ID:

dps_102

 Coordinate:

Unknown_singleton_576:4367-4441 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.5 -26.5 -26.4 -26.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. Unknown_group_74:17211-17233 -
  2. Unknown_group_89:19648-19670 -
  3. Unknown_group_258:32425-32447 +
  4. Unknown_group_315:4378-4400 -
  5. dps_107  Unknown_singleton_576:2135-2157 +
  6. dps_102  Unknown_singleton_576:4367-4389 -
  7. Unknown_group_80:8573-8595 +
  8. Unknown_group_31:12390-12412 +
  9. Unknown_group_29:15296-15318 +
  10. 2:25235970-25235992 +
  11. Unknown_singleton_552:1646-1668 +
  12. Unknown_group_203:2675-2697 -
  13. Unknown_singleton_3065:1842-1864 +
  14. dps_101  Unknown_group_765:5611-5633 +
  15. Unknown_singleton_1795:1779-1801 +
  16. Unknown_group_553:2757-2779 -
  17. Unknown_singleton_3134:169-191 +
star
  1. Unknown_group_13:77801-77826 -
  2. dps_107  Unknown_singleton_576:2089-2114 +
  3. dps_102  Unknown_singleton_576:4410-4435 -
  4. dps_101  Unknown_group_765:5565-5590 +

Sense Strand Reads

ACGAGTACGGCGGTTCTGTTCCTGCTTACCGATGTTGAGTAGAGAAAGTTGTAATTTGAGGACTTTAGCCCGGCCACGGAGTTGCCTGACGCAATTCACGGCTCCTGGACTAAAGCTATGTCGGCGATCCCTCCATGGCAAGTTCAATATTTAGTCGAGAAATTGCAACGTGAAT
*****************************************........((........(((((((((.((((...(((((((((.....))))))).))....)))).))))))............)))........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
 GSM444067
head
 SRR902012
CNS imaginal disc
 M022
male body		 M062
head
......................................................................................................TCCTGGACTAAAGCTATGTCGGC.................................................. 23 0 17 82.24 1398 437 711 199 13 20 15 0 0 2 1
......................................................................................................TCCTGGACTAAAGCTATGTCGGCG................................................. 24 0 17 55.88 950 556 340 46 5 2 1 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGG................................................... 22 0 17 29.65 504 362 77 41 15 2 5 2 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGGC.................................................. 24 0 17 15.35 261 90 137 13 3 12 5 0 1 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGGCG................................................. 25 0 17 10.06 171 95 74 2 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGA................................................ 25 0 2 8.50 17 8 8 0 1 0 0 0 0 0 0
................................TGTTGAGTAGAGAAAGTTGTAATT....................................................................................................................... 24 0 5 8.40 42 20 8 6 8 0 0 0 0 0 0
........................................................TGAGGACTTTAGCCCGGCCACGGAGT............................................................................................. 26 0 4 5.75 23 6 14 3 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGG................................................... 23 0 17 5.71 97 74 19 0 3 1 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGT................................................ 25 1 17 5.29 90 21 64 4 1 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCG.................................................... 21 0 17 5.24 89 72 13 3 0 0 1 0 0 0 0
.......................................................................................................CCTGGACTAAAGCTATGTCGGCG................................................. 23 0 17 3.06 52 52 0 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGGCGA................................................ 26 0 2 3.00 6 3 3 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGTT............................................... 26 1 3 3.00 9 3 5 0 0 0 1 0 0 0 0
........................................................TGAGGACTTTAGCCCGGCCACGGAG.............................................................................................. 25 0 4 2.75 11 3 8 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTC..................................................... 20 0 20 2.00 40 22 1 5 5 0 6 1 0 0 0
.......................................................................................................CCTGGACTAAAGCTATGTCGGC.................................................. 22 0 17 2.00 34 28 4 1 0 0 1 0 0 0 0
.......................................................................................................CCTGGACTAAAGCTATGTCGG................................................... 21 0 17 1.76 30 30 0 0 0 0 0 0 0 0 0
ACGAGTACGGCGGTTCTGTTCCTGC...................................................................................................................................................... 25 0 20 1.55 31 31 0 0 0 0 0 0 0 0 0
..............TCTGTTCCTGCTTACCGATGTTGAGT....................................................................................................................................... 26 0 20 1.45 29 29 0 0 0 0 0 0 0 0 0
................................................................TTAGCCCGGCCACGGAGTTGCCTGACG.................................................................................... 27 0 4 1.25 5 5 0 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGGCGT................................................ 26 1 17 1.24 21 3 15 1 0 1 0 0 0 0 1
.....................................................................................................CTCCTGGACTAAAGCTATGTCG.................................................... 22 0 17 1.12 19 15 3 1 0 0 0 0 0 0 0
..............TCTGTTCCTGCTTACCGATGTTGAG........................................................................................................................................ 25 0 20 1.10 22 22 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCAA................................................ 25 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0
........................................................TGAGGACTTTAGCCCGGCCACGGA............................................................................................... 24 0 4 1.00 4 1 3 0 0 0 0 0 0 0 0
........................................................................................................CTGGACTAAAGCTATGTCGGC.................................................. 21 0 17 0.94 16 6 4 6 0 0 0 0 0 0 0
.......................................................TTGAGGACTTTAGCCCGGCCACGG................................................................................................ 24 0 4 0.75 3 0 3 0 0 0 0 0 0 0 0
........................................................TGAGGACTTTAGCCCGGCCACGG................................................................................................ 23 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACAAAAGCTATGTCGGC.................................................. 23 1 17 0.71 12 1 10 1 0 0 0 0 0 0 0
..............TCTGTTCCTGCTTACCGATGTTGA......................................................................................................................................... 24 0 20 0.70 14 14 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTTGGC.................................................. 23 1 18 0.61 11 4 0 7 0 0 0 0 0 0 0
..............TCTGTTCCTGCTTACCGATGTTG.......................................................................................................................................... 23 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0
.................................GTTGAGTAGAGAAAGTTGTAATT....................................................................................................................... 23 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0
................................TGTTGAGTAGAGAAAGTTGTAAT........................................................................................................................ 23 0 5 0.60 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGC................................................ 25 1 17 0.59 10 8 2 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACAAAAGCTATGTCGGCG................................................. 24 1 17 0.59 10 0 8 2 0 0 0 0 0 0 0
..................TTCCTGCTTACCGATGTTAAGTA...................................................................................................................................... 23 1 20 0.50 10 10 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGGCGGCGA................................................ 25 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0
ACGAGTACGGCGGTTCTGTTCCT........................................................................................................................................................ 23 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTAGGCGATC.............................................. 27 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGATC.............................................. 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................TTAGCCCGGCCACGGAGTTGCCTGAC..................................................................................... 26 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGATCCC............................................ 29 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................TAGCCCGGCCACGGAGTTGCCTGACG.................................................................................... 26 0 6 0.50 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGAT............................................... 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................CTGGACTAAAGCTATGTCGGCG................................................. 22 0 17 0.41 7 6 1 0 0 0 0 0 0 0 0
..........................TACCGATGTTGAGTAGAGAAAGTTG............................................................................................................................ 25 0 5 0.40 2 2 0 0 0 0 0 0 0 0 0
ACGAGTACGGCGGTTCTGTTCC......................................................................................................................................................... 22 0 20 0.40 8 8 0 0 0 0 0 0 0 0 0
.......................................................................................................CCTGGACTAAAGCTATGTCG.................................................... 20 0 17 0.35 6 5 0 1 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACAAAAGCTATGTCGGC.................................................. 24 1 17 0.35 6 1 5 0 0 0 0 0 0 0 0
................TGTTCCTGCTTACCGATGTTAAGTA...................................................................................................................................... 25 1 20 0.35 7 6 0 0 0 1 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGGCGTT............................................... 27 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTGAAGCTATGTCGGCGA................................................ 25 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGT...................................................... 19 0 20 0.30 6 4 1 1 0 0 0 0 0 0 0
..........................TACCGATGTTGAGTAGAGAA................................................................................................................................. 20 0 20 0.30 6 2 3 1 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGT.................................................. 23 1 17 0.29 5 5 0 0 0 0 0 0 0 0 0
................................................................TTAGCCCGGCCACGGAGTTGCCTGACGC................................................................................... 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
................TGTTCCTGCTTACCGATGTTAAG........................................................................................................................................ 23 1 20 0.25 5 5 0 0 0 0 0 0 0 0 0
.........................................................GAGGACTTTAGCCCGGCCACGGAGT............................................................................................. 25 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0
...............................................................TTTAGCCCGGCCACGGAG.............................................................................................. 18 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
................................................................TTAGCCCGGCCACGGAGTTGC.......................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
........................................................TGAGGACTTTAGCCCGGCCACGGAAT............................................................................................. 26 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0
............................................................GACTTTAGCCCGGCCACGG................................................................................................ 19 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...............................................................TTTAGCCCGGCCACGGAGTTGCCTGAC..................................................................................... 27 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
........................................................TGAGGATTTTAGCCCGGCCACGG................................................................................................ 23 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTC..................................................... 21 0 20 0.25 5 2 0 0 1 0 2 0 0 0 0
.....TACGGCGGTTCTGTTCCTG....................................................................................................................................................... 19 0 20 0.25 5 5 0 0 0 0 0 0 0 0 0
........................................................TGAGGACTTTAGCCCGGCCACGGAA.............................................................................................. 25 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGGCGC................................................ 26 1 17 0.24 4 0 4 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGGCA................................................. 25 1 17 0.24 4 1 3 0 0 0 0 0 0 0 0
...................................................TAATTTGAGGACTTTAGCCCGGC..................................................................................................... 23 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..................................TTGAGTAGAGAAAGTTGTAATT....................................................................................................................... 22 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
................................TGTTGAGTAGAGAAAGTTGTAATTTG..................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
..........................TACCGATGTTGAGTAGAGAAAGT.............................................................................................................................. 23 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
................................TGTTGAGTAGAGAAAGTTGTAACT....................................................................................................................... 24 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0
................................TGTTGAGTAGAGAAAGTTGAAATT....................................................................................................................... 24 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0
............................................AAAGTTGTAATTTGAGGACTTTAG........................................................................................................... 24 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
ACGAGTACGGCGGTTCTGT............................................................................................................................................................ 19 0 20 0.20 4 4 0 0 0 0 0 0 0 0 0
........................................................TGAGAACTTTAGCCCGGCCACGGAGT............................................................................................. 26 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TTAGTCGAGAAATTGCAACGTGAAT 25 0 11 0.18 2 0 2 0 0 0 0 0 0 0 0
...................................................................................................GGCTCCTGGACTAAAGCTATGTCGG................................................... 25 0 17 0.18 3 1 2 0 0 0 0 0 0 0 0
.....................................................................................................CGCCTGGACTAAAGCTATGTCGGC.................................................. 24 1 17 0.18 3 0 0 0 0 3 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCA................................................. 24 1 17 0.18 3 2 0 1 0 0 0 0 0 0 0
......................................................................................................TTCTGGACTAAAGCTATGTCGGCG................................................. 24 1 17 0.18 3 2 1 0 0 0 0 0 0 0 0
....................................................................................................GCTCCTGGACTAAAGCTATGTCGGC.................................................. 25 0 17 0.18 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACAAAAGCTATGTCGG................................................... 22 1 17 0.18 3 0 3 0 0 0 0 0 0 0 0
.........................................................................................................TGGACTAAAGCTATGTCGGCG................................................. 21 0 17 0.18 3 2 1 0 0 0 0 0 0 0 0
......................................................................................................TCTTGGACTAAAGCTATGTCGGCG................................................. 24 1 17 0.18 3 0 2 1 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGTAG.............................................. 27 3 18 0.17 3 0 3 0 0 0 0 0 0 0 0
.................................................................TAGCCCGGCCACGGAGTTGCCT........................................................................................ 22 0 6 0.17 1 0 0 0 0 0 1 0 0 0 0
.................................................................TAGCCCGGCCACGGAGTTGCCTGACAA................................................................................... 27 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.................................................................TAGCCCGGCCACGGAGTTGCCTGA...................................................................................... 24 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.................................................................TAGCCCGGCCACGGAGTTGCCTGACGC................................................................................... 27 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
..............TCTGTTCCTGCTTACCGATGTTGAGTA...................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.CGAGTACGGCGGTTCTGTTCCTGC...................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..............TCTGTTCCTGCTTACCGATGTT........................................................................................................................................... 22 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
