ID:

dps_1002

 Coordinate:

3:3941404-3941472 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.4 -6.5 -6.4

Flybase annnotation

exon [dpse_GLEANR_14708:1]; CDS [Dpse\GA24459-cds]; exon [dpse_GLEANR_14708:2]; CDS [Dpse\GA24459-cds]; intron [Dpse\GA24459-in]

No Repeatable elements found

mature
  1. dps_1002  3:3941413-3941435 -
  2. dps_2188  Unknown_group_675:13625-13647 +
  3. Unknown_singleton_371:1232-1254 +
star
  1. dps_1002  3:3941449-3941471 -
  2. dps_2188  Unknown_group_675:13589-13611 +
  3. Unknown_singleton_371:1188-1210 +

Sense Strand Reads

----------------------------######################---------------------------------------------------------------------##################################################
TGTCATCTATACTGGTGGCACCATTGGGATGACTCCCAACGACAATGGTGGTAAGAGGCCTCCAAGTGCATACGGATAGCTCCAGTTCAGTGTTGTGTTTTTGAATCTTTTAGTATTAGTGCCAGAACCGAAAGCTTTTGAAAGGTTCATCCGGAAGGATGTCAGTCTG
***************************************************...((((....((((.(((((((...(((....)))...))).)))).))))..)))).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 SRR902010
ovaries
 M059
embryo
 M062
head
 GSM444067
head
....................................................................................................................................................ATCCGGAAGGATGTCAGTCTG 21 0 3 5.33 16 16 0 0 0 0 0 0
...........................GATGACTCCCAACGACAATGGT........................................................................................................................ 22 0 3 5.33 16 16 0 0 0 0 0 0
............................................................................................................TGTAGTATTAGTGCCAGAACCGAAAGC.................................. 27 1 3 4.67 14 1 12 1 0 0 0 0
.........................................................................................................................................TTGAAAGGTTCATCCGGAAGG........... 21 0 3 3.67 11 11 0 0 0 0 0 0
............................ATGACTCCCAACGACAATGGT........................................................................................................................ 21 0 3 3.67 11 11 0 0 0 0 0 0
......................................................................................................................................CTTTTGAAAGGTTCATCCGGA.............. 21 0 3 3.33 10 10 0 0 0 0 0 0
...................................................................................................................TTAGTGCCAGAACCGAAAGCT................................. 21 0 3 3.33 10 10 0 0 0 0 0 0
.....................................................................................................................AGTGCCAGAACCGAAAGCTTT............................... 21 0 3 2.67 8 8 0 0 0 0 0 0
..TCATCTATACTGGTGGCACCA.................................................................................................................................................. 21 0 3 2.33 7 7 0 0 0 0 0 0
...........................GATGACTCCCAACGACAATGG......................................................................................................................... 21 0 3 2.33 7 7 0 0 0 0 0 0
.GTCATCTATACTGGTGGCACC................................................................................................................................................... 21 0 3 2.00 6 6 0 0 0 0 0 0
........................................................................................................................................TTTGAAAGGTTCATCCGGAAG............ 21 0 3 2.00 6 5 0 1 0 0 0 0
.....................................................................................................TGAATCTTGTAGTATTAGTGCCAGAAC......................................... 27 1 3 1.67 5 0 5 0 0 0 0 0
......................................................................................TCAGTGTTGTGTTTTTGAATCTTGT.......................................................... 25 1 3 1.67 5 0 5 0 0 0 0 0
...................................................................................................TTTGAATCTTGTAGTATTAGTGCCA............................................. 25 1 3 1.67 5 0 4 1 0 0 0 0
................................................................................................................GTATTAGTGCCAGAACCGA...................................... 19 0 3 1.67 5 5 0 0 0 0 0 0
............................................................................................................TGTAGTATTAGTGCCAGAACCGAAA.................................... 25 1 3 1.67 5 0 5 0 0 0 0 0
............................................................................................................TGTAGTATTAGTGCCAGAACCGAAAG................................... 26 1 3 1.33 4 0 4 0 0 0 0 0
.....................................................................................................................................................TCCGGAAGGATGTCAGTCTG 20 0 3 1.33 4 4 0 0 0 0 0 0
................................................................................................................GTATTAGTGCCAGAACCGAAA.................................... 21 0 3 1.33 4 4 0 0 0 0 0 0
.......................................................................................................................................TTTTGAAAGGTTCATCCGGAA............. 21 0 3 1.33 4 4 0 0 0 0 0 0
.....................................................................................TTCAGTGTTGTGTTTTTGAATCTTG........................................................... 25 1 3 1.33 4 0 4 0 0 0 0 0
......................................................................................TCAGTGTTGTGTTTTTGAATCTTGTAG........................................................ 27 1 3 1.33 4 0 4 0 0 0 0 0
....ATCTATACTGGTGGCACCATT................................................................................................................................................ 21 0 3 1.33 4 4 0 0 0 0 0 0
..............................................................................................................................................AGGTTCATCCGGAAGGATGTC...... 21 0 3 1.33 4 4 0 0 0 0 0 0
...CATCTATACTGGTGGCACCAT................................................................................................................................................. 21 0 3 1.33 4 4 0 0 0 0 0 0
....ATCTATACTGGTGGCACCATTGG.............................................................................................................................................. 23 0 3 1.33 4 4 0 0 0 0 0 0
....................................................................................................................................AGCTTTTGAAAGGTTCATCC................. 20 0 3 1.00 3 3 0 0 0 0 0 0
.........................................................................................................................................TTGAAAGGTTCATCCGGAAG............ 20 0 3 1.00 3 3 0 0 0 0 0 0
......CTATACTGGCGGCACCATTGG.............................................................................................................................................. 21 1 3 1.00 3 3 0 0 0 0 0 0
......................................................................................................................................CTTTTGAAAGGTTCATCCGGAAG............ 23 0 3 1.00 3 3 0 0 0 0 0 0
.......................................................................................................................................TTTTGAAAGGTTCATCCGGA.............. 20 0 3 1.00 3 3 0 0 0 0 0 0
.....TCTATACTGGTGGCACCATTG............................................................................................................................................... 21 0 3 1.00 3 3 0 0 0 0 0 0
...........................................................................................................................................GAAAGGTTCATCCGGAAGGAT......... 21 0 3 1.00 3 3 0 0 0 0 0 0
..TCATCTATACTGGTGGCACC................................................................................................................................................... 20 0 3 1.00 3 3 0 0 0 0 0 0
........................................GACAATGGTGGTAAGAGGCCT............................................................................................................ 21 0 3 1.00 3 2 0 1 0 0 0 0
..........................................................................................................................................TGAAAGGTTCATCCGGAAGGA.......... 21 0 3 1.00 3 3 0 0 0 0 0 0
..........................................................................................................................................TGAAAGGTTCATCCGGAAGG........... 20 0 3 1.00 3 3 0 0 0 0 0 0
...............................................................................................TGTTTTTGAATCTTGTAGTATTAG.................................................. 24 1 3 1.00 3 0 3 0 0 0 0 0
................................................................................................................GTATTAGTGCCAGAACCGAA..................................... 20 0 3 1.00 3 3 0 0 0 0 0 0
..............................GACTCCCAACGACAATGGT........................................................................................................................ 19 0 3 1.00 3 3 0 0 0 0 0 0
.........TACTGGTGGCACCATTGGGATG.......................................................................................................................................... 22 0 3 1.00 3 2 0 0 0 0 1 0
............................ATGACTCCCAACGACAATGG......................................................................................................................... 20 0 3 1.00 3 3 0 0 0 0 0 0
........ATACTGGTGGCACCATTGGGA............................................................................................................................................ 21 0 3 1.00 3 3 0 0 0 0 0 0
............................................................................................................TGTAGTATTAGTGCCAGAACCGAAGC................................... 26 3 3 1.00 3 0 3 0 0 0 0 0
......CTATACTGGTGGCACCATTGGGATGACT....................................................................................................................................... 28 0 3 0.67 2 2 0 0 0 0 0 0
.............................TGACTCCCAACGACAATGGTG....................................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0
................................................................................................................GTATTAGTGCCAGAACCGAAAGCTTTT.............................. 27 0 3 0.67 2 2 0 0 0 0 0 0
.....................................................................................................TGAATCTTGTAGTATTAGTGCCAGAA.......................................... 26 1 3 0.67 2 0 2 0 0 0 0 0
...................................................................................................TTTGAATCTTGTAGTATTAGTGC............................................... 23 1 3 0.67 2 0 2 0 0 0 0 0
............................ATGACTCCCAACGACAATGGTG....................................................................................................................... 22 0 3 0.67 2 2 0 0 0 0 0 0
.................................................................................................................TATTAGTGCCAGAACCGAAA.................................... 20 0 3 0.67 2 2 0 0 0 0 0 0
......CTATACTGGTGGCACCATTG............................................................................................................................................... 20 0 3 0.67 2 2 0 0 0 0 0 0
.....................................AACGACAATGGTGGTAAGAGG............................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0
.......................................................................................CAGTGTTGTGTTTTTGAATCTTT........................................................... 23 0 3 0.67 2 0 2 0 0 0 0 0
...................................................................................................................TTAGTGCCAGAACCGAAAGC.................................. 20 0 3 0.67 2 2 0 0 0 0 0 0
....ATCTATACTGGTGGCACCATTG............................................................................................................................................... 22 0 3 0.67 2 2 0 0 0 0 0 0
...................................................TAAGAGGCCTCCAAGTGCATACG............................................................................................... 23 0 3 0.67 2 0 2 0 0 0 0 0
......................ATTGGGATGACTCCCAACGACAATGGT........................................................................................................................ 27 0 3 0.67 2 2 0 0 0 0 0 0
........ATACTGGCGGCACCATTGGGA............................................................................................................................................ 21 1 3 0.67 2 1 0 1 0 0 0 0
.......................................................................................CAGTGTTGTGTTTTTGAATC.............................................................. 20 0 3 0.67 2 0 0 0 2 0 0 0
......................................ACGACAATGGTGGTAAGAGGC.............................................................................................................. 21 0 3 0.67 2 1 0 1 0 0 0 0
.......TATACTGGTGGCACCATTG............................................................................................................................................... 19 0 3 0.67 2 2 0 0 0 0 0 0
..........................GGATGACTCCCAACGACAATG.......................................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0
.......TATACTGGTGGCACCATTGG.............................................................................................................................................. 20 0 3 0.67 2 2 0 0 0 0 0 0
.........................GGGATGACTCCCAACGACAATGGT........................................................................................................................ 24 0 3 0.67 2 2 0 0 0 0 0 0
.............................................................................................................................................AAGGTTCATCCGGAAGGATGTC...... 22 0 3 0.67 2 0 0 2 0 0 0 0
......CTATACTGGTGGCACCATTGG.............................................................................................................................................. 21 0 3 0.67 2 2 0 0 0 0 0 0
...................................................TAAGAGGCCTCCAAGTGCATACGG.............................................................................................. 24 0 3 0.67 2 0 2 0 0 0 0 0
..................................................................................................TTTTGAATCTTGTAGTATTAGTGCCAG............................................ 27 1 3 0.67 2 0 2 0 0 0 0 0
................................................................................................................................................GTTCATCCGGAAGGATGTCAGTCTG 25 0 3 0.67 2 2 0 0 0 0 0 0
