ID:

dps_1032

 Coordinate:

3:5484847-5484997 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.3 -17.3 -16.9

Flybase annnotation

exon [dpse_GLEANR_14586:2]; CDS [Dpse\GA13230-cds]; intron [Dpse\GA13230-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GATGTCTTTTTAATGGATTGATGCTTGTTACGAAATGTGAACATGGGAATGCATTTGCTGCCCAAAATTTGACACAGTCACGCATATTCCGGGTTGGGTTTAGGGATTGGGATGTGTTGTGCAGTGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTAATCCAGAACTAACATGTTGTTTCGTTCCGCCACCATGCAGAGAGGGACTGGCAGCCAGCGCACATCTCTGACTAAGTCTGGGGGGGTGAC
**********************************************************************************************************************..........(((((..((((((((((((.(((......)))))))))))))))..............))))).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 GSM444067
head
 GSM343916
embryo
....................................................................................................TAGGGATTGGGTGGTGTTTT................................................................................................................................... 20 3 20 10.05 201 153 48 0 0
...................................................................................................CTAGGGATCGGGAGGTGTT..................................................................................................................................... 19 3 13 9.15 119 75 41 2 1
....................................................................................................TAGGGATCGGGAGGTGTT..................................................................................................................................... 18 2 6 4.67 28 26 2 0 0
...................................................................................................CTAGGGATCGGGGTGTGTT..................................................................................................................................... 19 3 14 4.00 56 24 32 0 0
...................................................................................................TTAGGGATTGGGTGGTGTT..................................................................................................................................... 19 2 4 2.50 10 5 5 0 0
...................................................................................................CTAGGGATTGGGAGGTGTT..................................................................................................................................... 19 2 2 1.50 3 1 2 0 0
.................................................................................................................................................................................................CCATGCAGAGAGGGACTGGCA..................................... 21 0 1 1.00 1 1 0 0 0
......................................................................................................................GTGCAGTGCCGTGGATCTGGT................................................................................................................ 21 0 1 1.00 1 0 1 0 0
..............................................................................................................................CCGTGGATCTGGTTTTGGGT......................................................................................................... 20 0 1 1.00 1 1 0 0 0
..........................................................................................................TTGGGATGTGTTGTGCAGTG............................................................................................................................. 20 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................ACATGTTGTTTCGTTCCGCC........................................................... 20 0 1 1.00 1 1 0 0 0
.............................ACGAAATGTGAACATGGGAAT......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..............................................................................................................GATGTGTTGTGCAGTGCCGTG........................................................................................................................ 21 0 1 1.00 1 0 1 0 0
.....................................................................................................................................TCTGGTTTTGGGTTTGGGG................................................................................................... 19 0 1 1.00 1 1 0 0 0
.......................................................................................................................TGCAGTGCCGTGGATCTGG................................................................................................................. 19 0 1 1.00 1 1 0 0 0
....................................................................................................TAGGGATTGGGGTGTGTT..................................................................................................................................... 18 1 1 1.00 1 0 1 0 0
....................................................................................................................TTGTGCAGTGCCGTGGATCTG.................................................................................................................. 21 0 1 1.00 1 1 0 0 0
..................................................................................................................TGTTGTGCAGTGCCGTGGAT..................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.............................................................................................TTGGGTCTAGGGATTGGGTGGTGT...................................................................................................................................... 24 3 1 1.00 1 0 1 0 0
...............................................................................................................ATGTGTTGTGCAGTGCCGTG........................................................................................................................ 20 0 1 1.00 1 1 0 0 0
....................................................ATTTGCTGCCCGAAATTTGA................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................TTCCGCCACCATGCAGAGAG.............................................. 20 0 1 1.00 1 1 0 0 0
...........AATGGATTGATGCTTGTTACG........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................................................TGGTTTTGGGTTTGGGGA.................................................................................................. 18 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................TGCAGAGAGGGACTGGCAGC................................... 20 0 1 1.00 1 1 0 0 0