..GAGTACGGCGGTTCTGTTCCTG....................................................................................................................................................... 22 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.....TACGGCGGTTCTGTTCCTGC...................................................................................................................................................... 20 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.....TACGGCGGTTCTGTTCCTGCTTACCGA............................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
................TGTTCCTGCTTACCGATGTTGAGTAGA.................................................................................................................................... 27 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.............TTCTGTTCCTGCTTACCGATGTTG.......................................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0 0 0 0 0 0
.................................................................TAGCCCGGCCACGGAGTTGCCTGACGTT.................................................................................. 28 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................CGGCTCCTGGACTAAAGCTATGTCG.................................................... 25 0 16 0.13 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................CCTGGACTAAAGCTATGTCGGCGC................................................ 24 1 17 0.12 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................TATCCTGGACTAAAGCTATGTCGGC.................................................. 25 2 17 0.12 2 2 0 0 0 0 0 0 0 0 0
.........................................................................................................CGGACTAAAGCTATGTCGGCG................................................. 21 1 17 0.12 2 0 2 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACAAAAGCTATGTCGGCGT................................................ 25 2 17 0.12 2 0 2 0 0 0 0 0 0 0 0
.....................................................................................................CTACTGGACTAAAGCTATGTCGGC.................................................. 24 1 17 0.12 2 0 0 0 0 2 0 0 0 0 0
....................................................................................................GCTCCTGGACTAAAGCTATGTCGG................................................... 24 0 17 0.12 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................GGCTCCTGGACTAAAGCTATGTCGGC.................................................. 26 0 17 0.12 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................TCATGGACTAAAGCTATGTCGGC.................................................. 23 1 17 0.12 2 0 0 0 0 2 0 0 0 0 0
......................................................................................................TTCTGGACTAAAGCTATGTCGGC.................................................. 23 1 17 0.12 2 1 1 0 0 0 0 0 0 0 0
........................................................................................................CTGGACTAAAGCTATGTCGG................................................... 20 0 17 0.12 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGCCGGC.................................................. 23 1 17 0.12 2 0 2 0 0 0 0 0 0 0 0
.......................................................................................................CCTGGACTAAAGCTATGTCGGCGT................................................ 24 1 17 0.12 2 2 0 0 0 0 0 0 0 0 0
..........................TACCGATGTTGTGTAGAAAAA................................................................................................................................ 21 2 18 0.11 2 0 2 0 0 0 0 0 0 0 0
................................................................................................CACGGCTCCTGGACTAAAGCTATG....................................................... 24 0 18 0.11 2 2 0 0 0 0 0 0 0 0 0
..........................................................................CACGGAGTTGCCTGACGC................................................................................... 18 0 9 0.11 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................TCCTGGACTAAAGCTATGTTGGCG................................................. 24 1 18 0.11 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGAC.................................................. 23 1 18 0.11 2 0 1 0 0 1 0 0 0 0 0
......................................................................................................TCCTGGACTGAAGCTATGTCGGC.................................................. 23 1 19 0.11 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................CCTGGACTGAAGCTATGTCGGC.................................................. 22 1 19 0.11 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTGAAGCTATGTCGGCG................................................. 24 1 19 0.11 2 2 0 0 0 0 0 0 0 0 0
ACGAGTACGGCGGTTCTGTTA.......................................................................................................................................................... 21 1 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.....TACGGCGGTTCTGTTCCTGCT..................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.............TTCTGTTCCTGCTTACCGATGT............................................................................................................................................ 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
ACGAGTACGGCGGTTCTGTTCCTGCT..................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
.CGAGTACGGCGGTTCTGTTCCTG....................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..............TTTGTTCCTGCTTACCGATGTTAAGTA...................................................................................................................................... 27 2 20 0.10 2 1 0 0 0 1 0 0 0 0 0
......................................................................CGGCCACAGAGTTGCCTGACGCAATTT.............................................................................. 27 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................CGGCTCCTGGACTAAAGCTATGTCGG................................................... 26 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
................................................................................................TACAGATCCTGGACTAAAGCTATGTCG.................................................... 27 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
................................................................................................CACGGCTCCTGGACTAAAGCTATGTCGG................................................... 28 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................ACGGCTCCTGGACTAAAGCTATGTCGG................................................... 27 0 16 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGAGC................................................ 25 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................GACTAAAGCTATGTCGGC.................................................. 18 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................CTGGACTAAAGCTATGTCGGCGT................................................ 23 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCAGGACTAAAGCTATGTCGGC.................................................. 23 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................TCTGGACTAAAGCTATGTCGGC.................................................. 22 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGACG................................................. 24 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGACGGCG................................................. 24 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGCC.................................................. 23 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................CTCCTGGACAAAAGCTATGTCGG................................................... 23 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TTCTGGACTAAAGCTATGTCGG................................................... 22 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGCCGT................................................ 26 2 17 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCGTC............................................... 26 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TATTTAGTCGAGAAATTGCAACG..... 23 0 17 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCTTGGACTAAAGCTATGTCGGC.................................................. 23 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................TGGACTAAAGCTATGTCGGCT................................................. 21 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TGCTGGACTAAAGCTATGTCGGC.................................................. 23 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................TCCTGGACGAAAGCTATGTCGGC.................................................. 23 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................CGCTTGGACTAAAGCTATGTCGGC.................................................. 24 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................TCCTGGACTAATGCTATGTCGGC.................................................. 23 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCCGGACTAAAGCTATGTCGGCG................................................. 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................CGCCTGGGCTAAAGCTATGTCGGCGT................................................ 26 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................TCCTGAACTAAAGCTATGTCGG................................................... 22 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................CCTGGACAAAAGCTATGTCGGCG................................................. 23 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGTTATGTCGG................................................... 22 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................CTGGACTAAAGCTATGTCG.................................................... 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................CCCTGGACTAAAGCTATGTCGG................................................... 22 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................ACTAAAGCTATGTCGGCG................................................. 18 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................ACTCCTGGACTAAAGCTATGTCGG................................................... 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................GTCTCCTGGACTAAAGCTATGTCGGC.................................................. 26 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAACCTATGTCGG................................................... 23 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGCAC................................................ 25 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGAG................................................. 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTGTGTCG.................................................... 21 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................GTCCTGGACTAAAGCTATGTCGGC.................................................. 24 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAATGCTATGTCGG................................................... 22 1 17 0.06 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................GCTCCTGGACTAAAGCTATGTCGGCG................................................. 26 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTGTGTCGG................................................... 22 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................ATCTGGACTAAAGCTATGTCGGCG................................................. 24 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................TTGGACTAAAGCTATGTCGGC.................................................. 21 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACAAAAGCTATGTCGGCG................................................. 25 1 17 0.06 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................TGGACTAAAGCTATGTCGG................................................... 19 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TGGACTAAAGCTATGTCGGC.................................................. 20 0 17 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGA.................................................. 23 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAATCTATGTCGGC.................................................. 23 1 17 0.06 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................GGACTAAAGCTATGTCGG................................................... 18 0 17 0.06 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................TGCACGGCTCCTGGACTAAAGCTATG....................................................... 26 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................TCCTGGACTCAAGCTATGTCGGC.................................................. 23 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................CTGGACAAAAGCTATGTCGG................................................... 20 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAGGCTATGTCGG................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGCGG................................................. 24 2 18 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGATA................................................. 24 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTGGGCGT................................................ 25 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGGGG................................................. 24 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTCAAGCTATGTCGGC.................................................. 24 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TCAATATTTAGTCGAG................ 16 0 18 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGTCGA................................................... 22 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCATGGACTAAAGCTATGTCGAC.................................................. 23 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................TCCTGGACTAAGGCTATGTCGGCG................................................. 24 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAGGCTATGTCGGC.................................................. 23 1 18 0.06 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATCTCGGC.................................................. 23 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATGGGGGC.................................................. 23 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................CAAGTTCAATATTTAGTCG.................. 19 0 19 0.05 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTGAAGCTATGTCGGC.................................................. 24 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TCTGGACTAAAGCTATGTCGGCGT................................................ 24 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTGAAGCTATGTCGGT.................................................. 23 2 19 0.05 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................TTCTGGACTAAAGCTATGTCGGCGT................................................ 25 2 19 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTACGTCGGCGT................................................ 25 2 19 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................TTCTGGACTAAAGCTATGTCG.................................................... 21 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTGAAGCTATGTCGG................................................... 22 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CCTGGACTGAAGCTATGTCGGCG................................................. 23 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTACGTCGGCG................................................. 24 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
..GAGTACGGCGGTTCTGTTCCTGC...................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.CGAGTACGGCGGTTCTGTTC.......................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
ACGGGTACGGCGGTTCTGTTCCTGT...................................................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................TGTTCCTGCTTACCTATGTTGAGTAGA.................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAACTATGTCGGC.................................................. 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................TGTTCCTGCTTACCGATGTTGAG........................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATGTCGT................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..GAGTACGGCGGTTCTGTTC.......................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................GCTTACCGATGTTGAGTAGAG................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............TCTGTTCCTGCTTACCGACGTTG.......................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............TGTGTTCCTGCTTACCGATGT............................................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................TTCCTGCTTACCGATGTTGAGTA...................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............CTGTTCCTGCTTACCGATGTTGAGTA...................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....TACGGCGGTTCTGTTCCTGCTTACC................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTACAGCTATGTCGG................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CCTGGACTAAAGCTATGTC..................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...........GGTTCTGTTCCTGCTTACCGA............................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.CGAGTACGGCGGTTCTGTAAA......................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................GACTCCTGGACTAAAGCTATGTC..................................................... 23 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0
................................................................................................CACGGCTCCTGGACTAAAGA........................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......ACGGCGGTTCTGTTCCTG....................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....TACGGCGGTTCTGTTCCTGCTT.................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..GAGTACGGCGGTACGCTT........................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.CGAGTACGGCGGTTCTGTTCCTGCT..................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........GCGGTTCTGTTCCTGCTTACCGATGT............................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
......ACGGCGGTTCTGTTCCTGCTA.................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.CGAGTACGGCGGTTCTGTT........................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............TTCTGTTCCTGCTTACCGATGTT........................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................TGTAATTTGAGGACTTTAG........................................................................................................... 19 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................TCCTGGACTAAAGCTATG....................................................... 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