................................................TGGTAAGAGGCCTCCAAGTGCATACG............................................................................................... 26 0 3 0.67 2 0 2 0 0 0 0 0
....................................................................................................TTGAATCTTGTAGTATTAGTGCCAG............................................ 25 1 3 0.67 2 0 2 0 0 0 0 0
..............................................................................................................GTGTATTAGTGCCAGAACCGA...................................... 21 2 3 0.67 2 2 0 0 0 0 0 0
............................................................................................................................................AAAGGTTCATCCGGAAGGATG........ 21 0 3 0.67 2 2 0 0 0 0 0 0
.......................................CGACAATGGTGGTAAGAGGC.............................................................................................................. 20 0 3 0.67 2 2 0 0 0 0 0 0
....................................................................................................................................AGCTTTTGAAAGGTTCATC.................. 19 0 3 0.67 2 2 0 0 0 0 0 0
............TGGCGGCACCATTGGGATGACTCCCAACG................................................................................................................................ 29 1 3 0.67 2 0 2 0 0 0 0 0
.................................................................................................................TATTAGTGCCAGAACCGAAAG................................... 21 0 3 0.67 2 2 0 0 0 0 0 0
......................................................................................................................GTGCCAGAACCGAAAGCTTTT.............................. 21 0 3 0.67 2 2 0 0 0 0 0 0
.........................................ACAATGGTGGTAAGAGGCCTC........................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0 0
...............CGGCACCATTGGGATGACTCC..................................................................................................................................... 21 1 3 0.67 2 2 0 0 0 0 0 0
..................................................................................................TTTTGAATCTTGTAGTATTAGTGC............................................... 24 1 3 0.67 2 0 2 0 0 0 0 0
..............................................................CAAGTGCATACGGATAGCTCC...................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
..............................................................................GCTCCAGTTCAGTGTTGTGTT...................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
................................................................AGTGCATACGGATAGCTCCAG.................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
..........AACGGTGGCACCATTGGGCTG.......................................................................................................................................... 21 3 4 0.50 2 2 0 0 0 0 0 0
......................................................................................TCAGTGTTGTGTTTTTGAATC.............................................................. 21 0 3 0.33 1 0 0 1 0 0 0 0
.......................TTGGGATGACTCCCAACGACAATGGT........................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0 0 0
..............GTGGCACCATTGGGATGACT....................................................................................................................................... 20 0 3 0.33 1 0 0 1 0 0 0 0
.........TACTGGTGGCACCATTGGG............................................................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................................GCTTTTGAAAGGTTCATCCGG............... 21 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................TGAATCTTGTAGTATTAGTGCCAGAACC........................................ 28 1 3 0.33 1 0 1 0 0 0 0 0
.............................................................................................TGTGTTTTTGAATCTTGTAGT....................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
.............................TGACTCCCAACGACAATGG......................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
...........CTGGCGGCACCATTGGGATGA......................................................................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
.................................TCCCAACGACAATGGTGGTAAGAGG............................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................TGAATCTTGTAGTATTAGTGCCAGA........................................... 25 1 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................TAGTGCCAGAACCGAAAGC.................................. 19 0 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................TGCCAGAACCGAAAGCTTTTGAAAGGT....................... 27 0 3 0.33 1 0 1 0 0 0 0 0
..............................................................................................................................................AGGTTCATCCGGAAGGATG........ 19 0 3 0.33 1 1 0 0 0 0 0 0
..........................................CAATGGTGGTAAGAGGCCTCC.......................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................................................................CCGGAAGGATGTCAGTCT. 18 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................CCAGAACCGAAAGCTTTTGAA........................... 21 0 3 0.33 1 1 0 0 0 0 0 0
...CATCTATACTGGTGGCACCATTGGG............................................................................................................................................. 25 0 3 0.33 1 1 0 0 0 0 0 0
.............................TGACTCCCAACGACAATGGTGT...................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................TTCAGTGTTGTGTTTTTGAA................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
...CATCTATACTGGTGGCACCATTGG.............................................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0 0 0
..TCATGTATACTGGTGGCACCA.................................................................................................................................................. 21 1 3 0.33 1 0 0 0 0 1 0 0
.........................................................................................................................................TTGGAAGGTTCATCCGGAAGG........... 21 1 3 0.33 1 1 0 0 0 0 0 0
...........CTGGTGGCACCATTGGGATGACTCCC.................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................................AAGGTTCATCCGGAAGGATGTT...... 22 1 3 0.33 1 0 0 1 0 0 0 0
.......................................................................................................................TGCCAGAACCGAAAGCTTTTGAAAGG........................ 26 0 3 0.33 1 0 0 1 0 0 0 0
............................................................................................................TGTAGTATTAGTGCCAGAACCGA...................................... 23 1 3 0.33 1 1 0 0 0 0 0 0
TGTCATCTATACTGGTGGCAC.................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................CAGTGTTGTGTTTTTGAATCTTGTAG........................................................ 26 1 3 0.33 1 0 1 0 0 0 0 0
...............TGGCACCATTGGGATGACTCC..................................................................................................................................... 21 0 3 0.33 1 0 0 1 0 0 0 0
.................................................................................................................................................TTCATCCGGAAGGATGTCAGTCTG 24 0 3 0.33 1 0 1 0 0 0 0 0
...........................................................................................................TTTTAGTATTAGTGCCAGAAC......................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
...........CTGGTGGCACCATTGGGATGACTCC..................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0
........................TGGGATGACTCCCAACGACAATGGTG....................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................CTTGTAGTATTAGTGCCAGAAC......................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................GTATTAGTGCCAGAACCGAAAGCTT................................ 25 0 3 0.33 1 1 0 0 0 0 0 0
........ATACTGGTGGCACCATTGGG............................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................................ATTAGTGCCAGAACCGAAAGC.................................. 21 0 3 0.33 1 1 0 0 0 0 0 0
.............................................TGGTGGTAAGAGGCCTCCAAGTGC.................................................................................................... 24 0 3 0.33 1 0 0 1 0 0 0 0
...................................................................................................................................AAGCTTTTGAAAGGTTCATCC................. 21 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................CCAGAACCGAAAGCTTTTG............................. 19 0 3 0.33 1 1 0 0 0 0 0 0
..............GCGGCACCATTGGGATGACTCC..................................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................................AGAACCGAAAGCTTTTGAAAG......................... 21 0 3 0.33 1 1 0 0 0 0 0 0
...CATCTATACTGGTGGCACCATTGGGAT........................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................AGAGGCCTCCAAGTGCATACG............................................................................................... 21 0 3 0.33 1 0 0 0 1 0 0 0
.............GGTGGCACCATTGGGATGAC........................................................................................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................TGTAGTATTAGTGCCAGAACC........................................ 21 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................TTTGAAAGGTTCATCCGGAAGT........... 22 1 3 0.33 1 1 0 0 0 0 0 0
........ATACTGGTGGCACCATTGG.............................................................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0 0
.......TATACTGGTGGCACCATTGGGATGAC........................................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................................GCTTTTGAAAGGTTCATCCGGAAGGA.......... 26 0 3 0.33 1 0 1 0 0 0 0 0
..............................................................................................................................ACCGAAAGCTTTTGAAAGGTT...................... 21 0 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................AATCTTGTAGTATTAGTGCC.............................................. 20 1 3 0.33 1 1 0 0 0 0 0 0
..............GTGGCACCATTGGGATGA......................................................................................................................................... 18 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................TTCAGTGTTGTGTTTTTGAATCTTGTAG........................................................ 28 1 3 0.33 1 0 0 1 0 0 0 0
.................................................................................................................................GAAAGCTTTTGAAAGGTTCATCCGGAA............. 27 0 3 0.33 1 0 1 0 0 0 0 0
.......................TTGGGATGACTCCCAACGACA............................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................AACCGAAAGCTTTTGAAAGGT....................... 21 0 3 0.33 1 1 0 0 0 0 0 0
...CATCTATACTGGCGGCACCAT................................................................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................................TAGTGCCAGAACCGAAAGCTTTTG............................. 24 0 3 0.33 1 0 1 0 0 0 0 0
......CTATACTGGCGGCACCATTGGG............................................................................................................................................. 22 1 3 0.33 1 0 0 1 0 0 0 0
..TCATCTATACTGGTGGCACCAT................................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................AGTGCCAGAACCGAAAGCTT................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
............TGGTGGCACCATTGGGATGAC........................................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................................................AAAGGTTCATCCGGAAGGAT......... 20 0 3 0.33 1 1 0 0 0 0 0 0
.....................CATTGGGATGACTCCCAACGACA............................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0 0
..........ACTGGTGGCACCATTGGGAT........................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................................GAACCGAAAGCTTTTGAAAGG........................ 21 0 3 0.33 1 1 0 0 0 0 0 0
...................................................................................................................................AAGCTTTTGAAAGGTTCATCCA................ 22 1 3 0.33 1 0 0 1 0 0 0 0
.............................TGACTCCCAACGACAATGGT........................................................................................................................ 20 0 3 0.33 1 1 0 0 0 0 0 0
...................................................................................................................................CAGCTTTTGAAAGGTTCATCC................. 21 1 3 0.33 1 1 0 0 0 0 0 0
...............TGGCACCATTGGGATGACTCCCAACGA............................................................................................................................... 27 0 3 0.33 1 0 1 0 0 0 0 0
..................................................................................................TTTTGAATCTTGTAGTATTAGTGCCA............................................. 26 1 3 0.33 1 0 0 1 0 0 0 0
..................................................................................................................................TCAGCTTTTGAAAGGTTCATCCT................ 23 3 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................TGAATCTTGTAGTATTAGTGCC.............................................. 22 1 3 0.33 1 0 1 0 0 0 0 0
......................................ACGACAATGGTGGTAAGAGGT.............................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0
...........................GATGACTCCCAACGACAAT........................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
...................ACCATTGGGATGACTCCCAACGACAAT........................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0
....ATCTATACTGGTGGCACCA.................................................................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................AGTGCCAGAACCGAAAGCT................................. 19 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................TTGAAAGGTTCATCCGGAAGGATGTC...... 26 0 3 0.33 1 0 0 1 0 0 0 0
....................................................................................................TTGAATCTTGTAGTATTAGTGCCAGA........................................... 26 1 3 0.33 1 0 1 0 0 0 0 0