......................................................TTGCTGCCCAAAATTTGACAC................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................ATCTGGTTTTGGGTTTGGGGA.................................................................................................. 21 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................AGAGGGACTGGCAGCCAGC............................... 19 0 1 1.00 1 1 0 0 0
.....................................................................................................................TGTGCAGTGCCGTGGATCT................................................................................................................... 19 0 1 1.00 1 1 0 0 0
.........................................................CTGCCCAAAATTTGACACAGT............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
.................................................................AGTTTGACACAGTCACGCATA..................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
............................................................................................................................TGCCGTGGATCTGGTTTTGGT.......................................................................................................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................CAGAACTAACGTGTTGTTTCGT................................................................. 22 1 1 1.00 1 1 0 0 0
................................AAATGTGAACATGGGAATGC....................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
.................................................................................................................GTGTTGTGCAGTGCCGTGGTT..................................................................................................................... 21 1 1 1.00 1 0 1 0 0
...........................................................................................................TGGGATGTGTTGTGCAGTGCC........................................................................................................................... 21 0 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................................AGGGACTGGCAGCCAGCGC............................. 19 0 1 1.00 1 1 0 0 0
....................................................................................................TAGGGATCGGGGTGTGTT..................................................................................................................................... 18 2 7 0.71 5 4 1 0 0
....................................................................................................TAGGGATTGGGCGGTGTT..................................................................................................................................... 18 2 5 0.60 3 3 0 0 0
...................................................................................................TTAGGGATTGGGTGGTGT...................................................................................................................................... 18 2 13 0.46 6 6 0 0 0
...................................................................................................CTAGGGATTGGGTTGTGT...................................................................................................................................... 18 2 9 0.44 4 2 2 0 0
...................................................................................................CTAGGGATTGGGTTGTGTTTT................................................................................................................................... 21 3 5 0.40 2 1 1 0 0
...................................................................................................CTAGGGATTGGGTTGTGTT..................................................................................................................................... 19 2 8 0.38 3 2 1 0 0
....................................................................................................TAGGGATCGGGTTGTGTTTT................................................................................................................................... 20 3 17 0.29 5 4 1 0 0
...................................................................................................TTAGGGATTGGGTGGTGTTTT................................................................................................................................... 21 3 11 0.27 3 2 1 0 0
.................................................................................................GTTTAGGGATCGGGTGGTGTT..................................................................................................................................... 21 3 4 0.25 1 1 0 0 0
...................................................................................................CTAGGGATTGGGGTGTGTT..................................................................................................................................... 19 2 4 0.25 1 1 0 0 0
...................................................................................................TTAGGGATTGGGGTTTGT...................................................................................................................................... 18 2 17 0.18 3 3 0 0 0
...................................................................................................TTAGGGATCGGGAGGTGTT..................................................................................................................................... 19 2 6 0.17 1 1 0 0 0
....................................................................................................TAGGGATCGGGGTGTGTTTT................................................................................................................................... 20 3 10 0.10 1 1 0 0 0
............................................................................................................................................................................................................GTCACTGACAGCCAGCGCAC........................... 20 3 13 0.08 1 1 0 0 0
.................................................................................................GTTTAGGGATCGGGTGGTGT...................................................................................................................................... 20 3 13 0.08 1 1 0 0 0
.................................................................................................GATTAGGGATTGGGTGGTGT...................................................................................................................................... 20 3 19 0.05 1 1 0 0 0
.....................................TGTACATAGGAATGCATT.................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0

