ID:

dps_104

 Coordinate:

2:25161389-25161463 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.3 -21.9 -21.9 -21.8

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy1-I_Dpse-intLTRGypsy+
mature
  1. dps_104  2:25161392-25161411 -
  2. dps_104  2:25161440-25161459 -
  3. Unknown_group_134:586-605 -
  4. Unknown_group_134:1114-1133 -
star
  1. dps_104  2:25161392-25161411 -
  2. dps_104  2:25161440-25161459 -
  3. Unknown_group_134:586-605 -
  4. Unknown_group_134:1114-1133 -

Sense Strand Reads

TGTCACTGGTACATTGCTGGGTCTGGCGTGTTCGAGATTCTGGTGCGTTGTCACTGGTACGTTGCTGGGTCTGGCGTGTTCGAGATTCTGGTGCGTTGTCACTGGTACGTTGCTGGGTCTGGCGTGTTCGAGATTCTGGTGCGTTGTCACTGGTACACTGCTGGGTCTGGCGTGT
***************************************..((........(((.........(((((((((((((...........((((((......)))))).....)))))))))))))))).........))************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 V112
male body		 SRR902011
testis
 GSM343916
embryo
 M062
head
 M059
embryo
 GSM444067
head
......TGGTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 23 0 15 14.40 216 207 6 1 0 0 1 1 0
......................................................TGGTACGTTGCTGGGTCTGG..................................................................................................... 20 0 4 14.25 57 51 3 2 0 1 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGG..................................................... 20 0 4 14.25 57 51 3 2 0 1 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGG..... 20 0 1 11.00 11 11 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCGTGT................................................................................................................................................ 25 0 3 11.00 33 32 0 1 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTG...... 19 0 1 8.00 8 8 0 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGCG... 22 0 1 7.00 7 6 1 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGCG................................................... 22 0 4 6.75 27 24 1 2 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGCG................................................................................................... 22 0 4 6.75 27 24 1 2 0 0 0 0 0
......TGGTACATTGCTGGGTCTG...................................................................................................................................................... 19 0 20 5.95 119 118 1 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGCGT.................................................................................................. 23 0 4 5.75 23 20 2 1 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGCGT.................................................. 23 0 4 5.75 23 20 2 1 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTG...................................................... 19 0 4 5.25 21 21 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTG...................................................................................................... 19 0 4 5.25 21 21 0 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGCGTGT 25 0 1 5.00 5 5 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGC.................................................................................................... 21 0 4 5.00 20 17 1 1 0 0 1 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGC.................................................... 21 0 4 5.00 20 17 1 1 0 0 1 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGCGT.. 23 0 1 4.00 4 4 0 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGC.... 21 0 1 4.00 4 4 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCGTG................................................................................................................................................. 24 0 15 3.00 45 40 3 1 0 0 0 0 1
......................................................................................................TGGTACGTTGCTGGGTCTGGCGTG................................................. 24 0 4 3.00 12 10 2 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGCGTG................................................................................................. 24 0 4 3.00 12 10 2 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGCGTG. 24 0 1 3.00 3 3 0 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGT.... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCG................................................................................................................................................... 22 0 20 1.75 35 0 0 0 35 0 0 0 0
......TGGTACATTGCTGGGTCTGGT.................................................................................................................................................... 21 1 20 1.30 26 26 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGG..................................................................................................................................................... 20 0 20 1.15 23 0 0 9 0 11 1 2 0
.......................................................................................................................................................GGTACACTGCTGGGTCTGGCGT.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................TTGTACACTGCTGGGTCTGGCGT.. 23 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGCGTGT................................................................................................ 25 0 2 1.00 2 2 0 0 0 0 0 0 0
...........................................................................................................................................TGCGTTGTCACTGGTACACTGCTGGG.......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGTT... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.......GGTACATTGCTGGGTCTGGC.................................................................................................................................................... 20 0 20 1.00 20 20 0 0 0 0 0 0 0
...........................................................................................................................................TGCGTTGTCACTGGTACACTGCTGG........... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGCGTGT................................................ 25 0 2 1.00 2 2 0 0 0 0 0 0 0
.......................................................................................................GGTACGTTGCTGGGTCTGG..................................................... 19 0 7 0.86 6 6 0 0 0 0 0 0 0
.......................................................GGTACGTTGCTGGGTCTGG..................................................................................................... 19 0 7 0.86 6 6 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCGTGTT............................................................................................................................................... 26 0 3 0.67 2 2 0 0 0 0 0 0 0
.......GGTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 22 0 16 0.63 10 10 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGT..................................................................................................................................................... 20 1 20 0.60 12 12 0 0 0 0 0 0 0
.......................................................GGTACGTTGCTGGGTCTGGCGTGT................................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGCGTA................................................. 24 1 4 0.50 2 0 2 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGCGTCCCC.............................................. 27 3 2 0.50 1 0 0 0 1 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGCGTCCCC.............................................................................................. 27 3 2 0.50 1 0 0 0 1 0 0 0 0
......TGGTACATTGCTGGGTCTGGC.................................................................................................................................................... 21 0 20 0.50 10 0 0 7 0 0 0 3 0
......................................................TGGTACGTTGCTGGGTCTGGCGTA................................................................................................. 24 1 4 0.50 2 0 2 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCAC...... 19 2 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................GGTACGTTGCTGGGTCTGGCGTGT................................................ 24 0 2 0.50 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCGTT................................................................................................................................................. 24 1 15 0.33 5 5 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCGGGCGT.................................................................................................................................................. 23 1 18 0.33 6 6 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCGTTT................................................................................................................................................ 25 1 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................GGTACGTTGCTGGGTCTG...................................................................................................... 18 0 7 0.29 2 2 0 0 0 0 0 0 0
.......................................................GGTACGTTGCTGGGTCTGGCGT.................................................................................................. 22 0 7 0.29 2 2 0 0 0 0 0 0 0
.......................................................................................................GGTACGTTGCTGGGTCTG...................................................... 18 0 7 0.29 2 2 0 0 0 0 0 0 0
.......................................................................................................GGTACGTTGCTGGGTCTGGCGT.................................................. 22 0 7 0.29 2 2 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCT....................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGT.................................................... 21 1 4 0.25 1 1 0 0 0 0 0 0 0
................................................................................................TGTCACTGGTACGTTGCTGGGT......................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGAA................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0 0