ACGAGTACGGCGGTTCTGTA........................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................CTCCTGGACTAAAGCTATG....................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................CTTACCGATGTTGAGTAGAGAA................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................TCCTGCTTACCGATGTTGAGTAG..................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
................TGTTCCTGCTTACCGATGTTGAGTAG..................................................................................................................................... 26 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0
......ACGGCGGTTCTGTTCCTGCT..................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
ACGAGTTCGGCGGTTCTGTTCCTGC...................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.............TTCTGTTCCTGCTTACCGATG............................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.....TACGGCGGTTCTGTTCCTGCTTACCG................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
ACGAGTACGGCGGTTCTG............................................................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..................TTCCTGCTTACCGATGTTAAGT....................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................TCCTGCTTACCGATGTTGAGTAGAGA.................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
............GTTCTGTTCCTGCTTACCGATGT............................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGCTCATGCCGCCAAGACAAGGACGAATGGCTACAACTCATCTCTTTCAACATTAAACTCCTGAAATCGGGCCGGTGCCTCAACGGACTGCGTTAAGTGCCGAGGACCTGATTTCGATACAGCCGCTAGGGAGGTACCGTTCAAGTTATAAATCAGCTCTTTAACGTTGCACTTA
***********************************........((........(((((((((.((((...(((((((((.....))))))).))....)))).))))))............)))........))***************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 SRR902011
testis
 V112
male body		 M059
embryo
 GSM343916
embryo
 M062
head
 M022
male body		 GSM444067
head
....................GGACGAATGGCTACAACTCATC..................................................................................................................................... 22 0 20 19.25 385 351 13 9 0 7 4 0 0 1
...................AGGACGAATGGCTACAACTCATC..................................................................................................................................... 23 0 20 16.80 336 275 42 4 4 5 5 0 1 0
..................................................................................................................................................TATAAATCAGCTCTTTAACGTTGCACT.. 27 0 15 5.67 85 60 6 9 0 8 0 2 0 0
.....................................................................................................................................................AAATCAGCTCTTTAACGTTGCACT.. 24 0 15 3.27 49 28 11 3 0 5 0 2 0 0
..................AAGGACGAATGGCTACAACTCATC..................................................................................................................................... 24 0 20 3.10 62 53 9 0 0 0 0 0 0 0
.....................GACGAATGGCTACAACTCATC..................................................................................................................................... 21 0 20 2.90 58 56 0 0 1 0 1 0 0 0
..........................................................................................CGTTAAGTGCCGAGGACCTGAT............................................................... 22 0 2 2.50 5 5 0 0 0 0 0 0 0 0
.........................................................................GGGGCCTCAAAGGTCTGCGT.................................................................................. 20 3 11 2.27 25 23 0 0 0 0 2 0 0 0
....................................................................................................................................................TAAATCAGCTCTTTAACGTTGCACT.. 25 0 15 1.87 28 24 0 2 0 2 0 0 0 0
................ACAAGGACGAATGGCTACAACTCATC..................................................................................................................................... 26 0 20 1.85 37 32 2 0 2 0 0 1 0 0
...................................................................................................................................................ATAAATCAGCTCTTTAACGTTGCACT.. 26 0 15 1.67 25 14 4 2 1 3 0 1 0 0
.........................................................................................GCGTTAAGTGCCGAGGACCTGAT............................................................... 23 0 2 1.50 3 3 0 0 0 0 0 0 0 0
.................CAAGGACGAATGGCTACAACTCATC..................................................................................................................................... 25 0 20 1.50 30 0 2 26 1 0 1 0 0 0
............................................................................................................................................TCAAGTTATAAATCAGCTCTTTAACGT........ 27 0 15 1.47 22 12 6 3 0 0 0 0 1 0
..........................................................................GGGCCTCAAAGGTCTGCGT.................................................................................. 19 3 20 1.35 27 27 0 0 0 0 0 0 0 0
....................GGACGAATGGCTACAACTCAT...................................................................................................................................... 21 0 20 1.30 26 26 0 0 0 0 0 0 0 0
...................AGGACGAATGGCTACAACTCAT...................................................................................................................................... 22 0 20 1.15 23 21 2 0 0 0 0 0 0 0
...........CCAAGACAAGGACGAATGGCTACAA........................................................................................................................................... 25 0 20 1.10 22 1 21 0 0 0 0 0 0 0
.............................................................................................................................................CAAGTTATAAATCAGCTCTTTAACGT........ 26 0 15 1.07 16 8 7 1 0 0 0 0 0 0
.......................................................................................CTGCGTTAAGTGCCGAGGACCTGAT............................................................... 25 0 2 1.00 2 1 0 0 1 0 0 0 0 0
........................................................................................................................................GCTTTCAAGTTATAAATCAGCTCTT.............. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
...............GACAAGGACGAATGGCTACAACTCATC..................................................................................................................................... 27 0 20 0.90 18 11 4 3 0 0 0 0 0 0
......................................................................................................................................................AATCAGCTCTTTAACGTTGCACT.. 23 0 15 0.73 11 10 0 1 0 0 0 0 0 0
.......................................................................................................................................................ATCAGCTCTTTAACGTTGCACT.. 22 0 15 0.73 11 7 3 1 0 0 0 0 0 0
........................................................................CGGGGCCTCAAAGGTCTGCGT.................................................................................. 21 3 9 0.67 6 6 0 0 0 0 0 0 0 0
..................................................................................................................................................TATAAATCAGCTCTTTAACGTTGCAC... 26 0 15 0.53 8 8 0 0 0 0 0 0 0 0
.............................................................................................TAAGTGCCGAGGACCTGATTTCGAT......................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................GGACGAATGGCTACAACTCATCT.................................................................................................................................... 23 0 20 0.50 10 10 0 0 0 0 0 0 0 0
..............................................................................................................................TAGGGAGGTACCGTTCAAGTTATAAAT...................... 27 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................GCCGCTAGGGAGGTACCGTTCAAGT............................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0
........................................................................................TGCGTTAAGTGCCGAGGACCTGAT............................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................CCGCTAGGGAGGTACCGTTCAAGT............................. 24 0 2 0.50 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................TAGGGAGGTACCGTTCAAGTTA........................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................TAGGGAGGTACCGTTCAAGTTAT.......................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TACAGCCGCTAGGGAGGTACCGT................................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................GGAGGTACCGTTCAAGTTATAAA....................... 23 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................GGACTGCGTTAAGTGCCGAGGACCTGAT............................................................... 28 0 2 0.50 1 0 0 0 1 0 0 0 0 0
......................................................................................................................ACAGCCGCTAGGGAGGTACCGTTCAAGT............................. 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................CAGCTCTTTAACGTTGCACT.. 20 0 15 0.47 7 7 0 0 0 0 0 0 0 0
..............AGACAAGGACGAATGGCTACAACTCATC..................................................................................................................................... 28 0 20 0.35 7 7 0 0 0 0 0 0 0 0
.................CAAGGACGAATGGCTACAACTCAT...................................................................................................................................... 24 0 20 0.35 7 6 0 1 0 0 0 0 0 0
.....................................................................................................................................................AAATCAGCTCTTTAACGTTGCAC... 23 0 15 0.33 5 5 0 0 0 0 0 0 0 0
...................AGGTCGAATGGCTACAACTCATC..................................................................................................................................... 23 1 20 0.30 6 6 0 0 0 0 0 0 0 0
...........CCAAGACAAGGACGAATGGCTACA............................................................................................................................................ 24 0 20 0.30 6 0 6 0 0 0 0 0 0 0
........................................................................CGGGGCCTCAAAGGTCTGCG................................................................................... 20 3 11 0.27 3 3 0 0 0 0 0 0 0 0
...........................................................................................................................CGCTGGGGTGGTACCGTTC................................. 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0
.................AAAGGACGAATGGCTACAACTCATC..................................................................................................................................... 25 1 20 0.25 5 3 0 1 0 0 1 0 0 0
.......................CGAATGGCTACAACTCATC..................................................................................................................................... 19 0 20 0.25 5 4 1 0 0 0 0 0 0 0
..................AAGGACGAATGGCTACAACTCAT...................................................................................................................................... 23 0 20 0.20 4 3 1 0 0 0 0 0 0 0
..............AGACAAGGACGAATGGCTACAACTCAT...................................................................................................................................... 27 0 20 0.20 4 2 2 0 0 0 0 0 0 0
.GCTCATGCCGCCAAGACAAGGAC....................................................................................................................................................... 23 0 20 0.20 4 4 0 0 0 0 0 0 0 0
........................................................................................................................................................TCAGCTCTTTAACGTTGCACT.. 21 0 15 0.20 3 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATCAGCTCTTTAACGTTGCAC... 21 0 15 0.20 3 3 0 0 0 0 0 0 0 0
....................................................................................................................................................AAAATCAGCTCTTTAACGTTGCACT.. 25 1 15 0.20 3 0 0 3 0 0 0 0 0 0
..................................................................................................GCCGAGGACCTGATTTCGATAC....................................................... 22 0 18 0.17 3 3 0 0 0 0 0 0 0 0
...................AGGACGAATGGCTACAACTCA....................................................................................................................................... 21 0 20 0.15 3 3 0 0 0 0 0 0 0 0
.......................CGAATGGCTACAACTCATCTC................................................................................................................................... 21 0 20 0.15 3 3 0 0 0 0 0 0 0 0
....................GGACGAATGGCTACAACTCAGC..................................................................................................................................... 22 1 20 0.15 3 0 0 0 0 3 0 0 0 0
.GCTCATGCCGCCAAGACAAGGA........................................................................................................................................................ 22 0 20 0.15 3 3 0 0 0 0 0 0 0 0
.....................GACGAATGGCTACAACTCAT...................................................................................................................................... 20 0 20 0.15 3 2 1 0 0 0 0 0 0 0
...........................................................................................................................................TTCAAGTTATAAATCAGCTCTTTAACGT........ 28 0 15 0.13 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................AATAAATCAGCTCTTTAACGTTGCACT.. 27 1 15 0.13 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAATCAGCTCTTTAACGTTGCA.... 22 0 16 0.13 2 2 0 0 0 0 0 0 0 0
.........................................................................GGGGCCTCAAAGGTCTGCG................................................................................... 19 3 17 0.12 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................TATAAATCAGCTCTTTAACGT........ 21 0 17 0.12 2 2 0 0 0 0 0 0 0 0
................................................................................................GTGCCGAGGACCTGATTTCGATAC....................................................... 24 0 18 0.11 2 2 0 0 0 0 0 0 0 0
.......................................................................CCGGTGCCTCAACGGACTGCG................................................................................... 21 0 9 0.11 1 1 0 0 0 0 0 0 0 0
..............AGACAAGGACGAATGGCTACAACT......................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.................CAAGGACGAATGGCTACAACTCA....................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0
............CAAGACAAGGACGAATGGCTACAA........................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0 0 0 0 0
....................GGACGAATTGCTACAACTCATC..................................................................................................................................... 22 1 20 0.10 2 2 0 0 0 0 0 0 0 0
..CTCATGCCGCCAAGACAAGGAC....................................................................................................................................................... 22 0 20 0.10 2 2 0 0 0 0 0 0 0 0
TGCTCATGCCGCCAAGACAAGGAC....................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
...................AGGACGAATGGCTACAACTCATCTC................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0
....CATGCCGCCAAGACAAGGACG...................................................................................................................................................... 21 0 20 0.10 2 1 0 1 0 0 0 0 0 0
....................GGACGAATGGCTACAACTCATCTC................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.GCTCATGCCGCCAAGACAAGGACGAAT................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.............AAGACAAGAACGAATGGCT............................................................................................................................................... 19 1 20 0.10 2 0 2 0 0 0 0 0 0 0
.............AAGACAAGGACGAATGGCTACAACTCAT...................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0 0 0 0 0
...................AGGTCGAATGGCTACAACTCATCT.................................................................................................................................... 24 1 20 0.10 2 2 0 0 0 0 0 0 0 0
....................GGACGAATGGCTACAACTCATCTCT.................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0 0 0 0 0
..........GCCAAGACAAGGACGAATGGCTACAA........................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0 0 0 0 0
.....................GACGAATGGCTACAACTCATCTC................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0 0 0 0 0
...TCATGCCGCCAAGACAAGGAC....................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0 0 0 0 0
...........CCAAGACAAGGACGAATGGCTACAACT......................................................................................................................................... 27 0 20 0.10 2 0 1 1 0 0 0 0 0 0
......................ACGAATGGCTACAACTCATCTCTT................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0 0 0 0 0
...................................................................................................CCGAGGACCTGATTTCGATAC....................................................... 21 0 20 0.10 2 1 1 0 0 0 0 0 0 0
........................................................................................................................................................TCAGCTCTTTAACGTTGCACTTA 23 0 11 0.09 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................AGCTCTTTAACGTTGCACT.. 19 0 15 0.07 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAATCAGCTCTTTAACGTTGCACA.. 24 1 15 0.07 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TATAAATCAGCTCATTAACGTTGCACT.. 27 1 15 0.07 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAATCAGCTCTTTAACGTTGCACTT. 25 0 15 0.07 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AATCAGCTCTTTAACGTTGCACTT. 24 0 15 0.07 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TATAAATCAGCTCTTTAACGTCGCACT.. 27 1 15 0.07 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATCAGCTCTTTAACGTTGCACTT. 23 0 15 0.07 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................TCAAGTTATAAATCAGCTCTTTAACTT........ 27 1 15 0.07 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................TATAAATCAGCTCTTTAACGTTGCACTT. 28 0 15 0.07 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................TCAAGTTATAAATCAGCTCTT.............. 21 0 15 0.07 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATCAGCTCATTAACGTTGCACT.. 22 1 15 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................GTTATAAATCAGCTCTTTAACGT........ 23 0 15 0.07 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................TCAAGTTATAAATCAGTTCTTTAA........... 24 1 15 0.07 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAATCAGCTCTTTAACGTTGCACTGG 26 2 15 0.07 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................TTCAAGTTATAAATCAGCTCTT.............. 22 0 15 0.07 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................TCAGCTCTTTAACGTTGCAC... 20 0 15 0.07 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................ATAAATCAGCTCTTTACCGTTGCACT.. 26 1 15 0.07 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................AATCAGCTCATTAACGTTGCACT.. 23 1 15 0.07 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................TCAAGTTATAAATCAGCTCTTT............. 22 0 15 0.07 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................AAATCAGCTCTTTAACGTTGCAGT.. 24 1 16 0.06 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................TTATAAATCAGCTCTTTAACG......... 21 0 16 0.06 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................ATAAATCAGCTCTTTAACGTTGCA.... 24 0 16 0.06 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TATAAATCAGCTCTTTAACGTTG...... 23 0 17 0.06 1 1 0 0 0 0 0 0 0 0