......CTATACTGGTGGCACCATTGGG............................................................................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0 0
..................................................................................CAGTTCAGTGTTGTGTTTTTG.................................................................. 21 0 3 0.33 1 0 0 1 0 0 0 0
..................................................................................................................ATTAGTGCCAGAACCGAAAGCTTTT.............................. 25 0 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................................................................CGGAAGGATGTCAGTCTG 18 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................TGTATTAGTGCCAGAACCGAAAGC.................................. 24 1 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................TGTTGTGTTTTTGAATCTTGTAGTAT..................................................... 26 1 3 0.33 1 0 0 0 1 0 0 0
...........................GATGACTCCCAACGACAATG.......................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
...................................................TAAGAGGCCTCCAAGTGCATACGGA............................................................................................. 25 0 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................................AGCTTTTGAAAGGTTCATCCGGAAG............ 25 0 3 0.33 1 1 0 0 0 0 0 0
...........CTGGCGGCACCATTGGGATG.......................................................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0
TGTCATCTATACTGGTGGCACC................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................TTGAAAGGTTCATCCGGAAGGAT......... 23 0 3 0.33 1 0 0 1 0 0 0 0
..................................................................................................................ATTAGTGCCAGAACCGAAAG................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................TTTAGTATTAGTGCCAGAACCGAAAGCT................................. 28 0 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................GTATTAGTGCCAGAACCGAAAG................................... 22 0 3 0.33 1 1 0 0 0 0 0 0
.................................................GGTAAGAGGCCTCCAAGTGCA................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................GAAAGCTTTTGAAAGGTT...................... 18 0 3 0.33 1 1 0 0 0 0 0 0
...........CTGGTGGCACCATTGGGATGA......................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0
......................................................................................................................................CTTTTGAAAGGTTCATCCGG............... 20 0 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................ATTGAAAGGTTCATCCGGA.............. 19 1 3 0.33 1 1 0 0 0 0 0 0
...................................................................................................................................................CATCCGGAAGGATGTCAGTCT. 21 0 3 0.33 1 1 0 0 0 0 0 0
....ATCTATACTGGTGGCACCAT................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0
...........................................................................................................................................GAAAGGTTCATCCGGAAGGA.......... 20 0 3 0.33 1 1 0 0 0 0 0 0
...............................................GTGGTAAGAGGCCTCCAAGTGT.................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................GGTGTATTAGTGCCAGAACCG....................................... 21 3 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................................................TCCGGAAGGATGTCAGTCT. 19 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................CCGAAAGCTTTTGAAAGGTT...................... 20 0 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................................CCGAAAGCTTTTGAAAGGTTC..................... 21 0 3 0.33 1 0 0 1 0 0 0 0
........................TGGGATGACTCCCAACGAC.............................................................................................................................. 19 0 3 0.33 1 1 0 0 0 0 0 0
........................................................GGCCTCCAAGTGCATACGGAT............................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................TTGTGTTTTTGAATCTTTTA......................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................GCCAGAACCGAAAGCTTTTGAAAGG........................ 25 0 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................................AACCGAAAGCTTTTGAAAGG........................ 20 0 3 0.33 1 1 0 0 0 0 0 0
.........................................ACAATGGTGGTAAGAGGCCTTT.......................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0
....ATCTATACTGGTGGCACCATTGGGAT........................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0
...........CTGGTGGCACCATTGGGATGAC........................................................................................................................................ 22 0 3 0.33 1 0 0 0 0 0 0 1
.......................................................................................................AATCTTGTAGTATTAGTGCCA............................................. 21 1 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................TTGAATCTTGTAGTATTAGTG................................................ 21 1 3 0.33 1 0 1 0 0 0 0 0
......................................................................................................GAATCTTTTAGTATTAGTGCC.............................................. 21 0 3 0.33 1 1 0 0 0 0 0 0
............TGGCGGCACCATTGGGATGACTCCCC................................................................................................................................... 26 2 3 0.33 1 0 1 0 0 0 0 0
.............................................................................................TGTGTTTTTGAATCTTGTAGTAT..................................................... 23 1 3 0.33 1 0 0 0 1 0 0 0
.............................................................................................................................................AAGGTTCATCCGGAAGGAT......... 19 0 3 0.33 1 1 0 0 0 0 0 0
............................ATGACTCCCAACGACAATG.......................................................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0
..................CACCATTGGGATGACTCCCAA.................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0 0
.......TATACTGGCGGCACCATTGG.............................................................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0 0
.....TCTATACTGGTGGCACCATTGGG............................................................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0 0
...CATCTATACTGGTGGCACCT.................................................................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................TGTATTAGTGCCAGAACCGAA..................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
................................................................................TCCAGTTCAGTGTTGTGTTTTTGA................................................................. 24 0 3 0.33 1 0 1 0 0 0 0 0
.......TATACTGGCGGCACCATTGGGATG.......................................................................................................................................... 24 1 3 0.33 1 0 0 1 0 0 0 0
......CTATACTGGTGGCACCATTGGC............................................................................................................................................. 22 1 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................TGTATTAGTGCCAGAACCGA...................................... 20 1 3 0.33 1 1 0 0 0 0 0 0
...CATCTATACTGGTGGCACCA.................................................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................TGGTGTATTAGTGCCAGAACC........................................ 21 3 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................................GGTGTATTAGTGCCAGAACC........................................ 20 3 8 0.13 1 1 0 0 0 0 0 0
...........ATGGTGGGACCAGTGGGAT........................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0
.........TACGGGAGGCAGCATTGGG............................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

ACAGTAGATATGACCACCGTGGTAACCCTACTGAGGGTTGCTGTTACCACCATTCTCCGGAGGTTCACGTATGCCTATCGAGGTCAAGTCACAACACAAAAACTTAGAAAATCATAATCACGGTCTTGGCTTTCGAAAACTTTCCAAGTAGGCCTTCCTACAGTCAGAC
***********************************************************...((((....((((.(((((((...(((....)))...))).)))).))))..)))).*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902011
testis
 V112
male body		 M062
head
 GSM444067
head
 GSM343916
embryo
.......................................................................................................................ACGGTCTTGGCTTTCGAAAAC............................. 21 0 3 3.33 10 9 0 1 0 0 0
.....................................................................................................................TCACGGTCTTGGCTTTCGAAA............................... 21 0 3 3.33 10 10 0 0 0 0 0
.........................................................................................................................GGTCTTGGCTTTCGAAAACTT........................... 21 0 3 3.00 9 9 0 0 0 0 0
........................................................................................................................CGGTCTTGGCTTTCGAAAAC............................. 20 0 3 3.00 9 8 0 1 0 0 0
..............................................................................................................................TGGCTTTCGAAAACTTTCCAA...................... 21 0 3 2.33 7 5 0 1 1 0 0
....................................................................................................................ATCACGGTCTTGGCTTTCGAA................................ 21 0 3 2.00 6 6 0 0 0 0 0
...........................................................................................................................TCTTGGCTTTCGAAAACTTTC......................... 21 0 3 1.67 5 4 0 1 0 0 0
..........................................................................................................................GTCTTGGCTTTCGAAAACTTTC......................... 22 0 3 1.67 5 5 0 0 0 0 0
.....................................................................................................................................................AGGCCTTCCTACAGTCAGAC 20 0 3 1.67 5 5 0 0 0 0 0
......................................................................................................................CACGGTCTTGGCTTTCGAAA............................... 20 0 3 1.33 4 4 0 0 0 0 0
....................................................................................CAAGTCACAACACAAAAACTTAGAACA.......................................................... 27 1 3 1.33 4 0 4 0 0 0 0
....................................................................................................................................................TAGGCCTTCCTACAGTCAGAC 21 0 3 1.33 4 4 0 0 0 0 0
...........................................................................................................................................CTTTCCAAGTAGGCCTTCCTA......... 21 0 3 1.33 4 4 0 0 0 0 0
................................................................................................................................GCTTTCGAAAACTTTCCAAGT.................... 21 0 3 1.00 3 3 0 0 0 0 0
.............................................................................TCGAGGTCAAGTCACAACACA....................................................................... 21 0 2 1.00 2 1 0 1 0 0 0
..........................................................................................................................GTCTTGGCTTTCGAAAACTTT.......................... 21 0 3 1.00 3 3 0 0 0 0 0
.............................................................................................................................TTGGCTTTCGAAAACTTTCCA....................... 21 0 3 1.00 3 3 0 0 0 0 0
......................................................................................................................CACGGTCTTGGCTTTCGAAAA.............................. 21 0 3 1.00 3 3 0 0 0 0 0
............................................................................................AACACAAAAACTTAGAACATCATAAT................................................... 26 1 3 0.67 2 0 2 0 0 0 0
........................................................................................................................................AAACTTTCCAAGTAGGCCTTC............ 21 0 3 0.67 2 1 0 1 0 0 0
........................ACCCTACTGAGGGTTGCTG.............................................................................................................................. 19 0 3 0.67 2 2 0 0 0 0 0
.......................................................................................................................ACGGTCTTGGCTTTCGAAAA.............................. 20 0 3 0.67 2 2 0 0 0 0 0
...............................................................................................................................GGCTTTCGAAAACTTTCCAAGTAGGC................ 26 0 3 0.67 2 0 2 0 0 0 0
...............................................................................................................................GGCTTTCGAAAACTTTCCAAG..................... 21 0 3 0.67 2 2 0 0 0 0 0
...........................CTACTGAGGGTTGCTGTTACC......................................................................................................................... 21 0 3 0.67 2 2 0 0 0 0 0
.............................................................................................................................................TTCCAAGTAGGCCTTCCTACA....... 21 0 3 0.67 2 2 0 0 0 0 0
.........................................................................................................................GGTCTTGGCTTTCGAAAACT............................ 20 0 3 0.67 2 2 0 0 0 0 0
...................................................................CGTATGCCTATCGAGGTCAA.................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
..............................................................................CGAGGTCAAGTCACAACAC........................................................................ 19 0 2 0.50 1 1 0 0 0 0 0
.................................................................CACGTATGCCTATCGAGGTCAAGT................................................................................ 24 0 2 0.50 1 1 0 0 0 0 0
.................................................................CACGTATGCCTATCGAGGTCA................................................................................... 21 0 2 0.50 1 1 0 0 0 0 0
............................................................................TTTGAGGTCAAGTCACAACACAAA..................................................................... 24 2 2 0.50 1 1 0 0 0 0 0