......TGGTACATTGCGGGGTCTGGCGT.................................................................................................................................................. 23 1 20 0.25 5 4 0 1 0 0 0 0 0
..................................................TCACTGGTACGTTGCTGGGT......................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0 0
........................................TGGTGCGTTGTCACTGGTACGTTGC.............................................................................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGT..................................................................................................... 20 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCT....................................................................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGCA................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGT.................................................................................................... 21 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGGCA................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTACTGGGTCTGGCG................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
...........................................................................................TGCGTTGTCACTGGTACGTTGCTG............................................................ 24 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTACTGGGTCTGGCG................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGT..................................................... 20 1 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................................................................CTGGTACGTTGCTGGGTCTGGA.................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGGAA................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................................................................ATGGTACGTTGCTGGGTCTGGCG................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................ATGGTACGTTGCTGGGTCTGGCG................................................................................................... 23 1 4 0.25 1 1 0 0 0 0 0 0 0
.....................................................CTGGTACGTTGCTGGGTCTGGA.................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGGACGTTGCTGGGTCTGGCG................................................................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
...........................................TGCGTTGTCACTGGTACGTTGCTG............................................................................................................ 24 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCTGGGTCTGTT.................................................... 21 2 4 0.25 1 0 0 0 1 0 0 0 0
..................................................................................................TCACTGGTACGTTGCTGGGT......................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................TGGGACGTTGCTGGGTCTGGCG................................................... 22 1 4 0.25 1 1 0 0 0 0 0 0 0
........................................................................................TGGTGCGTTGTCACTGGTACGTTGC.............................................................. 25 0 4 0.25 1 1 0 0 0 0 0 0 0
................................................TGTCACTGGTACGTTGCTGGGT......................................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCTGGGTCTGTT.................................................................................................... 21 2 4 0.25 1 0 0 0 1 0 0 0 0
................................................................................................................................CGAGATTCTGGTGCGTTGTCACTGG...................... 25 0 9 0.22 2 2 0 0 0 0 0 0 0
................................................................................CGAGATTCTGGTGCGTTGTCACTGG...................................................................... 25 0 9 0.22 2 2 0 0 0 0 0 0 0
................................CGAGATTCTGGTGCGTTGTCACTGG...................................................................................................................... 25 0 9 0.22 2 2 0 0 0 0 0 0 0
......................................................................................................TGGTATGTTGCTGGGTCTGG..................................................... 20 1 5 0.20 1 0 0 0 0 1 0 0 0
.....CTGGTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 24 0 15 0.20 3 3 0 0 0 0 0 0 0
......................................................TGGTACGCTGCTGGGTCTGGCG................................................................................................... 22 1 5 0.20 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGCTGCTGGGTCTGGCG................................................... 22 1 5 0.20 1 1 0 0 0 0 0 0 0
.....CTGGTACATTGCTGGGTCTGG..................................................................................................................................................... 21 0 20 0.20 4 4 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCA................................................................................................................................................... 22 1 20 0.20 4 4 0 0 0 0 0 0 0
......................................................TGGTATGTTGCTGGGTCTGG..................................................................................................... 20 1 5 0.20 1 0 0 0 0 1 0 0 0
......................................................................................................................................................TGGTACGCTGCTGGGTCTGGCG... 22 1 5 0.20 1 1 0 0 0 0 0 0 0
.......GGTACATTGCTGGGTCTGGCGTG................................................................................................................................................. 23 0 16 0.19 3 3 0 0 0 0 0 0 0
........GTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 21 0 17 0.18 3 3 0 0 0 0 0 0 0
........................................................................................................GTACGTTGCTGGGTCTGG..................................................... 18 0 7 0.14 1 1 0 0 0 0 0 0 0
.......................................................TGTACGTTGCTGGGTCTG...................................................................................................... 18 1 7 0.14 1 1 0 0 0 0 0 0 0
........................................................GTACGTTGCTGGGTCTGG..................................................................................................... 18 0 7 0.14 1 1 0 0 0 0 0 0 0
.......................................................................................................GGTACGTTGCTGGGTCTGGCG................................................... 21 0 7 0.14 1 1 0 0 0 0 0 0 0
.......................................................GGTACGTTGCTGGGTCTGGCG................................................................................................... 21 0 7 0.14 1 1 0 0 0 0 0 0 0
.......................................................................................................TGTACGTTGCTGGGTCTG...................................................... 18 1 7 0.14 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGTTT.................................................................................................................................................. 23 2 15 0.13 2 2 0 0 0 0 0 0 0
.....................................................................TCTGGCGTGTTCGAGATTCTGGTGCGT............................................................................... 27 0 8 0.13 1 1 0 0 0 0 0 0 0
.....................TCTGGCGTGTTCGAGATTCTGGTGCGT............................................................................................................................... 27 0 8 0.13 1 1 0 0 0 0 0 0 0
......................................................................................................TGGTACGTTGCGGGGTCTGT..................................................... 20 2 8 0.13 1 1 0 0 0 0 0 0 0
............................TGTTCGAGATTCTGGTGCGTTGTC........................................................................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0
............................................................................TGTTCGAGATTCTGGTGCGTTGTC........................................................................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0
......................................................TGGTACGTTGCGGGGTCTGT..................................................................................................... 20 2 8 0.13 1 1 0 0 0 0 0 0 0
............................................................................................................................TGTTCGAGATTCTGGTGCGTTGTC........................... 24 0 8 0.13 1 1 0 0 0 0 0 0 0
.....................................................................................................................TCTGGCGTGTTCGAGATTCTGGTGCGT............................... 27 0 8 0.13 1 1 0 0 0 0 0 0 0
.....................................................................TCTGGCGTGTTCGAGATTCTGGT................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0
.....................TCTGGCGTGTTCGAGATTCTGGT................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0
.....................................................................................................................TCTGGCGTGTTCGAGATTCTGGT................................... 23 0 9 0.11 1 1 0 0 0 0 0 0 0
...............................................................................................................................TCGAGATTCTGGTGCGTTGTCACTG....................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0
..............................................................................................................TGCTGGGTCTGGCGTGTTCGAGATTC....................................... 26 0 10 0.10 1 1 0 0 0 0 0 0 0