Anti-sense strand reads

CTACAGAAAAATTACCTAACTACGAACAATGCTTTACACTTGTACCCTTACGTAAACGACGGGTTTTAAACTGTGTCAGTGCGTATAAGGCCCAACCCAAATCCCTAACCCTACACAACACGTCACGGCACCTAGACCAAAACCCAAACCCCTGTACAGATTAGGTCTTGATTGTACAACAAAGCAAGGCGGTGGTACGTCTCTCCCTGACCGTCGGTCGCGTGTAGAGACTGATTCAGACCCCCCCACTG
***********************************************************..........(((((..((((((((((((.(((......)))))))))))))))..............))))).********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 V112
male body		 M059
embryo
 GSM444067
head
........................................................................................................................................................TGGACAGCTTAGGTCTTG................................................................................. 18 2 3 2.67 8 8 0 0 0
..............................................................................................................................................................................................GGTGGTACGTCTCTCCCTGAC........................................ 21 0 1 2.00 2 2 0 0 0
...................................................................................................................................................................................................................CGTCGGTCGCGTGTAGAGAC.................... 20 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................................GCGGTGGTACGTCTCTCCCTG.......................................... 21 0 1 1.00 1 1 0 0 0
.......................................................................................................CCTAACCCTACACAACACGT................................................................................................................................ 20 0 1 1.00 1 1 0 0 0
.........................................................................TGTCAGTGCGTATAAGGCCCA............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
...........................................................................................CCAACCCAAATCCCTAACCCTA.......................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................TGCGTGTAGAGACTGGTTCAGA........... 22 2 1 1.00 1 0 1 0 0
...................................................................................................................CAACACGTCACGGCACCTAGA................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..........................................................................GTCAGTGCGTATAAGGCCCAA............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................CGGTGGTACGTCTCTCCCTGA......................................... 21 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................TGGTACGTCTCTCCCCGACCG...................................... 21 1 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................GGTACGTCTCTCCCTGACCG...................................... 20 0 1 1.00 1 1 0 0 0
..............................................................................................................................GGCACCTAGGCCAAAACCCAA........................................................................................................ 21 1 1 1.00 1 1 0 0 0
............................................................GGGTTTTAAACTGTGTCAG............................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................TGAAGCAAGGCGGTGGTACGTC.................................................. 22 2 1 1.00 1 0 1 0 0
..............................................................................................................................................................................................GGTGGTACGTCTCTCCCTGA......................................... 20 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................GGTCTTGATTGCACAACAA..................................................................... 19 1 1 1.00 1 0 0 1 0
...................................................................................................................................................................................CAACCCAAGGCGGTCGTACG.................................................... 20 3 3 0.33 1 0 0 1 0
...................................................................................................................................CTAGACCGAAACGCAAACC..................................................................................................... 19 2 6 0.17 1 0 0 0 1
..................................................................................................................................................................................................GTACGCCTCTCCCTTTCCGT..................................... 20 3 15 0.07 1 1 0 0 0
...................................................................................................................................................................................CAACCCAAGGCGGTCGTAC..................................................... 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:5484797-5485047 - dps_1032 GATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCAT-TTGCTGCCC-AAAATTTGACACAGTCACGCATAT---TC-----C-G-GGTTGGGTTTA------------------------------------------------------------GG---GATTGGGAT-----GTGTTGTGCA------------------G------TGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA----ATCCAGAA------CTAACATGTT----------GTT-------TCGTT-CCGCCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCT---GGG------GGGGTGAC
droPer2 scaffold_2:5684315-5684587 - GATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCAT-TTGCTGCCC-GAAATTTGACACTGTCACGCATAT---CC-----C-GGCCAGGCATCAGTT-T----------TGGGTTGGGTTTA---------------------------------GG---GATTGGGATGTGTTGTGTTGTGCA------------------G------TGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA----ATCCAGAA------CTAACGTGTT----------GTT-------TCGTT-CCGCCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCT---GGG------GGGGTGAC
droWil2 scf2_1100000004382:1022399-1022621 - GATGTGATTTTAATGAATTGA---TGATGCTTCTA--AC-----------------------------------------------ATTTAGACAAGTCACGCATAG--TCA-----T-T-CGGCGCTGGTTTT-T----------GGGGTTGTGGTTG-----------------------------------GTG--------------GGTTGGG--A------------------G------GATTATTCTTCTAC--------------------CTCTTCTTGGCCTAATG---TTTAA----CATATTA--CGTTTT-------G-ATTTCTTCCATCATGCAGAAGCAGTC-------AACCAGCCAGCGGGCATCTCTAAGTAAATCC---ACAATGGGCGGGGTGAC
droVir3 scaffold_12875:16885507-16885742 + -ATGTGCGCCTAATGAACGG----GAATGCTTCGA--GC-----------ATGGGTAGAA-----------------TTACA-AAAATTTGTCCAAGTCACGCATATGGGCG---ATAGC-TG-GG-----------CGAGGGGCG--GATGGT-------------------------------GCCAGAG---CG--------------AA-------TCCCCTGGAGTTAGTGCCAGTTA---------------------------------------------GTCGCAT-GTAATGTAA----TAGATTC--TGTTTCGACACTTTCGTT-TTGTCACCATGCAGAGGCAGAC-------GAGCAGCCAGCGCACATCCCTGACCAAGTGC---AATGT---GG------C