........................................................................GCCTATCGAGGTCAAGTCACAACACAA...................................................................... 27 0 2 0.50 1 1 0 0 0 0 0
...............................................................................GAGGTCAAGTCACAACACAAAAA................................................................... 23 0 2 0.50 1 1 0 0 0 0 0
........................ACCCTACTGAGGGTTGCTGTT............................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0
...............................................................................................................TCATAATCACGGTCTTGGCTT..................................... 21 0 3 0.33 1 1 0 0 0 0 0
........................ACCCTACTGAGGGTTGCTGTTA........................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
ACAGTAGATATGACCGCCGT..................................................................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
......................................................................................................................CACGGTCTTGGCTTTCGAAAACC............................ 23 1 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................TCACGGTCTTGGCTTTCGAA................................ 20 0 3 0.33 1 1 0 0 0 0 0
...................................................................................................................AATCACGGTCTTGGCTTTCGA................................. 21 0 3 0.33 1 1 0 0 0 0 0
..................................................CATTCTCCGGAGGTTCACGTA.................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
......................................................................................................................AACGGTCTTGGCTTTCGAAAAC............................. 22 1 3 0.33 1 0 0 1 0 0 0
...................................................................................TCAAGTCACAACACAAAAACTT................................................................ 22 0 3 0.33 1 1 0 0 0 0 0
...................................GGTTGCTGTTACCACCATTCT................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................TTGGCTTTCGAAAACTTTCC........................ 20 0 3 0.33 1 1 0 0 0 0 0
......................................................................................AGTCACAACACAAAAACTTA............................................................... 20 0 3 0.33 1 1 0 0 0 0 0
................CCGTGGTAACCCTACTGAGG..................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................TCGGTCTTGGCTTTCGAAAACT............................ 22 1 3 0.33 1 1 0 0 0 0 0
.........................................................CGGAGGTTCACGTATGCCTAT........................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
.............................................................GGTTCACGTATGCCTATCG......................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0
..................GTGGTAACCCTACTGAGGGTT.................................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
........................................................................................................................................AAACTTTCCAAGTAGGCCTT............. 20 0 3 0.33 1 1 0 0 0 0 0
............................................................................................................................................TTTCCAAGTAGGCCTTCCTAC........ 21 0 3 0.33 1 1 0 0 0 0 0
..........TGACCACCGTGGTAACCCTAC.......................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
....................................................TTCTCCGGAGGTTCACGTATG................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................CACAACACAAAAACTTAGAAAATCATAAT................................................... 29 0 3 0.33 1 0 1 0 0 0 0
.................................................................................................................GTAATCACGGTCTTGGCTTTCG.................................. 22 1 3 0.33 1 1 0 0 0 0 0
..........................CCTACTGAGGGTTGCTGTTA........................................................................................................................... 20 0 3 0.33 1 0 0 1 0 0 0
......................................................................................AGTCACAACACAAAAACTTAG.............................................................. 21 0 3 0.33 1 1 0 0 0 0 0
............................................................AGGTTCACGTATGCCTATCG......................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
........................................................................................................................CGGTCTTGGCTTTCGAAAA.............................. 19 0 3 0.33 1 1 0 0 0 0 0
......................TAACCCTACTGAGGGTTGCTG.............................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................TTGAAAACTTTCCAAGTAGGCCT.............. 23 1 3 0.33 1 1 0 0 0 0 0
..............................CTGAGGGTTGCTGTTACCACCA..................................................................................................................... 22 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................CACAACACAAAAACTTAGAACATCATAAT................................................... 29 1 3 0.33 1 0 1 0 0 0 0
....................................................................................................................................TCGAAAACTTTCCAAGTAGGC................ 21 0 3 0.33 1 1 0 0 0 0 0
.CAGTAGATATGACCACCGTG.................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
..................................GGGTTGCTGTTACCACCATT................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
.................................................................................GGTCAAGTCACAACACAAAAACT................................................................. 23 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................GGTCTTGGCTTTCGAAAAC............................. 19 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................ACGGTCTTGGCTTTCGAAAACTTTCCA....................... 27 0 3 0.33 1 1 0 0 0 0 0
................................GAGGGTTGCTGTTACCACCA..................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
.........................................................TGGAGGTTCACGTATGCCTAT........................................................................................... 21 1 3 0.33 1 0 1 0 0 0 0
...............ACCGTGGTAACCCTACTGAG...................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
......CATATGACCACCGTGGTAAC............................................................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0
................CCGTGGTAACCCTACTGAGGG.................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................................ATCACGGTCTTGGCTTTCGA................................. 20 0 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TAATCACGGTCTTGGCTTTCG.................................. 21 0 3 0.33 1 1 0 0 0 0 0
..............................................................................................................................................TCCAAGTAGGCCTTCCTACAGTCAGA. 26 0 3 0.33 1 1 0 0 0 0 0
..........................CCTGCTGAGGGTTGCTGT............................................................................................................................. 18 1 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................................TAGGCCTTCCTACAGTCAGA. 20 0 3 0.33 1 1 0 0 0 0 0
........TATGACCACCGTGGTAACCCTC........................................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0 0
.........ATGACCACCGTGGTAACCCTA........................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
......................................................................................................................................GAAAACTTTCCAAGTAGGCCT.............. 21 0 3 0.33 1 1 0 0 0 0 0
.......................................................................................................................................AAAACTTTCCAAGTAGGCCTTCCTA......... 25 0 3 0.33 1 1 0 0 0 0 0
.................................................................................................................................CTTTCGAAAACTTTCCAAGTA................... 21 0 3 0.33 1 1 0 0 0 0 0
........TATGACCACCGTGGTAACCCT............................................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................AGGCCTTCCTACGGTCAGAC 20 1 3 0.33 1 1 0 0 0 0 0
......................................................................................................................CACGGTCTTGGCTTTC................................... 16 0 3 0.33 1 0 1 0 0 0 0
........................................................................................................................CGGTCTTGGCTTTCGAAAACT............................ 21 0 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................................AACTTTCCAAGTAGGCCTTC............ 20 0 3 0.33 1 1 0 0 0 0 0
..........................................................GGAGGTTCACGTATGCCTATC.......................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
......................................................CTCCGGAGGTTCACGTATGC............................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
....................................................................................................................................................TAGGCCTTCCTACAGTCAGAT 21 1 3 0.33 1 1 0 0 0 0 0
.............CCACCGTGGTAACCCTACTGA....................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
.............................................ACCACCATTCTCCGGAGGTT........................................................................................................ 20 0 3 0.33 1 0 1 0 0 0 0
........................ACCCTACTGAGGGTTGCTGT............................................................................................................................. 20 0 3 0.33 1 1 0 0 0 0 0
.......................................GCTGTTACCACCATTCTCCGG............................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
...................................................................................................................................TTCGAAAACTTTCCAAGTAG.................. 20 0 3 0.33 1 1 0 0 0 0 0
..................................GGGTTGCTGTTACCACCATTC.................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
............................................................................................................................CTTGGCTTTCGAAAACTTTCC........................ 21 0 3 0.33 1 0 0 0 1 0 0
...............................TGAGGGTTGCTGTTACCACCA..................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0
................................................................................................................CATAATCACGGTCTTGGCTTT.................................... 21 0 3 0.33 1 1 0 0 0 0 0
.....................................................................................................................................................AGGCCTTCCTACAGTCAGA. 19 0 3 0.33 1 1 0 0 0 0 0
.............................ACTGAGGGTTGCTGTTACCACCATT................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0
..............CACCGTGGTAACCCTACTGA....................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0
..................................................................................GTCAAGTCACAACACAAAAAC.................................................................. 21 0 3 0.33 1 1 0 0 0 0 0
............ACCACCGTGGTAACCCTACTG........................................................................................................................................ 21 0 3 0.33 1 1 0 0 0 0 0
........................................................CCGGAGGTTGACGTATGGGTA............................................................................................ 21 3 4 0.25 1 0 0 0 1 0 0
.......................................................................................................................TTGGTCTTGGCTTTCGAAAA.............................. 20 2 4 0.25 1 1 0 0 0 0 0
..................................................................................................................TAATCGCGGTCTTGGGTT..................................... 18 2 11 0.09 1 0 0 0 0 1 0
............ACCTCCGTGGTAGCCCTAA.......................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0
.............................ACTGAAGGTTGCCGATACC......................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0
............................................................................................ACCAGAAAAACTTAGAAAATTA....................................................... 22 3 20 0.05 1 1 0 0 0 0 0
ACAATAGATATGACCATCA...................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
....................................................................................CAATTGACAACACAAAAAGT................................................................. 20 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 3:3941354-3941522 - dps_1002 TGTCATCTATACTGGTGGCACCATTGGGATGACTCCCAACGACAATGGTGGTAAGAGGC------CTCCAAGTGCATACGGATAGCT---------------------CC-----------A------------GTTCAGTGTTGT---------GTTTTTGAATC------TTTTAGTATTAGTGCCAGAACCGAAAGCTTTTGAAAGGTTCATCCGGAAGGATGTCAGTCTG
droPer2 scaffold_8:2443185-2443353 - TGTCATCTATACTGGTGGCACCATTGGGATGACTCCCAACGACAATGGTGGTAAGAGGC------CTCCAAGTGCATACGGATAGCT---------------------CC-----------A------------GTTCAGTGTTGT---------GTTTTTGAATC------TTTTAGTATTAGTGCCAGAACCGAAAGCTTTTGAAAGGTTCATCCGGAAGGATGTCAGTCTG
droWil2 scf2_1100000004516:352049-352223 - GACCATCTATACTGGCGGAACAATTGGCATGACTTTGAATGAGAATGGCGGTAAGTTAT------TTATAA-----TTATGATTA--------CTCTGAATAATAGTTCC-----------A--------------TAAATAATAT---------ACATACATATG------TGTTAGTGCTGGCCCCTGTTCCCGGACAATTTGAGCCAAGAATCCGTGAGGATATGAATTTT
droVir3 scaffold_13042:2147052-2147215 + AGTCATCTACACGGGCGGCACCATCGGCATGATGCGCAACGAGCGACACGGTGGGTGCA------CCCACTCCC------CATCTAC---------------------CT-----------A------------AT-C----CCGCT-CTAAT--CCCGCTCTCTC------TTGCAGTGTTGGCGCCCATACCGAACGCCCTGGTCCGGCTCATACGCAAATATCCCAATATA
droMoj3 scaffold_6540:9157217-9157381 + TGTCATCTACACTGGCGGTTGCATTGGCATGATGCGGATGGAAGACGGGTGTAAGTGTAATATATCC-------------AATAGAT---------------------TT-----------A------------AACA----ATATTTAAAAA--GGCTCGTTTGTCGT------CAGCTTTGCAAAACGTTAGCGGAGAACTCATTAAACGACTGCGCGAAGATACCAGCTTT
droGri2 scaffold_14853:3440311-3440504 + TGTCATTTATACGGGCGGCACCATTGGCATGATGCGCAACGAGCGCAACGGTATTGCAA------TC-------------ATTCAGCTACCCCTCTCATCTCCCATCTCTCCTCCATCATTC--TC--------ATCT----CTCTT-CTTTTCCACCCCCGCCTT------TTATAGTGCTTGCGCCGATTCCGAAAGCTTTGGTGCGTCTCATCCGTAAATATCCAAATATC
