ID:

dps_1099

 Coordinate:

3:8384122-8384241 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.8 -18.6 -18.6

Flybase annnotation

exon [dpse_GLEANR_15649:10]; exon [dpse_GLEANR_15649:9]; CDS [Dpse\GA10023-cds]; CDS [Dpse\GA10023-cds]; intron [Dpse\GA10023-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. XL_group1e:8944443-8944463 +
  2. XL_group3b:83700-83720 +
  3. 3:2473056-2473076 +
  4. 3:6002219-6002239 +
  5. dps_1099  3:8384141-8384161 +
  6. 3:14332799-14332819 +
  7. 2:1044995-1045015 +
  8. 2:2662664-2662684 +
  9. 2:2762466-2762486 +
  10. 2:7931354-7931374 +
  11. 2:10921665-10921685 +
  12. 2:16958853-16958873 +
  13. 2:17439092-17439112 +
  14. 2:22933881-22933901 +
  15. 2:29929656-29929676 +
  16. 4_group1:4366706-4366726 +
  17. 4_group3:6679918-6679938 +
  18. 4_group4:3356525-3356545 +
  19. XL_group1a:2255349-2255369 +
  20. XL_group1a:3269909-3269929 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------##################################################
CAGCAGCAACAGCAGACTCACCAGCAACAGCAACAGCAGACTCACCAACAGCAGCAGCAGCAACAGACTCACCAACAGCAGCAGCAGCAGCAGACTCACCAACAGCAGCAGGTAACTACAACCCCTGGAGAGCTGTGTTCCAACCCCCAGCTAAAGCTTTCACCGCTTATCTCGCAGATGGCTCCGCCGACTCCATCGCAGCAGCAGCAGCAGGAAGGAC
**************************************************((.((.((.((................)).)).)).)).((((.(((.(((........((....))........))).))))))).................((((.......))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916
embryo
 V112
male body		 M040
female body
 M059
embryo
 SRR902011
testis
..........................................CACCAACAGCAGCAGCAGCAAC............................................................................................................................................................ 22 0 7 0.14 1 0 1 0 0 0
......................................................................................................................................................CTAAACCTTTCACCGTTT.................................................... 18 2 7 0.14 1 1 0 0 0 0
............................................CCAACAGCAGCAGCAGCAA............................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0
.....................................................................CACCAACAGCAGCAGCAGCAG.................................................................................................................................. 21 0 20 0.05 1 0 0 0 0 1
.............................................CAACAGCAGCAGCAGCAACAG.......................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
............................................CCAACAGCAGCAGCAGCAAC............................................................................................................................................................ 20 0 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GTCGTCGTTGTCGTCTGAGTGGTCGTTGTCGTTGTCGTCTGAGTGGTTGTCGTCGTCGTCGTTGTCTGAGTGGTTGTCGTCGTCGTCGTCGTCTGAGTGGTTGTCGTCGTCCATTGATGTTGGGGACCTCTCGACACAAGGTTGGGGGTCGATTTCGAAAGTGGCGAATAGAGCGTCTACCGAGGCGGCTGAGGTAGCGTCGTCGTCGTCGTCCTTCCTG
**************************************************((.((.((.((................)).)).)).)).((((.(((.(((........((....))........))).))))))).................((((.......))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M022
male body		 SRR902012
CNS imaginal disc
 V112
male body		 SRR902010
ovaries
.........................................................................................................................................................TACGAAAGTCGCAAATAGAG............................................... 20 3 9 3.44 31 27 3 0 1 0
...........................................................................................................................................................CGAAAGTCGCAAATAGAG............................................... 18 2 6 1.83 11 11 0 0 0 0
...........................................................................................................................................................CGAAAGTCGCCAATAGGGC.............................................. 19 3 12 0.75 9 9 0 0 0 0
...........................................................................................................................................................CGAAAGTCGCGAATAGGG............................................... 18 2 3 0.33 1 0 0 1 0 0
......................................................................................CGTCGTTTCAGTGGTTGTCG.................................................................................................................. 20 2 4 0.25 1 1 0 0 0 0
......................................................................TGGTTATCGTCGTCGTCGTCGTCT.............................................................................................................................. 24 1 17 0.18 3 3 0 0 0 0
..............................................TTGACGTCGACGTCGTTGTGTGA....................................................................................................................................................... 23 3 6 0.17 1 1 0 0 0 0
.....................................................................................CCGTCGTTTCAGTGGTTGTCG.................................................................................................................. 21 3 19 0.16 3 3 0 0 0 0
............................................................................................................................................GTTAGGGGTTGATTTCGA.............................................................. 18 2 17 0.06 1 0 0 0 0 1
.........................................................GTCTTTGTCTGAGTGGTC................................................................................................................................................. 18 2 19 0.05 1 1 0 0 0 0
...........................................................................................................................................................CGAAAGTCGCCAATAGAGA.............................................. 19 3 20 0.05 1 0 0 0 1 0
...GGCGTTGTCTTCCGAGTGG...................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
...........................GGCGTTGTCTTCCGAGTGG.............................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:8384072-8384291 + dps_1099 CAGCAGCAACAGCAGACTCAC------------CAGCAACAGCAACA------------------GCAGACTCAC------------------------------------------CAACAGC---AGCAGC---------------A------------GCAACAGAC---------------------------TCACCAACAGCAGCAGCAGCAGCAG---ACTCA------------------------------------C------------CAAC------AGC---AGCAGGTAACTA-----CAA----------------CCCCTGG----AGAG-C----------------TGTGTTCCAACCCCCAGCTAAAGCTTTC------ACCGCTTATCT------------------CG---------CAGATGGCTCCGCCGACTCCATCGCAG---------------------------------------------------------------------CAGCAGCA---------GCAGGAAGG-AC
droPer2 scaffold_4:2265601-2265823 + dpe_1577 CAGCAGCAACAGCAGACTCAC------------CAGCAACAGCAACA------------------GCAGACTCAC------------------------------------------CAACAGCAGCAGCAGC---------------A------------GCAACAGAC---------------------------TCACCAACAGCAGCAGCAGCAGCAG---ACTCA------------------------------------C------------CAAC------AGC---AGCAGGTAACTA-----CAA----------------CCCCTGG----AGAG-C----------------TTTATTCCAACCCCCAGCTAAAGCTTTC------ACCGCTTATCT------------------CG---------CAGATGGCTCCGCCGACCCCATCGCAG---------------------------------------------------------------------CAGCAGCA---------GCAGGAAGG-AC
droWil2 scf2_1100000004943:13030480-13030687 + CAACAGCAGCAACATAGCCAA------------CAGCAGCAGCA---------------------------TGGC------------------------CAACAGCAGCATAAC---CAACAGC---AGCAAC---------------A------------TCATCATTC---------------------------AC---AGCA---GCAGCAGCAGCAA---CACAG------------------------------------C------------CAAC------AGCAACAACA---------A---CAACAGCA---------TAT----G-----------TATCATGCTGCTGCAG------------------------------------------------TTGCTGCACATCAGCAACAGTTGC-------TGCAACATCAACGCCATC--------------------------------------------------------------------AGCAGCAGCAACA---------GCAGCAGCA-GC
droVir3 scaffold_12970:6992282-6992469 + CAGCAGCAGCAACAGCACCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCAA---------CAGCAGCAGCAA---------CAGCAACA---GCAGCAGCAGCAG---GTGAA------------------------------------C------------AGCC------AGG---TGCAGAC----------------------------------------------GACGAGCG--------CGTATTCCATA-C------ACGGCTAT----------------C----ATTCAACT---AGTCCA---------CAGACG------CAGTCGCCCAGCCAG---------------------------------------------------------------CAG---CAGGTGCA---------GCAGGC--G-GG
droMoj3 scaffold_6308:134010-134231 - CAGCAGCAACAGCAGCAGCAG------------CAGCAACAGCAACA------------------G------CAG------------------------------------------CAACAAC---------AGCAGCAGCAACAGCA------------GCAGCAGCA------------------A---------CAGCAACA---GCAGCAGCAGCAATTGACGCA------------------------------------A------------CAGC------AAC---AGCTGA--------CTG------------------------------CG-GCT----------------GCTGCCGCCC-----------------------------------------------AGCAGG--------C-------C---------------------GCTCTCGCCGTCACCGCCTCGAAGGTCGGCGTCACCACCGATGGCCAGGCCAAG---------------CTGCAGCAGAAGGTGGTGCA-GAAGG-TG
droGri2 scaffold_15110:17213198-17213403 + CAGCAGCAACAGCAGCAACAG------------CAGCAACAGCAGCA------------------G------CAG------------------------------------------CAACAGC---------AGCAACAGCAACA---------------GCAGCAGCA---------------------------GCAGCAGCA---ACAACAGCAGCAG---AAGCA------------------------------------A------------CAAC------AAC---AGCAGCTGCAA-C--AGCAA----------------CAAATTG----AG------------------------AAACAACAGTCAGCCAA---TTT-------------------GGTT---------------------------------------------------GTTTCCATTGCCACCGTA----------GCGC--------------------CGCAACTCCAACAA---CAACAGCA---------GCAGTC--A-AT
droAna3 scaffold_12929:312325-312540 + CAGCAGCAGCAGCAGTTGCAG------------CAGCAACACTTGCA------------------A---------------CAGCAA---------------------CAGATGCAGCAGCAGCAGCAACTGC---------------A------------GCAACAGCA------------ACAGCAA---------CTGCAACA---GCAGCAGCAGCAA---CTGCA------------------------------------G------------CAAC------AGC---AACA------------------ACCTTCTCCCATGCT----G-----------GGCCGACCTGCTGCAG------------------------------------------------TTGCCACCGACATGCAACGCTATG-------TGCAACGC------A-----------------------------------------------------------TGCAACACCAGCAG---CAGCAGCA---------ACAG----C-AG