................ACAAGGACGAATGGCTACAACTCATCTC................................................................................................................................... 28 0 19 0.05 1 1 0 0 0 0 0 0 0 0
.................CAAGGACGAATGGCTACAACTC........................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
....................................................................................................CGAGGACCTGATTTCGATAC....................................................... 20 0 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................................TGAGGACCTGTTTTCGATACA...................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0 0 0
....................GGACGAATGGCTAAAACTCATC..................................................................................................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0
.........CGCCAAGACAAGGACGAATGGCTACAAC.......................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...............GACAAGGACGAATGGCTACAACTCAT...................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.......GCCGCCAAGACAAGGA........................................................................................................................................................ 16 0 20 0.05 1 0 1 0 0 0 0 0 0 0
....................GGACGAATGGCTACAACTCA....................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
....CATGCCGCCAAGACAAGGACGA..................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
......................ACGAATGGCTACAACTCATCTC................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.................CAAGGACGAATGGCTACAACTCATCT.................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...................AGGACGAATGGCTACAACCCATC..................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
....................GGACGAATGGCTACAGCTCATC..................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0
....................GGACGAATGGTTACAACTCATC..................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0
............CAAGACAAGGACGAATGGCT............................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0
....CATGCCGCCAAGACAAGGACGAA.................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0
............CAAGACAAGGACGAATGGCTA.............................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..........GCCAAGACAAGGACGAATGGCTACA............................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0 0 0 0 0
........CCGCCAAGACAAGGACGAATGGCTA.............................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0 0 0 0 0
................ACAAGAACGAATGGCTATAACTCATC..................................................................................................................................... 26 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..............AAAAAAGGACGAATGGCTACAACTCATC..................................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0 0 0 0 0
................ACAAGGACGAATGGCCACAACTCATC..................................................................................................................................... 26 1 20 0.05 1 0 0 0 0 0 0 0 0 1
.....................GACGAATGGCTACAACTCATCTCT.................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0
................AAAAGGACGAATGGCTACAACTCATC..................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.......................CGAATGGCTACAACTCATCT.................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...........CCAAGACAAGGACGAATGGCTACAAC.......................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
....................GGGCGAATGGCTACAACTCATC..................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..................AAGGACGAATGGCTACAACTCGTC..................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................ACAAGGACGAATGGCTACAACTCATCT.................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0
TGCTCATGCCGCCAAGACAAGTAC....................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.................CAAGGACGAATGGCTAAAACTCATC..................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 1 0 0 0 0
............CAAGACAAGGACGAATGGCTACAACT......................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...................AGGACGAATGGCTACGACTCATC..................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.....ATGCCGCCAAGACAAGGAC....................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0
..................AAGGTCGAATGGCTACAACTCATC..................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................ACAAGGTCGAATGGCTACAACTCATC..................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...................AGGACGAATGGCTACAACTCATCTCTT................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.GCTCATGCCGCCGAGACAAGGAC....................................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.......GCCGCCAAGACAAGGACGAATGGC................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0 0 0 0 0
....CATGCCGCCAAGACAAGGACGAAT................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.................AAAGGTCGAATGGCTACAACTCATC..................................................................................................................................... 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..CTCATGCCGCCAAGACAAGG......................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...................AGGACGAATGGATACAACTCATC..................................................................................................................................... 23 1 20 0.05 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................GCGCTGGGGTGGTACCGTT.................................. 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
....................GGACGAATGGCTACAACTC........................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...............GACAAGGACGAATGGCTACAACT......................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................GACGAATGGCTACAACTCATCTGTG................................................................................................................................. 25 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.GCTCATGCCGCCAAGACAAGGACGAA.................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0 0 0 0 0
...TCATGCCGCCGAGACAAAGACGA..................................................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0 0 0 0 0
................ACAAGGAAGAATGGCTAAAACTCATCTC................................................................................................................................... 28 2 20 0.05 1 0 0 0 0 1 0 0 0 0
...................AGGACGAATGGCTACAGCTCATC..................................................................................................................................... 23 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................................CGGGATTTCGATAAAGCCGC................................................. 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0
...............GACAAGGACGAATGGCTACAGCTCATC..................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0 0 0 0
..................AAGGACGAATGGCTACAGCTCATC..................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0 0 0 0
................ACAAGGACGAATGGCTACAA........................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0
....................GGACGAATGGCTACAACTCGTC..................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0 0 0 0 0
.......GCCGCCAAGACAAGGAC....................................................................................................................................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.......GCCGCCAAGACAAGGACG...................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0 0 0 0 0
.................CAAGGACGAATGGCTACAGCTCATC..................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_singleton_576:4317-4491 - dps_102 ACGAGTA----CG-GCGGTTCTGTTCCTGCTTACCGATGTTGAGTAGAGAAAGTTGTAATTTGAGGACTTTAGCCCGGCCACGGAGTTGCCTGACGCAATTCACGGCTCCTGGACTAAAGCTATGTCGGCGATCCC-----TCCATGGCAAGTTCAATATTTAGTCGAGAAATTGCAACGTGAAT--------
droPer2 scaffold_119:87308-87452 + ACGAGTA----CG-GCGGTTCTGTTCCTGCTTACCGATGTTGAGTAGAGAAGGTTGTAATTTGAGGACTCTAGCCCGGCCACGGAGTTGCCTGACGCAATCCACGGCTCCTGGACTAAAGCTATGTCGGCGGGCCCTTGC-TCCATGGTAA------------------------------------------
droWil2 scf2_1100000004909:1144084-1144193 - ACCATGA----CG-GCCGTTCTGGTTCTTCTTACTGTGGTGTGGTATAAGAGATAAA----AGATGATCTCAGCCCGGAAACCGTGTTGCCTGA---------CGGTTTCTGGACTAGAGCGACGTCG-----------------------------------------------------------------
droVir3 scaffold_12956:78794-78889 - CTGA-CGCAGCTCAAACTTCCTATC------------------------------------------------------------------------------------------AAAGCCCATAACGGCTATCTCATAT-TTAA-AACAGGAACCAT----AGACATTCCGACAGATTACGAATTCCACTGT
droMoj3 scaffold_6450:39286-39315 + AATATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------AATAGACAAATTAAATCGCCAAA--------
droGri2 scaffold_14854:8694-8830 + GTGGATG----CA-GGTGCG-TTTTTTTACCTTCATTGCCAGCTACTAACAGCTCGTAATTTTTGTTGCCTAGTCCGCAAACT---TTTCCTCCAACCACCCAAGGTTCTTGGACTAGTACTATGTCGTCT-----CCGCCTCCAGGCAGG------------------------------------------
droAna3 scaffold_12911:1511049-1511197 + GCGAGTA----TG-CATGCTCGCTTTTTACCTGTTACATCGGCTGTGTACAGCCGGAAGTCCCACGCCCCCAGACCGAGAATC---CTGTCTCCGTGGATCCAGGGTTCTTGGATGAGGGCCACGTCAGCTCC-----AT-TCTCTGCAAG-ATGGAGAATT---------------------AG--------
droBip1 scf7180000394914:20352-20485 + GCGAGGA----TG-CAGGCTCGCCCTTTACCTGTTGTATCGGCTTTGCAGAGCCTATACTCTGACGCCCCTAACCGAAGAATC---CTGTCTCCAATGATCC---GTTCCTGGATGAAGGCCATATCAGC-----TCCAC-TCTCGGCGAG------------------------------------------
droKik1 scf7180000301872:4630-4772 - ACAAGTA----CG-GCGGTTCTATTCCTGCTTACCGTTGGTGAATGGAGAAAATTGTAATTTGCGGACTTCAGTCCGGCGATGGCATTGCCTGAGGCGATCCATGGCTCCTGGACCAAAGCTATGTCGGCGGATCCTTGC-TCCATGGC--------------------------------------------
droFic1 scf7180000452125:11066-11156 + GT----------------TTCTGTTCCTGCTTACCGCTGCTGAAATGAAATTGTTGTAACTTGAGGTCTTCAGTCCGGCTGCGGCATTGTGCGGGGTGACCTATAGC--------------------------------------------------------------------------------------
droEle1 scf7180000490544:7994-8138 - ACTTGGA----TG-GCGGTCCTGTTCCTGCTTACCGGTGGTGAGTATAATGGGTTGTAATTTAGCGATTTTAGTTCGGCTACGGTGTGGCATGAGGCGATCCATGGCTCCTGGACCAGAGCTATGTCGACGGATCCCTGC-TCCAGGGCAA------------------------------------------
droRho1 scf7180000779310:479-598 + TAAAATG----CA---GGTTCGAATTTTACCTTGTTTCGGGTCAAGCATAAGCTTGTAATCTTTAGATCCTAGTCCAGCAACC---CTGCCTCCTGCTACCCAGGGTTCCTGAACTAAGACCACGTCGGC---------------------------------------------------------------
droBia1 scf7180000302042:30729-30872 - ACAAGTA----CG-GCGCTTCTGTTCCTACATACAGTTGGTGAGTATAATGTATTGTAGTTTGAAGACCTTAGACCGGCAACGATACTGC-CGAGGCAATTCATGGCTCTTGAACCAAGGCTATGTCGAAGGTTCCCTGC-TCCAAGGCAA------------------------------------------
droTak1 scf7180000415801:155536-155680 + ACAAGTA----CG-GCGCTTCTGTTCCTGCTTACCGTTGGTGAGTAGAATGTATTGTAGTTTGAGGACCTTAGTCCGGCCACGATATTGCCCGAGGCAATCCATGGCTCTTGAACCAAAGCTATGTCGACGGGCCCTTGC-TCTAGGGCAA------------------------------------------
droEug1 scf7180000409683:73119-73184 - ATATAGG----CA-ATCC----------------------CCTCTAGTAAAGGCTAAAATTACTAAACTGTTAAA-------------------------------------------------------------------------AAA-------------------AAGCGGGGTAAAATT--------
dm3 chrU:6146246-6146312 + ACTGAAG----CT-AACG-ACTATCCCAATGTACCACAGAT-------------------------------------------------------------------------TCAATATTT---------------------------------------AGTCGATATACTTAAACGGGAAA--------
droSim2 node_116076:1-95 - ACAAGTA----CG-GCGGCTCTGTTTCTGCTTACCGATGGTGTATAGAACAGGTTGTAAATGGAGGACTTTAGTCCAGCGACGGGATTGCCCGAGACAAT---------------------------------------------------------------------------------------------
droSec2 scaffold_2166:1847-1913 + ACTAAAG----CA-AATG-ACTATCCCAATGTACCACAAATACAATATTT----------------------------------------------------------------------------------------------------------------AGGCGATAAACTAAATTGGGAAG--------
droYak3 v2_chr2h_random_004:230647-230791 + AAAAGTA----CG-GCGGCTCTGTTTCTGCTTACCGATGGTGTATAGAACAGGTTGTAATTTGAGGACTTTAGTCCGGCGACGGCATTGCCCGAGGCAATCCATGGCTCTTGGACCAAAGCTATGTCGGCGGACCCTTGC-TCCAGGGCGA------------------------------------------
droEre2 scaffold_2852:344-416 - TTTTGAA----TA-AAAGCTACGTA----------------------------------------------------------------------------------------------------CCGACTATCATGCAC-CCCAAATCAA-----AT-TTTTGATGATAAGATGAAAAGAGAAT--------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACGAGTA----CG-GCGGTTCTGTTCCTGCTTACCGATGTTGAGTAGAGAAAGTTGTAATTTGAGGACTTTAGCCCGGCCACGGAGTTGCCTGACGCAATTCACGGCTCCTGGACTAAAGCTATGTCGGCGATCCC-----TCCATGGCAAGTTCAATATTTAGTCGAGAAATTGCAACGTGAAT--------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................TCCTGGACTAAAGCTATGTCGGC...............................................................231782.2413982437201150137111990
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCG..............................................................241755.88950055620105340460
...........................................................................................................TCCTGGACTAAAGCTATGTCGG................................................................221729.65504036220521577410
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGC...............................................................241715.35261090120503137131
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCG..............................................................251710.06171095000007420
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGA.............................................................2528.50170800001800
.....................................TGTTGAGTAGAGAAAGTTGTAATT....................................................................................................................................2458.404202000008860
.............................................................TGAGGACTTTAGCCCGGCCACGGAGT..........................................................................................................2645.752306000001430
..........................................................................................................CTCCTGGACTAAAGCTATGTCGG................................................................23175.7197074100031900
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGT.............................................................25175.2990021000016440
...........................................................................................................TCCTGGACTAAAGCTATGTCG.................................................................21175.2489072001001330
............................................................................................................CCTGGACTAAAGCTATGTCGGCG..............................................................23173.065205200000000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCGA.............................................................2623.0060300000300
.............................................................TGAGGACTTTAGCCCGGCCACGGAG...........................................................................................................2542.75110300000800
...........................................................................................................TCCTGGACTAAAGCTATGTC..................................................................20202.004002200615150
............................................................................................................CCTGGACTAAAGCTATGTCGGC...............................................................22172.003402800100410
............................................................................................................CCTGGACTAAAGCTATGTCGG................................................................21171.763003000000000
ACGAGTA----CG-GCGGTTCTGTTCCTGC...................................................................................................................................................................25201.553103100000000
...................TCTGTTCCTGCTTACCGATGTTGAGT....................................................................................................................................................26201.452902900000000
.....................................................................TTAGCCCGGCCACGGAGTTGCCTGACG.................................................................................................2741.2550500000000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCGT.............................................................26171.242103110001510
..........................................................................................................CTCCTGGACTAAAGCTATGTCG.................................................................22171.121901500000310
...................TCTGTTCCTGCTTACCGATGTTGAG.....................................................................................................................................................25201.102202200000000
.............................................................TGAGGACTTTAGCCCGGCCACGGA............................................................................................................2441.0040100000300
.............................................................................................................CTGGACTAAAGCTATGTCGGC...............................................................21170.94160600000460
............................................................TTGAGGACTTTAGCCCGGCCACGG.............................................................................................................2440.7530000000300
.............................................................TGAGGACTTTAGCCCGGCCACGG.............................................................................................................2340.7530300000000
...................TCTGTTCCTGCTTACCGATGTTGA......................................................................................................................................................24200.701401400000000