droAna3 scaffold_13340:6191523-6191685 + TGTCATCTTCGTGGGAGGAACAATTGGAATGACAAGAAATGAAAAAGGAGGTGAGTGTA------GTTG-----TATACCGATCT--------TATCAA--------------------------------------C----TAATA-GTGAT--CATTAATCCTTAAT------CAGAATTGGTTTGTGTACCCAAAATTTTTTGTCAACGGCTTAACGAATTCCCAACCTG-
droBip1 scf7180000396708:2646462-2646624 - TGTCATCTTCGTGGGAGGAACAATTGGAATGATAAGAAATGAAAACGGAGGTGGGTGAA------GTGG-----TATACCGATCT--------TATCAACTAATAG------------------------------------TGAT---------TCTTATTCCTC------ACTCAGATTTAGTTTGTGTACCCAACATTTTTTGTAAACGGCTCACCGAATACCCGACCTG-
droKik1 scf7180000302706:1841214-1841380 + TGTGATCTACGTGGGTGGGGCAATTGGAATGCTGCGCGACGATAACGGGGGTGGGTAGA------CAATACAAA------GATTAGC---------------------CT-----------A------------GTCC----CAGTA-CCAAA--CGTTCACC----GTCCAATCCAGAGCTGGCTAGCGAACCCAATGTGCTCGCAACTCGCTTCCAAGAGTGTCCCAGCTGC
droFic1 scf7180000453901:604630-604683 + -GTCATATACACGGGCGGAACCATCGGAATGGTGCGCAACGACCGGAACGGTGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490967:1116437-1116606 - TGTCATCTACGTGGGCGGCACCATTGGAATGATGCGCAACGACTCGGGAGGTTTGTGAT------TC-------------GTATCCT---------------------CT-----------ATGGTATAGGTATGTGT----ATGTA-CTTAT--CCCTTAAATTCCAT------TAGTTCTGCACACCGTGCCCGGGATGTTGGCTGAGCGGCTCCACGAAATTCCCAGCTGC
droRho1 scf7180000779334:859841-859894 + -GTCATCTACACGGGCGGAACCATCGGGATGGTGCGCAACGAACGGAATGGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302402:3108857-3109019 + TGTCATCTACGTGGGTGGAACAATCGGAATGATCCGCAACGAGTCCGGCGGTGGGTGAA------TC-------------AGTAGCT---------------------TT-----------A--ATATC-----GATC----TTTCT-CTAAA--CCCTTGTCTTCCAT------TAGTACTGCACACCGTGCCGAATTTGTTGGCCGAGCGCCTCCATGAGTTTTCCAGCTGT
droTak1 scf7180000415653:678317-678475 + TGTCATCTACGTGGGAGGAACTATCGGAATGATCCGCAATGAGTCGGGAGGTGGGTGAA------TC-------------GATTGCT---------------------TT-----------A------------AACT----CTTTTACAATC--CCCTCCTCTTCCAT------TAGTACTGCAAACCGTGCCGAAGATGTTGGCTGAGCGGCTCCAGGAGTTTCCCAGCTGC
droEug1 scf7180000407136:66485-66642 - TGTTATATACGTTGGCGGAACTATTGGAATGATCCGTGACGAGTCTGGAGGTGGGTGAA------TC-------------AGTATAT---------------------CT-----------T------------ATTT----GTGTA-TTAAT--TTCTTGCTTTCCTT------TAGTACTGCGTCCTGAGCATAATGTATTGGCCAAGCGCATCTGCGATTTTCCGAGCTGC
dm3 chr3R:5627249-5627405 + TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------AATGGCT---------------------CT-----------T------------GTCC----GTGTA-CTAAT--CAATTGTTTCTCAT------CAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCTTCAAGAGTTTCCCAGCTG-
droSim2 3r:15407223-15407379 - TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------GATGGCT---------------------CT-----------A------------GTCC----TTGTA-CCAAT--CAATTGTTTCCCAT------CAGCACTGCACACCGAGCCCAAGGTGCTGGCTCGGCAGCTCCAAGAGTTTCCCAGCTG-
droSec2 scaffold_0:16277265-16277421 - TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------GATGGGT---------------------CT-----------A------------GTCC----TTGTA-CCAAT--CAATCGTTTCCCAT------CAGTACTGCACACCGAGCCCAAGGTGCTGGCTCGGCAGCTTCAAGAGTTTCCCAGCTG-
droYak3 3R:9673956-9674113 + TGTCATCTACGTTGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------GATGGCT---------------------CT-----------A------------GTCT----TTCTA-CCAAT--CACCTCTTTTCCAT------TAGTACTGCACGCCGTACCCATGGTGCTGGGTCAGCAGCTTCAGGAGTTTCCCAGCTGC
droEre2 scaffold_4770:15977772-15977929 - TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGAGTATA------TC-------------GTTGGCT---------------------CT-----------A------------GGCT----GTGTA-CCTAT--AACCTGTTTGCCAT------TAGTACTGCACACCGTGCCCAAGGTGCTGGGTGAGCAGCTTCAAGAGTTTCCCAGCTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGTCATCTATACTGGTGGCACCATTGGGATGACTCCCAACGACAATGGTGGTAAGAGGC------CTCCAAGTGCATACGGATAGCT---------------------CC-----------A------------GTTCAGTGTTGT---------GTTTTTGAATC------TTTTAGTATTAGTGCCAGAACCGAAAGCTTTTGAAAGGTTCATCCGGAAGGATGTCAGTCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................ATCCGGAAGGATGTCAGTCTG2135.331601600000000
...........................GATGACTCCCAACGACAATGGT.........................................................................................................................................................................................2235.331601600000000
..........................................................................................................................................................................................................TTGAAAGGTTCATCCGGAAGG...........2133.671101100000000
............................ATGACTCCCAACGACAATGGT.........................................................................................................................................................................................2133.671101100000000
.......................................................................................................................................................................................................CTTTTGAAAGGTTCATCCGGA..............2133.331001000000000
....................................................................................................................................................................................TTAGTGCCAGAACCGAAAGCT.................................2133.331001000000000
......................................................................................................................................................................................AGTGCCAGAACCGAAAGCTTT...............................2132.6780800000000
..TCATCTATACTGGTGGCACCA...................................................................................................................................................................................................................2132.3370700000000
...........................GATGACTCCCAACGACAATGG..........................................................................................................................................................................................2132.3370700000000
.GTCATCTATACTGGTGGCACC....................................................................................................................................................................................................................2132.0060600000000
.........................................................................................................................................................................................................TTTGAAAGGTTCATCCGGAAG............2132.0060500001000
.................................................................................................................................................................................GTATTAGTGCCAGAACCGA......................................1931.6750500000000
......................................................................................................................................................................................................................TCCGGAAGGATGTCAGTCTG2031.3340400000000
.................................................................................................................................................................................GTATTAGTGCCAGAACCGAAA....................................2131.3340400000000
........................................................................................................................................................................................................TTTTGAAAGGTTCATCCGGAA.............2131.3340400000000
.......................................................................................................................................TTCAGTGTTGT---------GTTTTTGAATC------TTG...........................................................2531.3340000000040
....ATCTATACTGGTGGCACCATT.................................................................................................................................................................................................................2131.3340400000000
...............................................................................................................................................................................................................AGGTTCATCCGGAAGGATGTC......2131.3340400000000
...CATCTATACTGGTGGCACCAT..................................................................................................................................................................................................................2131.3340400000000
....ATCTATACTGGTGGCACCATTGG...............................................................................................................................................................................................................2331.3340400000000
.....................................................................................................................................................................................................AGCTTTTGAAAGGTTCATCC.................2031.0030300000000
..........................................................................................................................................................................................................TTGAAAGGTTCATCCGGAAG............2031.0030300000000
.......................................................................................................................................................................................................CTTTTGAAAGGTTCATCCGGAAG............2331.0030300000000
........................................................................................................................................................................................................TTTTGAAAGGTTCATCCGGA..............2031.0030300000000
.....TCTATACTGGTGGCACCATTG................................................................................................................................................................................................................2131.0030300000000
............................................................................................................................................................................................................GAAAGGTTCATCCGGAAGGAT.........2131.0030300000000
..TCATCTATACTGGTGGCACC....................................................................................................................................................................................................................2031.0030300000000
........................................GACAATGGTGGTAAGAGGC------CT.......................................................................................................................................................................2131.0030200001000
...........................................................................................................................................................................................................TGAAAGGTTCATCCGGAAGGA..........2131.0030300000000
...........................................................................................................................................................................................................TGAAAGGTTCATCCGGAAGG...........2031.0030300000000
.................................................................................................................................................................................GTATTAGTGCCAGAACCGAA.....................................2031.0030300000000
..............................GACTCCCAACGACAATGGT.........................................................................................................................................................................................1931.0030300000000
.........TACTGGTGGCACCATTGGGATG...........................................................................................................................................................................................................2231.0030201000000
............................ATGACTCCCAACGACAATGG..........................................................................................................................................................................................2031.0030300000000
........ATACTGGTGGCACCATTGGGA.............................................................................................................................................................................................................2131.0030300000000
......CTATACTGGTGGCACCATTGGGATGACT........................................................................................................................................................................................................2830.6720200000000
.............................TGACTCCCAACGACAATGGTG........................................................................................................................................................................................2130.6720200000000
.................................................................................................................................................................................GTATTAGTGCCAGAACCGAAAGCTTTT..............................2730.6720200000000
............................ATGACTCCCAACGACAATGGTG........................................................................................................................................................................................2230.6720200000000
..................................................................................................................................................................................TATTAGTGCCAGAACCGAAA....................................2030.6720200000000
......CTATACTGGTGGCACCATTG................................................................................................................................................................................................................2030.6720200000000
.....................................AACGACAATGGTGGTAAGAGG................................................................................................................................................................................2130.6720200000000
.........................................................................................................................................CAGTGTTGT---------GTTTTTGAATC------TTT...........................................................2330.6720000000020
....................................................................................................................................................................................TTAGTGCCAGAACCGAAAGC..................................2030.6720200000000
....ATCTATACTGGTGGCACCATTG................................................................................................................................................................................................................2230.6720200000000
