ID:

dps-mir-981

 Coordinate:

XL_group1a:4258928-4259016 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.0 -41.0 -41.0

Flybase annnotation

utr3 [utr3_minus_9718]

No Repeatable elements found

Sense Strand Reads

TAGAGGTTTCGAAGCGGTTTCTCCCCATCTACGAATATCTATGCGAAAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATAAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAGAAACAACAAATGCAACAAAAAACTGTGACAAAAAATAAGATAAATGTATG

************************************************..(((((((....(((((((((((((.(((((((((((((((......)).))).)))))))))).))))))))))).))...)))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total M062

head

 M040

female body

 GSM444067

head

 M059

embryo

 GSM343916

embryo

 SRR902012

CNS imaginal disc

 V112

male body		 M022

male body		 SRR902011

testis
.........................................................................................................TTCGTTGTCGACGAAACCTGC............................................................... 21 0 1 11733.00 11733 7746 1527 1870 144 165 268 11 2 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCA.............................................................. 22 0 1 9261.00 9261 5098 2046 789 909 194 219 3 2 1
.........................................................................................................TTCGTTGTCGACGAAACCTG................................................................ 20 0 1 2235.00 2235 728 1263 229 6 0 4 0 5 0
.........................................................................................................TGCGTTGTCGACGAAACCTGC............................................................... 21 1 1 1156.00 1156 1122 0 3 31 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 876.00 876 761 0 1 114 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCAA............................................................. 23 1 1 430.00 430 228 86 61 37 5 12 0 1 0
.........................................................................................................TTCGTTGTCGACGAAACCT................................................................. 19 0 1 407.00 407 311 68 24 2 0 0 0 2 0
.........................................................................................................TTAGTTGTCGACGAAACCTGC............................................................... 21 1 1 374.00 374 357 0 7 8 2 0 0 0 0
...............................................................CGGGTTTCGTTAACAGCGGGCT........................................................................................................ 22 0 1 291.00 291 19 2 58 59 148 0 4 1 0
.........................................................................................................TTCGTTGTCGACGAAACC.................................................................. 18 0 1 285.00 285 275 1 0 9 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 267.00 267 207 0 3 57 0 0 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCTGCA.............................................................. 21 0 1 185.00 185 8 176 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGT............................................................... 21 1 1 157.00 157 28 15 113 0 0 0 1 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCAT............................................................. 23 0 1 154.00 154 109 18 24 0 1 2 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCTGC............................................................... 20 0 1 143.00 143 2 138 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCT.............................................................. 22 1 1 140.00 140 100 12 18 4 4 2 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCC.............................................................. 22 1 1 129.00 129 99 4 19 3 4 0 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCTG................................................................ 19 0 1 125.00 125 1 124 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCAC............................................................. 23 1 1 112.00 112 94 7 4 7 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTG................................................................ 20 1 1 103.00 103 101 0 0 2 0 0 0 0 0
.........................................................................................................TTCTTTGTCGACGAAACCTGC............................................................... 21 1 1 97.00 97 94 0 0 2 0 0 1 0 0
.........................................................................................................TTCGTTGTCGCCGAAACCTGC............................................................... 21 1 1 53.00 53 47 0 3 3 0 0 0 0 0
.........................................................................................................TTCTTTGTCGACGAAACCTGCA.............................................................. 22 1 1 49.00 49 44 0 0 5 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCAA............................................................. 23 2 1 47.00 47 41 0 0 6 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCC................................................................. 19 1 1 46.00 46 46 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACC.................................................................. 18 1 1 46.00 46 43 0 0 3 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGTA.............................................................. 22 1 1 44.00 44 37 0 2 5 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTAC............................................................... 21 1 1 43.00 43 43 0 0 0 0 0 0 0 0
........................................................................................................CTTCGTTGTCGACGAAACCTGC............................................................... 22 1 1 43.00 43 40 3 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGCCGAAACCTGCA.............................................................. 22 1 1 42.00 42 34 0 0 8 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCT................................................................. 19 1 1 38.00 38 38 0 0 0 0 0 0 0 0
.........................................................................................................TGCTTTGTCGACGAAACCTGC............................................................... 21 2 1 37.00 37 37 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCTG................................................................ 20 1 1 34.00 34 31 0 3 0 0 0 0 0 0
........................................................................................................CTTCGTTGTCGACGAAACCTGCA.............................................................. 23 1 1 30.00 30 26 1 0 1 0 2 0 0 0
.........................................................................................................TTCGTGGTCGACGAAACCTGC............................................................... 21 1 1 28.00 28 26 0 1 1 0 0 0 0 0