...................TCTGTTCCTGCTTACCGATGTTG.......................................................................................................................................................23200.601201200000000
......................................GTTGAGTAGAGAAAGTTGTAATT....................................................................................................................................2350.6030300000000
.....................................TGTTGAGTAGAGAAAGTTGTAAT.....................................................................................................................................2350.6030300000000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGC.............................................................25170.59100800000200
ACGAGTA----CG-GCGGTTCTGTTCCT.....................................................................................................................................................................23200.501001000000000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGATC...........................................................2720.5010100000000
.....................................................................TTAGCCCGGCCACGGAGTTGCCTGAC..................................................................................................2640.5020200000000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGATCCC-----....................................................2920.5010100000000
......................................................................TAGCCCGGCCACGGAGTTGCCTGACG.................................................................................................2660.5030300000000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGAT............................................................2620.5010100000000
.............................................................................................................CTGGACTAAAGCTATGTCGGCG..............................................................22170.4170600000100
...............................TACCGATGTTGAGTAGAGAAAGTTG.........................................................................................................................................2550.4020200000000
ACGAGTA----CG-GCGGTTCTGTTCC......................................................................................................................................................................22200.4080800000000
............................................................................................................CCTGGACTAAAGCTATGTCG.................................................................20170.3560500000010
...........................................................................................................TCCTGGACTAAAGCTATGT...................................................................19200.3060400000110
...............................TACCGATGTTGAGTAGAGAA..............................................................................................................................................20200.3060200000310
...........................................................................................................TCCTGGACTAAAGCTATGTCGGT...............................................................23170.2950500000000
.....................................................................TTAGCCCGGCCACGGAGTTGCCTGACGC................................................................................................2840.2510100000000
..............................................................GAGGACTTTAGCCCGGCCACGGAGT..........................................................................................................2540.2510000000010
....................................................................TTTAGCCCGGCCACGGAG...........................................................................................................1840.2510100000000
.....................................................................TTAGCCCGGCCACGGAGTTGC.......................................................................................................2140.2510100000000
.................................................................GACTTTAGCCCGGCCACGG.............................................................................................................1940.2510100000000
....................................................................TTTAGCCCGGCCACGGAGTTGCCTGAC..................................................................................................2740.2510100000000
..........................................................................................................CTCCTGGACTAAAGCTATGTC..................................................................21200.2550200201000
.....TA----CG-GCGGTTCTGTTCCTG....................................................................................................................................................................19200.2550500000000
.............................................................TGAGGACTTTAGCCCGGCCACGGAA...........................................................................................................2540.2510000000100
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCGC.............................................................26170.2440000000400
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCA..............................................................25170.2440100000300
........................................................TAATTTGAGGACTTTAGCCCGGC..................................................................................................................2350.2010000000010
.......................................TTGAGTAGAGAAAGTTGTAATT....................................................................................................................................2250.2010100000000
.....................................TGTTGAGTAGAGAAAGTTGTAATTTG..................................................................................................................................2650.2010100000000
...............................TACCGATGTTGAGTAGAGAAAGT...........................................................................................................................................2350.2010100000000
.................................................AAAGTTGTAATTTGAGGACTTTAG........................................................................................................................2450.2010000000010
ACGAGTA----CG-GCGGTTCTGT.........................................................................................................................................................................19200.2040400000000
................................................................................................................................................................TTAGTCGAGAAATTGCAACGTGAAT--------25110.1820000000200
........................................................................................................GGCTCCTGGACTAAAGCTATGTCGG................................................................25170.1830100000200
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCA..............................................................24170.1830200000010
.........................................................................................................GCTCCTGGACTAAAGCTATGTCGGC...............................................................25170.1830300000000
..............................................................................................................TGGACTAAAGCTATGTCGGCG..............................................................21170.1830200000100
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGTAG...........................................................27180.1730000000300
......................................................................TAGCCCGGCCACGGAGTTGCCT.....................................................................................................2260.1710000100000
......................................................................TAGCCCGGCCACGGAGTTGCCTGACAA................................................................................................2760.1710100000000
......................................................................TAGCCCGGCCACGGAGTTGCCTGA...................................................................................................2460.1710100000000
......................................................................TAGCCCGGCCACGGAGTTGCCTGACGC................................................................................................2760.1710100000000
...................TCTGTTCCTGCTTACCGATGTTGAGTA...................................................................................................................................................27200.1530300000000
.CGAGTA----CG-GCGGTTCTGTTCCTGC...................................................................................................................................................................24200.1530300000000
...................TCTGTTCCTGCTTACCGATGTT........................................................................................................................................................22200.1530300000000
..GAGTA----CG-GCGGTTCTGTTCCTG....................................................................................................................................................................22200.1530300000000
.....TA----CG-GCGGTTCTGTTCCTGC...................................................................................................................................................................20200.1530300000000
.....TA----CG-GCGGTTCTGTTCCTGCTTACCGA............................................................................................................................................................27200.1530300000000
.....................TGTTCCTGCTTACCGATGTTGAGTAGA.................................................................................................................................................27200.1530300000000
..................TTCTGTTCCTGCTTACCGATGTTG.......................................................................................................................................................24200.1530300000000
......................................................................TAGCCCGGCCACGGAGTTGCCTGACGTT...............................................................................................2870.1410100000000
.......................................................................................................CGGCTCCTGGACTAAAGCTATGTCG.................................................................25160.1320200000000
............................................................................................................CCTGGACTAAAGCTATGTCGGCGC.............................................................24170.1220200000000
.........................................................................................................GCTCCTGGACTAAAGCTATGTCGG................................................................24170.1220200000000
........................................................................................................GGCTCCTGGACTAAAGCTATGTCGGC...............................................................26170.1220200000000
.............................................................................................................CTGGACTAAAGCTATGTCGG................................................................20170.1220200000000
............................................................................................................CCTGGACTAAAGCTATGTCGGCGT.............................................................24170.1220200000000
.....................................................................................................CACGGCTCCTGGACTAAAGCTATG....................................................................24180.1120200000000
...............................................................................CACGGAGTTGCCTGACGC................................................................................................1890.1110000000001
ACGAGTA----CG-GCGGTTCTGTTA.......................................................................................................................................................................21200.1020200000000
.....TA----CG-GCGGTTCTGTTCCTGCT..................................................................................................................................................................21200.1020200000000
..................TTCTGTTCCTGCTTACCGATGT.........................................................................................................................................................22200.1020200000000
ACGAGTA----CG-GCGGTTCTGTTCCTGCT..................................................................................................................................................................26200.1020200000000
.CGAGTA----CG-GCGGTTCTGTTCCTG....................................................................................................................................................................23200.1020200000000
.......................................................................................................CGGCTCCTGGACTAAAGCTATGTCGG................................................................26160.0610100000000
.....................................................................................................CACGGCTCCTGGACTAAAGCTATGTCGG................................................................28160.0610100000000
......................................................................................................ACGGCTCCTGGACTAAAGCTATGTCGG................................................................27160.0610100000000
................................................................................................................GACTAAAGCTATGTCGGC...............................................................18170.0610100000000
.............................................................................................................CTGGACTAAAGCTATGTCGGCGT.............................................................23170.0610100000000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGTC............................................................26170.0610100000000
.............................................................................................................................................................TATTTAGTCGAGAAATTGCAACG.............23170.0610000000100
..............................................................................................................TGGACTAAAGCTATGTCGGCT..............................................................21170.0610100000000
.............................................................................................................CTGGACTAAAGCTATGTCG.................................................................19170.0610100000000
.................................................................................................................ACTAAAGCTATGTCGGCG..............................................................18170.0610100000000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCAC.............................................................25170.0610100000000
.........................................................................................................GCTCCTGGACTAAAGCTATGTCGGCG..............................................................26170.0610100000000
..............................................................................................................TGGACTAAAGCTATGTCGG................................................................19170.0610100000000
..............................................................................................................TGGACTAAAGCTATGTCGGC...............................................................20170.0610000000100
...........................................................................................................TCCTGGACTAAAGCTATGTCGGA...............................................................23170.0610100000000
...............................................................................................................GGACTAAAGCTATGTCGG................................................................18170.0610100000000
...........................................................................................................TCCTGGACTAAAGCTATGTCGATA..............................................................24180.0610100000000
.........................................................................................................................................................TCAATATTTAGTCGAG........................16180.0610000000100
...........................................................................................................TCCTGGACTAAAGCTATGTCGA................................................................22180.0610100000000
....................................................................................................................................................CAAGTTCAATATTTAGTCG..........................19190.0510000000010
..GAGTA----CG-GCGGTTCTGTTCCTGC...................................................................................................................................................................23200.0510100000000
.CGAGTA----CG-GCGGTTCTGTTC.......................................................................................................................................................................20200.0510100000000
.....................TGTTCCTGCTTACCGATGTTGAG.....................................................................................................................................................23200.0510100000000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGT................................................................23200.0510100000000
..GAGTA----CG-GCGGTTCTGTTC.......................................................................................................................................................................19200.0510100000000
............................GCTTACCGATGTTGAGTAGAG................................................................................................................................................21200.0510100000000
.......................TTCCTGCTTACCGATGTTGAGTA...................................................................................................................................................23200.0510100000000
....................CTGTTCCTGCTTACCGATGTTGAGTA...................................................................................................................................................26200.0510100000000
