ID:

dps_1021

 Coordinate:

3:4972869-4972931 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.2 -6.0

Flybase annnotation

exon [dpse_GLEANR_15387:1]; exon [dpse_GLEANR_15387:2]; CDS [Dpse\GA24728-cds]; CDS [Dpse\GA24728-cds]; intron [Dpse\GA24728-in]

No Repeatable elements found

mature
  1. dps_1021  3:4972870-4972893 +
  2. dps_2358  Unknown_singleton_3286:1128-1151 -
star
  1. dps_1021  3:4972900-4972925 +
  2. dps_2358  Unknown_singleton_3286:1096-1121 -
  3. dps_3369  XR_group8:7884502-7884527 +

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
GCATTGGCGGTGCCGCTGCCCGCTCAAAGCAGGCCAGACAGCAGTCCGAGGTAAGGTACACAATGGCCACGAAGTTGCCGGTAGCTAAACCCTTGTCTTGTTTATGTTTCTAGGACTCTCAGGACTATAGCTCTTTCAAAACAGTGATCTTCTATTGGATGCT
***************************************************..((.(((....((((.((...)).))))))).)).....................******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011
testis
 M040
female body
 V112
male body		 SRR902010
ovaries
 M062
head
 M022
male body		 M059
embryo
 SRR902012
CNS imaginal disc
 GSM444067
head
........................................................................................................TGTTTCTAGGACTCTCAGGACTATAGC................................ 27 0 3 126.00 378 372 2 0 4 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACAG................... 26 0 3 51.67 155 151 2 0 1 0 0 0 1 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCTT............................ 25 0 3 28.67 86 73 11 2 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACTA.................................... 25 0 3 22.00 66 64 2 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTC.............................. 26 0 3 19.67 59 51 7 1 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCT............................. 27 0 3 19.33 58 49 6 1 2 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGC................................ 24 0 3 17.33 52 49 2 0 0 1 0 0 0 0
..................................................................................................TGTTTATGTTTCTAGGACTCTCAGGAC...................................... 27 0 3 16.00 48 46 2 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGAC...................................... 23 0 3 15.67 47 44 1 0 2 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACTATAG................................. 26 0 3 15.67 47 47 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCTT............................ 28 0 3 15.33 46 28 13 2 3 0 0 0 0 0
.....................................................................................................TTATGTTTCTAGGACTCTCAGGAC...................................... 24 0 3 13.67 41 39 0 1 0 1 0 0 0 0
.......................................................................................................................................TCAAAACAGTGATCTTCTATTGGATGC. 27 0 2 12.50 25 18 1 2 0 1 1 2 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCTTT........................... 26 0 3 9.33 28 26 1 0 0 1 0 0 0 0
...................................................TAAGGTACACAATGGCCACGAAGT........................................................................................ 24 0 2 7.00 14 8 3 3 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACT..................................... 24 0 3 6.33 19 17 1 0 0 0 1 0 0 0
.................................................................................................TTGTTTATGTTTCTAGGACTCTCAGG........................................ 26 0 3 6.00 18 18 0 0 0 0 0 0 0 0
.....................................................................................................................................TTTCAAAACAGTGATCTTCTATTGGA.... 26 0 2 6.00 12 5 2 2 3 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCTTTC.......................... 27 0 3 5.67 17 16 1 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTATAGCTCTT............................ 27 0 3 5.33 16 15 0 1 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCT............................... 25 0 3 5.00 15 11 0 1 0 1 2 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACTA.................................... 23 0 3 4.33 13 10 3 0 0 0 0 0 0 0
.....................................................................................................................CTCAGGACTATAGCTCTTTCAAAACAG................... 27 0 3 4.33 13 13 0 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTATAGCTCT............................. 26 0 3 4.33 13 11 2 0 0 0 0 0 0 0
....................................................................................................................TCTCAGGACTATAGCTCTTTCAAAACAG................... 28 0 3 4.00 12 12 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAG................................. 23 0 3 3.67 11 11 0 0 0 0 0 0 0 0
..........................................................................................................TTTCTAGGACTCTCAGGACTATAGC................................ 25 0 3 3.67 11 11 0 0 0 0 0 0 0 0
...................................................TAAGGTACACAATGGCCACGAAG......................................................................................... 23 0 2 3.50 7 7 0 0 0 0 0 0 0 0
.....................................................................................................TTATGTTTCTAGGACTCTCAGGACTA.................................... 26 0 3 3.33 10 10 0 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTATAGCTC.............................. 25 0 3 3.00 9 9 0 0 0 0 0 0 0 0
........................................................................................................................................CAAAACAGTGATCTTCTATTGGATGC. 26 0 2 3.00 6 5 0 1 0 0 0 0 0 0
......................................................................................................................................TTCAAAACAGTGATCTTCTATTGGA.... 25 0 2 2.50 5 5 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCT............................. 24 0 3 2.33 7 6 1 0 0 0 0 0 0 0
....................................................................................................TTTATGTTTCTAGGACTCTCAGGAC...................................... 25 0 3 2.33 7 7 0 0 0 0 0 0 0 0
..................................................................................................TGTTTATGTTTCTAGGACTCTCAGGA....................................... 26 0 3 2.33 7 7 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCTTTCA......................... 28 0 3 2.33 7 7 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGC................................ 21 0 3 2.33 7 7 0 0 0 0 0 0 0 0
.................................................................................................TTGTTTATGTTTCTAGGACTCTCA.......................................... 24 0 3 2.33 7 7 0 0 0 0 0 0 0 0
.................................................................................................TTGTTTATGTTTCTAGGACTCTCAGGA....................................... 27 0 3 2.00 6 5 0 1 0 0 0 0 0 0
.....................................ACAGCAGTCCGAGGTAAGGTACACAA.................................................................................................... 26 0 2 2.00 4 2 0 2 0 0 0 0 0 0
............................................TCCGAGGTAAGGTACACAATGGC................................................................................................ 23 0 2 2.00 4 1 0 2 0 1 0 0 0 0
.......................................................................................................................................TCAAAACAGTGATCTTCTATTGGATG.. 26 0 2 2.00 4 2 2 0 0 0 0 0 0 0
..................................................................................................TGTTTATGTTTCTAGGACTCTCAGG........................................ 25 0 3 2.00 6 6 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTC.............................. 23 0 3 2.00 6 5 1 0 0 0 0 0 0 0
....................................................................................................................TCTCAGGACTATAGCTCTTTCAAAAC..................... 26 0 3 2.00 6 6 0 0 0 0 0 0 0 0
.................................................................................TAGCTAAACCCTTGTCTTGTTTATGT........................................................ 26 0 3 1.67 5 4 1 0 0 0 0 0 0 0
...............................................................................................................AGGACTCTCAGGACTATAGCTCTT............................ 24 0 3 1.67 5 2 3 0 0 0 0 0 0 0
.....................................................................................TAAACCCTTGTCTTGTTTATGTTTCTA................................................... 27 0 3 1.67 5 5 0 0 0 0 0 0 0 0
.................................................................................................TTGTTTATGTTTCTAGGACTCTCAGGAC...................................... 28 0 3 1.67 5 5 0 0 0 0 0 0 0 0
........................................GCAGTCCGAGGTAAGGTACACAATGGCC............................................................................................... 28 0 2 1.50 3 1 0 2 0 0 0 0 0 0
...................................................................................................................................TCTTTCAAAACAGTGATCTTCTAT........ 24 0 2 1.50 3 2 1 0 0 0 0 0 0 0
...................................................TAAGGTACACAATGGCCACGAAGTTGCCGG.................................................................................. 30 0 2 1.50 3 3 0 0 0 0 0 0 0 0
.........................AAAGCAGGCCAGACAGCAGTCCGAGG................................................................................................................ 26 0 2 1.50 3 0 2 1 0 0 0 0 0 0
.........................................................................................................................................AAAACAGTGATCTTCTATTGGATGC. 25 0 2 1.50 3 2 0 0 0 1 0 0 0 0
...................................................TAAGGTACACAATGGCCACGAAGTTG...................................................................................... 26 0 2 1.50 3 3 0 0 0 0 0 0 0 0
..............................................CGAGGTAAGGTACACAATGGCCACGAA.......................................................................................... 27 0 2 1.50 3 3 0 0 0 0 0 0 0 0
........................................GCAGTCCGAGGTAAGGTACACAATGGC................................................................................................ 27 0 2 1.50 3 3 0 0 0 0 0 0 0 0
.......................................................................................................................CAGGACTATAGCTCTTTCAAAACAG................... 25 0 3 1.33 4 4 0 0 0 0 0 0 0 0
..........................................................................................................TTTCTAGGACTCTCAGGACTATAGCTC.............................. 27 0 3 1.33 4 4 0 0 0 0 0 0 0 0
..........................................................................................................TTTCTAGGACTCTCAGGACTATAGCTCT............................. 28 0 3 1.33 4 3 0 1 0 0 0 0 0 0
.........................................................................................................GTTTCTAGGACTCTCAGGACTATAGC................................ 26 0 3 1.33 4 4 0 0 0 0 0 0 0 0
.................................................................................................................GACTCTCAGGACTATAGCTCTTTCAA........................ 26 0 3 1.33 4 4 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCTTTTCAG....................... 33 3 3 1.33 4 4 0 0 0 0 0 0 0 0
.......................................................................................................ATGTTTCTAGGACTCTCAGGACTATAG................................. 27 0 3 1.33 4 4 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACTATA.................................. 25 0 3 1.33 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TGTTCTAGGACTCTCAGGACTATAGC................................ 26 2 3 1.00 3 3 0 0 0 0 0 0 0 0
..........TGCCGCTGCCCGCTCAAAGCAGGC................................................................................................................................. 24 0 2 1.00 2 1 0 0 0 1 0 0 0 0
......................................................................................................................................TTCAAAACAGTGATCTTCTATTGGATGC. 28 0 2 1.00 2 0 1 0 0 0 1 0 0 0
...........................................................................TGCCGGTAGCTAAACCCTTGTCTTGTT............................................................. 27 0 3 1.00 3 1 2 0 0 0 0 0 0 0
....................................................AAGGTACACAATGGCCACGAAGTTGCCGG.................................................................................. 29 0 2 1.00 2 2 0 0 0 0 0 0 0 0
...................................................TAAGGTACACAATGGCCACGAAGTTGC..................................................................................... 27 0 2 1.00 2 2 0 0 0 0 0 0 0 0
............................................TCCGAGTTAAGGTACACAATGGCC............................................................................................... 24 1 2 1.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................TCGGAGGACTCTCAGGACTATAGCTC.............................. 26 3 3 1.00 3 3 0 0 0 0 0 0 0 0
..........TGCCGCTGCCCGCTCAAAGCAGGCC................................................................................................................................ 25 0 2 1.00 2 0 2 0 0 0 0 0 0 0
.............................................................................................TGTCTTGTTTATGTTTCTAGGACTC............................................. 25 0 3 1.00 3 3 0 0 0 0 0 0 0 0
..........TGCCGCTGCCCGCTCAAAGCAGG.................................................................................................................................. 23 0 2 1.00 2 0 2 0 0 0 0 0 0 0
.................................................................................TAGCTAAACCCTTGTCTTGTTTATGTT....................................................... 27 0 3 1.00 3 3 0 0 0 0 0 0 0 0
.............................................................................................................................TATAGCTCTTTCAAAACAGTGATCTTC........... 27 0 2 1.00 2 1 0 1 0 0 0 0 0 0
.............................................................................................................................TATAGCTCTTTCAAAACAGTGATC.............. 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................TCAAAACAGTGATCTTCTATTGGATGCT 28 0 2 1.00 2 0 0 2 0 0 0 0 0 0
...............................................................TGGCCACGAAGTTGCCGGTAGCTAAAC......................................................................... 27 0 2 1.00 2 0 2 0 0 0 0 0 0 0
.............................................................................................................................TATAGCTCTTTCAAAACAGTGATCT............. 25 0 2 1.00 2 0 1 1 0 0 0 0 0 0
...................................AGACAGCAGTCCGAGGTAAGGTACA....................................................................................................... 25 0 2 1.00 2 0 0 2 0 0 0 0 0 0
...............................................GAGGTAAGGTACACAATGGCCACGAAG......................................................................................... 27 0 2 1.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................CTTCTAGGACTCTCAGGACTATAGC................................ 25 1 3 1.00 3 3 0 0 0 0 0 0 0 0