droMoj3 scaffold_6496:11117402-11117663 - TATGTTTATTTAATAAGCGG----TAATGTTTCCA--ACATGCTCCGAATC-----------------GAAT-CAAGTATCC-AAAATTTGTGAAAGTCACGCATATGGGCTACGATAGC-CG-GC-TGGCTGG-T----------TGGGTGGTTGTTAGGTGGTTAAGTGGGAGTGGGTGTGAATCCACAG---CG--------------A--------------------------------------------------------------------GTA----TGGAACAT-CTAATGTAA----TACATTC--TTTTTCGACACTTTCGTT-TTGTCACCATGCAGCGGCAGGT-------GAGCAGCCAGCGCACATCCCTGACCAAGTCC---AATGG---GG------C
droGri2 scaffold_15245:5679587-5679852 + TATGTGGGTTTAATAAACGG------ATACTTGTTTTCCGCTATCCGAACATGGGTGGAAA-----------------GTAA-CGAATTTGTCAAAGTCACGCATATGATTG----TTGC-TG-GGCTGCCAGA-T----------GGGGTCGA--------------------------------------GGGCG--------------GGTTGGGGGAGCTGTGGAGCATGTGGCATTTAGCAT-----------------------------GTA-GCA----TGTAGCAT-GTA--TTATAAT--CCATTT--TGTTTCGACACTTTCGTT-TTGTCACCATGCAGAGGCAGAT-------AAGCAGCCAGCGCGATTCCCTGACCAAGTGTGCCA---------GTGTGGT
droAna3 scaffold_13266:16178871-16179073 - GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACAAGCG---GAT-------ATGT-GTCCTGTCCGGGAATTTAGCCAAGTCACGCGACC-----------------GACCCCTAT--G-----------------------------------------------------------G---------------GGAT-----A------------GTGGTAT------CC----------------------------GTGTCTC----AGCCATTA------CTAACATGTCTATTT--CGTTTC-------ACGTT-CCGCGACTATGCAGAAG---GC-------AGGCAGCCAGCGTGGATCGTTGACCAAGTC---------------------
droBip1 scf7180000396567:659342-659558 - GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACAAGCG---AAT-------ATGT-GTCCTGTCCGGAAATTTAGCCAAGTCACGCGACT--CCT-------------------AAT-G-----------------------------------------------------------TG----G---------GGA-T-GGTA------------------T------CC----------------------------TTGTCTG----AGCCATTA------CTAACATGTCTATTT--CGTTTC-------ACGTT-TCGCCACTATGCAGAAGCAGTC-------AGGCAGCCAGCGTGGATCATTGACCAAGTCG---CACAT---GGGCATGGC
droKik1 scf7180000302471:477086-477295 - GATGTCTTTTTAATGAATTG------ATGCATGTA--ACGAAATGTGAACATGGC---AAT-------GCATGCGCCTGTCTAGAAAATTGGCCAAGTCACGAACAT---CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCA----TGCCCATA------CTAACAGCCACACTTGTGGTTTC---CTTTCCATT-TCGCCACCATGCAGAAGCAG-CAGCTGAGCAACAGCCAGCGCGGATCGCTGACCAAGTCG---CATAT---AGGCGTGGC
droFic1 scf7180000453215:355839-356056 + GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAT-------GTAT-GGTTGGTCT-GAAATTTGGCCAAGTCACGCCATC--CCT-----T-G-TGGGAACTCAGT--G-----------------------------------------------------------GG--------------GGTACAGGGA------------------G------T-----------------------------GTGTCTA----AGCCGAAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCACCATGCAGAAG---GC-------AGGCAGCCAGCGCGGATCGCTGACCAAGTCG---CATAT---AGG------
droEle1 scf7180000491258:183963-184207 + GATATCTTTTTAATGAATTGATATTGATGCTTGTA--ACGGAATGTGAACACGAG---AATGGAATGTATGT-GGTTCGTCT-GAAAATTGGCCAAGTCACGCAAATAGTCT-----T-G-TGGGGATTCTAATCG-----------------------------------------------------------GG--------------GGTTTTGAGG----------GTTTGAT-A------T-----------------------------ATATCTG----CGGTTGAA------CTAACATGCATATTT--GGTTTC-------CCATT-TCATCACCATGCAGAGGCCAGC-------GGGCAGCCAGCGCGGATCGCTGACCAAGTCA---CATTT---GAG------
droRho1 scf7180000774573:101293-101521 - GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAAAGTGAACACGAG---AAT-------GTAT-GGTTTGTCT-GAAATTTTGCCAAGTCACGCGAA---TCT-----C-G-TGGTGATTCTATG-GGCGGGGGGCG-----------------------------------------------------------------TTTATATGTA------------------G------T-----------------------------GTGCCTG----CGGCAGAA------CTAACATGCATGTTC--GGTTTC-------CCATT-TCATCACCATGCAGAGGCCAGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCG---CACAT---TGG------
droBia1 scf7180000302291:1696713-1696927 - GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAT------GGTAT-GGATTGTCT-GAAATTTGGCCAAGTCACGCCA----TCT-----T-G-AGGGCGTTCTGTG-G-----------------------------------------------------------G---------------GGAT-----A------------------A------T-----------------------------GTGTCTA----AGGCATTA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGTCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGTTCGCTGACCAAGTCC---CACAT---AGG------
droTak1 scf7180000415088:279218-279437 + GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAC-------GTAT-GGATTGCCG-AAAATTGATCCAAGTCACGCCATA--TCT-----T-G-GGGGAGTTCTATT-G-----------------------------------------------------------GG--------------GGAT-----A------------------T------A-----------------------------GTGTCTA----AGGTTTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCATCATGCAGAGGCCAGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGT---
droEug1 scf7180000409474:2691866-2692083 - GATGTCATTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACACGGG---AAT-------GTAT-AGATTGACT-GAAATTTGGC--AGTCACGCCATA--TCT-----T-G-TGGGGGTTCTATT-G-----------------------------------------------------------GG--------------AAATT-----------------------T------A-----------------------------GTGTCTT----AGGTTTAA------CAACCATGCATGTTC--GGTTTC-------CCATT-TCATCATCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCG---CATAT---AGGTGT---
dm3 chr2R:3854852-3855089 - GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CATAC-GGTTCGTCT-AAAATTTGACGAAGTCACGCCATT--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CTCTGTGCTTCTAG--------------------CTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGTTTC
droSim2 2r:4678366-4678603 - dsi_12637 GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CACAC-GGTTCGTCT-AAAATTTGGCCAAGTCACGCCATT--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CGCTGTGGTTCTAA--------------------CTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGTTTC
droSec2 scaffold_1:1492166-1492402 - -AGGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CACAC-GGTTCGTCT-AAAATTTGGCAAAGTCACGCCATT--TCT-----T-G-TGGGGATTCAATG-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CGCTGTGGTTCTAA--------------------CTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGTTTC
droYak3 2L:16511168-16511393 - GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CACAC-TGTTTGTCG-AAAATTTGGCTAAGTCACGCCATA--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTATGGGCA------------------T------C-----------------------------GTGGCTG----TGGCCAAA------CTAACATGCATATTT--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGT---