...............................................................CGGGTTTCGTTAACAGCGGGC......................................................................................................... 21 0 1 27.00 27 3 0 7 2 13 2 0 0 0
.........................................................................................................TGAGTTGTCGACGAAACCTGC............................................................... 21 2 1 26.00 26 25 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACAAAACCTGC............................................................... 21 1 1 24.00 24 19 1 4 0 0 0 0 0 0
...............................................................CTGGTTTCGTTAACAGCGGGCT........................................................................................................ 22 1 1 23.00 23 6 0 0 17 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCT.............................................................. 22 2 1 23.00 23 19 0 0 4 0 0 0 0 0
...............................................................CGGGTTTCGTTAACAGCGGGCC........................................................................................................ 22 1 1 23.00 23 7 0 0 16 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCAT............................................................. 23 1 1 22.00 22 22 0 0 0 0 0 0 0 0
.........................................................................................................TGCTTTGTCGACGAAACCTGCA.............................................................. 22 2 1 21.00 21 19 0 0 2 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTTC............................................................... 21 1 1 21.00 21 19 0 1 1 0 0 0 0 0
.........................................................................................................TTCGTTTTCGACGAAACCTGCA.............................................................. 22 1 1 20.00 20 14 0 0 6 0 0 0 0 0
.........................................................................................................TGAGTTGTCGACGAAACCTGCA.............................................................. 22 2 1 19.00 19 18 0 0 1 0 0 0 0 0
.........................................................................................................CTCGTTGTCGACGAAACCTGC............................................................... 21 1 1 18.00 18 15 0 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTAGACGAAACCTGCA.............................................................. 22 1 1 18.00 18 15 0 0 3 0 0 0 0 0
.........................................................................................................TTCGTGGTCGACGAAACCTGCA.............................................................. 22 1 1 18.00 18 15 0 1 2 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGA............................................................... 21 1 1 18.00 18 4 4 10 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCAG............................................................. 23 1 1 18.00 18 3 2 3 2 0 8 0 0 0
.........................................................................................................TTCGTTTTCGACGAAACCTGC............................................................... 21 1 1 17.00 17 16 1 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGAAGAAACCTGCA.............................................................. 22 1 1 17.00 17 11 1 0 5 0 0 0 0 0
.........................................................................................................GTCGTTGTCGACGAAACCTGC............................................................... 21 1 1 16.00 16 14 0 1 1 0 0 0 0 0
.........................................................................................................TTCGTTGCCGACGAAACCTGC............................................................... 21 1 1 16.00 16 11 1 3 0 0 0 0 1 0
.........................................................................................................TTCGTTGTCGACGAAACCTTCA.............................................................. 22 1 1 15.00 15 11 2 0 1 1 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTT................................................................ 20 1 1 15.00 15 2 10 3 0 0 0 0 0 0
.........................................................................................................ATCGTTGTCGACGAAACCTGC............................................................... 21 1 1 15.00 15 14 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAATCCTGC............................................................... 21 1 1 15.00 15 15 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGACACCTGC............................................................... 21 1 1 14.00 14 10 0 3 0 1 0 0 0 0
.........................................................................................................TTCGTTGACGACGAAACCTGC............................................................... 21 1 1 14.00 14 12 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGG............................................................... 21 1 1 13.00 13 10 1 0 0 2 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTCC............................................................... 21 1 1 13.00 13 7 0 6 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCTGCAA............................................................. 23 2 1 13.00 13 12 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTAGACGAAACCTGC............................................................... 21 1 1 13.00 13 9 0 2 1 1 0 0 0 0
.........................................................................................................TTCGATGTCGACGAAACCTGC............................................................... 21 1 1 13.00 13 10 0 1 1 1 0 0 0 0
.........................................................................................................CTCGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 13.00 13 10 0 0 2 1 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCAC............................................................. 23 2 1 13.00 13 11 0 0 2 0 0 0 0 0
.........................................................................................................TACGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 13.00 13 12 0 0 1 0 0 0 0 0
.........................................................................................................TTGGTTGTCGACGAAACCTGC............................................................... 21 1 1 13.00 13 9 0 4 0 0 0 0 0 0
.........................................................................................................GTCGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 13.00 13 12 0 0 1 0 0 0 0 0