.....................................................................................................TTATGTTTCTAGGACTCTCAGGACC..................................... 25 1 3 1.00 3 3 0 0 0 0 0 0 0 0
.....AACAGTGCCGCTGCCCGCTCAAAGCAGG.................................................................................................................................. 28 3 2 1.00 2 2 0 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACTATAGC................................ 29 0 3 1.00 3 3 0 0 0 0 0 0 0 0
..........................................................................TTGCCGGTAGCTAAACCCTTGTCT................................................................. 24 0 3 1.00 3 1 0 2 0 0 0 0 0 0
.......................................................................................................................CAGGACTATAGCTCTTTCAAAACAGTGA................ 28 0 2 1.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................AAACAGTGATCTTCTATTGGATGC. 24 0 2 1.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................TCCGAGGACTCTCAGGACTATAGCTC.............................. 26 2 3 1.00 3 3 0 0 0 0 0 0 0 0
...................................................TAAGGTACACAATGGCCACGAAGTT....................................................................................... 25 0 2 1.00 2 1 1 0 0 0 0 0 0 0
...................................................................................................................CTCTCAGGACTATAGCTCTTTCAAAACAG................... 29 0 3 0.67 2 2 0 0 0 0 0 0 0 0
.................................................................................................TTGTTTATGTTTCTAGGACTCTCAG......................................... 25 0 3 0.67 2 2 0 0 0 0 0 0 0 0
..........................................................................TTGCCGGTAGCTAAACCCTTGTCTTG............................................................... 26 0 3 0.67 2 1 1 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACTATA.................................. 27 0 3 0.67 2 2 0 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTATAG................................. 22 0 3 0.67 2 2 0 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTATAGCTCTC............................ 27 1 3 0.67 2 2 0 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGA....................................... 22 0 3 0.67 2 2 0 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTATAGC................................ 23 0 3 0.67 2 2 0 0 0 0 0 0 0 0
....................................................................................................TTTATGTTTCTAGGACTCTCAGGA....................................... 24 0 3 0.67 2 2 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTAT................................... 18 0 3 0.67 2 2 0 0 0 0 0 0 0 0
.................................................................................................CTGTTTATGTTTCTAGGACTCTCAGGAC...................................... 28 1 3 0.67 2 2 0 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAG......................................... 20 0 3 0.67 2 2 0 0 0 0 0 0 0 0
...........................................................................TGCCGGTAGCTAAACCCTTGTCT................................................................. 23 0 3 0.67 2 0 0 1 1 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCTTA........................... 26 1 3 0.67 2 2 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACTATAA................................. 26 1 3 0.67 2 2 0 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGG........................................ 21 0 3 0.67 2 1 0 0 0 1 0 0 0 0
...................................................................................................................CTCTCAGGACTATAGCTCTTTCAAA....................... 25 0 3 0.67 2 2 0 0 0 0 0 0 0 0
............................................................................................TTGTCTTGTTTATGTTTCTAGGA................................................ 23 0 3 0.67 2 2 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACTATAGCA............................... 28 1 3 0.67 2 2 0 0 0 0 0 0 0 0
.....................................................................................................TTATGTTTCTAGGACTCTCAGGACT..................................... 25 0 3 0.67 2 2 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGTG................. 28 0 3 0.67 2 1 1 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTTTCAGGACTATAGC................................ 27 1 3 0.67 2 2 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGAC...................................... 21 0 3 0.67 2 2 0 0 0 0 0 0 0 0
..........................................................................................................TTTCTAGGACTCTCAGGACTATAGCTCTT............................ 29 0 3 0.67 2 2 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCTAAT.......................... 30 3 3 0.67 2 2 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCAA............................ 28 2 3 0.67 2 2 0 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACCC.................................... 25 2 3 0.67 2 2 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACT..................................... 22 0 3 0.67 2 1 1 0 0 0 0 0 0 0
...........................................................................................................TCGGAGGACTCTCAGGACTATAGCTCTT............................ 28 3 3 0.67 2 2 0 0 0 0 0 0 0 0
...........................................................................TGCCGGTAGCTAAACCCTTGTCTT................................................................ 24 0 3 0.67 2 0 1 1 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAAC..................... 24 0 3 0.67 2 2 0 0 0 0 0 0 0 0
.............................................................................CCGGTAGCTAAACCCTTGTCTTGTT............................................................. 25 0 3 0.67 2 2 0 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACA..................................... 24 1 3 0.67 2 2 0 0 0 0 0 0 0 0
................................................................................................CTTGTTTATGTTTCTAGGACTCTGT.......................................... 25 2 3 0.67 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................TGATCTTCTATTGGATGCT 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TCAAAACAGTGATCTTCTAT........ 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................TATAGCTCTTTCAAAACAGTGAT............... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.........................................CAGTCCGAGGTAAGGTACACAATGGC................................................................................................ 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.......................TCAAAGCAGGCCAGACAGCAGTCCGAG................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................TGCCCGCTCAAAGCAGGCCAGACAGCAGT...................................................................................................................... 29 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................TCAAAACAGTGATCTTCTATTGGATGG. 27 1 2 0.50 1 0 0 0 0 0 1 0 0 0
.............................................CCGAGGTAAGGTACACAATGGCCAC............................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................AAACAGTGATCTTCTATTGGATGCC 25 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................CAGACAGCAGTCCGAGGTAAGG........................................................................................................... 22 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................CAGGCCAGACAGCAGTCCGAGGTAAGG........................................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
............................................TCCGAGGTAAGGTACACAATGGCCAC............................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................CAGCAGTCCGAGGTAAGGTACACAATG.................................................................................................. 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................AAACAGTGATCTTCTATTGG..... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...................................AGACAGCAGTCCGAGGTAAGGTAC........................................................................................................ 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
....................................................AAGGTACACAATGGCCACGAAGTTGC..................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................ACAGCAGTCCGAGGTAAGGTACA....................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..............................................CGAGGTAAGGCACACAATGGC................................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..........TGCCGCTGCCCGCTCAAAGCAGGCCA............................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0
....................CGCTCAAAGCAGGCCAGACAGCAGTC..................................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................CCGAGGTAAGGTACACAATGGCCA.............................................................................................. 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0
............................GCAGGCCAGACAGCAGTCCGAGG................................................................................................................ 23 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...................................AGACAGCAGTCCGAGGTAAGG........................................................................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...................................................TAAGGTACACAATGGCCACGAAGTCCC..................................................................................... 27 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..........TGCCGCTGCCCGCTCAAAGCAGGCCAG.............................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................TGGCCACGAAGTTGCCGGTAGCTAAA.......................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
................................GCCAGACAGCAGTCCGAGGTAAGGTA......................................................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.................GCCCGCTCAAAGCAGGCCAGACAGC......................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...................................................................CACGAAGTTGCCGGTAGCTAAACCCTTG.................................................................... 28 0 2 0.50 1 0 0 1 0 0 0 0 0 0
......................................CAGCAGTCCGAGGTAAGGTACACA..................................................................................................... 24 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..............................................................ATGGCCACGAAGTTGCCGGTA................................................................................ 21 0 2 0.50 1 0 1 0 0 0 0 0 0 0
............................................TCCGAGGTAAGGTACACAATGGCCA.............................................................................................. 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..................CCCGCTCAAAGCAGGCCAGACAGCAG....................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................ATCAAAGCAGGCCAGACAGCAGTCCG................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................ACAGTGATCTTCTATTGGAT... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................TGGCCACGAAGTTGCCGGTAGCTA............................................................................ 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................TCAAAACAGTGATCTTCTATTGGA.... 24 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..................CCCGCTCAAAGCAGGCCAGACAGAAG....................................................................................................................... 26 1 2 0.50 1 1 0 0 0 0 0 0 0 0
....................CGCTCAAAGCAGGCCAGACAGCAG....................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........TGCCGCTGCCCGCTCAAAGCAGGCCT............................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0 0 0 0 0
................TGCCCGCTCAAAGCAGGCCAGACAG.......................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................GCAGGCCAGACAGCAGTCCGAGGTA.............................................................................................................. 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0
..................................CAGACAGCAGTCCGAGGTAAGGTAC........................................................................................................ 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...................................................................CACGAAGTTGCCGGTAGCTAAACCCT...................................................................... 26 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................AAACAGTGATCTTCTATTGGATGCT 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................CAGGCCAGACAGCAGTCCGAGGT............................................................................................................... 23 0 2 0.50 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................TAGCTCTTTCAAAACAGTGATCTTCTAT........ 28 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...................................AGACAGCAGTCCGAGGTAAGGTA......................................................................................................... 23 0 2 0.50 1 0 0 1 0 0 0 0 0 0
....................................................................ACGAAGTTGCCGGTGGCTAAACCCTTGTC.................................................................. 29 1 2 0.50 1 0 0 1 0 0 0 0 0 0
........................................................TACACAATGGCCACGAAGTTGCCGGT................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................CGCTCAAAGCAGGCCAGACAGCAGT...................................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
................TGCCCGCTCAAAGCAGGCCAGACAGC......................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................CGAGGTAAGGTACACAATGGC................................................................................................ 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................TTCAAAACAGTGATCTTCTATTGGATG.. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................CAGCAGTCCGAGGTAAGGTACACAA.................................................................................................... 25 0 2 0.50 1 0 0 1 0 0 0 0 0 0
.............................................................AATGGCCACGAAGTTGCCGGTAG............................................................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................TATAGCTCTTTCAAAACAGTGATCTT............ 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................TTCAAAACAGTGATCTTCTATTGGAT... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................GCAGGCCAGACAGCAGTCCGA.................................................................................................................. 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................TAGCTCTTTCAAAACAGTGATCTTC........... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................TAGCTCTTTCAAAACAGTGATCTTCT.......... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTATAGCTCTTTCAG........................ 31 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.................................................................................TAGCTAAACCCTTGTCTTGT.............................................................. 20 0 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTTTCAGGAC...................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................TGCCGGTAGCTAAACCCTTGTCTTGTCC............................................................ 28 2 3 0.33 1 0 0 1 0 0 0 0 0 0