...............................................................................TCGAGATTCTGGTGCGTTGTCACTG....................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0
TGTCACTGGTACATTGCTGGG.......................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0
......TTGTACATTGCTGGGTCTGG..................................................................................................................................................... 20 1 20 0.10 2 0 0 0 0 0 0 2 0
.....GTGGTACATTGCTGGGTCTGGCG................................................................................................................................................... 23 1 20 0.10 2 2 0 0 0 0 0 0 0
...............................TCGAGATTCTGGTGCGTTGTCACTG....................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0
..............TGCTGGGTCTGGCGTGTTCGAGATTC....................................................................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0 0 0
..............................................................TGCTGGGTCTGGCGTGTTCGAGATTC....................................................................................... 26 0 10 0.10 1 1 0 0 0 0 0 0 0
........................................TGGTGCGTTGTCACTGGTACGTT................................................................................................................ 23 0 11 0.09 1 1 0 0 0 0 0 0 0
........................................................................................TGGTGCGTTGTCACTGGTACGTT................................................................ 23 0 11 0.09 1 1 0 0 0 0 0 0 0
......................................................................................................................................................TGGTACACTGCTGGGTCTGGCGTGG 25 1 13 0.08 1 1 0 0 0 0 0 0 0
.CTAGCTGGTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 28 3 15 0.07 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGGCTGGCGT.................................................................................................................................................. 23 1 15 0.07 1 1 0 0 0 0 0 0 0
......TGGCACATTGCTGGGTCTGGCGT.................................................................................................................................................. 23 1 15 0.07 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGGCTTT................................................................................................................................................. 24 2 15 0.07 1 1 0 0 0 0 0 0 0
.....TTGGTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 24 1 15 0.07 1 1 0 0 0 0 0 0 0
.......GGTACATTGCTGGGTCTGGCGTT................................................................................................................................................. 23 1 16 0.06 1 1 0 0 0 0 0 0 0
......TGGAACATTGCTGGGTCTGGCGT.................................................................................................................................................. 23 1 16 0.06 1 1 0 0 0 0 0 0 0
.....ATGGTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 24 1 16 0.06 1 1 0 0 0 0 0 0 0
......TGGTACATTGCAGGCTCTGGCGTG................................................................................................................................................. 24 2 18 0.06 1 0 0 1 0 0 0 0 0
.......GGTACATTGCTGGGTCGGGCGT.................................................................................................................................................. 22 1 19 0.05 1 1 0 0 0 0 0 0 0
...CACTGGTACATTGCTGGGTCTGG..................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0
....GATGGTACATTGCTGGGTCTGGCG................................................................................................................................................... 24 2 20 0.05 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGGCTGGC.................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0 0
..TCACTGGTACATTGCTGGGTC........................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................................................................GTTCGAGATTCTGGTGCGTTGTCA.......................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGCCTGG..................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0
......TGTTACATTGCTGGGTCTGGCG................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0
......CGGTACATTGCTGGGTCTGGCGT.................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0
........GTACATTGCTGGGTCTGGCG................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................................................................................GTTCGAGATTCTGGTGCGTTGTCA.......................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................TTCTGGTGCGTTGTCACTGGTACA.................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................GTTCGAGATTCTGGTGCGTTGTCA.......................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0 0 0
.............................ATTCGAGATTCTGGTGCGTTGTCA.......................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCAA...................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGTA.................................................................................................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0
.....................................................................................................................................TGCTGGTGCGTTGTCACTG....................... 19 1 20 0.05 1 1 0 0 0 0 0 0 0
......TGGTACATTGCTGGGTCTGTAC................................................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0 0
......TGGAACATTGCTGGGTCTGG..................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACAGTGACCATGTAACGACCCAGACCGCACAAGCTCTAAGACCACGCAACAGTGACCATGCAACGACCCAGACCGCACAAGCTCTAAGACCACGCAACAGTGACCATGCAACGACCCAGACCGCACAAGCTCTAAGACCACGCAACAGTGACCATGTGACGACCCAGACCGCACA
**************************************..((........(((.........(((((((((((((...........((((((......)))))).....)))))))))))))))).........))*************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 M059
embryo
 M062
head
 GSM444067
head
........................................................................................................................................ACCACGCAACAGTGACCATGTGAC............... 24 0 1 5.00 5 5 0 0 0 0 0
.........................................................................................................................................CCACGCAACAGTGACCATGTGAC............... 23 0 1 4.00 4 4 0 0 0 0 0
.......................................................................................................................................GACCACGCAACAGTGACCATGTGAC............... 25 0 1 3.00 3 3 0 0 0 0 0
.........................................................................................CCACGCAACAGTGACCATGCAAC............................................................... 23 0 11 2.45 27 25 0 0 1 0 1
.........................................CCACGCAACAGTGACCATGCAAC............................................................................................................... 23 0 11 2.45 27 25 0 0 1 0 1
..........................................................................................................................................CACGCAACAGTGACCATGTGAC............... 22 0 1 2.00 2 2 0 0 0 0 0
........................................................................................ACCACGCAACAGTGACCATGCAAC............................................................... 24 0 11 1.45 16 15 0 1 0 0 0
........................................ACCACGCAACAGTGACCATGCAAC............................................................................................................... 24 0 11 1.45 16 15 0 1 0 0 0
........................................................................CCGCACAAGCTCTAAGACCACGC................................................................................ 23 0 8 0.63 5 5 0 0 0 0 0
........................................................................................................................CCGCACAAGCTCTAAGACCACGC................................ 23 0 8 0.63 5 5 0 0 0 0 0
........................CCGCACAAGCTCTAAGACCACGC................................................................................................................................ 23 0 8 0.63 5 5 0 0 0 0 0
.........................................................................................................................................ACACGCAACAGTGACCATGTGAC............... 23 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................CACGCAACAGTGACCATGCAAC............................................................... 22 0 11 0.45 5 4 0 0 1 0 0
..........................................CACGCAACAGTGACCATGCAAC............................................................................................................... 22 0 11 0.45 5 4 0 0 1 0 0
.........................................................................................................................CGCACAAGCTCTAAGACCACGCA............................... 23 0 8 0.38 3 0 3 0 0 0 0
.........................CGCACAAGCTCTAAGACCACGCA............................................................................................................................... 23 0 8 0.38 3 0 3 0 0 0 0
.........................................................................CGCACAAGCTCTAAGACCACGCA............................................................................... 23 0 8 0.38 3 0 3 0 0 0 0
.....................................................................................AAGACCACGCAACAGTGACCATGCAAC............................................................... 27 0 11 0.27 3 3 0 0 0 0 0
...........................................................................................ACGCAACAGTGACCATGCAAC............................................................... 21 0 11 0.27 3 1 2 0 0 0 0
...........................................ACGCAACAGTGACCATGCAAC............................................................................................................... 21 0 11 0.27 3 1 2 0 0 0 0