.........................................................................................................TTCGCTGTCGACGAAACCTGC............................................................... 21 1 1 13.00 13 11 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCGGC............................................................... 21 1 1 13.00 13 3 1 8 0 1 0 0 0 0
...............................................................CGGGTTTCGTTAACAGCGGG.......................................................................................................... 20 0 1 12.00 12 2 0 9 0 1 0 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCTGCAA............................................................. 22 1 1 12.00 12 1 10 1 0 0 0 0 0 0
.........................................................................................................TACGTTGTCGACGAAACCTGC............................................................... 21 1 1 11.00 11 9 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGACGACGAAACCTGCA.............................................................. 22 1 1 11.00 11 9 0 1 0 1 0 0 0 0
.........................................................................................................TTCGTTGTCGAAGAAACCTGC............................................................... 21 1 1 11.00 11 9 1 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCCGC............................................................... 21 1 1 10.00 10 2 0 8 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAGACCTGC............................................................... 21 1 1 10.00 10 5 1 4 0 0 0 0 0 0
...........................................................................................................CGTTGTCGACGAAACCTGCA.............................................................. 20 0 1 10.00 10 0 9 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGACACCTGCA.............................................................. 22 1 1 10.00 10 5 0 2 0 3 0 0 0 0
...........................................................................................................CGTTGTCGACGAAACCTGC............................................................... 19 0 1 10.00 10 3 6 0 0 0 1 0 0 0
.........................................................................................................TCCGTTGTCGACGAAACCTGC............................................................... 21 1 1 10.00 10 8 1 1 0 0 0 0 0 0
.........................................................................................................TTTGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 10.00 10 7 0 2 1 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACC.................................................................. 18 1 1 10.00 10 10 0 0 0 0 0 0 0 0
.........................................................................................................TTCGCTGTCGACGAAACCTGCA.............................................................. 22 1 1 9.00 9 5 1 2 1 0 0 0 0 0
...............................................................CTGGTTTCGTTAACAGCGGGCC........................................................................................................ 22 2 1 9.00 9 3 0 0 6 0 0 0 0 0
.........................................................................................................TTTGTTGTCGACGAAACCTGC............................................................... 21 1 1 9.00 9 8 0 1 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTAC............................................................... 21 2 1 9.00 9 8 0 0 1 0 0 0 0 0
.........................................................................................................ATCGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 9.00 9 6 2 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCAACGAAACCTGC............................................................... 21 1 1 9.00 9 7 0 1 0 0 1 0 0 0
.........................................................................................................TTCGATGTCGACGAAACCTGCA.............................................................. 22 1 1 9.00 9 4 0 2 1 2 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTTC............................................................... 21 2 1 9.00 9 9 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCTGCT.............................................................. 22 2 1 9.00 9 9 0 0 0 0 0 0 0 0
.........................................................................................................TTCGGTGTCGACGAAACCTGC............................................................... 21 1 1 9.00 9 6 0 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAGCCTGC............................................................... 21 1 1 8.00 8 5 2 1 0 0 0 0 0 0
.........................................................................................................TCCGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 8.00 8 6 0 0 2 0 0 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCT................................................................. 18 0 1 8.00 8 0 8 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACAAAACCTGCA.............................................................. 22 1 1 8.00 8 6 0 1 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAATCCTGCA.............................................................. 22 1 1 8.00 8 7 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGCCGACGAAACCTGCA.............................................................. 22 1 1 8.00 8 7 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGGCGAAACCTGC............................................................... 21 1 1 8.00 8 4 2 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCATT............................................................ 24 1 1 7.00 7 4 1 0 1 0 1 0 0 0
.........................................................................................................TTCGTTGTCAACGAAACCTGCA.............................................................. 22 1 1 7.00 7 6 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGATGAAACCTGC............................................................... 21 1 1 7.00 7 5 0 1 0 0 1 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCG.............................................................. 22 1 1 7.00 7 1 4 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACTAAACCTGC............................................................... 21 1 1 7.00 7 1 0 6 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCTGCC.............................................................. 22 2 1 7.00 7 6 0 0 1 0 0 0 0 0
............................................................................................................GTTGTCGACGAAACCTGC............................................................... 18 0 1 7.00 7 1 2 2 0 2 0 0 0 0
.........................................................................................................TTCGTTGTCGATGAAACCTGCA.............................................................. 22 1 1 7.00 7 3 1 1 2 0 0 0 0 0