...........................................................................................................TCCGAGGACTCTCAGGACTATAGCTCTT............................ 28 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................................CTAGGACTCTCAGGACTATAGCTCTT............................ 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................TTTATGTTTCTAGGACTCTCAGT........................................ 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACTAT................................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................................TTAGGACTCTCAGGACTATAG................................. 21 1 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................TTGCCGGTAGCTAAACCCTTGTCTTGTCC............................................................ 29 2 3 0.33 1 0 0 1 0 0 0 0 0 0
.............................................................................................................TTTTGACTCTCAGGACTATAGCTCTTT........................... 27 3 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................TGCCGGTAGCTAAACCCTTGTCTTGT.............................................................. 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCCCAGGACTA.................................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...............................................................................................................AGGACTCTCAGGACTATAGCTCTTTCA......................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................................................................GTACTCTCAGGACTATAGCTC.............................. 21 1 3 0.33 1 0 0 0 0 0 0 1 0 0
.........................................................................................................GTTTCTAGGACTCTCAGGACTATA.................................. 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGGCTATAGC................................ 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGCCTCTCAGGACTATAGC................................ 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGTCTATAGCTCT............................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................TTGCCGGTAGCTAAACCCTTGTCTTGT.............................................................. 27 0 3 0.33 1 0 1 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACAC................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................CATGTTTCTAGGACTCTCAGGACTATAGC................................ 29 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCTAA........................... 29 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................CAGGACTATAGCTCTTTCAAAACAGTG................. 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................................................................ACTCTCAGGACTATAGCTCTTTCAAA....................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCTA............................ 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TTTCTAGGACTCTCAGGACTATAGATCT............................. 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...................................................................................................GTTTATGTTTCTAGGACTCTCAGGAC...................................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTAT............................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGATTCTCAGGACTATAGCTCTT............................ 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACTATAGCTC.............................. 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................................TCTCAGGACTATAGCTCTTTCAACAG..................... 26 2 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACC.................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................ATATGTTTCTAGGACTCTCAGGAC...................................... 24 1 3 0.33 1 0 1 0 0 0 0 0 0 0
.......................................................................................................ATGTTTCTAGGACTCTCAGGACTATAGC................................ 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTTTTTCAAAACAG................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0
............................GCAGGCCAGACAGCAGTCCGAGGAC.............................................................................................................. 25 2 3 0.33 1 0 0 0 0 1 0 0 0 0
......................................................................................................TATGTTTCTAGGACTCTCAGGACTAAA.................................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGGGTA............... 30 3 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGT.................. 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCTTA........................... 29 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGA.................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................................................ATGTTTCTAGGACTCTCAGGACTA.................................... 24 0 3 0.33 1 0 1 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCTCTTTCC......................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.................................................................................TAGCTAAACCCTTGTCTTGA.............................................................. 20 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGAT................. 28 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................CTCAGGACTATAGCTCTTTCAAAACA.................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAAGACTCTCAGGACTATAGC................................ 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATA.................................. 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................CAAAGCAGGCCAGACAGCAGT...................................................................................................................... 21 0 3 0.33 1 0 0 1 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCCC........................ 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................CCGAGGACTCTCAGGACTATAGCTC.............................. 25 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................................................TGTTTATGTTTCTAGGACTCTCAGGACC..................................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCC............................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................TGCCGGTAGCTAAACCCTTGTCTAA............................................................... 25 2 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................TATGGTTCTAGGACTCTCAGGAC...................................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................TAAACCCTTGTCTCGTTTATGTTTCTA................................................... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................AAACCCTTGTCTTGTTTATGTTTCT.................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TTATGTTTCCAGGACTCTCAGGACTA.................................... 26 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................TAAACCCTTGTCTTGTTTATGTCC...................................................... 24 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TTATGTTTCTAGGACTCTCAGGACTAA................................... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................ATATTGTTTATGTTTCTAGGACTCTCAGGACAA.................................... 33 3 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................TTGTCTTGTTTATGTTTCTAGGACTC............................................. 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TTCTAGGACTCTCAGGACTATAGCTCA............................. 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGAA............................... 22 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATAGCCC.............................. 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
GCATTGCCGGTGCCGCTGCCC.............................................................................................................................................. 21 1 3 0.33 1 0 1 0 0 0 0 0 0 0
.....................................................................................................TTATGTTTCTAGGACTCTCAGG........................................ 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
.........................................................................................................GTTTCTAGGACTCTCAGGACTATAG................................. 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................CTATAGCTCTTTCAAAACAG................... 20 0 3 0.33 1 1 0 0 0 0 0 0 0 0
................................................................................................................GGACTCTCAGGACTATAGCTC.............................. 21 0 3 0.33 1 0 1 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGCACTCTCAGGACTATAGC................................ 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TTATGTTTCTAGGACTCTCAGGACA..................................... 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................TGTCTTGTTTATGTTTCTAGGACTCT............................................ 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................TTGCCGGTAGCTAAACCCTTGTCTT................................................................ 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................TTTCTAGGACTCTCAGGACTATAG................................. 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................TGCCGGTAGCTAAACCCTTGTCC................................................................. 23 1 3 0.33 1 0 0 1 0 0 0 0 0 0
............................................................................................................CGGAGGACTCTCAGGACTATAGCT............................... 24 3 3 0.33 1 0 0 0 0 0 0 0 1 0
...........................................................................TGCCGGTAGCTAAACCCTTGTC.................................................................. 22 0 3 0.33 1 0 0 0 0 0 0 0 0 1
..........................................................................TTGCCGGTAGCTAAACCCTTGT................................................................... 22 0 3 0.33 1 0 0 1 0 0 0 0 0 0
.......................TCAAAGCAGGCCAGACAGCAG....................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTTCAAAT...................... 23 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.............................................................................................................CTAGGACTCTCAGGACTATAGCTCT............................. 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0
......................CTCAAAGCAGGCCAGACAGCA........................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0
......................CTCAAAGCAGGCCAGACAGCAG....................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0
........................................................................................................TGTTTCTAGGACTCTCAGGACTAT................................... 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...........................................................................................................TCCGAGGACTCTCAGGACTATAGC................................ 24 2 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................TCTAGGACTCTCAGGACTCTAGCTCTT............................ 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................TAAACCCTTGTCTTGTTTATGTTTC..................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................GCCGGTAGCTAAACCCTTG.................................................................... 19 0 3 0.33 1 0 1 0 0 0 0 0 0 0
..................................................................................................TGTTTATGTTTCTAGGACTCTCAGGACA..................................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0
..............................................................................................................TAGGACTCTCAGGACTATC.................................. 19 1 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................................................................................................TCAGGACTATAGCTCTTCC.......................... 19 1 4 0.25 1 1 0 0 0 0 0 0 0 0
................................................................................................CTTGTTTATGTTCCTTGGA................................................ 19 2 10 0.10 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CGTAACCGCCACGGCGACGGGCGAGTTTCGTCCGGTCTGTCGTCAGGCTCCATTCCATGTGTTACCGGTGCTTCAACGGCCATCGATTTGGGAACAGAACAAATACAAAGATCCTGAGAGTCCTGATATCGAGAAAGTTTTGTCACTAGAAGATAACCTACGA
********************************************************..((.(((....((((.((...)).))))))).)).....................*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 M062
head
...........CGGCGACGGGCGAGTTTCGT.................................................................................................................................... 20 0 2 1.50 3 0 3 0 0 0
......................................GTCGTCAGGCTCCATTCCATGTG...................................................................................................... 23 0 2 1.50 3 2 1 0 0 0
..........................................................................................................................................TTTGTCACTAGAAGATAACCTACG. 24 0 2 1.50 3 2 0 1 0 0
..........................................................................................................................................TTTGTCACTAGAAGATAACCTAC.. 23 0 2 1.00 2 2 0 0 0 0
..........ACGGCGACGGGCGAGTTTCGT.................................................................................................................................... 21 0 2 1.00 2 0 0 0 2 0
.........................................................................................GGGAACAGAACAAATACAAAGATCC................................................. 25 0 3 1.00 3 1 2 0 0 0
........................................CGTCAGGCTCCATTCCATGTG...................................................................................................... 21 0 2 1.00 2 0 2 0 0 0
.......GCCACGGCGACGGGCGAGTTTCGT.................................................................................................................................... 24 0 2 1.00 2 0 1 1 0 0
................................................................................................GAACAAATACAAAGATCCTGAGAG........................................... 24 0 3 0.67 2 1 1 0 0 0
........................................................................................TGGGAACAGAACAAATACAAAGAT................................................... 24 0 3 0.67 2 0 1 0 1 0