.....................................AAGACCACGCAACAGTGACCATGCAAC............................................................................................................... 27 0 11 0.27 3 3 0 0 0 0 0
.........................................................................................CCACGCAACAGTGACCATGCAA................................................................ 22 0 11 0.27 3 3 0 0 0 0 0
.........................................CCACGCAACAGTGACCATGCAA................................................................................................................ 22 0 11 0.27 3 3 0 0 0 0 0
............................................................................................CGCAACAGTGACCATGCAACGAC............................................................ 23 0 4 0.25 1 1 0 0 0 0 0
..................................................AGTGACCATGCAACGACCCAGACCGC................................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0
..................................................................................................AGTGACCATGCAACGACCCAGACCGC................................................... 26 0 4 0.25 1 1 0 0 0 0 0
............................................CGCAACAGTGACCATGCAACGAC............................................................................................................ 23 0 4 0.25 1 1 0 0 0 0 0
.................................................................................................................................CTCTAAGACCACGCAACAGTGACCAT.................... 26 0 10 0.20 2 2 0 0 0 0 0
.................................CTCTAAGACCACGCAACAGTGACCAT.................................................................................................................... 26 0 10 0.20 2 2 0 0 0 0 0
.................................................................................CTCTAAGACCACGCAACAGTGACCAT.................................................................... 26 0 10 0.20 2 2 0 0 0 0 0
............................................................................................CGCAACAGTGACCATGCAAC............................................................... 20 0 11 0.18 2 2 0 0 0 0 0
.......................................GACCACGCAACAGTGACCATGCAAC............................................................................................................... 25 0 11 0.18 2 2 0 0 0 0 0
......................................AGACCACGCAACAGTGACCATGCAAC............................................................................................................... 26 0 11 0.18 2 2 0 0 0 0 0
......................................................................................AGACCACGCAACAGTGACCATGCAAC............................................................... 26 0 11 0.18 2 2 0 0 0 0 0
.......................................................................................GACCACGCAACAGTGACCATGCAAC............................................................... 25 0 11 0.18 2 2 0 0 0 0 0
............................................CGCAACAGTGACCATGCAAC............................................................................................................... 20 0 11 0.18 2 2 0 0 0 0 0
.............................................................................................................................................AAAACAGTGACCATGTGAC............... 19 2 6 0.17 1 1 0 0 0 0 0
...........................................................................................................................CACAAGCTCTAAGACCACGCAAC............................. 23 0 8 0.13 1 0 0 1 0 0 0
...........................CACAAGCTCTAAGACCACGCAAC............................................................................................................................. 23 0 8 0.13 1 0 0 1 0 0 0
..........................................................................GCACAAGCTCTAAGACCACGCAACAGTG......................................................................... 28 0 8 0.13 1 1 0 0 0 0 0
.......................ACCGCACAAGCTCTAAGACCACGCA............................................................................................................................... 25 0 8 0.13 1 1 0 0 0 0 0
........................CCGCACAAGCTCTAAGACCACGCA............................................................................................................................... 24 0 8 0.13 1 0 1 0 0 0 0
...........................................................................CACAAGCTCTAAGACCACGCAAC............................................................................. 23 0 8 0.13 1 0 0 1 0 0 0
..........................GCACAAGCTCTAAGACCACGCAACAGTG......................................................................................................................... 28 0 8 0.13 1 1 0 0 0 0 0
......................................................................................................................GACCGCACAAGCTCTAAGACCACGC................................ 25 0 8 0.13 1 1 0 0 0 0 0
........................................................................................................................CCGCACAAGCTCTAAGACCACTC................................ 23 1 8 0.13 1 0 0 0 0 1 0
........................................................................CCGCACAAGCTCTAAGACCACGCA............................................................................... 24 0 8 0.13 1 0 1 0 0 0 0
......................................................................GACCGCACAAGCTCTAAGACCACGC................................................................................ 25 0 8 0.13 1 1 0 0 0 0 0
..........................................................................................................................GCACAAGCTCTAAGACCACGCAA.............................. 23 0 8 0.13 1 1 0 0 0 0 0
..........................GCACAAGCTCTAAGACCACGCAA.............................................................................................................................. 23 0 8 0.13 1 1 0 0 0 0 0
..........................................................................GCACAAGCTCTAAGACCACGCAA.............................................................................. 23 0 8 0.13 1 1 0 0 0 0 0
.......................................................................ACCGCACAAGCTCTAAGACCACGCA............................................................................... 25 0 8 0.13 1 1 0 0 0 0 0
..........................................................................................................................GCACAAGCTCTAAGACCACGCAACAGTG......................... 28 0 8 0.13 1 1 0 0 0 0 0
........................................................................................................................CCGCACAAGCTCTAAGACCACGCA............................... 24 0 8 0.13 1 0 1 0 0 0 0
......................GACCGCACAAGCTCTAAGACCACGC................................................................................................................................ 25 0 8 0.13 1 1 0 0 0 0 0
.......................................................................................................................ACCGCACAAGCTCTAAGACCACGCA............................... 25 0 8 0.13 1 1 0 0 0 0 0
........................CCGCACAAGCTCTAAGACCACTC................................................................................................................................ 23 1 8 0.13 1 0 0 0 0 1 0
........................................................................CCGCACAAGCTCTAAGACCACTC................................................................................ 23 1 8 0.13 1 0 0 0 0 1 0
.............................CAAGCTCTAAGACCACGCAACAGT.......................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0
....................CAGACCGCACAAGCTCTAAGAC..................................................................................................................................... 22 0 10 0.10 1 1 0 0 0 0 0
....................................................................CAGACCGCACAAGCTCTAAGAC..................................................................................... 22 0 10 0.10 1 1 0 0 0 0 0
.............................................................................CAAGCTCTAAGACCACGCAACAGT.......................................................................... 24 0 20 0.10 2 0 2 0 0 0 0
....................................................................................................................CAGACCGCACAAGCTCTAAGAC..................................... 22 0 10 0.10 1 1 0 0 0 0 0
.............................................................................................................................CAAGCTCTAAGACCACGCAACAGT.......................... 24 0 20 0.10 2 0 2 0 0 0 0
.......................................GACCACGCAACAGTGACCATGCAA................................................................................................................ 24 0 11 0.09 1 1 0 0 0 0 0
.............................................GCAACAGTGACCATGCAAC............................................................................................................... 19 0 11 0.09 1 1 0 0 0 0 0
.................................GTCTAAGACCACGCAACAGTGACCA..................................................................................................................... 25 1 11 0.09 1 1 0 0 0 0 0
.......................................................................................GACCACGCAACAGTGACCATGCAA................................................................ 24 0 11 0.09 1 1 0 0 0 0 0
....................................................................................TAAGACCACGCAACAGTGACCATGCAAC............................................................... 28 0 11 0.09 1 1 0 0 0 0 0
.............................................................................................GCAACAGTGACCATGCAAC............................................................... 19 0 11 0.09 1 1 0 0 0 0 0
.................................................................................GTCTAAGACCACGCAACAGTGACCA..................................................................... 25 1 11 0.09 1 1 0 0 0 0 0
