTGAGAGAT------------CTGCGACAATCAT....................27200.051010000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACTGTCT...........29200.051010000
.............................................................................................................................................................................................................CGCTT--------CCACTTGAGCCGCT--AGGGCTCCTT...........................................................................................................................................................29200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................TGCGACAATCATTGACTGTCC...........21200.051010000
.........................................................................................................................................................................................................................................................ACCGCT----------AGGGCAAGGGTTTCACCGAA--------------------------G.......................................................................................27200.051100000
.............................................................................................................................................................................................................................................................................................................................................................GAGAT------------CTGCGACAATCATTGAC................22200.051010000
..............................................................................................................................................................................................................................................................T----------AGGGCAAGGGTTTCACCGAA--------------------------GTG.....................................................................................24200.051100000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGA.................23200.051001000
..........................................................................................................................................................................................................CCCCGCTT--------CCACTTGAGCCGCT--A....................................................................................................................................................................23200.051000001
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTGAC................23200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................ATCATTGACTGTCCTGGAGTTGG..23200.051100000
...............................................................................................................................................................................................................................................................................................................................................................GAT------------CTGCGACAATCATTGACTGT.............23200.051100000
.....................................................................................................................................................................................................................................................................................................................................................CTCGTTGAGAGAT------------CTGCGACAATCATT...................27200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................CGACAATCATTGACTGTCCTGGA.......23200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................ATCATTGACTGTCCTGGAGT.....20200.051100000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTG..................22200.051100000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCATTGACTT..............26200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................AATCATTGACTGTCCTGGAGTTGG..24200.051100000
........................................................................................................................................................................................................................................................................................................................................................................................CATTGACTGTCCTGGAGTTGG..21200.051100000
..........................................................................................................................................................................................................CCCCGCTT--------CCACTTGAGCCGC........................................................................................................................................................................21200.051100000
...................................................................................................................................................................................................................................................................................................................................................................................ACAATCATTGACTGTCCTGGAGTTG...25200.051100000
....................................................................................................................................................................................................................................................................................................................................................TCTCGTTGAGAGAT------------CTGCGACAATCA.....................26200.051100000
........................................................................................................................................................................................................................................................TACCGCT----------AGGGCAAGGGTTTC........................................................................................................................21200.051100000
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTGACC...............24200.051010000
...............................................................................................................................................................................................................................................................................................................................................................GAT------------CTGCGACAATCATTGACTGTCCT..........26200.051010000
.........................................................................................................................................................................................................................................................................................................................................................TTGAGAGAT------------CTGCGACAATCATTGA.................25200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................CAATCATTGACTGTCCTGGAGTTG...24200.051010000
...........................................................................................................................................................................................................................................................................................................................................................GAGAGAT------------CTGCGACAATCAT....................20200.051010000
.............................................................................................................................................................................................................................................................................CAAGGGTTTCACCGAA--------------------------GTGCT...................................................................................21200.051100000
............................................................................................................................................................................................................................................................................................................................................................AGAGAT------------CTGCGACAATCATTG..................21200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................ACAATCATTGACTGTCCTGG........20200.051100000
..........................................................................................................................................................................................................................................................................................................................................................TGAGAGAT------------CTGCGACAATCATTGACTA..............27200.051100000
......................................................................................................................................................................................................................................................................................................................................................TCGTTGAGAGAT------------CTGCGACAATCAA....................25200.051100000
droBip1
TGGTT--GCGAAG-----------------------AATCCTTACCGTA------------AAAG---------------------------------TTGG-TAA---AG-TTAA-AGAT--GAGTACCAGGT-----ATAGGTTAGGTTAGGTTGAGGCGGCGATGC--GGTGCCAGTCA-T----TG----------CCACCGGCAT--------CCACTCGAGCCGCT--GGGACTCCTTGTGATACCGCA----------CAGGCAAGTGGTCCT-----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACACT--ATATGCAGGGCGACGAGCTGAGCGCCGAGAGCCAGCCC------------GGCAATGGTAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCTCT--ACATGCAGAGCGACGAGCTGAGGGCGGAGAGTCAGCCT------------GCCAATTGTAAGATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAAAA--ATAATA---------------------------------------------------------------------------------------------------------------------------------GGTTAGGTTAGATTAGAGCAGCTGTCA--------AATTA-T----TG--------------------------ACACACTTGGACCTA--GAAGGTCCGTTGCGATACCGCG----------TGGATCTGTGTCCCCT----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
ATTGTCTACATGCC--AAGATGATCCAACACAAGGGGGTCATACA------------GGCATTACAAA--------------------------AACCTTGGCTAA---GG-TTCAAAGAC--A---------A-TAGGTTAGGATAGGTTAGGTTAGGACGGCTGCCA--------GACTA-TAGCCTG--------------------------GCACACTTAGACCTCT-GTGGGTCCATTGTGATACCGTA----------TG------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCACT--ACATGCAGGGCGACGAGCTGAGGGAGGACAACCAGCCA------------AGCAACTGTAGGAGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TA--------------------------------------------------------------------------------------------------------------------------------------------GGTTAGGTTAGATTAGAGCAGCTGTCA--------AATTA-T----TG--------------------------ACACACTTGGACCTA--GAAGGTCCGTTGCGATACCGCG----------TGGATCTGTGTCCCCT----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GCACT--ACATGCAGGGCGACGAGCTTAGAGAAGATAATCAGCCA------------GAAAACTGTAAGGATA-CAC-----------------------CATAAA---T------------------------------------------------------------------------------------------------------------ATATTTAAACCTTT------------------------------------------------A----------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
GTACT--ACATGCAGGGCGACGAGCAAAGTGAAGATAAGCAACCG------------GGCAGCTGTAAGAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............AGGGCGACGAGCAAAGTGAAGATAAGC.......................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CT--ACATGCAGGGCGACGAGCA.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