.....TA----CG-GCGGTTCTGTTCCTGCTTACC..............................................................................................................................................................25200.0510100000000
............................................................................................................CCTGGACTAAAGCTATGTC..................................................................19200.0510100000000
................GGTTCTGTTCCTGCTTACCGA............................................................................................................................................................21200.0510100000000
.CGAGTA----CG-GCGGTTCTGTAAA......................................................................................................................................................................21200.0510100000000
.....................................................................................................CACGGCTCCTGGACTAAAGA........................................................................20200.0510100000000
......A----CG-GCGGTTCTGTTCCTG....................................................................................................................................................................18200.0510100000000
.....TA----CG-GCGGTTCTGTTCCTGCTT.................................................................................................................................................................22200.0510100000000
.CGAGTA----CG-GCGGTTCTGTTCCTGCT..................................................................................................................................................................25200.0510100000000
..............GCGGTTCTGTTCCTGCTTACCGATGT.........................................................................................................................................................26200.0510100000000
......A----CG-GCGGTTCTGTTCCTGCTA.................................................................................................................................................................21200.0510100000000
.CGAGTA----CG-GCGGTTCTGTT........................................................................................................................................................................19200.0510100000000
..................TTCTGTTCCTGCTTACCGATGTT........................................................................................................................................................23200.0510000000100
......................................................TGTAATTTGAGGACTTTAG........................................................................................................................19200.0510000000010
...........................................................................................................TCCTGGACTAAAGCTATG....................................................................18200.0510100000000
ACGAGTA----CG-GCGGTTCTGTA........................................................................................................................................................................20200.0510100000000
..........................................................................................................CTCCTGGACTAAAGCTATG....................................................................19200.0510100000000
.............................CTTACCGATGTTGAGTAGAGAA..............................................................................................................................................22200.0510100000000
........................TCCTGCTTACCGATGTTGAGTAG..................................................................................................................................................23200.0510100000000
.....................TGTTCCTGCTTACCGATGTTGAGTAG..................................................................................................................................................26200.0510010000000
......A----CG-GCGGTTCTGTTCCTGCT..................................................................................................................................................................20200.0510100000000
..................TTCTGTTCCTGCTTACCGATG..........................................................................................................................................................21200.0510100000000
.....TA----CG-GCGGTTCTGTTCCTGCTTACCG.............................................................................................................................................................26200.0510100000000
ACGAGTA----CG-GCGGTTCTG..........................................................................................................................................................................18200.0510100000000
........................TCCTGCTTACCGATGTTGAGTAGAGA...............................................................................................................................................26200.0510100000000
.................GTTCTGTTCCTGCTTACCGATGT.........................................................................................................................................................23200.0510100000000
droPer2
ACGAGTA----CG-GCGGTTCTGTTCCTGCTTACCGATGTTGAGTAGAGAAGGTTGTAATTTGAGGACTCTAGCCCGGCCACGGAGTTGCCTGACGCAATCCACGGCTCCTGGACTAAAGCTATGTCGGCGGGCCCTTGC-TCCATGGTAA------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................TGGACTAAAGCTATGTCGGCGG.............................................................22205.001000917002
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCG..............................................................24203.60720720000
..............................................................................................................TGGACTAAAGCTATGTCGGCGGG............................................................23203.30660631002
...........................................................................................................TCCTGGACTAAAGCTATGTCGGC...............................................................23202.354719262000
..............................................................................................................TGGACTAAAGCTATGTCGGC...............................................................20202.10420400002
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGGG............................................................26201.70345290000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCG..............................................................25201.45290290000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGG.............................................................25201.40283250000
.......................TTCCTGCTTACCGATGTTGAGTAGAG................................................................................................................................................26201.25250250000
.......................TTCCTGCTTACCGATGTTGAGTA...................................................................................................................................................23201.10220220000
...........................................................................................................TCCTGGACTAAAGCTATGTCGG................................................................22201.05210201000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGC...............................................................24201.00204160000
........................................................TAATTTGAGGACTCTAGCCCGG...................................................................................................................2211.001010000
..............................................................................................................TGGACTAAAGCTATGTCGGCG..............................................................21200.95190172000
...............................................................................................................GGACTAAAGCTATGTCGGCGG.............................................................21200.65130130000
...................TCTGTTCCTGCTTACCGATGTTGAG.....................................................................................................................................................25200.50101000000
.......................TTCCTGCTTACCGATGTTGAGT....................................................................................................................................................22200.459090000
..............................................................................................................TGGACTAAAGCTATGTCGGCGGGC...........................................................24200.408080000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGG................................................................23200.357070000
...............................................................................................................GGACTAAAGCTATGTCGGCGGG............................................................22200.357070000
............................................................................................................CCTGGACTAAAGCTATGTCGGCG..............................................................23200.306060000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCGG.............................................................26200.255050000
.............................................................................................................CTGGACTAAAGCTATGTCGGCGGG............................................................24200.255050000
..........................................................................................................CTCCTGGACTAAAGCTATGTCGGCGGG............................................................27200.255140000
............................................................................................................CCTGGACTAAAGCTATGTCGGCGG.............................................................24200.255050000
...............................................................................................................GGACTAAAGCTATGTCGG................................................................18200.204040000
...................TCTGTTCCTGCTTACCGATGTTG.......................................................................................................................................................23200.204040000
...............................................................................................................GGACTAAAGCTATGTCGGCG..............................................................20200.204040000
..............................................................................................................TGGACTAAAGCTATGTCGGCGGGCCC.........................................................26200.204030001
..................TTCTGTTCCTGCTTACCGATGTTGA......................................................................................................................................................25200.204040000
......................................GTTGAGTAGAGAAGGTTGTAATT....................................................................................................................................23100.202010001
.......................................................................................TGCCTGACGCAATCCACGGCTCCTG.................................................................................25200.153030000
............................................................................................................CCTGGACTAAAGCTATGTCGG................................................................21200.153030000
...................TCTGTTCCTGCTTACCGATGTTGAGTA...................................................................................................................................................27200.153300000
...........................................................................................................TCCTGGACTAAAGCTATGTCG.................................................................21200.153030000
..............................................................................................................TGGACTAAAGCTATGTCGGCGT.............................................................22200.153030000
...................TCTGTTCCTGCTTACCGATGTTGA......................................................................................................................................................24200.153030000
.....TA----CG-GCGGTTCTGTTCCTGCTTACCGA............................................................................................................................................................27200.153030000
.....................TGTTCCTGCTTACCGATGTTGAG.....................................................................................................................................................23200.102020000
.......................TTCCTGCTTACCGATGTTGAG.....................................................................................................................................................21200.102020000
...........................................................................................................TCCTGGACTAAAGCTATGTC..................................................................20200.102011000
.......................................................................................TGCCTGACGCAATCCACGGCTCCTGGAC..............................................................................28200.102020000
......................GTTCCTGCTTACCGATGTTGAGTAGA.................................................................................................................................................26200.102020000
........................TCCTGCTTACCGATGTTGAGTA...................................................................................................................................................22200.102020000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGGGC...........................................................27200.102020000
...........................TGCTTACCGATGTTGAGTAGAGA...............................................................................................................................................23200.102020000
...............................................................................................................GGACTAAAGCTATGTCGGC...............................................................19200.102020000
............................................................................................................CCTGGACTAAAGCTATGTCGGC...............................................................22200.102020000
.............................................................................................................CTGGACTAAAGCTATGTCGGCGG.............................................................23200.102020000
...............................................................................................................GGACTAAAGCTATGTCGGCGGGCC..........................................................24200.102020000
.CGAGTA----CG-GCGGTTCTGTT........................................................................................................................................................................19200.102020000
..............................................................................................................TGGACTAAAGCTATGTCGGCGGGCC..........................................................25200.102020000
...................................................................................................TCCACGGCTCCTGGACTAAAGC........................................................................22200.051010000
........................................................................................GCCTGACGCAATCCACGGCTCCT..................................................................................23200.051010000
................................................................................................CAATCCACGGCTCCTGGACTAAAGCTA......................................................................27200.051010000
......................GTTCCTGCTTACCGATGTTGAGT....................................................................................................................................................23200.051010000
.......................................................................................TGCCTGACGCAATCCACGGCTC....................................................................................22200.051010000
..............................................................................................................TGGACTAAAGCTATGTCGGCGGGCCCT........................................................27200.051010000
...................................................................................................TCCACGGCTCCTGGACTAAAGCTATGTC..................................................................28200.051010000
....................................................................................AGTTGCCTGACGCAATCCACGGCT.....................................................................................24200.051010000
................................................................................................CAATCCACGGCTCCTGGACTAAAG.........................................................................24200.051010000
..............................................................................................CGCAATCCACGGCTCCTGGACT.............................................................................22200.051010000
.........................................................................................................GCTCCTGGACTAAAGCTAT.....................................................................19200.051010000
.............................................................................................................CTGGACTAAAGCTATGTCGGCGGGC...........................................................25200.051010000
........................................................................................GCCTGACGCAATCCACGGCTCCTG.................................................................................24200.051010000
ACGAGTA----CG-GCGGTTCTG..........................................................................................................................................................................18200.051010000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGGC............................................................26200.051100000
ACGAGTA----CG-GCGGTTCTGTTC.......................................................................................................................................................................21200.051010000
..........................................................................................................CTCCTGGACTAAAGCTATGTCG.................................................................22200.051010000
...........................................................................................TGACGCAATCCACGGCTCCTG.................................................................................21200.051010000