......................................GTCGTCAGGCTCCATTCCAT......................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................AGAAAGTTTTGTCACTAGAAGATAAC...... 26 0 2 0.50 1 0 1 0 0 0
..................................................................GGTGCTTCAACGGCCATCGATTT.......................................................................... 23 0 2 0.50 1 0 1 0 0 0
..........................................................GTGTTACCGGTGCTTCAACGGCCAT................................................................................ 25 0 2 0.50 1 1 0 0 0 0
............................................................GTTACCGGTGCTTCAACGGCCATCGATT........................................................................... 28 0 2 0.50 1 1 0 0 0 0
..................................................................GGTGCTTCAACGGCCATCGAT............................................................................ 21 0 2 0.50 1 0 0 1 0 0
.....................................TGTCGTCAGGCTCCATTCCATGT....................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
................................CGGTCTGTCGTCAGGCTCCATT............................................................................................................. 22 0 2 0.50 1 0 0 1 0 0
...........................................................................................................................................TTGTCACTAGAAGATAACCTACG. 23 0 2 0.50 1 1 0 0 0 0
.............................GTCCGGTCTGTCGTCAGGCTC................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
..............................TCCGGTCTGTCGTCAGGCTCCAT.............................................................................................................. 23 0 2 0.50 1 1 0 0 0 0
....................................................................TGCTTCAACGGCCATCGATTTGG........................................................................ 23 0 2 0.50 1 0 1 0 0 0
..............................................................................................CAGAACAAATACAAAGATCCTGAGAG........................................... 26 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................CCTGATATCGAGAAAGTTTTG..................... 21 0 3 0.33 1 1 0 0 0 0
..................................................................................................................AAAGAGTCCTGATATCGAGAAAGTTTTGT.................... 29 2 3 0.33 1 0 0 1 0 0
................................................................................CATCGATTTGGGAACAGAACAAA............................................................ 23 0 3 0.33 1 1 0 0 0 0
................................................................................................................CCTGAGAGTCCTGATATCGAGAAAG.......................... 25 0 3 0.33 1 1 0 0 0 0
.......................................................................................TTGGGAACAGAACAAATACAAAGATG.................................................. 26 1 3 0.33 1 1 0 0 0 0
.............................................................................................ACAGAACAAATACAAAGATCCTGAGAG........................................... 27 0 3 0.33 1 1 0 0 0 0
...............................................................................................AGAACAAATACAAAGATCCTGAG............................................. 23 0 3 0.33 1 1 0 0 0 0
................................................................................CATCGATTTGGGAACAGAACA.............................................................. 21 0 3 0.33 1 0 0 1 0 0
.............................................................................GGCCATCGATTTGGGAACAGA................................................................. 21 0 3 0.33 1 1 0 0 0 0
.......................................................................................TTGGGAACAGAACAAATACAAAGAT................................................... 25 0 3 0.33 1 1 0 0 0 0
..........................................................................................GGAACAGCACAAATACAAAGAT................................................... 22 1 3 0.33 1 0 0 0 0 1
.......................................................................................ATGGGAACAGAACAAATACAAAGAT................................................... 25 1 3 0.33 1 1 0 0 0 0
................................................................................................................CCTGAGAGTCCTGATATCGAGAA............................ 23 0 3 0.33 1 0 0 1 0 0
..................................................................................................ACAAATACAAAGATCCTGAGAGTCCTGAT.................................... 29 0 3 0.33 1 0 0 1 0 0
............................................................................................AACAGAACAAAAACAAAGATCATT............................................... 24 3 9 0.11 1 0 0 0 1 0
..................................................................................TCGATTTCGAAACAGAAGAAA............................................................ 21 3 13 0.08 1 1 0 0 0 0
.......GGCACGGCGAAGGGCGCGT......................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:4972819-4972981 + dps_1021 GCA---TTGGCGG------TGCCGCTGCCCGCTCAA----AGCAGGCCAGACAGCAGTCCGAGGTAAGGTAC------ACA---ATG-------G-CCA--CGAAGTTGCCGG-T--AGC-TAAACCCTT-GTCTTG-TTTATG---------------------------TTTC---TAGGACTCTCAGGACTATAGCTCTTTCAAAACAGTGATCTTCTATTGGATGCT
droPer2 scaffold_40:74112-74274 + GCA---TTGGCGG------TGCCGCTGCCCCCTCAA----AGCAGGCCAGACAGCAGTCCGAGGTAAGGTAC------ACA---ATG-------G-CCA--CGGAGTTGCCGG-T--AGC-TAAACCCTT-GTCATG-TTTATG---------------------------TTTC---TAGGACTCTCAGGACTATAGCTCTTTCAAAACAGTGCTCTTCTATTGCATGCT
droWil2 scf2_1100000004830:481453-481620 - GCA---GTGGAGTCAATGGCAATGGCGGCAGCTCAA----AGTTGGCCAAACAGCGCTCTCAAGTAAGCGAA------TGAATCGAG-------G-TCTCACTGCACAACCGGCT--ATT-TATGACT--------T-TTCACA---------------------------TTTA---CAGGACTCCCAGGACTACAGTTCTTTCAAAACGGTTTTATTTTATTGTCTACT
droVir3 scaffold_13049:18867252-18867410 - GAA---ATGACGG------T-A---------GCCAAAGTAAACTATCCAAACAGCGTGCACATGTATGTAAA-----CACG-A-ATA-------T-TCC---CATATTGCCGGTAGTATT-TAATCGCATTACCTA----CGAA---------------------------TTTA---TAGGACTCGCAGGACTACAGCGCCTTCAAGGTTGTCCTCTTCTACTGCTCCCT
droMoj3 scaffold_6680:12356771-12356935 + GAG---GTGCAAG------TGATGCCAACCAACAGA----AACTAGCCAAACAGCGTTCACATGTATGTAAA-----CACA---ATG-------A-CCC---CGTTTTGCCGGTT--ATT-TATTTGCTT-GACATG-TAATCA--------------------------TTTTG---TAGGACTCTCAGGACTACAGCGCCTTTAAGGTGGTCCTCTTCTACTGCTCTCT
droGri2 scaffold_15110:19832675-19832856 - GTG---GAGGAGA------CGC---TG----GCCACAACAAACTCTCCAAACAGCAATCGGACGTAAGTGAAATGTAAACA---ATT---ACTGG-CCC---CATTTTGCCGGCT--GTA-T----------------TTTC-TTTACAAAATGTAATGCGTCCACAATTTCTTG---AAGGACTCAAAGGACTACAGTGCCTTAAAGGTGGTCCTCTTCTACTGCTCGCT
droAna3 scaffold_13337:10834387-10834537 + CCGGAAACGGAGC------AGC---------ACAGA----AACAGACCCGCCAGCAGTCACACGTAAA---C------ATT---ACC-------A-GGT---C-ATTTGCCGGCT--GTC-TAATCCCATAGTTTAC-TTTC------------------------------TTA---CAGGACTCGCAGGATTACAGCTCCTTCAAAATAGTCCTTTTCTACTGCATGCT
droBip1 scf7180000396569:544381-544530 - CCGGAAACGGAGC------AGC---------GCAGA----AACAGACCCGCCAGCAGTCACACGTAA---AC------ATT---GGC-------A-GCT---C-ATTTGCCGGCT--CCC-TAATCCCATAGTTTAC-T----A---------------------------TTTA---CAGGACTCGCAGGACTACAGCTCTTTCAAAACAGTGCTGTTCTACTGCATGCT
droKik1 scf7180000302441:3194210-3194372 + GCA---ACGGAGG------CAATGGAGGCGCCACAA----AACAAACCCGCCAGCAGTCACAGGTAA----C--ATCCCGA---ATC-------G-CCC---CCATTTGCCGGCT--GGCCTAATCCCTT-GTTTAT-TTTC-T---------------------------TCAC---CAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGTATGCT
droFic1 scf7180000454113:1854907-1855060 - GCA---ACGGAGG------AGC---------GCCAA----AACAAACCCGCCAGCAGTCTCATGTAAGTAAC------AAT---ATA-------A-TTT---C-ACTTGCCGGCT--GGCTAATTCCCTT-GTTTAT-TTTGGA---------------------------TGCA---CAGGATTCGCAGGATTACAGCTCCTTCAAGACAGTGCTATTCTACTGCATGCT
droEle1 scf7180000491193:4807199-4807359 + GCA---ACGGAGG------AGG---------GCTGA----AACAAGGCCGCCAGCAATCGCACGTAAGTAAC------TACAT-ACATACATG-G-GTG---C-CAATGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TACC---CAGGACTTGCAGGACTACAGCTCGTTCAAGACGGTCCTGTACTATTGCATGCT
droRho1 scf7180000777448:16596-16748 + GCA---ACGGGGG------TGC---------GCCGA----AGCAAACCCGCCAGCAATCCCACGTAAGTAAA------ATC---ATT-------A-GTT---C-AAATGCCGGCT--AGC-TAATCCTTT-GTTTAT-TTTGGA---------------------------TGCC---AAGGACTCGCAGGACTATAGCTCTTTCAAGACAGTCCTATTCTACTGCATGCT
droBia1 scf7180000302193:5589324-5589476 - GCA---ACGGAGG------CGC---------AGCGA----AACAAACCCTGCAGCAGTCGCATGTGAGTAGC------ACG---ATA-------A-CTC---C-ACTTGCCGGCG--GGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TTTC---TAGGACTCGCAGGACTACAGCTCCTTCAAGATAGTGCTCTTCTACTGCATGCT
droTak1 scf7180000415254:193176-193329 - GCA---ACGGAGG------TGC---------ATCGA----AACAAAGCCTACAGCAGTCGCATGTGAGTAAC------ATG---AAA-------A-CCC---C-ATTTGCCGGCT--GGCCTAATCCCTT-GTTTAT-TTTGGA---------------------------TTCG---AAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCT
droEug1 scf7180000409711:5515118-5515273 - GTG---ATGGAGG------AGC---------ATCAA----AACAAACCCGCCAACAGTCCCATGTAAGTAAA------GTA---ATA-------A-CTT---AACTTTGCCGGCT--TAC-TAATCCCTT-GTTTAT-TTTTG----------------------------TCACACGAAGGATTCGCAGGACTACAGTTCATTCAAGACAGTACTCTTTTACTGCATGCT
dm3 chr3L:20467029-20467181 + GCA---ACGGAGT------TGC---------GCCGA----AACAAACCCGCCAGCAGTCGCACGTATGTAAC------ATG---ACG-------G-CTC---C-GATTGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TGCC---CAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCT
droSim2 3l:20036485-20036637 + GCA---ACGGAGG------AGC---------GCCGA----AACAAACGCGCCAGCAGTCGCACGTATGTAAC------ATG---AGG-------G-CTC---C-AATTGCCGGCT--AGC-TAACCCCTT-GTTTAT-TTTGGA---------------------------TGGC---CAGGACTCGCAGGACTATAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCT
droSec2 scaffold_11:362072-362225 + GCA---ACGGAGG------TGC---------GCCTA----AACAAACCCGCCAGCAGTCGCACGTATGTAAC------ATG---AGG-------G-CTC---C-AATTGCCGGCT--AGC-TAATCCCTT-GTTTATTTTTGGA---------------------------TGCC---CAGGACTCGCAGGACTATAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCT
droYak3 3L:20086810-20086963 - GCA---ATGGAGG------GGC---------GCCGA----AACAAACCCGCCAGCAGTCGCACGTATGTAAC------ATG---ATG-------GGCTC---C-AATTGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TATC---AAGGACTCGCAAGACTACAGCTCCTTCAAAACAGTGCTCTTTTACTGCATGCT
droEre2 scaffold_4784:20168292-20168444 + GCA---ATGGAGG------GGC---------GCCGA----AACAAACACGCCAGCAGTCGCACGTATGTAAA------ATG---ATG-------G-CTC---C-GATTGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGG---------------------------TGAC---AAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GCA---TTGGCGG------TGCCGCTGCCCGCTCAA----AGCAGGCCAGACAGCAGTCCGAGGTAAGGTAC------ACA---ATG-------G-CCA--CGAAGTTGCCGG-T--AGC-TAAACCCTT-GTCTTG-TTTATG---------------------------TTTC---TAGGACTCTCAGGACTATAGCTCTTTCAAAACAGTGATCTTCTATTGGATGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTATAGC................................273126.00378020000043720
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAACAG...................26351.67155020000011511
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCTT............................25328.6786011000020730
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGACTA....................................25322.006602000000640
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTC..............................26319.675907000010510
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCT.............................27319.335806000012490
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGC................................24317.335202010000490
.......................................................................................................................................TG-TTTATG---------------------------TTTC---TAGGACTCTCAGGAC......................................27316.004802000000460
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGAC......................................23315.674701000002440
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTATAG.................................26315.674700000000470
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCTT............................28315.3346013000023280
...........................................................................................................................................TTATG---------------------------TTTC---TAGGACTCTCAGGAC......................................24313.674100010010390
...........................................................................................................................................................................................................TCAAAACAGTGATCTTCTATTGGATGC.27212.502511210020180
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCTTT...........................2639.332801010000260
................................................................TAAGGTAC------ACA---ATG-------G-CCA--CGAAGT............................................................................................................................2427.00140300003080
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGACT.....................................2436.331911000000170
......................................................................................................................................TTG-TTTATG---------------------------TTTC---TAGGACTCTCAGG........................................2636.001800000000180
.........................................................................................................................................................................................................TTTCAAAACAGTGATCTTCTATTGGA....2626.00120200002350
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCTTTC..........................2735.671701000000160
.............................................................................................................................................................................TC---TAGGACTCTCAGGACTATAGCTCTT............................2735.331600000010150
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCT...............................2535.001520010010110
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTA....................................2334.331303000000100
.........................................................................................................................................................................................CTCAGGACTATAGCTCTTTCAAAACAG...................2734.331300000000130
.............................................................................................................................................................................TC---TAGGACTCTCAGGACTATAGCTCT.............................2634.331302000000110
........................................................................................................................................................................................TCTCAGGACTATAGCTCTTTCAAAACAG...................2834.001200000000120
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAG.................................2333.671100000000110
...........................................................................................................................................................................TTTC---TAGGACTCTCAGGACTATAGC................................2533.671100000000110