droBip1 scf7180000396721:710861-711056 + CAGCAGCAGCAGCAGGCGCAA------------CAGCAGCAGCAACA------------------ACAGGTCCAA------------------------------------------CAGCAGC---------A------------------------GCAGCAGCAGGC---------------------------TCAACAGCA---GCAGCAACAACAG---GCCCAGCAGCAGCGGA------------------------------------------------------TGCAGAT----------------------------------------------GATCAGCCAGCAGCAG--------ATC-C------TA-----------------------------------AACCACCAACAAATGCAGCAACAGCAACAACTGGCGCAGCAGCAG---------------------------------------------------------------------CAACAGCA---------GCAGGGACA-AC
droKik1 scf7180000302471:1261573-1261782 - CATCACCAGCAACAGAGTCAC------------CAACAACAGCAACAGC---------------AGCAGTCACAC------------------------------------------CAACAACAGCAGCAGC---------------A------------GCAGCAGGC---------------------------TCACCAACA---GCAACAGCAGCAA---ACTCA------------------------------------C------------CAAC------AGC---AGCAGGTAAGT-CACCACAA---------------------------TG-GTT----------------TGTGTACCAGCT-------TCATGTTA---------------ACCCGGCTTCA----ACCAACCG---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAGGA---------G---------CT
droFic1 scf7180000454044:204508-204722 - CAACAACAACAGCAGGCTCAC------------CAGCAGCAGCA---------------------GCAGTCGCAC------------------------------------------CAGCAGCAGCAGCAGC---------------A------------GCAACAGAG---------------------------TCACCAACA---GCAGCAGCAGCAA---GCTCA------------------------------------T------------CAGC------AGCAACAGCAGGCAAGT-GGTTG------------------------------TG-GTT----------------CGTGTCTAAGCT-------AAAGTGCTT------ACAG----------CTTCTTCTAACCAACAA---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAACA---------GGACGCAGG-AC
droEle1 scf7180000491272:494994-495215 + CAAAGGCAGCAGCAACAAGAA------------CAGCAACGGCAACA------------------G------CAG------------------------------------------CAGCAGC---------AACAACAGCAGGCGCAACAAGA------ACAGCAG------------------------------AGACAGCA---GCAGCAGCAGCAG---GCACA------------------------------------G------------CAGC------AGCAGCAACA---------A---CCACAGCA---------AACCCATTCAGTG------AA---------------GCATTCAG-CATCCAGCT----CTTCC------GCCACTAGCAA------------------CA---------GCAATACAAACACAAACTCCACC--------------------------------------------------------------------AACAGCAGCAACA---------GCAACAACA-AC
droRho1 scf7180000778393:1884-2091 + CAACAACAACAGCAGGCTCAC------------CAGCAGCAGCAGCA------------------GCAAACTCAC------------------------------------------CAACAGC---------A------------------------GCAGCAACAGGC---------------------------TCACCAACA---GCAGCAGCAGCAA---GCTCA------------------------------------C------------CAAC------AAC---AGCAGGTAAGT-CACCA------------------------------CG-GTT----------------CGTGTCTCGTCT-------ACAGCTCT----------------CTCACCTTCCCCT-ACCATCCA---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAACA---------GGACGCAGG-AC
droBia1 scf7180000301754:756327-756532 + CAACAACAACAGCAGACTCAC------------CAACAGCA------------------------GCAGTCTCAC------------------------------------------CAACAAC---------A------------------------ACAGCAGCAATC---------------------------TCACCAACA---GCCGCAGCAGCAG---GCTCA------------------------------------C------------CAAC------AAC---AGCAGGTAAAA-CACCA------------------------------CG-GTT----------------CGCGTCTCCGCTC------ACTGCTTT---------------TCTCACCTTTTGCCACCCGTCCA---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAGCA---------GGAGGCGGGCAT
droTak1 scf7180000414560:5269-5485 + CAACAACAACAGCAGACTCAC------------CAACAGCA------------------------GCAATCTCAC------------------------------------------CAACAAC---------A------------------------ACAGCAGCAAAC---------------------------TCACCAACAGCAGCAGCAGCAACAA---GCTCA------------------------------------C------------CAAC------AACAACAGCAGGTGAGTTCACCA------------------------------GG-GTT----------------CGCGTTTCGGCT-------ACGGCTTTTCCTCTAACTA----------CTTTCTCTACCCTCCCG---------CAGATGGCGCCACCGACGCCCACACAG---------------------------------------------------------------------CAGCAGCA---------AGAGGCCGGAAT
droEug1 scf7180000409474:1182324-1182527 + CAACAACAACAACAGACTCAC------------CAACAGCA------------------------GCAATCTCAC------------------------------------------CAACAAC---------A------------------------GCAGCAGCAAAC---------------------------TCACCAGCA---GCAGCAGCAACAA---GCTCA------------------------------------C------------CAAC------AGC---AGCAGGTAAGT-CACCA------------------------------CG-GCT----------------TATGTCTCGGCT-------AAAGCTTT---------------ACTTACCTTTTGCTGACCGAACA---------CAGATGGCGCCACCAACTCCCACACAG---------------------------------------------------------------------CAACAACA---------AGAGGCAGG-AC
dm3 chr3L:2871282-2871488 - CAGCAGCAACATCTGCAGCAA------------CAGCAACAGCAGCA------------------GCA---TCACGCCCAGCAGCAA------------------------------CATCAGCAGCAGCAGC---------------A------------GCAACAGCA---------------------------GCAGCAGCA---GCAG------------------CAGCACTGGGACTACTATGCCAGGCAGCAGCAGCAACAT---------CAACAGCAGCAGCAGCAACA-------G-----CAACAGC-----------------------------------------------------------------------------------------------------------------------CAGCGGCCGCCACCGGCAACACC-----------------------------------------------------------------AACGG---CAACAGCA---------GCAACAACG-GC
droSim2 3l:16435350-16435556 + AAGAAGCAACGTCAAGCCCTG------------GAGCAGCAACAGCAACTAAATCAACAGCAGCAGCAAACACAA------------------------------------------AATCAACAGCAGCAGC---------------A------------AACACAAAATCAACAACGGCAGCAGCAA---------CAGCAACG---TCTGCAGCAGCAA---------------------------------------------CATGAAAACCAGCAGC------AAC-------------------------------------------------------------------------------------------------------------GCTTGC--------------AGCAGCAGCAGAAGCACCA-------GCAGCAACGTCTAC--AA------------------------------------------------------------------CAGCAACACCA---------GC----AGC-AA
droSec2 scaffold_1:1283274-1283461 - CAGCAGCAGCAGCAGGCCCAGGAGAAGTACCAGCAGCAACAGCAGCA------------------G------CAG------------------------CATCAGCAA---------AACCAGCAGCAGCAGC---------------AGCACCAGCAGCAGCAACAGCA---------------------------GCAGCGTCA---GCAT------------------CAGTTCCTTGAC--------------------------------CCAGC-GC------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAGCAG---CAGCAGCAGACACAGACGCAACAGCAG---------------------------------------------------------------------CAGCCGCA---------GCAGGC--A-GC
droYak3 3L:9059529-9059735 + CAGCAGCAGCAGCACGCCCAG------------CAGCAACACCAGCAAC---------------ATCAGCAGCAG------------------------------------------CAGCAGCAGCAGCAGC---------------A------------GCAACAGCA---------------------------GCAGCAACAGCAGCAG------------------CAGCACTGGGACTACTATGCCAGGCAGCAGCAGCAACAT---------CAACAGCAGCAGCAGCAACA-------G-----CAACAGC-----------------------------------------------------------------------------------------------------------CAG---------CGGCCGCCACCGGCAACACCAAC--------------------------------------------------------------------GGCAACAGCAGCA---------GCAGCAACA-AC
droEre2 scaffold_4690:16845504-16845705 - CAGCAGATGCAGCAGATGCAA------------TTGCAGCAGCAACA------------------GCAGACGCAC------CAGCAACAGCAGCAGCACCAGCAGCAACACCAC---CAACAAC---------A------------------------------------------------GCAGCAGCAGCTATCCC---AGCA---GCAGCTGCAGCTA---AC---------------------------------------C---------CAGCAGC------TGCAGCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACATCTCCA----GCAGCAGCAACACCAAC--------------------------------------------------------------------AACAGCTGCATCAGCA------GCAACAGCA-GG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CAGCAGCAACAGCAGACTCAC------------CAGCAACAGCAACA------------------GCAGACTCAC------------------------------------------CAACAGC---AGCAGC---------------A------------GCAACAGAC---------------------------TCACCAACAGCAGCAGCAGCAGCAG---ACTCA------------------------------------C------------CAAC------AGC---AGCAGGTAACTA-----CAA----------------CCCCTGG----AGAG-C----------------TGTGTTCCAACCCCCAGCTAAAGCTTTC------ACCGCTTATCT------------------CG---------CAGATGGCTCCGCCGACTCCATCGCAG---------------------------------------------------------------------CAGCAGCA---------GCAGGAAGG-ACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................CAC------------------------------------------CAACAGC---AGCAGC---------------A------------GCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................2270.1410000001000
..........................................................................C------------------------------------------CAACAGC---AGCAGC---------------A------------GCAA..............................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
......................................................................................................................................................................................................CACCAACAGCAGCAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................21200.0510000000010
.....................................................................................................................CAACAGC---AGCAGC---------------A------------GCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..........................................................................C------------------------------------------CAACAGC---AGCAGC---------------A------------GCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010000000
droPer2
CAGCAGCAACAGCAGACTCAC------------CAGCAACAGCAACA------------------GCAGACTCAC------------------------------------------CAACAGCAGCAGCAGC---------------A------------GCAACAGAC---------------------------TCACCAACAGCAGCAGCAGCAGCAG---ACTCA------------------------------------C------------CAAC------AGC---AGCAGGTAACTA-----CAA----------------CCCCTGG----AGAG-C----------------TTTATTCCAACCCCCAGCTAAAGCTTTC------ACCGCTTATCT------------------CG---------CAGATGGCTCCGCCGACCCCATCGCAG---------------------------------------------------------------------CAGCAGCA---------GCAGGAAGG-ACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCGCAG---------------------------------------------------------------------CAGCAGCA---------GCAG........2140.251010000
...........................................................................................................................CAGCAGCAGC---------------A------------GCAACAGA..........................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