.........................................................................................................TTGGTTGTCGACGAAACCTGCA.............................................................. 22 1 1 7.00 7 4 0 2 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCTACGAAACCTGCA.............................................................. 22 1 1 7.00 7 4 0 2 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCTT............................................................. 23 1 1 6.00 6 5 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTTGACGAAACCTGCA.............................................................. 22 1 1 6.00 6 4 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGTT.............................................................. 22 2 1 6.00 6 1 2 3 0 0 0 0 0 0
.....................................................................................................GATCTTCGTTGTCGACGAAACCTGCA.............................................................. 26 3 1 6.00 6 5 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTCGTCGACGAAACCTGCA.............................................................. 22 1 1 6.00 6 2 1 1 2 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACCAAACCTGC............................................................... 21 1 1 6.00 6 4 0 2 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCTGCAC............................................................. 23 2 1 6.00 6 5 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTACA.............................................................. 22 1 1 6.00 6 2 0 2 1 1 0 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCT................................................................. 19 1 1 6.00 6 6 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACCAAACCTG................................................................ 20 1 1 6.00 6 3 0 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAGCCTGCA.............................................................. 22 1 1 6.00 6 5 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAACCCTGCA.............................................................. 22 1 1 6.00 6 0 0 4 0 2 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAATCCTGC............................................................... 21 2 1 6.00 6 5 0 0 1 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCC.............................................................. 22 2 2 5.50 11 10 0 0 1 0 0 0 0 0
...............................................................CTGGTTTCGTTAACAGCGGGC......................................................................................................... 21 1 1 5.00 5 0 0 0 5 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCC................................................................. 19 2 1 5.00 5 5 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGCCGAAACCTGC............................................................... 21 2 1 5.00 5 5 0 0 0 0 0 0 0 0
......................................................................................................ATCTTCGTTGTCGACGAAACCTGCA.............................................................. 25 2 1 5.00 5 3 0 0 2 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCAAA............................................................ 24 2 1 5.00 5 3 0 1 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGCAACCTGC............................................................... 21 1 1 5.00 5 0 0 5 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCTACGAAACCTGC............................................................... 21 1 1 5.00 5 4 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCCA............................................................. 23 2 1 5.00 5 3 1 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAAACTGCA.............................................................. 22 1 1 5.00 5 2 1 1 0 1 0 0 0 0
.........................................................................................................TTCTTTGTCGACGAAACCTG................................................................ 20 1 1 5.00 5 5 0 0 0 0 0 0 0 0
.........................................................................................................TTCGGTGTCGACGAAACCTGCA.............................................................. 22 1 1 5.00 5 3 1 1 0 0 0 0 0 0
.....................................................................................................GATCTTCGTTGTCGACGAAACCTGC............................................................... 25 3 1 5.00 5 5 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTGGACGAAACCTGC............................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGCCGAAACCTGCA.............................................................. 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0
............................................................................................................GTTGTCGACGAAACCTGCA.............................................................. 19 0 1 5.00 5 1 0 0 0 1 3 0 0 0
.........................................................................................................TTAGTTGTCGACGAAACCTGCAT............................................................. 23 1 1 5.00 5 5 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTTGACGAAACCTGC............................................................... 21 1 1 5.00 5 3 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACATGC............................................................... 21 1 1 5.00 5 0 0 5 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGCCGAAACCTG................................................................ 20 1 1 5.00 5 4 0 1 0 0 0 0 0 0
.........................................................................................................TGCGTTGCCGACGAAACCTGC............................................................... 21 2 1 5.00 5 5 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAGACCTGCA.............................................................. 22 1 1 4.00 4 2 1 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGTCGAAACCTGC............................................................... 21 1 1 4.00 4 2 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTTATCGACGAAACCTGCA.............................................................. 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGGAACCTGC............................................................... 21 1 1 4.00 4 3 0 1 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGACACCTGC............................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAGCCTG................................................................ 20 1 1 4.00 4 2 1 1 0 0 0 0 0 0