....................................TAAGACCACGCAACAGTGACCATGCAAC............................................................................................................... 28 0 11 0.09 1 1 0 0 0 0 0
.................................................................................................................................GTCTAAGACCACGCAACAGTGACCA..................... 25 1 11 0.09 1 1 0 0 0 0 0
........................................ACCACGCAACAGTGACCATGCAA................................................................................................................ 23 0 11 0.09 1 1 0 0 0 0 0
........................................................................................ACCACGCAACAGTGACCATGCAA................................................................ 23 0 11 0.09 1 1 0 0 0 0 0
...........................................................GCAACGACCCAGACCGCACAAGCTCT.......................................................................................... 26 0 13 0.08 1 0 1 0 0 0 0
...........................................................................................................GCAACGACCCAGACCGCACAAGCTCT.......................................... 26 0 13 0.08 1 0 1 0 0 0 0
.........................................CCACGCAACAGTGTCCATGCAAC............................................................................................................... 23 1 14 0.07 1 1 0 0 0 0 0
.........................................................................................CCACGCAACAGTGTCCATGCAAC............................................................... 23 1 14 0.07 1 1 0 0 0 0 0
.....GACCATGTAACGACCCAGACCGCAC................................................................................................................................................. 25 0 15 0.07 1 1 0 0 0 0 0
................GACCCAGACCGCACAAGCTC........................................................................................................................................... 20 0 16 0.06 1 1 0 0 0 0 0
................................................................................................................GACCCAGACCGCACAAGCTC........................................... 20 0 16 0.06 1 1 0 0 0 0 0
................................................................GACCCAGACCGCACAAGCTC........................................................................................... 20 0 16 0.06 1 1 0 0 0 0 0
.................................................................ACCCAGACCGCACAAGCTCT.......................................................................................... 20 0 17 0.06 1 1 0 0 0 0 0
.................................................................................................................ACCCAGACCGCACAAGCTCT.......................................... 20 0 17 0.06 1 1 0 0 0 0 0
.................ACCCAGACCGCACAAGCTCT.......................................................................................................................................... 20 0 17 0.06 1 1 0 0 0 0 0
...........................................................GCAACGACCCAGACCGCAC................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................TGCAACGACCCAGACCGCACAAGCGT........................................... 26 2 20 0.05 1 1 0 0 0 0 0
...................................CTAAGACCACGCAACAGTGACCAT.................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
...................................................................................CTAAGACCACGCAACAGTGACCAT.................................................................... 24 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................CTAAGACCACGCAACAGTGACCAT.................... 24 0 20 0.05 1 1 0 0 0 0 0
...................................................................................................................................CTAAGACCACGCAACAGTGACCATGT.................. 26 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................AGCTCTAAGACCACGCAACAGTGAC....................... 25 0 20 0.05 1 0 0 0 1 0 0
...........................................................................................................GCAACGACCCAGACCGCAC................................................. 19 0 20 0.05 1 1 0 0 0 0 0
....................................................................................TACGACCACGCAACAGTGACCA..................................................................... 22 1 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................AGACCACGCAACAGTGACCATGT.................. 23 0 20 0.05 1 1 0 0 0 0 0
..........................................................TGCAACGACCCAGACCGCACAAGCGT........................................................................................... 26 2 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 2:25161339-25161513 - dps_104 TGTCACTGGTACATTGCTGGGTCTGGCGTGTTCGAGA--------TTCTGGTGCGTTGTCACTGGTACG-TTGCTGG---GTCT-------GGCGTGTTCGAGATTCTGGTGCGTTGTCACTGGTACGTTGCTGGGTCTGGCGTGTTCGAGATTCTGGTGCGTTGTCACT--GGTACA---CTGC---TGGGTCTGGCGTGT
droPer2 scaffold_2634:2875-3049 - TGTCACTGGTACATTGCTGGGTCTGGCGGGTTCGAGA--------TTCTGGTGCGTTGTCACTGTTACG-TTGCTGG---GTCT-------GGCGAGTTCGAGATTCTGGTGCGTTGTCACTGTTACGTTGCTGGGTCTGGCGGGTTCGAGATTCTGGTGCGTTGTCACT--GTTACG---TTGC---GGGGTCTGGCGTGG
droKik1 scf7180000302760:10885-11047 + TGTCGGCCCTAAAATACTGCTGGTCGGGGTATCGTGCATCCTGTTAT--------------CTGGATCG-TTGCTGGCTGGTGC-------GGATTCTGTGGCTTCGATGGGGTCTGTTGTTTCCGAAGT-----GAACGCGTTTGT-------CAAAAGCGACGGCATA--GCTAAGTTGTTGT---TGGGACTGGTTAAT
droFic1 scf7180000454050:6665-6836 - GGTCGCCGCTGCGCCGTGGAGTCTGGGCTCGCTGAGA--------CTGGCGGGGCTGGTCGCCGCTGCG-CCGTGGG---GTCT-------GGGTTCGCTGAGTTTGGCGGGGCTGGTCGCCGCTGCGCCGTGGAGTTTGGGTTCGCTGAGCTTGGCGGGGCTGGTCGCC--GCTGCG---CCGT---TGGGTCC---GCGT
droEle1 scf7180000490295:64873-64931 + TGTAGGAGCCGGT-----GGGTCCGAGAGGTGGGCGA--------TCGCTGCTG----------------------------------------------------------------------------------------------------------------------------------TGGGCGCCGCTCGGATGA
droRho1 scf7180000777669:7212-7382 + CCGTGGGACGGCT-----TTGGGTGGTGTGTGCGCCA--------TCGTGGCGGCTTCTCCCTGCGTCGATTTGTGC---GCCTGCACGGCGGCTTGCTTCATCTGTGTGTGCGCCTGCACGGC--GGCTTCTGGGTCTGTCGTTGC----TTCCTGTTGCATTGTTCCTCTGGTTCT---GTGG---TG---AGGGGGCGG
droTak1 scf7180000414918:7969-8143 + GGTCGCCGCTGCGCCGTTGGAGCTGGACTTGTTGCGG--------GTGGCGGGGCTGGTCGCCGCTGCG-CTGCTGG---ACCT-------GGACTCGATGCGGTGGGCGGGGCTGGTCGCCGCTGCGCCGTTGGAGCTGGACTTGTTGCGGGTGGCGGGGCTGGTCGCC--GCTGCG---CCGT---TGGAGCTGGTATAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGTCACTGGTACATTGCTGGGTCTGGCGTGTTCGAGA--------TTCTGGTGCGTTGTCACTGGTACG-TTGCTGG---GTCT-------GGCGTGTTCGAGATTCTGGTGCGTTGTCACTGGTACGTTGCTGGGTCTGGCGTGTTCGAGATTCTGGTGCGTTGTCACT--GGTACA---CTGC---TGGGTCTGGCGTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......TGGTACATTGCTGGGTCTGGCGT.............................................................................................................................................................................231514.40216020711001600
..............................................................TGGTACG-TTGCTGG---GTCT-------GG.............................................................................................................20414.255705100102300
.........................................................................................................................TGGTACGTTGCTGGGTCTGG.............................................................20414.255705100102300
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGG.....20111.001101100000000
......TGGTACATTGCTGGGTCTGGCGTGT...........................................................................................................................................................................25311.003303200001000
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTG......1918.0080800000000
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGCG...2217.0070600000100
.........................................................................................................................TGGTACGTTGCTGGGTCTGGCG...........................................................2246.752702400002100
..............................................................TGGTACG-TTGCTGG---GTCT-------GGCG...........................................................................................................2246.752702400002100
......TGGTACATTGCTGGGTCTG.................................................................................................................................................................................19205.95119011800000100
..............................................................TGGTACG-TTGCTGG---GTCT-------GGCGT..........................................................................................................2345.752302000001200
.........................................................................................................................TGGTACGTTGCTGGGTCTGGCGT..........................................................2345.752302000001200
.........................................................................................................................TGGTACGTTGCTGGGTCTG..............................................................1945.252102100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------G..............................................................................................................1945.252102100000000
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGCGTGT2515.0050500000000
..............................................................TGGTACG-TTGCTGG---GTCT-------GGC............................................................................................................2145.002001701001100
.........................................................................................................................TGGTACGTTGCTGGGTCTGGC............................................................2145.002001701001100
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGCGT..2314.0040400000000
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGC....2114.0040400000000