...................................................TAAGAGGC------CTCCAAGTGCATACG..........................................................................................................................................................2330.6720000000020
......................ATTGGGATGACTCCCAACGACAATGGT.........................................................................................................................................................................................2730.6720200000000
.........................................................................................................................................CAGTGTTGT---------GTTTTTGAATC------..............................................................2030.6720000000200
......................................ACGACAATGGTGGTAAGAGGC------.........................................................................................................................................................................2130.6720100001000
.......TATACTGGTGGCACCATTG................................................................................................................................................................................................................1930.6720200000000
..........................GGATGACTCCCAACGACAATG...........................................................................................................................................................................................2130.6720200000000
.......TATACTGGTGGCACCATTGG...............................................................................................................................................................................................................2030.6720200000000
.........................GGGATGACTCCCAACGACAATGGT.........................................................................................................................................................................................2430.6720200000000
..............................................................................................................................................................................................................AAGGTTCATCCGGAAGGATGTC......2230.6720000002000
......CTATACTGGTGGCACCATTGG...............................................................................................................................................................................................................2130.6720200000000
...................................................TAAGAGGC------CTCCAAGTGCATACGG.........................................................................................................................................................2430.6720000000020
.................................................................................................................................................................................................................GTTCATCCGGAAGGATGTCAGTCTG2530.6720200000000
................................................TGGTAAGAGGC------CTCCAAGTGCATACG..........................................................................................................................................................2630.6720000000020
.............................................................................................................................................................................................................AAAGGTTCATCCGGAAGGATG........2130.6720200000000
.......................................CGACAATGGTGGTAAGAGGC------.........................................................................................................................................................................2030.6720200000000
.....................................................................................................................................................................................................AGCTTTTGAAAGGTTCATC..................1930.6720200000000
..................................................................................................................................................................................TATTAGTGCCAGAACCGAAAG...................................2130.6720200000000
.......................................................................................................................................................................................GTGCCAGAACCGAAAGCTTTT..............................2130.6720200000000
.........................................ACAATGGTGGTAAGAGGC------CTC......................................................................................................................................................................2130.6720200000000
....................................................................CAAGTGCATACGGATAGCT---------------------CC-----------.................................................................................................................2120.5010100000000
....................................................................................GCT---------------------CC-----------A------------GTTCAGTGTTGT---------GTT............................................................................2120.5010100000000
......................................................................AGTGCATACGGATAGCT---------------------CC-----------A------------G...................................................................................................2120.5010100000000
........................................................................................................................................TCAGTGTTGT---------GTTTTTGAATC------..............................................................2130.3310000001000
.......................TTGGGATGACTCCCAACGACAATGGT.........................................................................................................................................................................................2630.3310100000000
..............GTGGCACCATTGGGATGACT........................................................................................................................................................................................................2030.3310000001000
.........TACTGGTGGCACCATTGGG..............................................................................................................................................................................................................1930.3310100000000
......................................................................................................................................................................................................GCTTTTGAAAGGTTCATCCGG...............2130.3310100000000
.............................TGACTCCCAACGACAATGG..........................................................................................................................................................................................1930.3310100000000
.................................TCCCAACGACAATGGTGGTAAGAGG................................................................................................................................................................................2530.3310100000000
.....................................................................................................................................................................................TAGTGCCAGAACCGAAAGC..................................1930.3310100000000
........................................................................................................................................................................................TGCCAGAACCGAAAGCTTTTGAAAGGT.......................2730.3310000000010
...............................................................................................................................................................................................................AGGTTCATCCGGAAGGATG........1930.3310100000000
..........................................CAATGGTGGTAAGAGGC------CTCC.....................................................................................................................................................................2130.3310100000000
.......................................................................................................................................................................................................................CCGGAAGGATGTCAGTCT.1830.3310100000000
..........................................................................................................................................................................................CCAGAACCGAAAGCTTTTGAA...........................2130.3310100000000
...CATCTATACTGGTGGCACCATTGGG..............................................................................................................................................................................................................2530.3310100000000
.............................TGACTCCCAACGACAATGGTGT.......................................................................................................................................................................................2230.3310100000000
.......................................................................................................................................TTCAGTGTTGT---------GTTTTTGAA......................................................................2030.3310100000000
...CATCTATACTGGTGGCACCATTGG...............................................................................................................................................................................................................2430.3310100000000
...........CTGGTGGCACCATTGGGATGACTCCC.....................................................................................................................................................................................................2630.3310100000000
..............................................................................................................................................................................................................AAGGTTCATCCGGAAGGATGTT......2230.3310000001000
........................................................................................................................................................................................TGCCAGAACCGAAAGCTTTTGAAAGG........................2630.3310000001000
TGTCATCTATACTGGTGGCAC.....................................................................................................................................................................................................................2130.3310100000000
...............TGGCACCATTGGGATGACTCC......................................................................................................................................................................................................2130.3310000001000
..................................................................................................................................................................................................................TTCATCCGGAAGGATGTCAGTCTG2430.3310000000010
............................................................................................................................................................................TTTTAGTATTAGTGCCAGAAC.........................................2130.3310100000000
...........CTGGTGGCACCATTGGGATGACTCC......................................................................................................................................................................................................2530.3310100000000
........................TGGGATGACTCCCAACGACAATGGTG........................................................................................................................................................................................2630.3310000000010
.................................................................................................................................................................................GTATTAGTGCCAGAACCGAAAGCTT................................2530.3310100000000
........ATACTGGTGGCACCATTGGG..............................................................................................................................................................................................................2030.3310100000000
...................................................................................................................................................................................ATTAGTGCCAGAACCGAAAGC..................................2130.3310100000000
.............................................TGGTGGTAAGAGGC------CTCCAAGTGC...............................................................................................................................................................2430.3310000001000
....................................................................................................................................................................................................AAGCTTTTGAAAGGTTCATCC.................2130.3310100000000
..........................................................................................................................................................................................CCAGAACCGAAAGCTTTTG.............................1930.3310100000000
............................................................................................................................................................................................AGAACCGAAAGCTTTTGAAAG.........................2130.3310100000000
...CATCTATACTGGTGGCACCATTGGGAT............................................................................................................................................................................................................2730.3310100000000
.....................................................AGAGGC------CTCCAAGTGCATACG..........................................................................................................................................................2130.3310000000100
.............GGTGGCACCATTGGGATGAC.........................................................................................................................................................................................................2030.3310100000000
.........................................................................................................................................................................................................TTTGAAAGGTTCATCCGGAAGT...........2230.3310100000000