droEre2 scaffold_4929:18773243-18773460 + GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACG---------------------GTTCGTCT-AAAATTTGGCGAAGTCACGCCATA--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTATGGATA------------------T------C-----------------------------GTGGCTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---CGGCGTTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCAT-TTGCTGCCC-AAAATTTGACACAGTCACGCATAT---TC-----C-G-GGTTGGGTTTA------------------------------------------------------------GG---GATTGGGAT-----GTGTTGTGCA------------------G------TGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA----ATCCAGAA------CTAACATGTT----------GTT-------TCGTT-CCGCCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCT---GGG------GGGGTGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................CCATGCAGAGAGGGAC-------TGGCA..............................................2111.0010100000000
........................................................................................................................................................................................................................GTGCA------------------G------TGCCGTGGATCTGGT............................................................................................................................................................2111.0010000001000
........................................................................................................................................................................................................................................................CCGTGGATCTGGTTTTGGGT.....................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................TTGGGAT-----GTGTTGTGCA------------------G------TG.........................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................ACATGTT----------GTT-------TCGTT-CCGCC...........................................................................2011.0010100000000
.....................................ACGAAATGTGAACATGGG---AAT-------.............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................GAT-----GTGTTGTGCA------------------G------TGCCGTG....................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................TCTGGTTTTGGGTTTGGGG...............................................................................................................................................1911.0010100000000
.........................................................................................................................................................................................................................TGCA------------------G------TGCCGTGGATCTGG.............................................................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................TTGTGCA------------------G------TGCCGTGGATCTG..............................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................TGTTGTGCA------------------G------TGCCGTGGAT.................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................AT-----GTGTTGTGCA------------------G------TGCCGTG....................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................TT-CCGCCACCATGCAGAGAG..............................................................2011.0010100000000
...........AATGGATTG------ATGCTTGTT--ACG.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................TGGTTTTGGGTTTGGGGA..............................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................TGCAGAGAGGGAC-------TGGCAGC............................................2011.0010100000000
.........................................................................TTGCTGCCC-AAAATTTGACAC..................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................ATCTGGTTTTGGGTTTGGGGA..............................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................AGAGGGAC-------TGGCAGCCAGC........................................1911.0010100000000
.......................................................................................................................................................................................................................TGTGCA------------------G------TGCCGTGGATCT...............................................................................................................................................................1911.0010100000000
............................................................................CTGCCC-AAAATTTGACACAGT...............................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................TGCCGTGGATCTGGTTTTGGT......................................................................................................................................................2111.0010100000000
........................................AAATGTGAACATGGG---AAT-------GC...........................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
........................................................................................................................................................................................................TGGGAT-----GTGTTGTGCA------------------G------TGCC.......................................................................................................................................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................AGGGAC-------TGGCAGCCAGCGC......................................1911.0010100000000
droPer2
GATGTCTTTTTAATGGATTG------ATGCTTGTT--ACGAAATGTGAACATGGG---AAT-------GCAT-TTGCTGCCC-GAAATTTGACACTGTCACGCATAT---CC-----C-GGCCAGGCATCAGTT-T----------TGGGTTGGGTTTA---------------------------------GG---GATTGGGATGTGTTGTGTTGTGCA------------------G------TGCCGTGGATCTGGTTTTGGGTTTGGGGACATGTCTA----ATCCAGAA------CTAACGTGTT----------GTT-------TCGTT-CCGCCACCATGCAGAGAGGGAC-------TGGCAGCCAGCGCACATCTCTGACTAAGTCT---GGG------GGGGTGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................TGGGTTGGGTTTA---------------------------------GG---GATTG.......................................................................................................................................................................................................................2011.001000001
.......................................................................................................................................................TGGGTTTA---------------------------------GG---GATTGGGATG..................................................................................................................................................................................................................2011.001000001