.........................................................................................................TGCGTTTTCGACGAAACCTGCA.............................................................. 22 2 1 4.00 4 2 0 0 2 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCCGCA.............................................................. 22 1 1 4.00 4 1 0 2 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGAAGACACCTGCA.............................................................. 22 2 1 4.00 4 3 0 0 1 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGT............................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0 0
...............................................................CAGGTTTCGTTAGCAACGGGCT........................................................................................................ 22 3 1 4.00 4 0 0 0 3 1 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAATCCTG................................................................ 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TTCATTGTCGACGAAACCTGC............................................................... 21 1 1 4.00 4 3 0 1 0 0 0 0 0 0
.......................................................................................................TCTTCGTTGTCGACGAAACCTGC............................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCCG................................................................ 20 1 1 4.00 4 0 2 2 0 0 0 0 0 0
.........................................................................................................TGCGTTGCCGACGAAACCTGCA.............................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TTCGCTGTCGACGAAACCTG................................................................ 20 1 1 4.00 4 3 0 1 0 0 0 0 0 0
........................................................................................................CGTCGTTGTCGACGAAACCTGC............................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTTTCGACGAAACCTGC............................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGGA.............................................................. 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAATCCTGCA.............................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGCCGAAACCTGCA.............................................................. 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
........................................................................................................CTCCGTTGTCGACGAAACCTGC............................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTCTCGACGAAACCTGCA.............................................................. 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGGAACCTGCA.............................................................. 22 1 1 3.00 3 0 0 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACTTGC............................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTATCGACGAAACCTGC............................................................... 21 1 1 3.00 3 2 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCGGCA.............................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTAGACGAAACCTGCA.............................................................. 22 2 1 3.00 3 1 0 1 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGTAACCTGCA.............................................................. 22 1 1 3.00 3 0 0 2 0 1 0 0 0 0
...............................................................CGGGATTCGTTAACAGCGGGCT........................................................................................................ 22 1 1 3.00 3 0 0 0 0 3 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTCCA.............................................................. 22 1 1 3.00 3 2 0 0 0 0 0 1 0 0
.........................................................................................................TTCGTTGGCGACGAAACCTGCA.............................................................. 22 1 1 3.00 3 0 0 2 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAAGCTGC............................................................... 21 1 1 3.00 3 1 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTAGTCGACGAAACCTGC............................................................... 21 1 1 3.00 3 2 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAATCTGC............................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGCCGAAACCTGCAT............................................................. 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCTGT............................................................... 20 1 1 3.00 3 0 3 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGACGACGAAACCTG................................................................ 20 1 1 3.00 3 2 1 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCATTT........................................................... 25 3 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................TGCTTTGTCGACGAAACCTGCAA............................................................. 23 3 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGACACCTGCA.............................................................. 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTA................................................................ 20 1 1 3.00 3 0 1 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGGCGACGAAACCTGC............................................................... 21 1 1 3.00 3 1 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTGGTCGACGAAACCGGC............................................................... 21 2 1 3.00 3 0 0 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAACCCTGC............................................................... 21 1 1 3.00 3 0 0 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGTAACCTGC............................................................... 21 1 1 3.00 3 2 0 0 0 1 0 0 0 0
.........................................................................................................TTCGTTGTCGCCGAAACCTGCAA............................................................. 23 2 1 3.00 3 2 0 0 1 0 0 0 0 0
.........................................................................................................TTCTTTGTCGACGAAACCTGCAT............................................................. 23 1 1 3.00 3 2 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACTTGCA.............................................................. 22 1 1 3.00 3 2 0 0 1 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGTA.............................................................. 22 2 1 3.00 3 2 0 0 1 0 0 0 0 0