........................................................................CAC------------------------------------------CAACAGCAGCAGCAGC---------------A------------..................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
......................................................................................................................................................................................................CACCAACAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................20200.051001000
.............................................................................................................................................................................................................AGCAGCAGCAGCAGCAG---AC................................................................................................................................................................................................................................................................................................................................................19200.051010000
droWil2
CAACAGCAGCAACATAGCCAA------------CAGCAGCAGCA---------------------------TGGC------------------------CAACAGCAGCATAAC---CAACAGC---AGCAAC---------------A------------TCATCATTC---------------------------AC---AGCA---GCAGCAGCAGCAA---CACAG------------------------------------C------------CAAC------AGCAACAACA---------A---CAACAGCA---------TAT----G-----------TATCATGCTGCTGCAG------------------------------------------------TTGCTGCACATCAGCAACAGTTGC-------TGCAACATCAACGCCATC--------------------------------------------------------------------AGCAGCAGCAACA---------GCAGCAGCA-GCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCAACGCCATC--------------------------------------------------------------------AGCAGCAGC.........................2412.00200020
......................................................................................................................AACAGC---AGCAAC---------------A------------TCATCATTC---------------------------AC---.........................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................AGC---AGCAAC---------------A------------TCATCATTC---------------------------AC---A........................................................................................................................................................................................................................................................................................................................................................................2211.00100001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACGCCATC--------------------------------------------------------------------AGCAGCA...........................1911.00100010
.......AGCAACATAGCCAA------------CAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
......................................................................................................................AACAGC---AGCAAC---------------A------------TCATCATTC---------------------------AC---AG.......................................................................................................................................................................................................................................................................................................................................................................2611.00101000
.................................................................................................................................................................................................................................CACAG------------------------------------C------------CAAC------AGCAACAACA---------A---CAACAGC....................................................................................................................................................................................................................................................2811.00101000
.............................................................................................................................................................................................................................................................................................................................................................ATCATGCTGCTGCAG------------------------------------------------TTGC...................................................................................................................................................1911.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATCAACGCCATC--------------------------------------------------------------------AGCAGCAGC.........................2511.00101000
...............................................................................................................................................................................................................................................................................................................................A---------TAT----G-----------TATCATGCTGCTGCAG------------------------------------------------TTGCT..................................................................................................................................................2611.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACATCAACGCCATC--------------------------------------------------------------------AGCAGCAGC.........................2711.00100010
....................................................................................................AACAGCAGCATAAC---CAACAGC---A...................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
.............................................................................................................ATAAC---CAACAGC---AGCAAC---------------A------------TC................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010
......................................................................................................................AACAGC---AGCAAC---------------A------------TCATCAT...........................................................................................................................................................................................................................................................................................................................................................................................................20100.10100001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC--------------------------------------------------------------------AGCAGCAGCAACA---------GCAGCA......22200.10200020
.......................................................................................................................................................................TTC---------------------------AC---AGCA---GCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................18110.09100010
.................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCAG------------------------------------------------TTGCTGC................................................................................................................................................18110.09100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATC--------------------------------------------------------------------AGCAGCAGCAACA---------GC..........19200.05101000
.........................................................................................................................................................................C---------------------------AC---AGCA---GCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................19200.05100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA---------GCAGCAGCA-GC20200.05100010
.............................................................................................................................................................................................................A---GCAGCAGCAGCAA---CACA..............................................................................................................................................................................................................................................................................................................................................18200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACA---------GCAGCAGCA-GC24200.05101000
..........................................................................................................................................................................................................................................................................................C------AGCAACAACA---------A---CAACAGC....................................................................................................................................................................................................................................................19200.05100010
droVir3
CAGCAGCAGCAACAGCACCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCAA---------CAGCAGCAGCAA---------CAGCAACA---GCAGCAGCAGCAG---GTGAA------------------------------------C------------AGCC------AGG---TGCAGAC----------------------------------------------GACGAGCG--------CGTATTCCATA-C------ACGGCTAT----------------C----ATTCAACT---AGTCCA---------CAGACG------CAGTCGCCCAGCCAG---------------------------------------------------------------CAG---CAGGTGCA---------GCAGGC--G-GGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................TGCAGAC----------------------------------------------GACGAGCG--------CGTA...................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCA---------CAGACG------CAGTCGCC.........................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCA---------CAGACG------CAGTCGCCCAGCCA...................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCA---------CAGACG------CAGTCGCCCAGCCA...................................................................................................2511.001000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................GACGAGCG--------CGTATTCCATA-C------ACG.................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................A-C------ACGGCTAT----------------C----ATTCAACT---A...........................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.AGCAGCAGCAACAGCACCAG------------CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................GAA------------------------------------C------------AGCC------AGG---TGCAGAC----------------------------------------------GACGAGCG--------C......................................................................................................................................................................................................2711.001000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................GAA------------------------------------C------------AGCC------AGG---TGCAGAC----------------------------------------------GACG...................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................CC------AGG---TGCAGAC----------------------------------------------GACGAGC................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG------CAGTCGCCCAGCCAG---------------------------------------------------------------CAG---.............................2111.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................AGCC------AGG---TGCAGAC----------------------------------------------GACGAGCG--------C......................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------CAG---CAGGTGCA---------GCAGGC--G-GG2111.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................GCAG---GTGAA------------------------------------C------------AGCC------AGG---T...........................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ATA-C------ACGGCTAT----------------C----ATTCAACT---............................................................................................................................................2111.001000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CAACT---AGTCCA---------CAGACG------CAGTC............................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................AGCAGCAA---------CAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................19200.153000000000000000002000000000000010000000000000000000000000000000
.....................................................................................................................................A------------------------ACAGCAGCAA---------CAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................19200.153000000000000000000000100000000000200000000000000000000000000000
........GCAACAGCACCAG------------CAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................CAGCAA---------CAGCAACA---GCAGC.............................................................................................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
...CAGCAGCAACAGCACCAG------------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20100.101001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACAAC---------A------------------------ACAGCAGCAA---------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................24200.102002000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GCAGCAA---------CAGCAACA---GCAGC.............................................................................................................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AGCAGCAGCAA---------CAGCAACA---GCAGCA............................................................................................................................................................................................................................................................................................................................................................25200.102000000000000000001000000000000010000000000000000000000000000000
...................................................................................................................................................................AGCAA---------CAGCAGCAGCAA---------CA...........................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000002000000000000000000000000000000000000000000000000
...........................................A---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................CAA---------CAGCAGCAGCAA---------CAGCA........................................................................................................................................................................................................................................................................................................................................................................20200.102000000000000000000000000000000000000200000000000000000000000000
.........CAACAGCACCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................25110.091000100000000000000000000000000000000000000000000000000000000000
.....GCAGCAACAGCACCAG------------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.081001000000000000000000000000000000000000000000000000000000000000
.........................................GCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCAA---------CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................27140.071001000000000000000000000000000000000000000000000000000000000000
.............AGCACCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.061001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AA---------CAGCAGCAGCAA---------CAGCAACA---GCAGCA............................................................................................................................................................................................................................................................................................................................................................28170.061001000000000000000000000000000000000000000000000000000000000000
...................................GCAGCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.........CAACAGCACCAG------------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AA---------CAGCAGCAGCAA---------CAGCAACA---GCA...............................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AGCAGCAA---------CAGCAGCAGCAA---------CAGCA........................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
................ACCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................AAC---------A------------------------ACAGCAGCAA---------CAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AGCAGCAA---------CAGCAACA---GCAGCA............................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
..................................AGCAGCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGC................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
..........................................CA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCAA---------CAGC..............................................................................................................................................................................................................................................................................................................................................................................................25200.051000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AA---------CAGCAGCAGCAA---------CAGCAACA---GCAGT.............................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000001000000000000000000000000000
.................CCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000000000000000000000100000000
...............CACCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------AACAAC---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
.................CCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------AAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................ACAGCAGCAA---------CAGCAGCAGCAA---------.............................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000100000000000000000000000000000000000000000000000
.......................................CAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACAAC---------A------------------------ACAGCAGCAA---------CAGC..............................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................ACAGCAGCAA---------CAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................AA---------CAGCAGCAGCAA---------CAGCAA.......................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................A---------CAGCAGCAGCAA---------CAGCAACA---..................................................................................................................................................................................................................................................................................................................................................................21200.051000010000000000000000000000000000000000000000000000000000000000
..............GCACCAG------------CAGCAGCAGCA---------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000010000000000000000000000000000000000000
......................................GCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCAA---------C.................................................................................................................................................................................................................................................................................................................................................................................................26200.051000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AA---------CAGCAACA---GCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000001000000000000000000000000000000
......................................GCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAAC---------A------------------------ACAGCAGCAA---------CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
.....................................AGCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000001000000000000000000000000000000000
...............CACCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
............CAGCACCAG------------CAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.................CCAG------------CAGCAGCAGCA---------------------GC---------------------------------------------------AACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................GCAGCAA---------CAGCAGCAGCAA---------C............................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................CAGCAA---------CAGCAACA---GCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000100