....................................................................................AGTTGCCTGACGCAATCCACGG.......................................................................................22200.051010000
.............................................................................................................CTGGACTAAAGCTATGTCGGCG..............................................................22200.051010000
............................................................................................GACGCAATCCACGGCTCCTGGACT.............................................................................24200.051010000
......................................................................................TTGCCTGACGCAATCCACGGCTCC...................................................................................24200.051010000
.......................................................................................TGCCTGACGCAATCCACGGCTCC...................................................................................23200.051010000
.........................CCTGCTTACCGATGTTGAGTAGAG................................................................................................................................................24200.051010000
.............................................................................................................CTGGACTAAAGCTATGTCGGC...............................................................21200.051010000
..............................................................................................................TGGACTAAAGCTATGTCGGCGGC............................................................23200.051001000
....................CTGTTCCTGCTTACCGATGTTGAGTA...................................................................................................................................................26200.051010000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGCC............................................................26200.051100000
...................................................................................................................TAAAGCTATGTCGGCGGGCCCTTG......................................................24200.051010000
...........................................................................................................TCCTGGACTAAAGCTATGTCGA................................................................22200.051010000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCGC.............................................................25200.051010000
........................................................................................GCCTGACGCAATCCACGGCTCCTGG................................................................................25200.051010000
.......................................................................................TGCCTGACGCAATCCACGGCT.....................................................................................21200.051010000
.........................................................................................................GCTCCTGGACTAAAGCTATGTCGGCG..............................................................26200.051010000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCTT.............................................................25200.051100000
...........................................................................................................TCCTGGACTAAAGCTATGTCGGCC..............................................................24200.051100000
.....................TGTTCCTGCTTACCGATGTTGA......................................................................................................................................................22200.051010000
.......................................................................................................CGGCTCCTGGACTAAAGCTATGT...................................................................23200.051010000
................................................................................................................GACTAAAGCTATGTCGGCGG.............................................................20200.051010000
...............................TACCGATGTTGAGTAGAGAAG.............................................................................................................................................21200.051010000
droWil2
ACCATGA----CG-GCCGTTCTGGTTCTTCTTACTGTGGTGTGGTATAAGAGATAAA----AGATGATCTCAGCCCGGAAACCGTGTTGCCTGA---------CGGTTTCTGGACTAGAGCGACGTCG-----------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
CTGA-CGCAGCTCAAACTTCCTATC------------------------------------------------------------------------------------------AAAGCCCATAACGGCTATCTCATAT-TTAA-AACAGGAACCAT----AGACATTCCGACAGATTACGAATTCCACTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................TTCCGACAGATTACGAATTCCACTGT26200.5511000000000000000000000000000600005000000000000000000000000000000
.......................................................................................................................................................................TTCCGACAGATTACGAATTCCACT..24200.408008000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................GACATTCCGACAGATTACGAATTCCA....26200.153000000000000000000000000030000000000000000000000000000000000000
.......................................................................................................................................................................TTCCGACAGATTACGAATTC......20200.102000000000000000000000000020000000000000000000000000000000000000
.................................................................................................................................CTATCTCATAT-TTAA-AACAGGA........................................22200.102000000000000000000000000001010000000000000000000000000000000000
.................................................................................................................................CTATCTCATAT-TTAA-AACAGGAACCAT----...............................27200.102000000000000000000000000000101000000000000000000000000000000000
........................................................................................................................................................................TCCGACAGATTACGAATTCCACTG.24200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TATCTCATAT-TTAA-AACAGGAACCA....................................25200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................ATAT-TTAA-AACAGGAACCAT----AGACA..........................25200.051000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................TTCCGACAGATTACGAATTCCAC...23200.051000000000000000000000000010000000000000000000000000000000000000
............................................................................................................................................................................ACAGATTACGAATTCCACTGT21200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AATATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------AATAGACAAATTAAATCGCCAAA--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GTGGATG----CA-GGTGCG-TTTTTTTACCTTCATTGCCAGCTACTAACAGCTCGTAATTTTTGTTGCCTAGTCCGCAAACT---TTTCCTCCAACCACCCAAGGTTCTTGGACTAGTACTATGTCGTCT-----CCGCCTCCAGGCAGG------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................TACCTTCATTGCCAGCTACTAAC...............................................................................................................................................2330.33110
...........................TACCTTCATTGCCAGCTACTAACAG.............................................................................................................................................2530.33110
droAna3
GCGAGTA----TG-CATGCTCGCTTTTTACCTGTTACATCGGCTGTGTACAGCCGGAAGTCCCACGCCCCCAGACCGAGAATC---CTGTCTCCGTGGATCCAGGGTTCTTGGATGAGGGCCACGTCAGCTCC-----AT-TCTCTGCAAG-ATGGAGAATT---------------------AG--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................TTACCTGTTACATCGGCTGTGTACAG.............................................................................................................................................26205.6511311300000
...........................................................................................................TCTTGGATGAGGGCCACGTCAGC...............................................................23204.05810810000
...................................................................................................TCCAGGGTTCTTGGATGAGGGC........................................................................22202.755514410000
.................................................................................TC---CTGTCTCCGTGGATCCAGGGTTCTTG.................................................................................28202.10424200000
...........................................................................................TCCGTGGATCCAGGGTTCTTGGATG.............................................................................25201.15232300000
....................................................CCGGAAGTCCCACGCCCCCAGAC......................................................................................................................2311.001100000
...........................................................................................TCCGTGGATCCAGGGTTCTTGGA...............................................................................23200.75151500000
........................TTTTACCTGTTACATCGGCTGTGTACA..............................................................................................................................................27200.60121200000
...............................................................................................TGGATCCAGGGTTCTTGGATGAGGGC........................................................................26200.55111100000
.........................................................................................................................CACGTCAGCTCC-----AT-TCTCTGCAAG-ATG......................................27150.406600000
..........................................................................................................TTCTTGGATGAGGGCCACGTCAGC...............................................................24200.408800000
...................................................................................................TCCAGGGTTCTTGGATGAGGGCCACG....................................................................26200.357700000
......................................................................CAGACCGAGAATC---CTGTCTCCGTGGATC............................................................................................28200.357700000
.........................................................................................................................CACGTCAGCTCC-----AT-TCTCTGCAAG-A........................................25150.335410000
............................................................................GAGAATC---CTGTCTCCGTGGATCCAGGGT......................................................................................28200.255500000
...................................................................................................TCCAGGGTTCTTGGATGAGGGCCACGTC..................................................................28200.255500000
......................................................................CAGACCGAGAATC---CTGTCTCCG..................................................................................................22200.204040000
..........................................................................................CTCCGTGGATCCAGGGTTCTTGG................................................................................23200.204400000
...........................................................................................................TCTTGGATGAGGGCCACGTCAGCTCC-----AT-....................................................28200.204400000
............................ACCTGTTACATCGGCTGTGTACA..............................................................................................................................................23200.204400000
........................................................................GACCGAGAATC---CTGTCTCCGTGGATC............................................................................................26200.153030000
..............................................................................GAATC---CTGTCTCCGTGGATCCAGGG.......................................................................................25200.153300000
...........................................................................................TCCGTGGATCCAGGGTTCTTGGATGAGG..........................................................................28200.153300000
.........................TTTACCTGTTACATCGGCTGTGTACAGCC...........................................................................................................................................29200.153300000
.......................................................................................................GGGTTCTTGGATGAGGGCC.......................................................................19200.153000003
.............................................................................................................TTGGATGAGGGCCACGTCAGC...............................................................21200.153003000
...........................................................................CGAGAATC---CTGTCTCCGTGGATCCAGG........................................................................................27200.153300000
...................................................................................................TCCAGGGTTCTTGGATGAGGG.........................................................................21200.153003000
.........................................................................................................................CACGTCAGCTCC-----AT-TCTCTGCAAG-.........................................24160.132200000
...........................................................................................TCCGTGGATCCAGGGTTCTTGT................................................................................22200.102002000
..........................TTACCTGTTACATCGGCTG....................................................................................................................................................19200.102200000
......................................................................................CTGTCTCCGTGGATCCAGGGTTCTT..................................................................................25200.102101000
......................................................................................CTGTCTCCGTGGATCCAGGGTTCTTGGA...............................................................................28200.102200000
...........................................................................................................TCTTGGATGAGGGCCACGTCAGCTCC-----.......................................................26200.102002000
.....................................................................................................CAGGGTTCTTGGATGAGGGCC.......................................................................21200.102000002
...................................................................................................................GAGGGCCACGTCAGCTCC-----AT-TCTCTGCA............................................28130.081100000
.............................................................................................................TTGGATGAGGGCCACGTCAGCTCC-----AT-T...................................................27140.071100000
...................................................................................................................GAGGGCCACGTCAGCTCC-----AT-TCTCTG..............................................26140.071100000
..........................................................................................................................ACGTCAGCTCC-----AT-TCTCTGCAAG-ATG......................................26150.071100000
..........................................................................................................................ACGTCAGCTCC-----AT-TCTCTGCAAG-ATGG.....................................27150.071100000
.........................................................................................................................CACGTCAGCTCC-----AT-TCTCTGCAAG-AT.......................................26150.071100000
.........................................................................................................................CACGTCAGCTCC-----AT-TCTCTGCAAG-ATC......................................27150.071010000
........................................................................................................................CCACGTCAGCTCC-----AT-TCTCTG..............................................21170.061100000
................................................................................................GGATCCAGGGTTCTTGGATGAGGG.........................................................................24200.051100000
................TGCTCGCTTTTTACCTGTTACATCGG.......................................................................................................................................................26200.051010000
.........................................................................................TCTCCGTGGATCCAGGGTTCTTGGATG.............................................................................27200.051100000
................................................................................ATC---CTGTCTCCGTGGATCCAGGGTTCTT..................................................................................28200.051100000
........................................................................GACCGAGAATC---CTGTCTCCGTGGATCCA..........................................................................................28200.051100000
...............................................................................AATC---CTGTCTCCGTGGATCCAGGG.......................................................................................24200.051100000
..............................................................................................................TGGATGAGGGCCACGTCAGC...............................................................20200.051010000
.......................TTTTTACCTGTTACATCGGCTGTGT.................................................................................................................................................25200.051100000
...................TCGCTTTTTACCTGTTACATCGGCTG....................................................................................................................................................26200.051010000
..............................................................................................................TGGATGAGGGCCACGTCAGCTCC-----.......................................................23200.051100000
..........................TTACCTGTTACATCGGCT.....................................................................................................................................................18200.051100000