......TGGTACATTGCTGGGTCTGGCGTG............................................................................................................................................................................24153.004504000011300
.........................................................................................................................TGGTACGTTGCTGGGTCTGGCGTG.........................................................2443.001201000000200
..............................................................TGGTACG-TTGCTGG---GTCT-------GGCGTG.........................................................................................................2443.001201000000200
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGCGTG.2413.0030300000000
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGT....2112.0020200000000
......TGGTACATTGCTGGGTCTGGCG..............................................................................................................................................................................22201.753500000000350
......TGGTACATTGCTGGGTCTGGT...............................................................................................................................................................................21201.302602600000000
......TGGTACATTGCTGGGTCTGG................................................................................................................................................................................20201.152300211109000
............................................................................................................................................................................GGTACA---CTGC---TGGGTCTGGCGT..2211.0010100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------GGCGTGT........................................................................................................2521.0020200000000
..............................................................................................................................................................TGCGTTGTCACT--GGTACA---CTGC---TGGG..........2611.0010100000000
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGTT...2211.0010100000000
.......GGTACATTGCTGGGTCTGGC...............................................................................................................................................................................20201.002002000000000
..............................................................................................................................................................TGCGTTGTCACT--GGTACA---CTGC---TGG...........2511.0010100000000
.........................................................................................................................TGGTACGTTGCTGGGTCTGGCGTGT........................................................2521.0020200000000
..........................................................................................................................GGTACGTTGCTGGGTCTGG.............................................................1970.8660600000000
...............................................................GGTACG-TTGCTGG---GTCT-------GG.............................................................................................................1970.8660600000000
......TGGTACATTGCTGGGTCTGGCGTGTT..........................................................................................................................................................................2630.6720200000000
.......GGTACATTGCTGGGTCTGGCGT.............................................................................................................................................................................22160.631001000000000
......TGGTACATTGCTGGGTCTGT................................................................................................................................................................................20200.601201200000000
...............................................................GGTACG-TTGCTGG---GTCT-------GGCGTGT........................................................................................................2420.5010100000000
.........................................................................................................................TGGTACGTTGCTGGGTCTGGCGTA.........................................................2440.5020000000200
......TGGTACATTGCTGGGTCTGGC...............................................................................................................................................................................21200.50100030007000
..............................................................TGGTACG-TTGCTGG---GTCT-------GGCGTA.........................................................................................................2440.5020000000200
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCAC......1920.5010100000000
..........................................................................................................................GGTACGTTGCTGGGTCTGGCGTGT........................................................2420.5010100000000
......TGGTACATTGCTGGGTCTGGCGTT............................................................................................................................................................................24150.3350500000000
...............................................................GGTACG-TTGCTGG---GTCT-------G..............................................................................................................1870.2920200000000
...............................................................GGTACG-TTGCTGG---GTCT-------GGCGT..........................................................................................................2270.2920200000000
..........................................................................................................................GGTACGTTGCTGGGTCTG..............................................................1870.2920200000000
..........................................................................................................................GGTACGTTGCTGGGTCTGGCGT..........................................................2270.2920200000000
.........................................................................................................................TGGTACGTTGCTGGGTCT...............................................................1840.2510100000000
.........................................................................................................................TGGTACGTTGCTGGGTCTGGT............................................................2140.2510100000000
...................................................................................................................TGTCACTGGTACGTTGCTGGGT.................................................................2240.2510100000000
.........................................................................................................................TGGTACGTTGCTGGGTCTGGAA...........................................................2240.2510100000000
..........................................................TCACTGGTACG-TTGCTGG---GT........................................................................................................................2040.2510100000000
................................................TGGTGCGTTGTCACTGGTACG-TTGC................................................................................................................................2540.2510100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------GT.............................................................................................................2040.2510100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------...............................................................................................................1840.2510100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------GGCA...........................................................................................................2240.2510100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------GGT............................................................................................................2140.2510100000000
.........................................................................................................................TGGTACGTTGCTGGGTCTGGCA...........................................................2240.2510100000000
..............................................................................................................TGCGTTGTCACTGGTACGTTGCTG....................................................................2440.2510100000000
.........................................................................................................................TGGTACGTTGCTGGGTCTGT.............................................................2040.2510100000000
........................................................................................................................CTGGTACGTTGCTGGGTCTGGA............................................................2240.2510100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------GGAA...........................................................................................................2240.2510100000000
.............................................................CTGGTACG-TTGCTGG---GTCT-------GGA............................................................................................................2240.2510100000000
...................................................TGCGTTGTCACTGGTACG-TTGCTG..............................................................................................................................2440.2510100000000
.........................................................................................................................TGGTACGTTGCTGGGTCTGTT............................................................2140.2510000000010
.....................................................................................................................TCACTGGTACGTTGCTGGGT.................................................................2040.2510100000000
