ID:

dps_1047

Coordinate:

3:6182608-6182758 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in alignment

mismatch in read

Predicted structure

-23.0	-22.9	-22.9

Flybase annnotation

CDS [Dpse\GA21437-cds]; exon [dpse_GLEANR_14542:3]; intron [Dpse\GA21437-in]; Antisense to intron [Dpse\fat-spondin-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACTTTAGTTTGTCGGCGAGCGTTACAGAGTATATCCGGAGTGATTTGAAAACCTCAAAGTTGGATTTAGACAGCATCCTTCGGTTGGCTGAGCCCCTAGAAAGCGATTATTTTAAGAACACAATAGTGGAAGACCAAGTTGTAAGTGCTTGCCCGATGATAAATGCATGCCAGGCGTAATGTAAATCCTTTTTAATCACAGAAAAACGCCACAAAAATGGGAAGCCCACAGAAGGAGTTTACTAAACTCCA ************************************************...........((((((.....((((....((.(((((((............((((.(((((.......(((((..(((....))).)))))))))).)))).............)).))))).))..)))))))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo	GSM343916 embryo	GSM444067 head	V112 male body
.................................................................TTGGACCGCCTCCTTCGGTTGGC...................................................................................................................................................................	23	3	1	1.00	1	0	0	1	0	0
....TAGTTTGTCGGCGAGCGTTACAGAG..............................................................................................................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
...............................................................................TCGGTTGGCTGAGCCCCT..........................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................TGGAAGACGAACTTGTAAGTCC.......................................................................................................	22	3	1	1.00	1	0	0	0	1	0
..............................ATACGCAGAGTGATTTGAAAA........................................................................................................................................................................................................	21	3	6	0.33	2	1	1	0	0	0
..............................ATACGCAGAGTGATTTGAAA.........................................................................................................................................................................................................	20	3	10	0.30	3	2	0	1	0	0
.......................................................................................................................................ACGTTGTAAGTGGTTGACC.................................................................................................	19	3	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

TGAAATCAAACAGCCGCTCGCAATGTCTCATATAGGCCTCACTAAACTTTTGGAGTTTCAACCTAAATCTGTCGTAGGAAGCCAACCGACTCGGGGATCTTTCGCTAATAAAATTCTTGTGTTATCACCTTCTGGTTCAACATTCACGAACGGGCTACTATTTACGTACGGTCCGCATTACATTTAGGAAAAATTAGTGTCTTTTTGCGGTGTTTTTACCCTTCGGGTGTCTTCCTCAAATGATTTGAGGT ************************************************...........((((((.....((((....((.(((((((............((((.(((((.......(((((..(((....))).)))))))))).)))).............)).))))).))..)))))))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M040 female body	M059 embryo
...............................................................................................................................................................ATTTACGTACGGTCCGCATTAC......................................................................	22	0	1	1.00	1	1	0
..................................................................................................................................................CGGACGAGCTACTTTTTACGT....................................................................................	21	3	4	0.25	1	0	1
.................................................................................................................................................................................TTACATTTAGGAAATATTC.......................................................	19	2	5	0.20	1	1	0

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
dp5	3:6182558-6182808 -	dps_1047	ACTTTAGTTTGTCGGCGAGCGTTACAGAGTATA------------------------------------------------------TCCGGAGTGATTTGAAAACCTCAAAGTTGGATTTAGACAGCATCCTTCGGTTGGCTGAGCCCCTAGAA---------AGCGATTATTTTAAGAACACAATAGTGGAAGACCAAGTTGTAAGTGCTTGCCCGATGATAAATGCATGCCAGGCGTAATGTAAATCCTTTTTAATCACAGAAAAACGCCACAAAAATGGGAAGCCCACAGAAGGAGTTTACTAAACTCCA
droPer2	scaffold_2:6397421-6397671 -		ACTTCAGTTTGTCGGCGAGCGTTACAGAGTATA------------------------------------------------------TCCGGAGTGATTTGAAAACCTCAAAGTTGGATTTAGACAGCCTCCTTCGGTTGACTGAGCCCCTAGAA---------AGCGATGCTTTTGAGAACACACTAGTGGAAGACCAAGTTGTAAGTGCTTGCCCGATGATAAATACATCCCAGGCGTAATGTAAATCCTTTTTAATCACAGAAAAACGCCACAAAAATGGGAAGCCCACAGAAGGAGTTTACTAAACTCCA
droMoj3	scaffold_6496:23954816-23954844 -		A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACACAGACGGAGCAGGAAAAAGCAGA
droGri2	scaffold_15112:987479-987663 +		ATTTTGATTTATCCGACAGCGTAATGGCATTTCTACAGGTAAGTCATATCTTTTGCACCTCTATTGAGCAGATTAATCTGTTTATTTTTTAGAGTGACTTGGAAACCACACAATTGGATGCAGATAGTTTGTGGGAATTGGCTGAAACCAGTGAGAAGCGCAACCGTGATTCCTTTGAAAAGATA---------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

dp5

ACTTTAGTTTGTCGGCGAGCGTTACAGAGTATA------------------------------------------------------TCCGGAGTGATTTGAAAACCTCAAAGTTGGATTTAGACAGCATCCTTCGGTTGGCTGAGCCCCTAGAA---------AGCGATTATTTTAAGAACACAATAGTGGAAGACCAAGTTGTAAGTGCTTGCCCGATGATAAATGCATGCCAGGCGTAATGTAAATCCTTTTTAATCACAGAAAAACGCCACAAAAATGGGAAGCCCACAGAAGGAGTTTACTAAACTCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....TAGTTTGTCGGCGAGCGTTACAGAG.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................TCGGTTGGCTGAGCCCCT...................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACTTCAGTTTGTCGGCGAGCGTTACAGAGTATA------------------------------------------------------TCCGGAGTGATTTGAAAACCTCAAAGTTGGATTTAGACAGCCTCCTTCGGTTGACTGAGCCCCTAGAA---------AGCGATGCTTTTGAGAACACACTAGTGGAAGACCAAGTTGTAAGTGCTTGCCCGATGATAAATACATCCCAGGCGTAATGTAAATCCTTTTTAATCACAGAAAAACGCCACAAAAATGGGAAGCCCACAGAAGGAGTTTACTAAACTCCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................AGTATA------------------------------------------------------TCCGGAGTGATTTGAAA..................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droMoj3

A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACACAGACGGAGCAGGAAAAAGCAGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

ATTTTGATTTATCCGACAGCGTAATGGCATTTCTACAGGTAAGTCATATCTTTTGCACCTCTATTGAGCAGATTAATCTGTTTATTTTTTAGAGTGACTTGGAAACCACACAATTGGATGCAGATAGTTTGTGGGAATTGGCTGAAACCAGTGAGAAGCGCAACCGTGATTCCTTTGAAAAGATA---------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

Generated: 05/17/2015 at 11:52 PM