................................................................TAAGGTAC------ACA---ATG-------G-CCA--CGAAG.............................................................................................................................2323.5070000000070
...........................................................................................................................................TTATG---------------------------TTTC---TAGGACTCTCAGGACTA....................................2633.331000000000100
.............................................................................................................................................................................TC---TAGGACTCTCAGGACTATAGCTC..............................2533.0090000000090
............................................................................................................................................................................................................CAAAACAGTGATCTTCTATTGGATGC.2623.0060000001050
..........................................................................................................................................................................................................TTCAAAACAGTGATCTTCTATTGGA....2522.5050000000050
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCT.............................2432.3370100000060
..........................................................................................................................................TTTATG---------------------------TTTC---TAGGACTCTCAGGAC......................................2532.3370000000070
.......................................................................................................................................TG-TTTATG---------------------------TTTC---TAGGACTCTCAGGA.......................................2632.3370000000070
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCTTTCA.........................2832.3370000000070
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGC................................2132.3370000000070
......................................................................................................................................TTG-TTTATG---------------------------TTTC---TAGGACTCTCA..........................................2432.3370000000070
......................................................................................................................................TTG-TTTATG---------------------------TTTC---TAGGACTCTCAGGA.......................................2732.0060000001050
..................................................ACAGCAGTCCGAGGTAAGGTAC------ACA---A..................................................................................................................................................2622.0040000002020
.........................................................TCCGAGGTAAGGTAC------ACA---ATG-------G-C......................................................................................................................................2322.0040001002010
...........................................................................................................................................................................................................TCAAAACAGTGATCTTCTATTGGATG..2622.0040200000020
.......................................................................................................................................TG-TTTATG---------------------------TTTC---TAGGACTCTCAGG........................................2532.0060000000060
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTC..............................2332.0060100000050
........................................................................................................................................................................................TCTCAGGACTATAGCTCTTTCAAAAC.....................2632.0060000000060
..................................................................................................................T--AGC-TAAACCCTT-GTCTTG-TTTATG---------------------------T...........................................................2631.6750100000040
...................................................................................................................................................................................AGGACTCTCAGGACTATAGCTCTT............................2431.6750300000020
.........................................................................................................................TAAACCCTT-GTCTTG-TTTATG---------------------------TTTC---TA...................................................2731.6750000000050
......................................................................................................................................TTG-TTTATG---------------------------TTTC---TAGGACTCTCAGGAC......................................2831.6750000000050
.....................................................GCAGTCCGAGGTAAGGTAC------ACA---ATG-------G-CC.....................................................................................................................................2821.5030000002010
.......................................................................................................................................................................................................TCTTTCAAAACAGTGATCTTCTAT........2421.5030100000020
................................................................TAAGGTAC------ACA---ATG-------G-CCA--CGAAGTTGCCGG-.....................................................................................................................3021.5030000000030
..................................AA----AGCAGGCCAGACAGCAGTCCGAGG.......................................................................................................................................................................2621.5030200001000
.............................................................................................................................................................................................................AAAACAGTGATCTTCTATTGGATGC.2521.5030001000020
................................................................TAAGGTAC------ACA---ATG-------G-CCA--CGAAGTTG..........................................................................................................................2621.5030000000030
...........................................................CGAGGTAAGGTAC------ACA---ATG-------G-CCA--CGAA..............................................................................................................................2721.5030000000030
.....................................................GCAGTCCGAGGTAAGGTAC------ACA---ATG-------G-C......................................................................................................................................2721.5030000000030
...........................................................................................................................................................................................CAGGACTATAGCTCTTTCAAAACAG...................2531.3340000000040
...........................................................................................................................................................................TTTC---TAGGACTCTCAGGACTATAGCTC..............................2731.3340000000040
...........................................................................................................................................................................TTTC---TAGGACTCTCAGGACTATAGCTCT.............................2831.3340000001030
...............................................................................................................................................G---------------------------TTTC---TAGGACTCTCAGGACTATAGC................................2631.3340000000040
.....................................................................................................................................................................................GACTCTCAGGACTATAGCTCTTTCAA........................2631.3340000000040
.............................................................................................................................................ATG---------------------------TTTC---TAGGACTCTCAGGACTATAG.................................2731.3340000000040
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTATA..................................2531.3340000000040
...................TGCCGCTGCCCGCTCAA----AGCAGGC........................................................................................................................................................................................2421.0020001000010
..........................................................................................................................................................................................................TTCAAAACAGTGATCTTCTATTGGATGC.2821.0021100000000
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTCTTG-TT...........................................................................................2731.0030200000010
.................................................................AAGGTAC------ACA---ATG-------G-CCA--CGAAGTTGCCGG-.....................................................................................................................2921.0020000000020
................................................................TAAGGTAC------ACA---ATG-------G-CCA--CGAAGTTGC.........................................................................................................................2721.0020000000020
...................TGCCGCTGCCCGCTCAA----AGCAGGCC.......................................................................................................................................................................................2521.0020200000000
.................................................................................................................................T-GTCTTG-TTTATG---------------------------TTTC---TAGGACTC.............................................2531.0030000000030
...................TGCCGCTGCCCGCTCAA----AGCAGG.........................................................................................................................................................................................2321.0020200000000
..................................................................................................................T--AGC-TAAACCCTT-GTCTTG-TTTATG---------------------------TT..........................................................2731.0030000000030
.................................................................................................................................................................................................TATAGCTCTTTCAAAACAGTGATCTTC...........2721.0020000001010
.................................................................................................................................................................................................TATAGCTCTTTCAAAACAGTGATC..............2421.0020000000020
...........................................................................................................................................................................................................TCAAAACAGTGATCTTCTATTGGATGCT2821.0020000002000
.....................................................................................TG-------G-CCA--CGAAGTTGCCGG-T--AGC-TAAAC.........................................................................................................2721.0020200000000
.................................................................................................................................................................................................TATAGCTCTTTCAAAACAGTGATCT.............2521.0020100001000
................................................AGACAGCAGTCCGAGGTAAGGTAC------A........................................................................................................................................................2521.0020000002000
............................................................GAGGTAAGGTAC------ACA---ATG-------G-CCA--CGAAG.............................................................................................................................2721.0020000000020
...........................................................................................................................................TTATG---------------------------TTTC---TAGGACTCTCAGGACC.....................................2531.0030000000030
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGACTATAGC................................2931.0030000000030
..........................................................................................................TTGCCGG-T--AGC-TAAACCCTT-GTCT................................................................................................2431.0030000002010
...........................................................................................................................................................................................CAGGACTATAGCTCTTTCAAAACAGTGA................2821.0020000000020
..............................................................................................................................................................................................................AAACAGTGATCTTCTATTGGATGC.2421.0020000000020
................................................................TAAGGTAC------ACA---ATG-------G-CCA--CGAAGTT...........................................................................................................................2521.0020100000010
.......................................................................................................................................................................................CTCTCAGGACTATAGCTCTTTCAAAACAG...................2930.6720000000020
......................................................................................................................................TTG-TTTATG---------------------------TTTC---TAGGACTCTCAG.........................................2530.6720000000020
..........................................................................................................TTGCCGG-T--AGC-TAAACCCTT-GTCTTG-.............................................................................................2630.6720100000010
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGACTATA..................................2730.6720000000020
.............................................................................................................................................................................TC---TAGGACTCTCAGGACTATAG.................................2230.6720000000020
.............................................................................................................................................................................TC---TAGGACTCTCAGGACTATAGCTCTC............................2730.6720000000020
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGA.......................................2230.6720000000020
.............................................................................................................................................................................TC---TAGGACTCTCAGGACTATAGC................................2330.6720000000020