...................................................................................................................................................................................................................................................................................................................................................................................GCCAGCGCACATCTCTGACTAAGTC.....................2511.001100000
....................................................................................................CGCATAT---CC-----C-GGCCAGGCAT................................................................................................................................................................................................................................................................................................2011.001000010
................................................................................................................................................................................................................GTTGTGTTGTGCA------------------G------TGCCGT.....................................................................................................................................................................2011.001000001
..................................................................................................................................................................................................................................................................................................................................................CGCCACCATGCAGAGAGGG............................................................1911.001000100
droWil2
GATGTGATTTTAATGAATTGA---TGATGCTTCTA--AC-----------------------------------------------ATTTAGACAAGTCACGCATAG--TCA-----T-T-CGGCGCTGGTTTT-T----------GGGGTTGTGGTTG-----------------------------------GTG--------------GGTTGGG--A------------------G------GATTATTCTTCTAC--------------------CTCTTCTTGGCCTAATG---TTTAA----CATATTA--CGTTTT-------G-ATTTCTTCCATCATGCAGAAGCAGTC-------AACCAGCCAGCGGGCATCTCTAAGTAAATCC---ACAATGGGCGGGGTGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................GGGTTGTGGTTG-----------------------------------GTG--------------GGTTG.........................................................................................................................................................................................................2011.00101000
.....................................................................................................................................T-T----------GGGGTTGTGGTTG-----------------------------------GTG--------------GGT...........................................................................................................................................................................................................2111.00100100
........................................................................................................................................................GTGGTTG-----------------------------------GTG--------------GGTTGGG--A------------------G------GA.........................................................................................................................................................................2111.00100001
droVir3
-ATGTGCGCCTAATGAACGG----GAATGCTTCGA--GC-----------ATGGGTAGAA-----------------TTACA-AAAATTTGTCCAAGTCACGCATATGGGCG---ATAGC-TG-GG-----------CGAGGGGCG--GATGGT-------------------------------GCCAGAG---CG--------------AA-------TCCCCTGGAGTTAGTGCCAGTTA---------------------------------------------GTCGCAT-GTAATGTAA----TAGATTC--TGTTTCGACACTTTCGTT-TTGTCACCATGCAGAGGCAGAC-------GAGCAGCCAGCGCACATCCCTGACCAAGTGC---AATGT---GG------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........CTAATGAACGG----GAATGCTTCGA--GC-----------...............................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................T-------------------------------GCCAGAG---CG--------------AA-------TCCCCA...............................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
droMoj3
TATGTTTATTTAATAAGCGG----TAATGTTTCCA--ACATGCTCCGAATC-----------------GAAT-CAAGTATCC-AAAATTTGTGAAAGTCACGCATATGGGCTACGATAGC-CG-GC-TGGCTGG-T----------TGGGTGGTTGTTAGGTGGTTAAGTGGGAGTGGGTGTGAATCCACAG---CG--------------A--------------------------------------------------------------------GTA----TGGAACAT-CTAATGTAA----TACATTC--TTTTTCGACACTTTCGTT-TTGTCACCATGCAGCGGCAGGT-------GAGCAGCCAGCGCACATCCCTGACCAAGTCC---AATGG---GG------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TATGTGGGTTTAATAAACGG------ATACTTGTTTTCCGCTATCCGAACATGGGTGGAAA-----------------GTAA-CGAATTTGTCAAAGTCACGCATATGATTG----TTGC-TG-GGCTGCCAGA-T----------GGGGTCGA--------------------------------------GGGCG--------------GGTTGGGGGAGCTGTGGAGCATGTGGCATTTAGCAT-----------------------------GTA-GCA----TGTAGCAT-GTA--TTATAAT--CCATTT--TGTTTCGACACTTTCGTT-TTGTCACCATGCAGAGGCAGAT-------AAGCAGCCAGCGCGATTCCCTGACCAAGTGTGCCA---------GTGTGGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACAAGCG---GAT-------ATGT-GTCCTGTCCGGGAATTTAGCCAAGTCACGCGACC-----------------GACCCCTAT--G-----------------------------------------------------------G---------------GGAT-----A------------GTGGTAT------CC----------------------------GTGTCTC----AGCCATTA------CTAACATGTCTATTT--CGTTTC-------ACGTT-CCGCGACTATGCAGAAG---GC-------AGGCAGCCAGCGTGGATCGTTGACCAAGTC---------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................AACAAGCG---GAT-------ATGT-GTCCTG..................................................................................................................................................................................................................................................................................................................................................2111.001100000
droBip1
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACAAGCG---AAT-------ATGT-GTCCTGTCCGGAAATTTAGCCAAGTCACGCGACT--CCT-------------------AAT-G-----------------------------------------------------------TG----G---------GGA-T-GGTA------------------T------CC----------------------------TTGTCTG----AGCCATTA------CTAACATGTCTATTT--CGTTTC-------ACGTT-TCGCCACTATGCAGAAGCAGTC-------AGGCAGCCAGCGTGGATCATTGACCAAGTCG---CACAT---GGGCATGGCSizeHit CountTotal NormTotal
No Reads
droKik1
GATGTCTTTTTAATGAATTG------ATGCATGTA--ACGAAATGTGAACATGGC---AAT-------GCATGCGCCTGTCTAGAAAATTGGCCAAGTCACGAACAT---CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCA----TGCCCATA------CTAACAGCCACACTTGTGGTTTC---CTTTCCATT-TCGCCACCATGCAGAAGCAG-CAGCTGAGCAACAGCCAGCGCGGATCGCTGACCAAGTCG---CATAT---AGGCGTGGCSizeHit CountTotal NormTotal
No Reads
droFic1