GTACT--ACATGCAGGGCGACGAG.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.........................AAAGTGAAGATAAGCAACCG------------GGCAGC................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................AAGTGAAGATAAGCAACCG------------GGC...................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AAGTGAAGATAAGCAACCG------------GG....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................AGCAAAGTGAAGATAAGC.......................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........TGCAGGGCGACGAGCAAAGTG................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
......................AGCAAAGTGAAGATAAGCAAC....................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......ACATGCAGGGCGACGAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....T--ACATGCAGGGCGACGAGCAAAGTGA...............................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CATGCAGGGCGACGAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AAAGTGAAGATAAGCAACCG------------G.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GTACT--ACATGCAGGGCGACGAGCAAAGGGAAGATAAGCAACCG------------GGCAACTGTAAGAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....T--ACATGCAGGGCGACGAGCAAAGGGAAGA............................................................................................................................................................................................................................................................................................................................................................................2911.00100000000100000000
droSec2
GTACT--ACATGCAGGGCGACGAGCAAAGGGAAGATAAGCAACCG------------GGCAACTGTAAGAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GCCAA--A----------------------------AACCAATCCCACAATAATATTAATATAA---------ATGT-----------------AACCTCAA-TAA---AT-TTGG-AAAA--A---------TTTACGTTAGGTTAGGTTAGGTTTTACCGGCCGTCG--------GTC--------CG--------------------------ACGCACTTAGACCATT-AGAAGTCCATTGTGATACCGTG----------TATGT--TTTCCCCTTTGCGCGTCGAGGTTCGTGTGAAGTTAGCAGTTTCCCCAGCCAG--------------------------AGGCTCTGGTGAATTTTTGTG----------------GC--------TTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................TAATATTAATATAA---------ATGT-----------------AACCTCAA-T.......................................................................................................................................................................................................................................................................................................2720.50101000000000
...........................................................TATAA---------ATGT-----------------AACCTCAA-TAA---AT-TTGG-A.........................................................................................................................................................................................................................................................................................2720.50101000000000
...........................................................................................................................................................................................................................................................................................................TGAAGTTAGCAGTTTCCCCAGCCAG--------------------------AGG..............................................28200.5010000000000010
.................................................................................................................................................TAGGTTAGGTTTTACCGGCCGTCG--------GTC--------C..................................................................................................................................................................................................................2850.40202000000000
...................................................................................................................................................................................C--------CG--------------------------ACGCACTTAGACCATT-AGAAG.................................................................................................................................................................2430.33101000000000
...........................................................................................................................................................................................................................................................................................................TGAAGTTAGCAGTTTCCCCAGCC.............................................................................23200.25505000000000
...........................................................................................................................................................................................................................................................................................................TGAAGTTAGCAGTTTCCCCAGCCA............................................................................24200.20403000010000
..................................................................................................................................................................................................................................................TTGTGATACCGTG----------TATGT--TTTCCCCT.......................................................................................................................26200.15303000000000
...........................................................................................................................................................................................................................................................................................................TGAAGTTAGCAGTTTCCCCAGCCAG--------------------------AG...............................................27200.15303000000000
............................................................................................................................................................................................................................................................................................................GAAGTTAGCAGTTTCCCCAGCC.............................................................................22200.10202000000000
.........................................................................................................................................................................................................................................................................................................TGTGAAGTTAGCAGTTTCCCCAGCC.............................................................................25200.10200000000002
..............................................................................................................................................................................................................................................TCCATTGTGATACCGTG----------TATGT--TTTCCCC........................................................................................................................29160.06100100000000
..............................................................................................................................................................................................................................................TCCATTGTGATACCGTG----------TATGT--TTTCC..........................................................................................................................27170.06101000000000
............................................................................................................................................TAGGTTAGGTTAGGTTTTACCGG............................................................................................................................................................................................................................................23200.05100100000000
.................................................................................................................................................................................................................................................................................................................TAGCAGTTTCCCCAGCCA............................................................................18200.05101000000000
...........................................................................................................................................................................................................................................................................................................TGAAGTTAGCAGTTTCCCCAG...............................................................................21200.05101000000000
...............................................................................................................................................................................................................................................................................................TCGAGGTTCGTGTGAAGTTAGCAGT.......................................................................................25200.05101000000000
..................................................................................................................................................................................................................................................TTGTGATACCGTG----------TATGT--TTTCCCC........................................................................................................................25200.05101000000000
..............................................................................................................................................................................................................................................TCCATTGTGATACCGTG----------TATGT--TT.............................................................................................................................24200.05101000000000
.................................................................................................................................................................................................................................................................................................................TAGCAGTTTCCCCAGCCAG--------------------------AGGC.............................................23200.05101000000000
.........................................................................................................................................................................................................................................................................................................TGTGAAGTTAGCAGTTTCCCCAGC..............................................................................24200.05100010000000
..................................................................................................................................................................................................................................................TTGTGATACCGTG----------TATGT--TTT............................................................................................................................21200.05100000000001
droEre2
GTACT--ACATGCAGGACGACGATCAAGGGGAAGATAAGCTACCG------------GGCAACTGTAAGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................GACGATCAAGGGGAAGATA..........................................................................................................................................................................................................................................................................................................................................................................1911.0010100000

Generated: 05/18/2015 at 12:07 AM