..........................................................................................................................................TTTATG---------------------------TTTC---TAGGACTCTCAGGA.......................................2430.6720000000020
..................................................................................................................................................................................TAGGACTCTCAGGACTAT...................................1830.6720000000020
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAG.........................................2030.6720000000020
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTCT................................................................................................2330.6720000001100
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCTTA...........................2630.6720000000020
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTATAA.................................2630.6720000000020
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGG........................................2130.6720001000010
.......................................................................................................................................................................................CTCTCAGGACTATAGCTCTTTCAAA.......................2530.6720000000020
................................................................................................................................TT-GTCTTG-TTTATG---------------------------TTTC---TAGGA................................................2330.6720000000020
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTATAGCA...............................2830.6720000000020
...........................................................................................................................................TTATG---------------------------TTTC---TAGGACTCTCAGGACT.....................................2530.6720000000020
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGTG.................2830.6720100000010
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGAC......................................2130.6720000000020
...........................................................................................................................................................................TTTC---TAGGACTCTCAGGACTATAGCTCTT............................2930.6720000000020
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCTAAT..........................3030.6720000000020
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCAA............................2830.6720000000020
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGACCC....................................2530.6720000000020
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACT.....................................2230.6720100000010
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTCTT...............................................................................................2430.6720100001000
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAAC.....................2430.6720000000020
.............................................................................................................CCGG-T--AGC-TAAACCCTT-GTCTTG-TT...........................................................................................2530.6720000000020
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGACA.....................................2430.6720000000020
.....................................................................................................................................CTTG-TTTATG---------------------------TTTC---TAGGACTCTGT..........................................2530.6720000000020
....................................................................................................................................................................................................................TGATCTTCTATTGGATGCT1920.5010000000010
...........................................................................................................................................................................................................TCAAAACAGTGATCTTCTAT........2020.5010000001000
.................................................................................................................................................................................................TATAGCTCTTTCAAAACAGTGAT...............2320.5010000001000
......................................................CAGTCCGAGGTAAGGTAC------ACA---ATG-------G-C......................................................................................................................................2620.5010000001000
................................TCAA----AGCAGGCCAGACAGCAGTCCGAG........................................................................................................................................................................2720.5010000000010
.........................TGCCCGCTCAA----AGCAGGCCAGACAGCAGT.............................................................................................................................................................................2920.5010000001000
...........................................................................................................................................................................................................TCAAAACAGTGATCTTCTATTGGATGG.2720.5011000000000
..........................................................CCGAGGTAAGGTAC------ACA---ATG-------G-CCA--C.................................................................................................................................2520.5010000000010
..............................................................................................................................................................................................................AAACAGTGATCTTCTATTGGATGCC2520.5010000000010
...............................................CAGACAGCAGTCCGAGGTAAGG..................................................................................................................................................................2220.5010000001000
..........................................CAGGCCAGACAGCAGTCCGAGGTAAGG..................................................................................................................................................................2720.5010000001000
.........................................................TCCGAGGTAAGGTAC------ACA---ATG-------G-CCA--C.................................................................................................................................2620.5010000000010
...................................................CAGCAGTCCGAGGTAAGGTAC------ACA---ATG-------.........................................................................................................................................2720.5010000001000
..............................................................................................................................................................................................................AAACAGTGATCTTCTATTGG.....2020.5010100000000
................................................AGACAGCAGTCCGAGGTAAGGTAC------.........................................................................................................................................................2420.5010000001000
.................................................................AAGGTAC------ACA---ATG-------G-CCA--CGAAGTTGC.........................................................................................................................2620.5010000000010
..................................................ACAGCAGTCCGAGGTAAGGTAC------A........................................................................................................................................................2320.5010000001000
...................TGCCGCTGCCCGCTCAA----AGCAGGCCA......................................................................................................................................................................................2620.5010100000000
.............................CGCTCAA----AGCAGGCCAGACAGCAGTC............................................................................................................................................................................2620.5010000001000
..........................................................CCGAGGTAAGGTAC------ACA---ATG-------G-CCA--..................................................................................................................................2420.5010100000000
.........................................GCAGGCCAGACAGCAGTCCGAGG.......................................................................................................................................................................2320.5010100000000
................................................AGACAGCAGTCCGAGGTAAGG..................................................................................................................................................................2120.5010100000000
...................TGCCGCTGCCCGCTCAA----AGCAGGCCAG.....................................................................................................................................................................................2720.5010000000010
.....................................................................................TG-------G-CCA--CGAAGTTGCCGG-T--AGC-TAAA..........................................................................................................2620.5010000000010
.............................................GCCAGACAGCAGTCCGAGGTAAGGTA................................................................................................................................................................2620.5010000001000
..........................GCCCGCTCAA----AGCAGGCCAGACAGC................................................................................................................................................................................2520.5010000000010
.................................................................................................CA--CGAAGTTGCCGG-T--AGC-TAAACCCTT-G...................................................................................................2820.5010000001000
...................................................CAGCAGTCCGAGGTAAGGTAC------ACA---...................................................................................................................................................2420.5010000001000
....................................................................................ATG-------G-CCA--CGAAGTTGCCGG-T--A.................................................................................................................2120.5010100000000
.........................................................TCCGAGGTAAGGTAC------ACA---ATG-------G-CCA--..................................................................................................................................2520.5010000001000
...........................CCCGCTCAA----AGCAGGCCAGACAGCAG..............................................................................................................................................................................2620.5010000000010
................................................................................................................................................................................................................ACAGTGATCTTCTATTGGAT...2020.5010100000000
.....................................................................................TG-------G-CCA--CGAAGTTGCCGG-T--AGC-TA............................................................................................................2420.5010100000000
...........................................................................................................................................................................................................TCAAAACAGTGATCTTCTATTGGA....2420.5010100000000
.............................CGCTCAA----AGCAGGCCAGACAGCAG..............................................................................................................................................................................2420.5010000000010
...................TGCCGCTGCCCGCTCAA----AGCAGGCCT......................................................................................................................................................................................2620.5010100000000
.........................TGCCCGCTCAA----AGCAGGCCAGACAG.................................................................................................................................................................................2520.5010000000010
.........................................GCAGGCCAGACAGCAGTCCGAGGTA.....................................................................................................................................................................2520.5010100000000
...............................................CAGACAGCAGTCCGAGGTAAGGTAC------.........................................................................................................................................................2520.5010000001000
.................................................................................................CA--CGAAGTTGCCGG-T--AGC-TAAACCCT......................................................................................................2620.5010000001000
..............................................................................................................................................................................................................AAACAGTGATCTTCTATTGGATGCT2520.5010000001000
..........................................CAGGCCAGACAGCAGTCCGAGGT......................................................................................................................................................................2320.5010001000000
...................................................................................................................................................................................................TAGCTCTTTCAAAACAGTGATCTTCTAT........2820.5010100000000
................................................AGACAGCAGTCCGAGGTAAGGTA................................................................................................................................................................2320.5010000001000
.....................................................................TAC------ACA---ATG-------G-CCA--CGAAGTTGCCGG-T--..................................................................................................................2620.5010000000010
.............................CGCTCAA----AGCAGGCCAGACAGCAGT.............................................................................................................................................................................2520.5010000001000