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAT-------GTAT-GGTTGGTCT-GAAATTTGGCCAAGTCACGCCATC--CCT-----T-G-TGGGAACTCAGT--G-----------------------------------------------------------GG--------------GGTACAGGGA------------------G------T-----------------------------GTGTCTA----AGCCGAAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCACCATGCAGAAG---GC-------AGGCAGCCAGCGCGGATCGCTGACCAAGTCG---CATAT---AGG------SizeHit CountTotal NormTotal
No Reads
droEle1
GATATCTTTTTAATGAATTGATATTGATGCTTGTA--ACGGAATGTGAACACGAG---AATGGAATGTATGT-GGTTCGTCT-GAAAATTGGCCAAGTCACGCAAATAGTCT-----T-G-TGGGGATTCTAATCG-----------------------------------------------------------GG--------------GGTTTTGAGG----------GTTTGAT-A------T-----------------------------ATATCTG----CGGTTGAA------CTAACATGCATATTT--GGTTTC-------CCATT-TCATCACCATGCAGAGGCCAGC-------GGGCAGCCAGCGCGGATCGCTGACCAAGTCA---CATTT---GAG------SizeHit CountTotal NormTotal
No Reads
droRho1
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAAAGTGAACACGAG---AAT-------GTAT-GGTTTGTCT-GAAATTTTGCCAAGTCACGCGAA---TCT-----C-G-TGGTGATTCTATG-GGCGGGGGGCG-----------------------------------------------------------------TTTATATGTA------------------G------T-----------------------------GTGCCTG----CGGCAGAA------CTAACATGCATGTTC--GGTTTC-------CCATT-TCATCACCATGCAGAGGCCAGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCG---CACAT---TGG------SizeHit CountTotal NormTotal
No Reads
droBia1
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAT------GGTAT-GGATTGTCT-GAAATTTGGCCAAGTCACGCCA----TCT-----T-G-AGGGCGTTCTGTG-G-----------------------------------------------------------G---------------GGAT-----A------------------A------T-----------------------------GTGTCTA----AGGCATTA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGTCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGTTCGCTGACCAAGTCC---CACAT---AGG------SizeHit CountTotal NormTotal
No Reads
droTak1
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGAATGTGAACACGGG---AAC-------GTAT-GGATTGCCG-AAAATTGATCCAAGTCACGCCATA--TCT-----T-G-GGGGAGTTCTATT-G-----------------------------------------------------------GG--------------GGAT-----A------------------T------A-----------------------------GTGTCTA----AGGTTTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCATCATGCAGAGGCCAGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGT---SizeHit CountTotal NormTotal
No Reads
droEug1
GATGTCATTTTAATGAATTG------ATGCTTGTA--ACGAAATGTGAACACGGG---AAT-------GTAT-AGATTGACT-GAAATTTGGC--AGTCACGCCATA--TCT-----T-G-TGGGGGTTCTATT-G-----------------------------------------------------------GG--------------AAATT-----------------------T------A-----------------------------GTGTCTT----AGGTTTAA------CAACCATGCATGTTC--GGTTTC-------CCATT-TCATCATCATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCG---CATAT---AGGTGT---SizeHit CountTotal NormTotal
No Reads
dm3
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CATAC-GGTTCGTCT-AAAATTTGACGAAGTCACGCCATT--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CTCTGTGCTTCTAG--------------------CTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGTTTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................ACGCCATT--TCT-----T-G-TGGGGATT................................................................................................................................................................................................................................................................................................21117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GAATTG------ATGCTTGTA--ACGGGA......................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TG------ATGCTTGTA--ACGGGATGTG..................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000
.....................................ACGGGATGTGAACACGGG---AAC------..............................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TT-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CTCTG......................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AATTG------ATGCTTGTA--ACGGGAT.....................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CATCGACATGCAGAGGCCGGC-------...................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................GTA--ACGGGATGTGAACACGGG---.......................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TAG--------------------CTG----TGGCCTAA------CTAACATG............................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............TGAATTG------ATGCTTGTA--ACGGG.......................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........AATGAATTG------ATGCTTGTA--ACG.........................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TA--ACGGGATGTGAACACGGG---A......................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....CTTTTTAATGAATTG------ATGCTT.................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................T-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GG............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTTTAATGAATTG------ATGCTTGT...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................TCACGCCATT--TCT-----T-G-TGGGGA..................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.....................................ACGGGATGTGAACACGGG---AAC------T.............................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GCGGATCGCTGACCAAGTCC---C................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GGTTTGGGTA------------------T------CTCTGTGCTT.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AAGCAGCCAGCGCGGATCGCT..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................GGTA------------------T------CTCTGTGCTTCTAG--------------------CT.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................GG--------------GGTTTGGGTA------------------T------CTCTGTGC...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TA--ACGGGATGTGAACACGG...........................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATTG------ATGCTTGTA--ACGGGAT.....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................TT--TCT-----T-G-TGGGGATTCTA.............................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
....TCTTTTTAATGAATTG------ATGCT..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................CCGGC-------AAGCAGCCAGCGCGGA...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TCT-AAAATTTGACGAAGTCACGCC.........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................ATT-TCATCGACATGCAGAGGC..............................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACGGGATGTGAACACGGG---AAA------..............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TGTA--ACGGGATGTGAACACGG...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................TC--GGTTTC-------CCATT-TCATCGAC........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................GCCATT--TCT-----T-G-TGGGGATTC...............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.................TTG------ATGCTTGTA--ACGGGATGT...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