.........................................................................................................................AAC---------A------------------------ACAGCAGCAA---------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................C---------A------------------------ACAGCAGCAA---------CAGCAGCAGCAA---------C............................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................A------------------------ACAGCAGCAA---------CAGCAGCAGCAA---------C............................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GCAGCAA---------CAGCAACA---GCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000010000000000000000000000000000000000000000
....................G------------CAGCAGCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................ACAAC---------A------------------------ACAGCAGCAA---------CAGCA.............................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................CAGCAGCAA---------CAGCAACA---GCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
...........ACAGCACCAG------------CAGCAGCAGCA---------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................ACAGCAGCAA---------CAGCAGCAGCAA---------C............................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................................................................................................GCAA---------CAGCAACA---GCAGCAGCAGC.......................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................C---------A------------------------ACAGCAGCAA---------CAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................GCAGCAA---------CAGCAGCAGCAA---------CAGCAAC......................................................................................................................................................................................................................................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAAC---------A------------------------ACAGCAGCAA---------CAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000001000000000000000000000000000000000000000000000
........................................AGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGC................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000100000000000000000000000000
...........ACAGCACCAG------------CAGCAGCAGCA---------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..................................AGCAGCAGCA---------------------GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CAGCAA---------CAGCAACA---GCAGCAG...........................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................CAGCAGCAA---------CAGCAGCAGCAA---------CA...........................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000000000000000000000000000000000000010
.................................................................GC---------------------------------------------------AACAAC---------A------------------------ACAGCAGCAA---------CAGC..............................................................................................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CAGCAGCAACAGCAGCAGCAG------------CAGCAACAGCAACA------------------G------CAG------------------------------------------CAACAAC---------AGCAGCAGCAACAGCA------------GCAGCAGCA------------------A---------CAGCAACA---GCAGCAGCAGCAATTGACGCA------------------------------------A------------CAGC------AAC---AGCTGA--------CTG------------------------------CG-GCT----------------GCTGCCGCCC-----------------------------------------------AGCAGG--------C-------C---------------------GCTCTCGCCGTCACCGCCTCGAAGGTCGGCGTCACCACCGATGGCCAGGCCAAG---------------CTGCAGCAGAAGGTGGTGCA-GAAGG-TGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................GCTGA--------CTG------------------------------CG-GCT----------------GCTGCCGCCC-----------------------------------------------..............................................................................................................................................2311.001000010
........................................AGCAACA------------------G------CAG------------------------------------------CAACAAC---------AGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.........................................................................................................................AAC---------AGCAGCAGCAACAGCA------------GCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.........................................................................................................................................................................A------------------A---------CAGCAACA---GCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................22200.051000010
........................................................................CAG------------------------------------------CAACAAC---------AGCAGCAGCAACAGCA------------..................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000010
....AGCAACAGCAGCAGCAG------------CAGCAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
......................................ACAGCAACA------------------G------CAG------------------------------------------CAACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
droGri2
CAGCAGCAACAGCAGCAACAG------------CAGCAACAGCAGCA------------------G------CAG------------------------------------------CAACAGC---------AGCAACAGCAACA---------------GCAGCAGCA---------------------------GCAGCAGCA---ACAACAGCAGCAG---AAGCA------------------------------------A------------CAAC------AAC---AGCAGCTGCAA-C--AGCAA----------------CAAATTG----AG------------------------AAACAACAGTCAGCCAA---TTT-------------------GGTT---------------------------------------------------GTTTCCATTGCCACCGTA----------GCGC--------------------CGCAACTCCAACAA---CAACAGCA---------GCAGTC--A-ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................ACAGTCAGCCAA---TTT-------------------GGTT---------------------------------------------------..................................................................................................1920.50110
.......................................................................................................................................................................GCA---------------------------GCAGCAGCA---ACAACAGCA.........................................................................................................................................................................................................................................................................................................................................................21200.10220
.............................................CA------------------G------CAG------------------------------------------CAACAGC---------AGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10220
.............AGCAACAG------------CAGCAACAGCAGCA------------------G------C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110
..................................AGCAACAGCAGCA------------------G------CAG------------------------------------------CAACAGC---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110
.................ACAG------------CAGCAACAGCAGCA------------------G------CAG------------------------------------------CAACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05110
........................................................................................................................CAGC---------AGCAACAGCAACA---------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................20200.05110
droAna3
CAGCAGCAGCAGCAGTTGCAG------------CAGCAACACTTGCA------------------A---------------CAGCAA---------------------CAGATGCAGCAGCAGCAGCAACTGC---------------A------------GCAACAGCA------------ACAGCAA---------CTGCAACA---GCAGCAGCAGCAA---CTGCA------------------------------------G------------CAAC------AGC---AACA------------------ACCTTCTCCCATGCT----G-----------GGCCGACCTGCTGCAG------------------------------------------------TTGCCACCGACATGCAACGCTATG-------TGCAACGC------A-----------------------------------------------------------TGCAACACCAGCAG---CAGCAGCA---------ACAG----C-AGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................GC---AACA------------------ACCTTCTCCCATGCT----G-----------GGCC...................................................................................................................................................................................................................2611.001010000
.........................................................................................................................AGCAGCAACTGC---------------A------------GCAACAG...........................................................................................................................................................................................................................................................................................................................................................................................................2040.251100000
......................................................................................................................................................................................................................AGCAGCAA---CTGCA------------------------------------G------------CAAC------AG................................................................................................................................................................................................................................................................................2040.251100000
.....................................................................................................................................................................................................................CAGCAGCAA---CTGCA------------------------------------G------------CAAT------..................................................................................................................................................................................................................................................................................19140.071010000