...........................................................................................................TGGTGCGTTGTCACTGGTACGTTGC......................................................................2540.2510100000000
........................................................TGTCACTGGTACG-TTGCTGG---GT........................................................................................................................2240.2510100000000
..............................................................TGGTACG-TTGCTGG---GTCT-------GTT............................................................................................................2140.2510000000010
...................................................................................................................................................CGAGATTCTGGTGCGTTGTCACT--GG............................2590.2220200000000
...................................................................................................CGAGATTCTGGTGCGTTGTCACTGG..............................................................................2590.2220200000000
................................CGAGA--------TTCTGGTGCGTTGTCACTGG.........................................................................................................................................2590.2220200000000
.....CTGGTACATTGCTGGGTCTGGCGT.............................................................................................................................................................................24150.2030300000000
.....CTGGTACATTGCTGGGTCTGG................................................................................................................................................................................21200.2040400000000
......TGGTACATTGCTGGGTCTGGCA..............................................................................................................................................................................22200.2040400000000
.......GGTACATTGCTGGGTCTGGCGTG............................................................................................................................................................................23160.1930300000000
........GTACATTGCTGGGTCTGGCGT.............................................................................................................................................................................21170.1830300000000
...........................................................................................................................GTACGTTGCTGGGTCTGG.............................................................1870.1410100000000
................................................................GTACG-TTGCTGG---GTCT-------GG.............................................................................................................1870.1410100000000
..........................................................................................................................GGTACGTTGCTGGGTCTGGCG...........................................................2170.1410100000000
...............................................................GGTACG-TTGCTGG---GTCT-------GGCG...........................................................................................................2170.1410100000000
.................................................................................TCT-------GGCGTGTTCGAGATTCTGGTGCGT.......................................................................................2780.1310100000000
.....................TCTGGCGTGTTCGAGA--------TTCTGGTGCGT..................................................................................................................................................2780.1310100000000
............................TGTTCGAGA--------TTCTGGTGCGTTGTC..............................................................................................................................................2480.1310100000000
...............................................................................................TGTTCGAGATTCTGGTGCGTTGTC...................................................................................2480.1310100000000
...............................................................................................................................................TGTTCGAGATTCTGGTGCGTTGTC...................................2480.1310100000000
........................................................................................................................................TCTGGCGTGTTCGAGATTCTGGTGCGT.......................................2780.1310100000000
.................................................................................TCT-------GGCGTGTTCGAGATTCTGGT...........................................................................................2390.1110100000000
.....................TCTGGCGTGTTCGAGA--------TTCTGGT......................................................................................................................................................2390.1110100000000
........................................................................................................................................TCTGGCGTGTTCGAGATTCTGGT...........................................2390.1110100000000
..................................................................................................................................................TCGAGATTCTGGTGCGTTGTCACT--G.............................25200.1020200000000
.................................................................................................................................TGCTGGGTCTGGCGTGTTCGAGATTC...............................................26100.1010100000000
..................................................................................................TCGAGATTCTGGTGCGTTGTCACTG...............................................................................25200.1020200000000
TGTCACTGGTACATTGCTGGG.....................................................................................................................................................................................21200.1020200000000
...............................TCGAGA--------TTCTGGTGCGTTGTCACTG..........................................................................................................................................25200.1020200000000
..............TGCTGGGTCTGGCGTGTTCGAGA--------TTC..........................................................................................................................................................26100.1010100000000
.......................................................................TGCTGG---GTCT-------GGCGTGTTCGAGATTC...............................................................................................26100.1010100000000
................................................TGGTGCGTTGTCACTGGTACG-TT..................................................................................................................................23110.0910100000000
...........................................................................................................TGGTGCGTTGTCACTGGTACGTT........................................................................23110.0910100000000
.........................................................................................................................................................................T--GGTACA---CTGC---TGGGTCTGGCGTGG25130.0810100000000
.......GGTACATTGCTGGGTCTGGCGTT............................................................................................................................................................................23160.0610100000000
...CACTGGTACATTGCTGGGTCTGG................................................................................................................................................................................23200.0510100000000
..TCACTGGTACATTGCTGGGTC...................................................................................................................................................................................21200.0510100000000
................................................................................................GTTCGAGATTCTGGTGCGTTGTCA..................................................................................24200.0510100000000
........GTACATTGCTGGGTCTGGCG..............................................................................................................................................................................20200.0510000000100
................................................................................................................................................GTTCGAGATTCTGGTGCGTTGTCA..................................24200.0510100000000
........................................................................................................................................................TTCTGGTGCGTTGTCACT--GGTACA---.....................24200.0510100000000
.............................GTTCGAGA--------TTCTGGTGCGTTGTCA.............................................................................................................................................24200.0510100000000
......TGGTACATTGCTGGGTCAA.................................................................................................................................................................................19200.0510100000000
......TGGTACATTGCTGGGTCTGTA...............................................................................................................................................................................21200.0510100000000
......TGGTACATTGCTGGGTCTGTAC..............................................................................................................................................................................22200.0510100000000
droPer2
TGTCACTGGTACATTGCTGGGTCTGGCGGGTTCGAGA--------TTCTGGTGCGTTGTCACTGTTACG-TTGCTGG---GTCT-------GGCGAGTTCGAGATTCTGGTGCGTTGTCACTGTTACGTTGCTGGGTCTGGCGGGTTCGAGATTCTGGTGCGTTGTCACT--GTTACG---TTGC---GGGGTCTGGCGTGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......TGGTACATTGCTGGGTCTGGCG..............................................................................................................................................................................22203.05610592000