...........................................................................................TCCGTGGATCCAGGGTTCTTGGATT.............................................................................25200.051010000
...................................................................................................TCCAGGGTTCTTGGATGAGGGCCACGC...................................................................27200.051010000
.....................................................................................................CAGGGTTCTTGGATGAGGGC........................................................................20200.051010000
......................................................................CAGACCGAGAATC---CTGTCTCCGTG................................................................................................24200.051010000
......................................................................................CTGTCTCCGTGGATCCAGGGTTCT...................................................................................24200.051100000
.................................................................................TC---CTGTCTCCGTGGATCCAGGGTTC....................................................................................25200.051100000
........................................................................GACCGAGAATC---CTGTCTCCGTGGAT.............................................................................................25200.051001000
..............................................................................GAATC---CTGTCTCCGTGGATCCAG.........................................................................................23200.051100000
.............................................................................................CGTGGATCCAGGGTTCTTGG................................................................................20200.051100000
............................ACCTGTTACATCGGCTGTGTACAGC............................................................................................................................................25200.051010000
.................GCTCGCTTTTTACCTGTTACATCG........................................................................................................................................................24200.051100000
..................CTCGCTTTTTACCTGTTACATCGGCTGTG..................................................................................................................................................29200.051100000
....................................................................CCCAGACCGAGAATC---CTGTCTCCGT.................................................................................................25200.051010000
............................................................................................................CTTGGATGAGGGCCACGT...................................................................18200.051100000
...........................................................................CGAGAATC---CTGTCTCCGTGGATCCA..........................................................................................25200.051100000
............................................................................................................CTTGGATGAGGGCCACGTCAGC...............................................................22200.051010000
........................................................................................GTCTCCGTGGATCCAGGGTTCTTGGATG.............................................................................28200.051100000
..............................................................................................................TGGATGAGGGCCACGTCAGCTC.............................................................22200.051100000
.............................................................................................................TTGGATGAGGGCCACGTCAGCTCC-----T......................................................25200.051100000
.................................................................................TC---CTGTCTCCGTGGATCCAGGGTT.....................................................................................24200.051100000
droBip1
GCGAGGA----TG-CAGGCTCGCCCTTTACCTGTTGTATCGGCTTTGCAGAGCCTATACTCTGACGCCCCTAACCGAAGAATC---CTGTCTCCAATGATCC---GTTCCTGGATGAAGGCCATATCAGC-----TCCAC-TCTCGGCGAG------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACAAGTA----CG-GCGGTTCTATTCCTGCTTACCGTTGGTGAATGGAGAAAATTGTAATTTGCGGACTTCAGTCCGGCGATGGCATTGCCTGAGGCGATCCATGGCTCCTGGACCAAAGCTATGTCGGCGGATCCTTGC-TCCATGGC--------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GT----------------TTCTGTTCCTGCTTACCGCTGCTGAAATGAAATTGTTGTAACTTGAGGTCTTCAGTCCGGCTGCGGCATTGTGCGGGGTGACCTATAGC--------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
ACTTGGA----TG-GCGGTCCTGTTCCTGCTTACCGGTGGTGAGTATAATGGGTTGTAATTTAGCGATTTTAGTTCGGCTACGGTGTGGCATGAGGCGATCCATGGCTCCTGGACCAGAGCTATGTCGACGGATCCCTGC-TCCAGGGCAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TAAAATG----CA---GGTTCGAATTTTACCTTGTTTCGGGTCAAGCATAAGCTTGTAATCTTTAGATCCTAGTCCAGCAACC---CTGCCTCCTGCTACCCAGGGTTCCTGAACTAAGACCACGTCGGC---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ACAAGTA----CG-GCGCTTCTGTTCCTACATACAGTTGGTGAGTATAATGTATTGTAGTTTGAAGACCTTAGACCGGCAACGATACTGC-CGAGGCAATTCATGGCTCTTGAACCAAGGCTATGTCGAAGGTTCCCTGC-TCCAAGGCAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACAAGTA----CG-GCGCTTCTGTTCCTGCTTACCGTTGGTGAGTAGAATGTATTGTAGTTTGAGGACCTTAGTCCGGCCACGATATTGCCCGAGGCAATCCATGGCTCTTGAACCAAAGCTATGTCGACGGGCCCTTGC-TCTAGGGCAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ATATAGG----CA-ATCC----------------------CCTCTAGTAAAGGCTAAAATTACTAAACTGTTAAA-------------------------------------------------------------------------AAA-------------------AAGCGGGGTAAAATT--------SizeHit CountTotal NormTotal
No Reads
dm3
ACTGAAG----CT-AACG-ACTATCCCAATGTACCACAGAT-------------------------------------------------------------------------TCAATATTT---------------------------------------AGTCGATATACTTAAACGGGAAA--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..TGAAG----CT-AACG-ACTATCCCAATGTAC...............................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............T-AACG-ACTATCCCAATGTACCACAGA.........................................................................................................................................................2640.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ACAAGTA----CG-GCGGCTCTGTTTCTGCTTACCGATGGTGTATAGAACAGGTTGTAAATGGAGGACTTTAGTCCAGCGACGGGATTGCCCGAGACAAT---------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
ACTAAAG----CA-AATG-ACTATCCCAATGTACCACAAATACAATATTT----------------------------------------------------------------------------------------------------------------AGGCGATAAACTAAATTGGGAAG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAAAGTA----CG-GCGGCTCTGTTTCTGCTTACCGATGGTGTATAGAACAGGTTGTAATTTGAGGACTTTAGTCCGGCGACGGCATTGCCCGAGGCAATCCATGGCTCTTGGACCAAAGCTATGTCGGCGGACCCTTGC-TCCAGGGCGA------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................TCTTGGACCAAAGCTATGTCGGCGG.............................................................25163.8862058300010000
...........................................................................................................................TGTCGGCGGACCCTTGC-TCCAGGGCGA------------------------------------------27122.0024000000000024
...........................................................................................................TCTTGGACCAAAGCTATGTCGGCGGA............................................................26161.4423017000020004
.......................................................................................TGCCCGAGGCAATCCATGGCTCTTGGA...............................................................................27101.3013000000000013
...........................................................................................................TCTTGGACCAAAGCTATGTCGGCG..............................................................24171.1219215010010000
.....................................................TTGTAATTTGAGGACTTTAGTCCGGC..................................................................................................................2611.00101000000000
......................................................TGTAATTTGAGGACTTTAGTCCGGC..................................................................................................................2511.00101000000000
...........................................................................................................TCTTGGACCAAAGCTATGTCGGC...............................................................23170.591003600010000
...........................................................................................................TCTTGGACCAAAGCTATGTCGGCGGAC...........................................................27160.38615000000000
............................................................................................................CTTGGACCAAAGCTATGTCGGCGG.............................................................24170.35606000000000
...........................................................................................................TCTTGGACCAAAGCTATGTCGGCGGACC..........................................................28160.31505000000000
...........................................................................................................TCTTGGACCAAAGCTATGTCGG................................................................22170.29503010010000
.........................................................................TCCGGCGACGGCATTGCCCGAGGCAATC............................................................................................2890.22202000000000
.......................................................................................................TGGCTCTTGGACCAAAGCTATGTCGGC...............................................................27140.21301200000000
.........................................................................................................................TATGTCGGCGGACCCTTGC-TCCAGGGCGA------------------------------------------29100.20200000000002
.....................................................................TTAGTCCGGCGACGGCATTGCCCGAGGC................................................................................................28110.18200000000002
...........................................................................................................................TGTCGGCGGACCCTTGC-TCCAGGGC............................................25120.17202000000000
.....TA----CG-GCGGCTCTGTTTCTGCTTACCGA............................................................................................................................................................2760.17101000000000
...................................................................................................TCCATGGCTCTTGGACCAAAGCT.......................................................................23140.14202000000000
....................................................................................................................AAAGCTATGTCGGCGGACCCTTGC-TC..................................................26140.14202000000000
...................................................................................................TCCATGGCTCTTGGACCAAAGCTAT.....................................................................25140.14202000000000
.....................TGTTTCTGCTTACCGATGGTGTA.....................................................................................................................................................2380.13101000000000
............................................................................................................CTTGGACCAAAGCTATGTCGGCGGA............................................................25170.12202000000000
..........................................................................CCGGCGACGGCATTGCCCGAGGCAATC............................................................................................2790.11101000000000
..............GCGGCTCTGTTTCTGCTTACCGATGG.........................................................................................................................................................2690.11101000000000
.......................................................................................TGCCCGAGGCAATCCATGGCTCTTGGACC.............................................................................29100.10100100000000
.........................................................................................................................TATGTCGGCGGACCCTTGC-TCCAGGG.............................................26100.10101000000000
.......................................................................................TGCCCGAGGCAATCCATGGCTCTTGGAC..............................................................................28100.10101000000000
.........................................................................................................................TATGTCGGCGGACCCTTGC-TCCAGGGT............................................27100.10101000000000
.........................................................................................................................TATGTCGGCGGACCCTTGC-TCCAGGGC............................................27100.10101000000000
..........................................................................CCGGCGACGGCATTGCCCGAGGCAA..............................................................................................25110.09101000000000
....................................................................TTTAGTCCGGCGACGGCATTGCCCGA...................................................................................................26110.09101000000000
.............................................................................................................................TCGGCGGACCCTTGC-TCCAGGGCGA------------------------------------------25120.08100000000001
.........................................................................TCCGGCGACGGCATTGCCCGAGG.................................................................................................23120.08100100000000
.........................................................................TCCGGCGACGGCATTGCCCGAGGC................................................................................................24120.08101000000000
............................................................................................GAGGCAATCCATGGCTCTTGGAC..............................................................................23130.08100100000000
...................TCTGTTTCTGCTTACCGATGGTGT......................................................................................................................................................24140.07101000000000
................................................................................................CAATCCATGGCTCTTGGACCAAAGC........................................................................25140.07101000000000
.......................................................................................................TGGCTCTTGGACCAAAGCTATGTCGGCG..............................................................28140.07101000000000
...................................................................................................TCCATGGCTCTTGGACCAAAGCTA......................................................................24140.07101000000000
...................................................................................................TCCATGGCTCTTGGACCAAAGCTATG....................................................................26140.07101000000000
...................TCTGTTTCTGCTTACCGATGG.........................................................................................................................................................21150.07101000000000
...........................................................................................................TCTTGGACCAAAGCTATGTCGGCGGAAA..........................................................28160.06101000000000
...........................................................................................................TCTTGGACCAAAGCTATGTCGGCGGT............................................................26170.06101000000000
............................................................................................................CTTGGACCAAAGCTATGTCGGCGGACC..........................................................27170.06101000000000
.........................................................................................................GCTCTTGGACCAAAGCTATGTCGGCG..............................................................26170.06101000000000
..........................................................................................................CTCTTGGACCAAAGCTATGTCGGCG..............................................................25170.06101000000000
............................................................................................................CTTGGACCAAAGCTATGTCGGC...............................................................22180.06100100000000
............................................................................................................CTTGGACCAAAGCTATGTCGGCGT.............................................................24180.06101000000000
............................................................................................................CTTGGACCAAAGCTATGTCGGCG..............................................................23180.06101000000000
.................................................................................................................ACCAAAGCTATGTCGGCGGACCCTT.......................................................25190.05101000000000
.............................................................................................................TTGGACCAAAGCTATGTCGGCGGACCC.........................................................27190.05101000000000
...................................................................................................................CAAAGCTATGTCGGCGGACCCTTGC-....................................................25190.05101000000000
.............................................................................................................TTGGACCAAAGCTATGTCGGCGG.............................................................23190.05101000000000
..............................................................................................................TGGACCAAAGCTATGTCGGCGGACCCT........................................................27190.05101000000000
.................................................................................................................ACCAAAGCTATGTCGGCGGACCCTTG......................................................26190.05101000000000
.......................................................................................................................GCTATGTCGGCGGACCCTTG......................................................20200.05101000000000
droEre2
TTTTGAA----TA-AAAGCTACGTA----------------------------------------------------------------------------------------------------CCGACTATCATGCAC-CCCAAATCAA-----AT-TTTTGATGATAAGATGAAAAGAGAAT--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/15/2015 at 02:36 PM