................ATTG------ATGCTTGTA--ACGGGATG....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................CATT-TCATCGACATGCAGAGG...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TCATCGACATGCAGAGGCCG............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ATT--TCT-----T-G-TGGGGATTCTATT-..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TGACCAAGTCC---CATAT---GGGCGTTT.2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........AATGAATTG------ATGCTTGTA--A...........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
..................................A--ACGGGATGTGAACACGGG---A......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGT...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................TT-TCATCGACATGCAGAGGCC.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..................................................................................................................................TATT-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CTGA.......................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
.................................TA--ACGGGATGTGAACACGGG---.......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TGTA--ACGGGATGTGAACACGGT---.......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TCTGTGCTTCTAG--------------------CTG----TGG...............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TGAACACGGG---AAC------CATAC-GGT.....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................TTGGGTA------------------T------CTCTGTGCTTCTA..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TGACCAAGTCC---CATAT---GGGCG....2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTA--ACGGGATGTGAACACGGG---A......................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TGACCAAGTCC---CATAT---GGGCGTT..2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................TAA------CTAACATGCATATTC--GGT................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TGACCAAGTCC---CATAT---GGGC.....2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ATGCTTGTA--ACGGGATGTG..................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGAATTG------ATGCTTGTA--ACGG........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CACAC-GGTTCGTCT-AAAATTTGGCCAAGTCACGCCATT--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CGCTGTGGTTCTAA--------------------CTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGTTTCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................GCTGACCAAGTCC---CATAT---.........1811.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................TT-TCATCGACATGCAGAGGCC.............................................................2111.00100000000000001000
................................................................................CT-AAAATTTGGCCAAGTCAC............................................................................................................................................................................................................................................................................................................................2011.00100000000010000000
..........................................................................................................................................................................................................................GTA------------------T------CGCTGTGGTTCTAA--------------------CT.......................................................................................................................................2011.00110000000000000000
................................GTA--ACGGGATGTGAACACGG...........................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..................................A--ACGGGATGTGAACACGGG---ATT------T.............................................................................................................................................................................................................................................................................................................................................................2311.00100000000000001000
droSec2
-AGGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CACAC-GGTTCGTCT-AAAATTTGGCAAAGTCACGCCATT--TCT-----T-G-TGGGGATTCAATG-G-----------------------------------------------------------GG--------------GGTTTGGGTA------------------T------CGCTGTGGTTCTAA--------------------CTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGTTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................ATTG------ATGCTTGTA--ACGGGATG....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................T-----T-G-TGGGGATTCAATG-G-----------------------------------------------------------GG--------------GG............................................................................................................................................................................................................2111.0010100
droYak3
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACGGG---AAC------CACAC-TGTTTGTCG-AAAATTTGGCTAAGTCACGCCATA--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTATGGGCA------------------T------C-----------------------------GTGGCTG----TGGCCAAA------CTAACATGCATATTT--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------GAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---GGGCGT---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................TA--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------..............................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................TATGGGCA------------------T------C-----------------------------GTGGCTG----TGGC..............................................................................................................................2111.00101000000000
droEre2
GATGTCTTTTTAATGAATTG------ATGCTTGTA--ACGGGATGTGAACACG---------------------GTTCGTCT-AAAATTTGGCGAAGTCACGCCATA--TCT-----T-G-TGGGGATTCTATT-G-----------------------------------------------------------GG--------------GGTATGGATA------------------T------C-----------------------------GTGGCTG----TGGCCTAA------CTAACATGCATATTC--GGTTTC-------CCATT-TCATCGACATGCAGAGGCCGGC-------AAGCAGCCAGCGCGGATCGCTGACCAAGTCC---CATAT---CGGCGTTTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:50 PM