.........................................................................................................TTCGGTGGCGACGAAACCTGC............................................................... 21 2 1 3.00 3 0 0 3 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCCACGAAACCTGCA.............................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................CGTCGTTGTCGACGAAACCTGCA.............................................................. 23 2 1 2.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................TGTGTTGTCGACGAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TGCGCTGTCGACGAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCTTTGTCGACAAAACCTGC............................................................... 21 2 1 2.00 2 1 0 1 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCGGCA.............................................................. 22 2 1 2.00 2 1 0 0 0 1 0 0 0 0
.........................................................................................................TTCGTTGTCGACGACACCTGCC.............................................................. 22 2 1 2.00 2 0 0 2 0 0 0 0 0 0
...........................................................................................................CGTTGTCGACGAAACCTG................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACTTGCA.............................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGCCGAAACCT................................................................. 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACCAAACCT................................................................. 19 1 1 2.00 2 0 0 2 0 0 0 0 0 0
.........................................................................................................TTTGTTGTCGACGAAACCTG................................................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTAGACGAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACATGCA.............................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0
................................................................GGGTTTCGTTAACAGCGGGCT........................................................................................................ 21 0 1 2.00 2 0 0 1 0 1 0 0 0 0
.........................................................................................................TTCGTTGTCGACGTAACCTGCAA............................................................. 23 2 1 2.00 2 1 0 0 0 1 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCCC............................................................. 23 2 1 2.00 2 1 1 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGG............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTAGACGAAACCTGC............................................................... 21 2 1 2.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAGACCTG................................................................ 20 1 1 2.00 2 1 1 0 0 0 0 0 0 0
.........................................................................................................TTCCTTGTCGACGAAACCTGC............................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0
...............................................................CGGGTTTCGTTCACAGCGGGCT........................................................................................................ 22 1 1 2.00 2 0 0 0 0 2 0 0 0 0
.........................................................................................................TTCATTGTCGACGAAACCTGCA.............................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................CTTCGTTGTCGACGAAACCTGCAA............................................................. 24 2 1 2.00 2 1 0 0 0 1 0 0 0 0
.........................................................................................................TGCGTTGACGACGAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................CGGGGTTCGTTAACAGCGGGCT........................................................................................................ 22 1 1 2.00 2 0 0 0 0 2 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGAC.............................................................. 22 2 1 2.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAACCCTG................................................................ 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCTGCC.............................................................. 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGAAGAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................CGGGTTTCGTTACCAGCGGGCT........................................................................................................ 22 1 1 2.00 2 0 0 0 0 2 0 0 0 0
.........................................................................................................TTCGGTGTCGACGAAACCTG................................................................ 20 1 1 2.00 2 1 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGAGGAAACCTGCA.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................TGGGTTTCGTTAACAGCGGGCC........................................................................................................ 22 2 1 2.00 2 0 0 0 2 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTGCTTT............................................................ 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................CGGGTTTCGTTAAAAGCGGGCT........................................................................................................ 22 1 1 2.00 2 0 0 1 0 1 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCGGC............................................................... 21 2 1 2.00 2 0 0 2 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGTAACCTGCA.............................................................. 22 2 1 2.00 2 1 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTCGTCGACGAAACCTGC............................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCAGC............................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGACACCTG................................................................ 20 1 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................CGTTGTTGTCGACGAAACCTGCA.............................................................. 23 3 1 2.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACAAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAATCTGCA.............................................................. 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0
.........................................................................................................TGCGTTGTCGATGAAACCTGCA.............................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TCCGTTGTCGACGAAACCTG................................................................ 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGAAGACACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TGCGTTGTTGACGAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGACGACACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................CGGGTTTCGTTAACACCGGGCT........................................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCCACGAAACCTGC............................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGCCGAAACCTGC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGTCGCCGAAACCTG................................................................ 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGCAACCTGCA.............................................................. 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0