........................................................................................................................CAGCAGCAACTGC---------------A------------GCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................19140.071010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---CAGCAGCA---------ACAG----C-A.19200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAG---CAGCAGCA---------ACAG----C-A.21200.051000100
...............................................................................................................................AACTGC---------------A------------GCAACAGCA------------ACAGCAG---------.............................................................................................................................................................................................................................................................................................................................................................................23200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACCAGCAG---CAGCAGC......................20200.051001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACACCAGCAG---CAGCAGCA---------............20200.051010000
droBip1
CAGCAGCAGCAGCAGGCGCAA------------CAGCAGCAGCAACA------------------ACAGGTCCAA------------------------------------------CAGCAGC---------A------------------------GCAGCAGCAGGC---------------------------TCAACAGCA---GCAGCAACAACAG---GCCCAGCAGCAGCGGA------------------------------------------------------TGCAGAT----------------------------------------------GATCAGCCAGCAGCAG--------ATC-C------TA-----------------------------------AACCACCAACAAATGCAGCAACAGCAACAACTGGCGCAGCAGCAG---------------------------------------------------------------------CAACAGCA---------GCAGGGACA-ACSizeHit CountTotal NormTotal
No Reads
droKik1
CATCACCAGCAACAGAGTCAC------------CAACAACAGCAACAGC---------------AGCAGTCACAC------------------------------------------CAACAACAGCAGCAGC---------------A------------GCAGCAGGC---------------------------TCACCAACA---GCAACAGCAGCAA---ACTCA------------------------------------C------------CAAC------AGC---AGCAGGTAAGT-CACCACAA---------------------------TG-GTT----------------TGTGTACCAGCT-------TCATGTTA---------------ACCCGGCTTCA----ACCAACCG---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAGGA---------G---------CTSizeHit CountTotal NormTotal
No Reads
droFic1
CAACAACAACAGCAGGCTCAC------------CAGCAGCAGCA---------------------GCAGTCGCAC------------------------------------------CAGCAGCAGCAGCAGC---------------A------------GCAACAGAG---------------------------TCACCAACA---GCAGCAGCAGCAA---GCTCA------------------------------------T------------CAGC------AGCAACAGCAGGCAAGT-GGTTG------------------------------TG-GTT----------------CGTGTCTAAGCT-------AAAGTGCTT------ACAG----------CTTCTTCTAACCAACAA---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAACA---------GGACGCAGG-ACSizeHit CountTotal NormTotal
No Reads
droEle1
CAAAGGCAGCAGCAACAAGAA------------CAGCAACGGCAACA------------------G------CAG------------------------------------------CAGCAGC---------AACAACAGCAGGCGCAACAAGA------ACAGCAG------------------------------AGACAGCA---GCAGCAGCAGCAG---GCACA------------------------------------G------------CAGC------AGCAGCAACA---------A---CCACAGCA---------AACCCATTCAGTG------AA---------------GCATTCAG-CATCCAGCT----CTTCC------GCCACTAGCAA------------------CA---------GCAATACAAACACAAACTCCACC--------------------------------------------------------------------AACAGCAGCAACA---------GCAACAACA-ACSizeHit CountTotal NormTotal
No Reads
droRho1
CAACAACAACAGCAGGCTCAC------------CAGCAGCAGCAGCA------------------GCAAACTCAC------------------------------------------CAACAGC---------A------------------------GCAGCAACAGGC---------------------------TCACCAACA---GCAGCAGCAGCAA---GCTCA------------------------------------C------------CAAC------AAC---AGCAGGTAAGT-CACCA------------------------------CG-GTT----------------CGTGTCTCGTCT-------ACAGCTCT----------------CTCACCTTCCCCT-ACCATCCA---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAACA---------GGACGCAGG-ACSizeHit CountTotal NormTotal
No Reads
droBia1
CAACAACAACAGCAGACTCAC------------CAACAGCA------------------------GCAGTCTCAC------------------------------------------CAACAAC---------A------------------------ACAGCAGCAATC---------------------------TCACCAACA---GCCGCAGCAGCAG---GCTCA------------------------------------C------------CAAC------AAC---AGCAGGTAAAA-CACCA------------------------------CG-GTT----------------CGCGTCTCCGCTC------ACTGCTTT---------------TCTCACCTTTTGCCACCCGTCCA---------CAGATGGCGCCACCGACACCCACACAG---------------------------------------------------------------------CAGCAGCA---------GGAGGCGGGCATSizeHit CountTotal NormTotal
No Reads
droTak1
CAACAACAACAGCAGACTCAC------------CAACAGCA------------------------GCAATCTCAC------------------------------------------CAACAAC---------A------------------------ACAGCAGCAAAC---------------------------TCACCAACAGCAGCAGCAGCAACAA---GCTCA------------------------------------C------------CAAC------AACAACAGCAGGTGAGTTCACCA------------------------------GG-GTT----------------CGCGTTTCGGCT-------ACGGCTTTTCCTCTAACTA----------CTTTCTCTACCCTCCCG---------CAGATGGCGCCACCGACGCCCACACAG---------------------------------------------------------------------CAGCAGCA---------AGAGGCCGGAATSizeHit CountTotal NormTotal
No Reads
droEug1
CAACAACAACAACAGACTCAC------------CAACAGCA------------------------GCAATCTCAC------------------------------------------CAACAAC---------A------------------------GCAGCAGCAAAC---------------------------TCACCAGCA---GCAGCAGCAACAA---GCTCA------------------------------------C------------CAAC------AGC---AGCAGGTAAGT-CACCA------------------------------CG-GCT----------------TATGTCTCGGCT-------AAAGCTTT---------------ACTTACCTTTTGCTGACCGAACA---------CAGATGGCGCCACCAACTCCCACACAG---------------------------------------------------------------------CAACAACA---------AGAGGCAGG-ACSizeHit CountTotal NormTotal
No Reads
dm3
CAGCAGCAACATCTGCAGCAA------------CAGCAACAGCAGCA------------------GCA---TCACGCCCAGCAGCAA------------------------------CATCAGCAGCAGCAGC---------------A------------GCAACAGCA---------------------------GCAGCAGCA---GCAG------------------CAGCACTGGGACTACTATGCCAGGCAGCAGCAGCAACAT---------CAACAGCAGCAGCAGCAACA-------G-----CAACAGC-----------------------------------------------------------------------------------------------------------------------CAGCGGCCGCCACCGGCAACACC-----------------------------------------------------------------AACGG---CAACAGCA---------GCAACAACG-GCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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....................................................................................CAA------------------------------CATCAGCAGCAGCAGC---------------A------------..................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................CAA------------------------------CATCAGCAGCAGCAGC---------------A------------GC................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................GCAA------------------------------CATCAGCAGCAGCAGC---------------A------------GC................................................................................................................................................................................................................................................................................................................................................................................................................23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
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........................................................................................................................CAGCAGCAGCAGC---------------A------------GCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................GCAGCAGC---------------A------------GCAACAGCA---------------------------GCAGCAGCA---GC................................................................................................................................................................................................................................................................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................ACAGCA---------------------------GCAGCAGCA---GCAG------------------CAGC........................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAGCAA------------------------------CATCAGCAGCAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................AGCAGCAA------------------------------CATCAGCAGCAGCAGC---------------...............................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................C---------------A------------GCAACAGCA---------------------------GCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AGCAGC---------------A------------GCAACAGCA---------------------------GCAGC.........................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
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..................................................................................................................................AGC---------------A------------GCAACAGCA---------------------------GCAGCAG.......................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................................................AGCAA------------------------------CATCAGCAGCAGCAGC---------------A------------G.................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................AGCAA------------------------------CATCAGCAGCAGCAGC---------------A------------GCACG.............................................................................................................................................................................................................................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.................................CAGCAACAGCAGCA------------------GCA---T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACA-------G-----C..........................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................CAA------------------------------CATCAGCAGCAGCAGC---------------A------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droSim2