........ATACTGGTGGCACCATTGG...............................................................................................................................................................................................................1930.3310100000000
.......TATACTGGTGGCACCATTGGGATGAC.........................................................................................................................................................................................................2630.3310100000000
......................................................................................................................................................................................................GCTTTTGAAAGGTTCATCCGGAAGGA..........2630.3310000000010
...............................................................................................................................................................................................ACCGAAAGCTTTTGAAAGGTT......................2130.3310100000000
..............GTGGCACCATTGGGATGA..........................................................................................................................................................................................................1830.3310100000000
..................................................................................................................................................................................................GAAAGCTTTTGAAAGGTTCATCCGGAA.............2730.3310000000010
.......................TTGGGATGACTCCCAACGACA..............................................................................................................................................................................................2130.3310100000000
..............................................................................................................................................................................................AACCGAAAGCTTTTGAAAGGT.......................2130.3310100000000
.....................................................................................................................................................................................TAGTGCCAGAACCGAAAGCTTTTG.............................2430.3310000000010
..TCATCTATACTGGTGGCACCAT..................................................................................................................................................................................................................2230.3310100000000
......................................................................................................................................................................................AGTGCCAGAACCGAAAGCTT................................2030.3310100000000
............TGGTGGCACCATTGGGATGAC.........................................................................................................................................................................................................2130.3310100000000
.............................................................................................................................................................................................................AAAGGTTCATCCGGAAGGAT.........2030.3310100000000
.....................CATTGGGATGACTCCCAACGACA..............................................................................................................................................................................................2330.3310100000000
..........ACTGGTGGCACCATTGGGAT............................................................................................................................................................................................................2030.3310100000000
.............................................................................................................................................................................................GAACCGAAAGCTTTTGAAAGG........................2130.3310100000000
....................................................................................................................................................................................................AAGCTTTTGAAAGGTTCATCCA................2230.3310000001000
.............................TGACTCCCAACGACAATGGT.........................................................................................................................................................................................2030.3310100000000
...............TGGCACCATTGGGATGACTCCCAACGA................................................................................................................................................................................................2730.3310000000010
......................................ACGACAATGGTGGTAAGAGGT------.........................................................................................................................................................................2130.3310100000000
...........................GATGACTCCCAACGACAAT............................................................................................................................................................................................1930.3310100000000
...................ACCATTGGGATGACTCCCAACGACAAT............................................................................................................................................................................................2730.3310100000000
....ATCTATACTGGTGGCACCA...................................................................................................................................................................................................................1930.3310100000000
......................................................................................................................................................................................AGTGCCAGAACCGAAAGCT.................................1930.3310100000000
..........................................................................................................................................................................................................TTGAAAGGTTCATCCGGAAGGATGTC......2630.3310000001000
......CTATACTGGTGGCACCATTGGG..............................................................................................................................................................................................................2230.3310100000000
.............................................................................................................C-----------A------------GTTCAGTGTTGT---------GTTTTTG........................................................................2130.3310000001000
...................................................................................................................................................................................ATTAGTGCCAGAACCGAAAGCTTTT..............................2530.3310100000000
........................................................................................................................................................................................................................CGGAAGGATGTCAGTCTG1830.3310100000000
...........................GATGACTCCCAACGACAATG...........................................................................................................................................................................................2030.3310100000000
...................................................TAAGAGGC------CTCCAAGTGCATACGGA........................................................................................................................................................2530.3310000000010
.....................................................................................................................................................................................................AGCTTTTGAAAGGTTCATCCGGAAG............2530.3310100000000
TGTCATCTATACTGGTGGCACC....................................................................................................................................................................................................................2230.3310100000000
..........................................................................................................................................................................................................TTGAAAGGTTCATCCGGAAGGAT.........2330.3310000001000
...................................................................................................................................................................................ATTAGTGCCAGAACCGAAAG...................................2030.3310100000000
.............................................................................................................................................................................TTTAGTATTAGTGCCAGAACCGAAAGCT.................................2830.3310100000000
.................................................................................................................................................................................GTATTAGTGCCAGAACCGAAAG...................................2230.3310100000000
.................................................GGTAAGAGGC------CTCCAAGTGCA..............................................................................................................................................................2130.3310100000000
..................................................................................................................................................................................................GAAAGCTTTTGAAAGGTT......................1830.3310100000000
...........CTGGTGGCACCATTGGGATGA..........................................................................................................................................................................................................2130.3310100000000
.......................................................................................................................................................................................................CTTTTGAAAGGTTCATCCGG...............2030.3310100000000
....................................................................................................................................................................................................................CATCCGGAAGGATGTCAGTCT.2130.3310100000000
....ATCTATACTGGTGGCACCAT..................................................................................................................................................................................................................2030.3310100000000
............................................................................................................................................................................................................GAAAGGTTCATCCGGAAGGA..........2030.3310100000000
...............................................GTGGTAAGAGGC------CTCCAAGTGT...............................................................................................................................................................2230.3310100000000
......................................................................................................................................................................................................................TCCGGAAGGATGTCAGTCT.1930.3310100000000
................................................................................................................................................................................................CCGAAAGCTTTTGAAAGGTT......................2030.3310100000000
................................................................................................................................................................................................CCGAAAGCTTTTGAAAGGTTC.....................2130.3310000001000
........................TGGGATGACTCCCAACGAC...............................................................................................................................................................................................1930.3310100000000
........................................................GGC------CTCCAAGTGCATACGGAT.......................................................................................................................................................2130.3310100000000
..............................................................................................................................................TTGT---------GTTTTTGAATC------TTTTA.........................................................2030.3310100000000
.........................................................................................................................................................................................GCCAGAACCGAAAGCTTTTGAAAGG........................2530.3310100000000
..............................................................................................................................................................................................AACCGAAAGCTTTTGAAAGG........................2030.3310100000000
.........................................ACAATGGTGGTAAGAGGC------CTTT.....................................................................................................................................................................2230.3310100000000
....ATCTATACTGGTGGCACCATTGGGAT............................................................................................................................................................................................................2630.3310100000000
...........CTGGTGGCACCATTGGGATGAC.........................................................................................................................................................................................................2230.3310000010000
.................................................................................................................................................................GAATC------TTTTAGTATTAGTGCC..............................................2130.3310100000000
..............................................................................................................................................................................................................AAGGTTCATCCGGAAGGAT.........1930.3310100000000
............................ATGACTCCCAACGACAATG...........................................................................................................................................................................................1930.3310100000000