......TGGTACATTGCTGGGTCTGGC...............................................................................................................................................................................21203.00600600000
..............................................................TGTTACG-TTGCTGG---GTCT-------GG.............................................................................................................20161.25200171002
.........................................................................................................................TGTTACGTTGCTGGGTCTGG.............................................................20161.25200171002
.........................................................................................................................TGTTACGTTGCTGGGTCTGGCGG..........................................................2350.804030001
......TGGTACATTGCTGGGTCTG.................................................................................................................................................................................19200.80160160000
.........................................................................................................................TGTTACGTTGCTGGGTCTGGCGGG.........................................................2450.603030000
..............................................................TGTTACG-TTGCTGG---GTCT-------GGC............................................................................................................21160.386060000
.........................................................................................................................TGTTACGTTGCTGGGTCTGGC............................................................21160.386060000
.........................................................................................................................TGTTACGTTGCTGGGTCTGGCG...........................................................22160.193020001
..............................................................TGTTACG-TTGCTGG---GTCT-------GGCG...........................................................................................................22160.193020001
..........................................................................................................................GTTACGTTGCTGGGTCTGGCGG..........................................................22200.153030000
......TGGTACATTGCTGGGTCTGG................................................................................................................................................................................20200.153003000
..................................................................................................TCGAGATTCTGGTGCGTTGTCACTGT..............................................................................26150.132020000
...............................TCGAGA--------TTCTGGTGCGTTGTCACTGT.........................................................................................................................................26150.132020000
..................................................................................................................................................TCGAGATTCTGGTGCGTTGTCACT--GT............................26150.132020000
..............................................................TGTTACG-TTGCTGG---GTCT-------G..............................................................................................................19160.132010001
.........................................................................................................................TGTTACGTTGCTGGGTCTG..............................................................19160.132010001
.......GGTACATTGCTGGGTCTGGCGGGT...........................................................................................................................................................................24200.102020000
.....CTGGTACATTGCTGGGTCTGG................................................................................................................................................................................21200.102020000
.......GGTACATTGCTGGGTCTG.................................................................................................................................................................................18200.102200000
...................................................................................................................TGTCACTGTTACGTTGCTGGGTCT...............................................................24160.061010000
........................................................TGTCACTGTTACG-TTGCTGG---GTCT-------...............................................................................................................24160.061010000
.............................................TTCTGGTGCGTTGTCACTGTTACG-....................................................................................................................................24170.061010000
........................................................................................................TTCTGGTGCGTTGTCACTGTTACG..........................................................................24170.061010000
........................................................................................................................................................TTCTGGTGCGTTGTCACT--GTTACG---.....................24170.061010000
............................................................................................................................TACGTTGCTGGGTCTGGCGGGTTC......................................................24190.051010000
........GTACATTGCTGGGTCTGGCGGG............................................................................................................................................................................22200.051010000
......TGGTACATTGCTGGGTCTGGCGGGG...........................................................................................................................................................................25200.051010000
.................................................................................................................................TGCTGGGTCTGGCGGGTTC......................................................19200.051000001
.................TGGGTCTGGCGGGTTCGAGA--------TG...........................................................................................................................................................22200.051010000
...............................................................GTTACG-TTGCTGG---GTCT-------GG.............................................................................................................19200.051001000
.................................................................TACG-TTGCTGG---GTCT-------GGCG...........................................................................................................19200.051010000
......TGGTACATTGCTGGGTCTGGCA..............................................................................................................................................................................22200.051010000
...................................................................................................CGAGATTCTGGTGCGTTG.....................................................................................18200.051010000
...................................................................................................................................................CGAGATTCTGGTGCGTTG.....................................18200.051010000
..........................................................................................................................GTTACGTTGCTGGGTCTGGCGGG.........................................................23200.051010000
......TGGTACATTGCTGGGTCTGGCGGGTT..........................................................................................................................................................................26200.051010000
..........................................................................................................................GTTACGTTGCTGGGTCTGG.............................................................19200.051001000
............................................................................................................................TACGTTGCTGGGTCTGGCG...........................................................19200.051010000
..........................................................................................................................GTTACGTTGCTGGGTCTGGC............................................................20200.051010000
droKik1
TGTCGGCCCTAAAATACTGCTGGTCGGGGTATCGTGCATCCTGTTAT--------------CTGGATCG-TTGCTGGCTGGTGC-------GGATTCTGTGGCTTCGATGGGGTCTGTTGTTTCCGAAGT-----GAACGCGTTTGT-------CAAAAGCGACGGCATA--GCTAAGTTGTTGT---TGGGACTGGTTAATSizeHit CountTotal NormTotal
No Reads
droFic1
GGTCGCCGCTGCGCCGTGGAGTCTGGGCTCGCTGAGA--------CTGGCGGGGCTGGTCGCCGCTGCG-CCGTGGG---GTCT-------GGGTTCGCTGAGTTTGGCGGGGCTGGTCGCCGCTGCGCCGTGGAGTTTGGGTTCGCTGAGCTTGGCGGGGCTGGTCGCC--GCTGCG---CCGT---TGGGTCC---GCGTSizeHit CountTotal NormTotal
No Reads
droEle1
TGTAGGAGCCGGT-----GGGTCCGAGAGGTGGGCGA--------TCGCTGCTG----------------------------------------------------------------------------------------------------------------------------------TGGGCGCCGCTCGGATGASizeHit CountTotal NormTotal
No Reads
droRho1
CCGTGGGACGGCT-----TTGGGTGGTGTGTGCGCCA--------TCGTGGCGGCTTCTCCCTGCGTCGATTTGTGC---GCCTGCACGGCGGCTTGCTTCATCTGTGTGTGCGCCTGCACGGC--GGCTTCTGGGTCTGTCGTTGC----TTCCTGTTGCATTGTTCCTCTGGTTCT---GTGG---TG---AGGGGGCGGSizeHit CountTotal NormTotal
No Reads
droTak1
GGTCGCCGCTGCGCCGTTGGAGCTGGACTTGTTGCGG--------GTGGCGGGGCTGGTCGCCGCTGCG-CTGCTGG---ACCT-------GGACTCGATGCGGTGGGCGGGGCTGGTCGCCGCTGCGCCGTTGGAGCTGGACTTGTTGCGGGTGGCGGGGCTGGTCGCC--GCTGCG---CCGT---TGGAGCTGGTATAASizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:36 PM