AAGAAGCAACGTCAAGCCCTG------------GAGCAGCAACAGCAACTAAATCAACAGCAGCAGCAAACACAA------------------------------------------AATCAACAGCAGCAGC---------------A------------AACACAAAATCAACAACGGCAGCAGCAA---------CAGCAACG---TCTGCAGCAGCAA---------------------------------------------CATGAAAACCAGCAGC------AAC-------------------------------------------------------------------------------------------------------------GCTTGC--------------AGCAGCAGCAGAAGCACCA-------GCAGCAACGTCTAC--AA------------------------------------------------------------------CAGCAACACCA---------GC----AGC-AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................................................................................................................................CTGCAGCAGCAA---------------------------------------------CATGAAAACCAGC...........................................................................................................................................................................................................................................................................................2511.00100010000000000000
...................................................................................................................................................................................GCAGCAGCAA---------CAGCAACG---TC................................................................................................................................................................................................................................................................................................................................................................2020.50100001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACACCA---------GC----AGC-A.16200.05100000000001000000
droSec2
CAGCAGCAGCAGCAGGCCCAGGAGAAGTACCAGCAGCAACAGCAGCA------------------G------CAG------------------------CATCAGCAA---------AACCAGCAGCAGCAGC---------------AGCACCAGCAGCAGCAACAGCA---------------------------GCAGCGTCA---GCAT------------------CAGTTCCTTGAC--------------------------------CCAGC-GC------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACAGCAG---CAGCAGCAGACACAGACGCAACAGCAG---------------------------------------------------------------------CAGCCGCA---------GCAGGC--A-GCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................GCAACAGCA---------------------------GCAGCGTCA---GCAT------------------CA..........................................................................................................................................................................................................................................................................................................................................2411.0010010
..........................GTACCAGCAGCAACAGCAGCA------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................ATCAGCAA---------AACCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................................................................................................................................................................ACAGCA---------------------------GCAGCGTCA---GCAT------------------CAGTTCC.....................................................................................................................................................................................................................................................................................................................................2611.0010100
..............................................................................................................................................................GCAGCAACAGCA---------------------------GCAGCGTCA---GC................................................................................................................................................................................................................................................................................................................................................................2311.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAGCAGACACAGAC............................................................................................................2011.0011000
...................................................................................................................................................................AACAGCA---------------------------GCAGCGTCA---GCAT------------------............................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................................................................................GTTCCTTGAC--------------------------------CCAGC-GC------------------------------------------------------------------------------------------------------------------------------------------A.............................................................................................................................................1811.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG---------------------------------------------------------------------CAGCCGCA---------GCAGGC--A-GC2611.0010010
.............AGGCCCAGGAGAAGTACCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...CAGCAGCAGCAGGCCCAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.................................................................................................................................................................................................................................................AC--------------------------------CCAGC-GC------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAACA....................................................................................................................................1911.0010001
.........................................................................................................................................................................A---------------------------GCAGCGTCA---GCAT------------------CAGTTCCT....................................................................................................................................................................................................................................................................................................................................2211.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACAGACGCAACAGC....................................................................................................1811.0010010
.................................................................G------CAG------------------------CATCAGCAA---------AACCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.........................................................................................................................................................................................................................................GTTCCTTGAC--------------------------------CCAGC-GC------------------------------------------------------------------------------------------------------------------------------------------AGC...........................................................................................................................................2011.0010001
.....................GAGAAGTACCAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.................................................................................................................................................................GCAACAGCA---------------------------GCAGCGTCA---GC................................................................................................................................................................................................................................................................................................................................................................2020.5010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG---CAGCAGCAGACACA...............................................................................................................2120.5010010
.........................................................................................................................AGCAGCAGCAGC---------------AGCACCAGCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................2720.5010010
...................................................................................................................................................................AACAGCA---------------------------GCAGCGTCA---GC................................................................................................................................................................................................................................................................................................................................................................1840.2510010
.........................................................................................................................AGCAGCAGCAGC---------------AGCACCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................22100.1010010
.....................................................................................................................AACCAGCAGCAGCAGC---------------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................19150.0710010
.........................................GCAGCA------------------G------CAG------------------------CATCAGCAA---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................19190.0510010
........................................................................................................................................................CCAGCAGCAGCAACAGCA---------------------------GC............................................................................................................................................................................................................................................................................................................................................................................20200.0510100
.......................................CAGCAGCA------------------G------CAG------------------------CATCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510010
droYak3