.........................TGCCCGCTCAA----AGCAGGCCAGACAGC................................................................................................................................................................................2620.5010000000010
...........................................................CGAGGTAAGGTAC------ACA---ATG-------G-C......................................................................................................................................2120.5010000001000
..........................................................................................................................................................................................................TTCAAAACAGTGATCTTCTATTGGATG..2720.5010000000010
...................................................CAGCAGTCCGAGGTAAGGTAC------ACA---A..................................................................................................................................................2520.5010000001000
................................................................................A---ATG-------G-CCA--CGAAGTTGCCGG-T--AG................................................................................................................2320.5010000000010
.................................................................................................................................................................................................TATAGCTCTTTCAAAACAGTGATCTT............2620.5010000000010
..........................................................................................................................................................................................................TTCAAAACAGTGATCTTCTATTGGAT...2620.5010000000010
.........................................GCAGGCCAGACAGCAGTCCGA.........................................................................................................................................................................2120.5010000001000
...................................................................................................................................................................................................TAGCTCTTTCAAAACAGTGATCTTC...........2520.5010000000010
...................................................................................................................................................................................................TAGCTCTTTCAAAACAGTGATCTTCT..........2620.5010000000010
.............................................................................................................................................................................TC---TAGGACTCTCAGGACTATAGCTCTTTCAG........................3130.3310000000010
..................................................................................................................T--AGC-TAAACCCTT-GTCTTG-T............................................................................................2030.3310100000000
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTCTTG-TCC..........................................................................................2830.3310000001000
..............................................................................................................................................................................C---TAGGACTCTCAGGACTATAGCTCTT............................2630.3310000000010
..........................................................................................................................................TTTATG---------------------------TTTC---TAGGACTCTCAGT........................................2330.3310000000010
............................................................................................................................................TATG---------------------------TTTC---TAGGACTCTCAGGACTAT...................................2630.3310000000010
..........................................................................................................TTGCCGG-T--AGC-TAAACCCTT-GTCTTG-TCC..........................................................................................2930.3310000001000
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTCTTG-T............................................................................................2630.3310100000000
...................................................................................................................................................................................AGGACTCTCAGGACTATAGCTCTTTCA.........................2730.3310000000010
...............................................................................................................................................G---------------------------TTTC---TAGGACTCTCAGGACTATA..................................2430.3310000000010
..........................................................................................................TTGCCGG-T--AGC-TAAACCCTT-GTCTTG-T............................................................................................2730.3310100000000
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAACAC...................2630.3310000000010
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCTAA...........................2930.3310000000010
...........................................................................................................................................................................................CAGGACTATAGCTCTTTCAAAACAGTG.................2730.3310000000010
......................................................................................................................................................................................ACTCTCAGGACTATAGCTCTTTCAAA.......................2630.3310000000010
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCTA............................2530.3310000000010
........................................................................................................................................G-TTTATG---------------------------TTTC---TAGGACTCTCAGGAC......................................2630.3310000000010
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTATAGCTC..............................2930.3310000000010
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAACC....................2530.3310000000010
.............................................................................................................................................ATG---------------------------TTTC---TAGGACTCTCAGGACTATAGC................................2830.3310000000010
.........................................GCAGGCCAGACAGCAGTCCGAGGAC.....................................................................................................................................................................2530.3310001000000
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGT..................2730.3310000000010
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCTTA...........................2930.3310000000010
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGA..................2730.3310000000010
.............................................................................................................................................ATG---------------------------TTTC---TAGGACTCTCAGGACTA....................................2430.3310100000000
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGCTCTTTCC.........................2830.3310000000010
..................................................................................................................T--AGC-TAAACCCTT-GTCTTG-A............................................................................................2030.3310000000010
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAACAGAT.................2830.3310000000010
.........................................................................................................................................................................................CTCAGGACTATAGCTCTTTCAAAACA....................2630.3310000000010
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATA..................................2230.3310000000010
.................................CAA----AGCAGGCCAGACAGCAGT.............................................................................................................................................................................2130.3310000001000
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCCC........................2130.3310000000010
.......................................................................................................................................TG-TTTATG---------------------------TTTC---TAGGACTCTCAGGACC.....................................2830.3310000000010
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCC.............................2730.3310000000010
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTCTAA-.............................................................................................2530.3310000000010
..........................................................................................................................AAACCCTT-GTCTTG-TTTATG---------------------------TTTC---T....................................................2530.3310000000010
.........................................................................................................................TAAACCCTT-GTCTTG-TTTATG---------------------------TCC.........................................................2430.3310000000010
...........................................................................................................................................TTATG---------------------------TTTC---TAGGACTCTCAGGACTAA...................................2730.3310000000010
................................................................................................................................TT-GTCTTG-TTTATG---------------------------TTTC---TAGGACTC.............................................2630.3310000000010
............................................................................................................................................................................TTC---TAGGACTCTCAGGACTATAGCTCA.............................2730.3310000000010
..................................................................................................................................................................................TAGGACTCTCAGGACTATAGAA...............................2230.3310000000010
...........................................................................................................................................TTATG---------------------------TTTC---TAGGACTCTCAGG........................................2230.3310000000010
...............................................................................................................................................G---------------------------TTTC---TAGGACTCTCAGGACTATAG.................................2530.3310000000010
................................................................................................................................................................................................CTATAGCTCTTTCAAAACAG...................2030.3310000000010
....................................................................................................................................................................................GGACTCTCAGGACTATAGCTC..............................2130.3310100000000
...........................................................................................................................................TTATG---------------------------TTTC---TAGGACTCTCAGGACA.....................................2530.3310000000010
.................................................................................................................................T-GTCTTG-TTTATG---------------------------TTTC---TAGGACTCT............................................2630.3310000000010
..........................................................................................................TTGCCGG-T--AGC-TAAACCCTT-GTCTT...............................................................................................2530.3310000000010
...........................................................................................................................................................................TTTC---TAGGACTCTCAGGACTATAG.................................2430.3310000000010
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTCC................................................................................................2330.3310000001000
...........................................................................................................TGCCGG-T--AGC-TAAACCCTT-GTC.................................................................................................2230.3310000010000
..........................................................................................................TTGCCGG-T--AGC-TAAACCCTT-GT..................................................................................................2230.3310000001000
................................TCAA----AGCAGGCCAGACAGCAG..............................................................................................................................................................................2130.3310000000010
..........................................................................................................................................................................................TCAGGACTATAGCTCTTTCAAAT......................2330.3310000000010
..............................................................................................................................................................................C---TAGGACTCTCAGGACTATAGCTCT.............................2530.3310100000000
...............................CTCAA----AGCAGGCCAGACAGCA...............................................................................................................................................................................2130.3310000000010
...............................CTCAA----AGCAGGCCAGACAGCAG..............................................................................................................................................................................2230.3310000000010
..............................................................................................................................................TG---------------------------TTTC---TAGGACTCTCAGGACTAT...................................2430.3310000000010
.........................................................................................................................TAAACCCTT-GTCTTG-TTTATG---------------------------TTTC---.....................................................2530.3310000000010
............................................................................................................GCCGG-T--AGC-TAAACCCTT-G...................................................................................................1930.3310100000000
.......................................................................................................................................TG-TTTATG---------------------------TTTC---TAGGACTCTCAGGACA.....................................2830.3310000000010