..................CACCATTGGGATGACTCCCAA...................................................................................................................................................................................................2130.3310100000000
.....TCTATACTGGTGGCACCATTGGG..............................................................................................................................................................................................................2330.3310100000000
...CATCTATACTGGTGGCACCT...................................................................................................................................................................................................................2030.3310100000000
......................................................................................T---------------------CC-----------A------------GTTCAGTGTTGT---------GTTTTTGA.......................................................................2430.3310000000010
......CTATACTGGTGGCACCATTGGC..............................................................................................................................................................................................................2230.3310100000000
...CATCTATACTGGTGGCACCA...................................................................................................................................................................................................................2030.3310100000000
droPer2
TGTCATCTATACTGGTGGCACCATTGGGATGACTCCCAACGACAATGGTGGTAAGAGGC------CTCCAAGTGCATACGGATAGCT---------------------CC-----------A------------GTTCAGTGTTGT---------GTTTTTGAATC------TTTTAGTATTAGTGCCAGAACCGAAAGCTTTTGAAAGGTTCATCCGGAAGGATGTCAGTCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................AGAACCGAAAGCTTTTGAAAGGTT......................2440.251010000
....................................................................CAAGTGCATACGGATAGCT---------------------AT-----------.................................................................................................................2140.251000001
......CTATACTGGTGGCACCATTGGG..............................................................................................................................................................................................................2250.201010000
..................................................................................................................................................................................TATTAGTGCCAGAACCGAA.....................................1950.201010000
.........TACTGGTGGCACCATTGG...............................................................................................................................................................................................................1850.201010000
........ATACTGGTGGCACCATTGG...............................................................................................................................................................................................................1950.201010000
.................................................................................................................................................................................GTATTAGTGCCAGAACCGAA.....................................2050.201010000
.................................................................................................................................................................................GTATTAGTGCCAGAACCGAAAGC..................................2350.201010000
....ATCTATACTGGTGGCACCATTGG...............................................................................................................................................................................................................2350.201010000
droWil2
GACCATCTATACTGGCGGAACAATTGGCATGACTTTGAATGAGAATGGCGGTAAGTTAT------TTATAA-----TTATGATTA--------CTCTGAATAATAGTTCC-----------A--------------TAAATAATAT---------ACATACATATG------TGTTAGTGCTGGCCCCTGTTCCCGGACAATTTGAGCCAAGAATCCGTGAGGATATGAATTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................TGAGCCAAGAATCCGTGAGGA..........2112.00200200
...........CTGGCGGAACAATTGGCATGA..........................................................................................................................................................................................................2112.00202000
.........................GGCATGACTTTGAATGAG...............................................................................................................................................................................................1812.00202000
.......................................................................................................................................................................................................AATTTGAGCCAAGAATCCGTGAGGA..........2512.00200200
.......................................................................................................................................................................................................AATTTGAGCCAAGAATCCGTGAGG...........2411.00100100
................GGAACAATTGGCATGACTT.......................................................................................................................................................................................................1911.00100100
..............................................................................................................................................................................................TTCCCGGACAATTTGAGCCAAGA.....................2311.00101000
........................................................................................................................................................................................................ATTTGAGCCAAGAATCCGTGAGGAT.........2511.00100100
.....................AATTGGCATGACTTTGAATGAGAATGG..........................................................................................................................................................................................2711.00100100
.....................................................................................................................................................................................................ACAATTTGAGCCAAGAATCCGTGA.............2411.00100100
............................................................................................................................................................................................................GAGCCAAGAATCCGTGAGG...........1911.00100100
........ATACTGGCGGAACAATTGGCAT............................................................................................................................................................................................................2211.00101000
..CCATCTATACTGGCGGAACAATTGGC..............................................................................................................................................................................................................2611.00101000
...CATCTATACTGGCGGAAC.....................................................................................................................................................................................................................1811.00101000
............TGGCGGAACAATTGGCATGACTT.......................................................................................................................................................................................................2311.00101000
................................CTTTGAATGAGAATGGCG........................................................................................................................................................................................1811.00100010
.......................................................................................................................................................................................................AATTTGAGCCAAGAATCCGT...............2011.00100100
......................................................................................................................................................................................................CAATTTGAGCCAAGAATCCGTGAGGA..........2611.00100100
................................................................................................................................................................................................CCCGGACAATTTGAGCCAAGAATC..................2411.00110000
................................CTTTGAATGAGAATGGCGTGC.....................................................................................................................................................................................2140.25100100
.........................................................................................................................................AAATAATAT---------ACATACATATG------T.............................................................21100.10101000
droVir3
AGTCATCTACACGGGCGGCACCATCGGCATGATGCGCAACGAGCGACACGGTGGGTGCA------CCCACTCCC------CATCTAC---------------------CT-----------A------------AT-C----CCGCT-CTAAT--CCCGCTCTCTC------TTGCAGTGTTGGCGCCCATACCGAACGCCCTGGTCCGGCTCATACGCAAATATCCCAATATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................GGCACCATCGGCATGATGCGCAAC..................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.GTCATCTACACGGGCGGC.......................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
................GGCACCATCGGCATGATGCGC.....................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
droMoj3
TGTCATCTACACTGGCGGTTGCATTGGCATGATGCGGATGGAAGACGGGTGTAAGTGTAATATATCC-------------AATAGAT---------------------TT-----------A------------AACA----ATATTTAAAAA--GGCTCGTTTGTCGT------CAGCTTTGCAAAACGTTAGCGGAGAACTCATTAAACGACTGCGCGAAGATACCAGCTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TGTCATTTATACGGGCGGCACCATTGGCATGATGCGCAACGAGCGCAACGGTATTGCAA------TC-------------ATTCAGCTACCCCTCTCATCTCCCATCTCTCCTCCATCATTC--TC--------ATCT----CTCTT-CTTTTCCACCCCCGCCTT------TTATAGTGCTTGCGCCGATTCCGAAAGCTTTGGTGCGTCTCATCCGTAAATATCCAAATATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droAna3
TGTCATCTTCGTGGGAGGAACAATTGGAATGACAAGAAATGAAAAAGGAGGTGAGTGTA------GTTG-----TATACCGATCT--------TATCAA--------------------------------------C----TAATA-GTGAT--CATTAATCCTTAAT------CAGAATTGGTTTGTGTACCCAAAATTTTTTGTCAACGGCTTAACGAATTCCCAACCTG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TGTCATCTTCGTGGGAGGAACAATTGGAATGATAAGAAATGAAAACGGAGGTGGGTGAA------GTGG-----TATACCGATCT--------TATCAACTAATAG------------------------------------TGAT---------TCTTATTCCTC------ACTCAGATTTAGTTTGTGTACCCAACATTTTTTGTAAACGGCTCACCGAATACCCGACCTG-SizeHit CountTotal NormTotal
No Reads
droKik1
TGTGATCTACGTGGGTGGGGCAATTGGAATGCTGCGCGACGATAACGGGGGTGGGTAGA------CAATACAAA------GATTAGC---------------------CT-----------A------------GTCC----CAGTA-CCAAA--CGTTCACC----GTCCAATCCAGAGCTGGCTAGCGAACCCAATGTGCTCGCAACTCGCTTCCAAGAGTGTCCCAGCTGCSizeHit CountTotal NormTotal
No Reads
droFic1
-GTCATATACACGGGCGGAACCATCGGAATGGTGCGCAACGACCGGAACGGTGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGTCATCTACGTGGGCGGCACCATTGGAATGATGCGCAACGACTCGGGAGGTTTGTGAT------TC-------------GTATCCT---------------------CT-----------ATGGTATAGGTATGTGT----ATGTA-CTTAT--CCCTTAAATTCCAT------TAGTTCTGCACACCGTGCCCGGGATGTTGGCTGAGCGGCTCCACGAAATTCCCAGCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
-GTCATCTACACGGGCGGAACCATCGGGATGGTGCGCAACGAACGGAATGGTAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGTCATCTACGTGGGTGGAACAATCGGAATGATCCGCAACGAGTCCGGCGGTGGGTGAA------TC-------------AGTAGCT---------------------TT-----------A--ATATC-----GATC----TTTCT-CTAAA--CCCTTGTCTTCCAT------TAGTACTGCACACCGTGCCGAATTTGTTGGCCGAGCGCCTCCATGAGTTTTCCAGCTGTSizeHit CountTotal NormTotal
No Reads
droTak1
TGTCATCTACGTGGGAGGAACTATCGGAATGATCCGCAATGAGTCGGGAGGTGGGTGAA------TC-------------GATTGCT---------------------TT-----------A------------AACT----CTTTTACAATC--CCCTCCTCTTCCAT------TAGTACTGCAAACCGTGCCGAAGATGTTGGCTGAGCGGCTCCAGGAGTTTCCCAGCTGCSizeHit CountTotal NormTotal
No Reads
droEug1
TGTTATATACGTTGGCGGAACTATTGGAATGATCCGTGACGAGTCTGGAGGTGGGTGAA------TC-------------AGTATAT---------------------CT-----------T------------ATTT----GTGTA-TTAAT--TTCTTGCTTTCCTT------TAGTACTGCGTCCTGAGCATAATGTATTGGCCAAGCGCATCTGCGATTTTCCGAGCTGCSizeHit CountTotal NormTotal
No Reads
dm3
TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------AATGGCT---------------------CT-----------T------------GTCC----GTGTA-CTAAT--CAATTGTTTCTCAT------CAGTACTGCACACCGCGCCCAAGGTGCTGGCTCGGCAGCTTCAAGAGTTTCCCAGCTG-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................ATCCGCAACGAGTCCGGAGGT......................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AGCTTCAAGAGTTTCCCA.....1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......CTACGTGGGTGGAACCATCGGAATG...........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................GCGCCCAAGGTGCTGGCTC..........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GATCCGCAACGAGTCCGGA.........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CGCGCCCAAGGTGCTGGCTCG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.GTCATCTACGTGGGTGGAACC....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
....ATCTACGTGGGTGGAACC....................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATGATCCGCAACGAGTCCGGAGGTG.....................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AACCATCGGAATGATCCGCAAC..................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------GATGGCT---------------------CT-----------A------------GTCC----TTGTA-CCAAT--CAATTGTTTCCCAT------CAGCACTGCACACCGAGCCCAAGGTGCTGGCTCGGCAGCTCCAAGAGTTTCCCAGCTG-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------GATGGGT---------------------CT-----------A------------GTCC----TTGTA-CCAAT--CAATCGTTTCCCAT------CAGTACTGCACACCGAGCCCAAGGTGCTGGCTCGGCAGCTTCAAGAGTTTCCCAGCTG-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................AACGAGTCCGGAGGTGGGTA.................................................................................................................................................................................2011.0010100
droYak3
TGTCATCTACGTTGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGGGTATA------TC-------------GATGGCT---------------------CT-----------A------------GTCT----TTCTA-CCAAT--CACCTCTTTTCCAT------TAGTACTGCACGCCGTACCCATGGTGCTGGGTCAGCAGCTTCAGGAGTTTCCCAGCTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TGTCATCTACGTGGGTGGAACCATCGGAATGATCCGCAACGAGTCCGGAGGTGAGTATA------TC-------------GTTGGCT---------------------CT-----------A------------GGCT----GTGTA-CCTAT--AACCTGTTTGCCAT------TAGTACTGCACACCGTGCCCAAGGTGCTGGGTGAGCAGCTTCAAGAGTTTCCCAGCTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:53 PM