CAGCAGCAGCAGCACGCCCAG------------CAGCAACACCAGCAAC---------------ATCAGCAGCAG------------------------------------------CAGCAGCAGCAGCAGC---------------A------------GCAACAGCA---------------------------GCAGCAACAGCAGCAG------------------CAGCACTGGGACTACTATGCCAGGCAGCAGCAGCAACAT---------CAACAGCAGCAGCAGCAACA-------G-----CAACAGC-----------------------------------------------------------------------------------------------------------CAG---------CGGCCGCCACCGGCAACACCAAC--------------------------------------------------------------------GGCAACAGCAGCA---------GCAGCAACA-ACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................AGCAAC---------------ATCAGCAGCAG------------------------------------------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10202000000000
.....................................................................CAGCAG------------------------------------------CAGCAGCAGCAGCAGC---------------A------------GC................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000002
..........................................CAGCAAC---------------ATCAGCAGCAG------------------------------------------CA............................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000020000
............................................................................................................................................................................................................................................................................AT---------CAACAGCAGCAGCAGCAA..........................................................................................................................................................................................................................................................................20140.07101000000000
....................................................................................................................................................................................................................................................................GCAGCAACAT---------CAACAGCAGCA.................................................................................................................................................................................................................................................................................21160.06101000000000
........................................................................................................................................................................................................................................................................CAACAT---------CAACAGCAGCAGCA..............................................................................................................................................................................................................................................................................20180.06100000010000
................................................C---------------ATCAGCAGCAG------------------------------------------CAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010000000
.......................................................................................................................................................................GCA---------------------------GCAGCAACAGCAGCAG------------------CAGCA.......................................................................................................................................................................................................................................................................................................................................24200.05101000000000
..................................................................................................................................................................CAACAGCA---------------------------GCAGCAACAGCAGCAG------------------CA..........................................................................................................................................................................................................................................................................................................................................26200.05100010000000
............................................GCAAC---------------ATCAGCAGCAG------------------------------------------CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000100000
................................................................ATCAGCAGCAG------------------------------------------CAGCAGCAGCAGCAGC---------------A------------..................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
..................................................................................................................................................................CAACAGCA---------------------------GCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
............................................................................................................................AGCAGCAGC---------------A------------GCAACAGCA---------------------------..............................................................................................................................................................................................................................................................................................................................................................................19200.05100010000000
.........................................................................................................................................................................A---------------------------GCAGCAACAGCAGCAG------------------CA..........................................................................................................................................................................................................................................................................................................................................19200.05101000000000
........................................................................................................................................................................CA---------------------------GCAGCAACAGCAGCAG------------------CAGCA.......................................................................................................................................................................................................................................................................................................................................23200.05100000010000
...............................................................................................................................AGCAGC---------------A------------GCAACAGCA---------------------------GCAGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
............................................................................................................................AGCAGCAGC---------------A------------GCAACAGCA---------------------------GC............................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
droEre2
CAGCAGATGCAGCAGATGCAA------------TTGCAGCAGCAACA------------------GCAGACGCAC------CAGCAACAGCAGCAGCACCAGCAGCAACACCAC---CAACAAC---------A------------------------------------------------GCAGCAGCAGCTATCCC---AGCA---GCAGCTGCAGCTA---AC---------------------------------------C---------CAGCAGC------TGCAGCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACATCTCCA----GCAGCAGCAACACCAAC--------------------------------------------------------------------AACAGCTGCATCAGCA------GCAACAGCA-GGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................AGCAGCAACACCAC---CAACAAC---------A------------------------------------------------GCAGC........................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................................................................................................AACACCAC---CAACAAC---------A------------------------------------------------GCAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...............ATGCAA------------TTGCAGCAGCAACA------------------GCAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.........................................................................................GCAGCAGCACCAGCAGCAACACCAC---C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA----GCAGCAGCAACACCAAC--------------------------------------------------------------------AACAG.............................2611.0011000000
..........................................................................................................AACACCAC---CAACAAC---------A------------------------------------------------GCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.................................................................................................................................................................................................................................................................................................TGCAGCAGC---------------------------------------------------------------------------------------------------------------------------AGCAGCAACAACATCTCC............................................................................................................................2711.0011000000
................TGCAA------------TTGCAGCAGCAACA------------------GCAGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACACCAAC--------------------------------------------------------------------AACAGCT...........................2011.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAC--------------------------------------------------------------------AACAGCTGCATCAGCA------............2311.0010001000
.........................................................................AC------CAGCAACAGCAGCAGCACCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.5010100000
.....................................................................................AACAGCAGCAGCACCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510000010
.....................................................................................AACAGCAGCAGCACCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2011000000

Generated: 05/18/2015 at 12:01 AM