..................................................................................................................................................................................TAGGACTCTCAGGACTATC..................................1940.2510000000010
droPer2
GCA---TTGGCGG------TGCCGCTGCCCCCTCAA----AGCAGGCCAGACAGCAGTCCGAGGTAAGGTAC------ACA---ATG-------G-CCA--CGGAGTTGCCGG-T--AGC-TAAACCCTT-GTCATG-TTTATG---------------------------TTTC---TAGGACTCTCAGGACTATAGCTCTTTCAAAACAGTGCTCTTCTATTGCATGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................TCTCAGGACTATAGCTCT.............................1812.002200000
...................................................................................................................................................................................AGGACTCTCAGGACTATAGCTCT.............................2312.002200000
....................................................................................................................................................................................GGACTCTCAGGACTATAG.................................1812.002200000
.........................................................................................................................................................................................................TTTCAAAACAGTGCTCTTCTATTG......2411.001010000
....................................................................................................................................................................................GGACTCTCAGGACTATAGCTC..............................2111.001100000
....................................................................................................................................................................................GGACTCTCAGGACTATAGCTCT.............................2211.001100000
........................................................................................................................................................................................TCTCAGGACTATAGCTCC.............................1820.501100000
droWil2
GCA---GTGGAGTCAATGGCAATGGCGGCAGCTCAA----AGTTGGCCAAACAGCGCTCTCAAGTAAGCGAA------TGAATCGAG-------G-TCTCACTGCACAACCGGCT--ATT-TATGACT--------T-TTCACA---------------------------TTTA---CAGGACTCCCAGGACTACAGTTCTTTCAAAACGGTTTTATTTTATTGTCTACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........GTCAATGGCAATGGCGGCA.........................................................................................................................................................................................................1912.00201010
........................................................................................................................................................................................TCCCAGGACTACAGTTCT.............................1811.00110000
..................................AA----AGTTGGCCAAACAGCGCTCTCA.........................................................................................................................................................................2411.00100010
.............................AGCTCAA----AGTTGGCCAAACAGCGCTCTC..........................................................................................................................................................................2811.00100100
.......TGGAGTCAATGGCAATGGCGGCAGCT......................................................................................................................................................................................................2611.00101000
...........GTCAATGGCAATGGCGGC..........................................................................................................................................................................................................1811.00100010
...............................................CAAACAGCGCTCTCAAGACT....................................................................................................................................................................2030.33100100
droVir3
GAA---ATGACGG------T-A---------GCCAAAGTAAACTATCCAAACAGCGTGCACATGTATGTAAA-----CACG-A-ATA-------T-TCC---CATATTGCCGGTAGTATT-TAATCGCATTACCTA----CGAA---------------------------TTTA---TAGGACTCGCAGGACTACAGCGCCTTCAAGGTTGTCCTCTTCTACTGCTCCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................ACAGCGCCTTCAAGGTTGTC.................2011.001000000000000000000000000100000000000000000000000000000000000000
.......................................AAACTATCCAAACAGCGTGCACAT........................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................TTACCTA----CGAA---------------------------TTTA---TAGGACC..............................................2211.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TACAGCGCCTTCAAGGTTGTCCTCTT............2611.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................CCTA----CGAA---------------------------TTTA---TAGGACTCG............................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................................GTAAACTATCCAAACAGCGTG.............................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.......................................AAACTATCCAAACAGCGTGC............................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTCAAGGTTGTCCTCTTCTACT.......2211.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................CTACAGCGCCTTCAAGGTTGTCC................2311.001000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................TGTCCTCTTCTACTGCTCCCT2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................GCGCCTTCAAGGTTGTCCTCTTCTACT.......2711.001000100000000000000000000000000000000000000000000000000000000000
GAA---ATGACGG------T-A---------GCCAAAGTAAACTAT.........................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GAG---GTGCAAG------TGATGCCAACCAACAGA----AACTAGCCAAACAGCGTTCACATGTATGTAAA-----CACA---ATG-------A-CCC---CGTTTTGCCGGTT--ATT-TATTTGCTT-GACATG-TAATCA--------------------------TTTTG---TAGGACTCTCAGGACTACAGCGCCTTTAAGGTGGTCCTCTTCTACTGCTCTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................TGCTT-GACATG-TAATCA--------------------------TTTTG---TAG..................................................2511.001010000
droGri2
GTG---GAGGAGA------CGC---TG----GCCACAACAAACTCTCCAAACAGCAATCGGACGTAAGTGAAATGTAAACA---ATT---ACTGG-CCC---CATTTTGCCGGCT--GTA-T----------------TTTC-TTTACAAAATGTAATGCGTCCACAATTTCTTG---AAGGACTCAAAGGACTACAGTGCCTTAAAGGTGGTCCTCTTCTACTGCTCGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
CCGGAAACGGAGC------AGC---------ACAGA----AACAGACCCGCCAGCAGTCACACGTAAA---C------ATT---ACC-------A-GGT---C-ATTTGCCGGCT--GTC-TAATCCCATAGTTTAC-TTTC------------------------------TTA---CAGGACTCGCAGGATTACAGCTCCTTCAAAATAGTCCTTTTCTACTGCATGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..GGAAACGGAGC------AGC---------ACAGA----A..............................................................................................................................................................................................2011.001010000
.....AACGGAGC------AGC---------ACAGA----AACAGA.........................................................................................................................................................................................2211.001100000
..................................................................................................................................................................................................................AGTCCTTTTCTACTGCATGCT2111.001010000
...........GC------AGC---------ACAGA----AACAGACCCG.....................................................................................................................................................................................2011.001100000
..........................................CAGACCCGCCAGCAGTCACACG.......................................................................................................................................................................2211.001000001
droBip1
CCGGAAACGGAGC------AGC---------GCAGA----AACAGACCCGCCAGCAGTCACACGTAA---AC------ATT---GGC-------A-GCT---C-ATTTGCCGGCT--CCC-TAATCCCATAGTTTAC-T----A---------------------------TTTA---CAGGACTCGCAGGACTACAGCTCTTTCAAAACAGTGCTGTTCTACTGCATGCTSizeHit CountTotal NormTotal
No Reads
droKik1
GCA---ACGGAGG------CAATGGAGGCGCCACAA----AACAAACCCGCCAGCAGTCACAGGTAA----C--ATCCCGA---ATC-------G-CCC---CCATTTGCCGGCT--GGCCTAATCCCTT-GTTTAT-TTTC-T---------------------------TCAC---CAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGTATGCTSizeHit CountTotal NormTotal
No Reads
droFic1
GCA---ACGGAGG------AGC---------GCCAA----AACAAACCCGCCAGCAGTCTCATGTAAGTAAC------AAT---ATA-------A-TTT---C-ACTTGCCGGCT--GGCTAATTCCCTT-GTTTAT-TTTGGA---------------------------TGCA---CAGGATTCGCAGGATTACAGCTCCTTCAAGACAGTGCTATTCTACTGCATGCTSizeHit CountTotal NormTotal
No Reads
droEle1
GCA---ACGGAGG------AGG---------GCTGA----AACAAGGCCGCCAGCAATCGCACGTAAGTAAC------TACAT-ACATACATG-G-GTG---C-CAATGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TACC---CAGGACTTGCAGGACTACAGCTCGTTCAAGACGGTCCTGTACTATTGCATGCTSizeHit CountTotal NormTotal
No Reads
droRho1
GCA---ACGGGGG------TGC---------GCCGA----AGCAAACCCGCCAGCAATCCCACGTAAGTAAA------ATC---ATT-------A-GTT---C-AAATGCCGGCT--AGC-TAATCCTTT-GTTTAT-TTTGGA---------------------------TGCC---AAGGACTCGCAGGACTATAGCTCTTTCAAGACAGTCCTATTCTACTGCATGCTSizeHit CountTotal NormTotal
No Reads
droBia1
GCA---ACGGAGG------CGC---------AGCGA----AACAAACCCTGCAGCAGTCGCATGTGAGTAGC------ACG---ATA-------A-CTC---C-ACTTGCCGGCG--GGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TTTC---TAGGACTCGCAGGACTACAGCTCCTTCAAGATAGTGCTCTTCTACTGCATGCTSizeHit CountTotal NormTotal
No Reads
droTak1
GCA---ACGGAGG------TGC---------ATCGA----AACAAAGCCTACAGCAGTCGCATGTGAGTAAC------ATG---AAA-------A-CCC---C-ATTTGCCGGCT--GGCCTAATCCCTT-GTTTAT-TTTGGA---------------------------TTCG---AAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTSizeHit CountTotal NormTotal
No Reads
droEug1
GTG---ATGGAGG------AGC---------ATCAA----AACAAACCCGCCAACAGTCCCATGTAAGTAAA------GTA---ATA-------A-CTT---AACTTTGCCGGCT--TAC-TAATCCCTT-GTTTAT-TTTTG----------------------------TCACACGAAGGATTCGCAGGACTACAGTTCATTCAAGACAGTACTCTTTTACTGCATGCTSizeHit CountTotal NormTotal
No Reads
dm3
GCA---ACGGAGT------TGC---------GCCGA----AACAAACCCGCCAGCAGTCGCACGTATGTAAC------ATG---ACG-------G-CTC---C-GATTGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TGCC---CAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................CCTTCAAGACAGTGCTCTTCTA.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TAATCCCTT-GTTTAT-TTTGG........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCCTTCAAGACAGTGCTCTTCTACT.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TACAGCTCCTTCAAGACAGT..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AGGACTACAGCTCCTTCAAGACA....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................ACTACAGCTCCTTCAAGACAGTGC................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................GCC---CAGGACTCGCAGGACTA....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ACAAACCCGCCAGCAGTCGCA.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TCGCAGGACTACAGCTCCTTCA.........................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CAAACCCGCCAGCAGTCGCAC........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................ACAAACCCGCCAGCAGTC............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................GACTCGCAGGACTACAGCTCCT............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................A----AACAAACCCGCCAGCAGTCGCA.........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AACAAACCCGCCAGCAGTCGCACGAC.....................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................T-GTTTAT-TTTGGA---------------------------TGCC---CAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GTGCTCTTCTACTGCATG..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................TTTAT-TTTGGA---------------------------TGCC---CAG..................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AACAAACCCGCCAGCAGTCGC..........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CCTT-GTTTAT-TTTGGA---------------------------TGCC---.....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................CAGCTCCTTCAAGACAGT..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................ACAGCTCCTTCAAGACAGTG.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................ACCCGCCAGCAGTCGCAC........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CTCGCAGGACTACAGCTCCTTCAAGACA....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TCAAGACAGTGCTCTTCTACTGCATG..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droSim2
GCA---ACGGAGG------AGC---------GCCGA----AACAAACGCGCCAGCAGTCGCACGTATGTAAC------ATG---AGG-------G-CTC---C-AATTGCCGGCT--AGC-TAACCCCTT-GTTTAT-TTTGGA---------------------------TGGC---CAGGACTCGCAGGACTATAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................C---CAGGACTCGCAGGACTA....................................1812.00220000000000000000
............................................................................................................................................................................GGC---CAGGACTCGCAGGAC......................................1811.00110000000000000000
droSec2
GCA---ACGGAGG------TGC---------GCCTA----AACAAACCCGCCAGCAGTCGCACGTATGTAAC------ATG---AGG-------G-CTC---C-AATTGCCGGCT--AGC-TAATCCCTT-GTTTATTTTTGGA---------------------------TGCC---CAGGACTCGCAGGACTATAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................GACTATAGCTCCTTCAAGACAGT..................2314.0040130
..............................................................CGTATGTAAC------ATG---AGG-------G-CTC---C-AATTGG.........................................................................................................................2711.0011000
...................................A----AACAAACCCGCCAGCAGT.............................................................................................................................................................................1911.0010010
...........................................AAACCCGCCAGCAGTCGCAC........................................................................................................................................................................2011.0010010
.............................................................................................................................................................................................................AAGACAGTGCTCTTCTACTGCATGCT2611.0010010
droYak3
GCA---ATGGAGG------GGC---------GCCGA----AACAAACCCGCCAGCAGTCGCACGTATGTAAC------ATG---ATG-------GGCTC---C-AATTGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGA---------------------------TATC---AAGGACTCGCAAGACTACAGCTCCTTCAAAACAGTGCTCTTTTACTGCATGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GCA---ATGGAGG------GGC---------GCCGA----AACAAACACGCCAGCAGTCGCACGTATGTAAA------ATG---ATG-------G-CTC---C-GATTGCCGGCT--AGC-TAATCCCTT-GTTTAT-TTTGGG---------------------------TGAC---AAGGACTCGCAGGACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................CAAACACGCCAGCAGTCGCAC........................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................CTACAGCTCCTTCAAGACAGT..................2111.0010100000

Generated: 05/17/2015 at 11:55 PM