.........................................................................................................TTCGTTTTCGACGAAACCTGCAA............................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................CGGGTTTCGTTAACCGCGGGCT........................................................................................................ 22 1 1 2.00 2 0 0 1 0 1 0 0 0 0
..........................................................................................................TCGTTGTCGACGAAACCTGCAC............................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..........................................................................................................TCGTTTTCGACGAAACCTGC............................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
........................................................................................................CGCCGTTGTCGACGAAACCTGC............................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGGCGACGAAACCTGC............................................................... 21 2 1 2.00 2 0 0 2 0 0 0 0 0 0
...............................................................CGGGTTTCGTTAACAGCGG........................................................................................................... 19 0 1 2.00 2 0 0 1 0 0 0 1 0 0
...............................................................CGGGTTTCGTTAACAGCGGAC......................................................................................................... 21 1 1 2.00 2 0 0 0 2 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGACACCTTC............................................................... 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGCAACCTG................................................................ 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0
.........................................................................................................TGCGTGGTCGACGAAACCTGCA.............................................................. 22 2 1 2.00 2 0 0 1 1 0 0 0 0 0
.........................................................................................................TTCTTTGTCGACGAAACCTTCA.............................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TGCGCTGTCGACGAAACCTGCA.............................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGCCCAAACCTGC............................................................... 21 2 1 2.00 2 1 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGAAGACGAAACCTGCA.............................................................. 22 2 1 2.00 2 1 0 0 1 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTACA.............................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TGCTTTGTCGACGAAACCTGCT.............................................................. 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTTTCGACGAAACCTGCC.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................CGGGTTTCGGTATCAGCGGGCT........................................................................................................ 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................TTCGTTGTCGACTACACCTGCA.............................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................TGCGTTGTCGACAAAACCTGCA.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTATCGACGCAACCTGC............................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................................................................CATTCGTTGTCGACGAAACCTGC............................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAAACTTC............................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTACCGACGAAACCTGC............................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTC................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................CGGGTTTTGTTAACAGCGGGC......................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAGACCTGCAA............................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................TGCGTTGTCGACGAAACCTGCAG............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGCCAAAACCTGC............................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACAAAACCTGCT.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGTCGAAACCCGC............................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCGCC............................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACGTGCA.............................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................CGGGTCTCGTTAACAGAGGCCT........................................................................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................CGGGTTTCGTTAACAGCAGGC......................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TTCTTTGTCGACGACACCTG................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGATGTCGACAAAACCTGC............................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................TTCGTGGTCGACGAAACCTACA.............................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................GGGTTTCGTGAACCGCGGGAT........................................................................................................ 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................TGCGTTATCGACGAAACCTGC............................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGCCGAAACC.................................................................. 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACGAAACCTACAA............................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................TTCTTTGTCGACGAAACCTGCAA............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTGTCGACAAAACCTG................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTAGTTGACGACGAAACCTGCA.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTCGTTTTCGACGAAACCTACA.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................TTTGTTGCCGACGAAACCTGC............................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

ATCTCCAAAGCTTCGCCAAAGAGGGGTAGATGCTTATAGATACGCTTTTTAGGTGTAACTTTAGCCCAAAGCAATTGTCGCCCGACAATACTTATTTAGTTGTTCAAGCAACAGCTGCTTTGGACGTACGACACACCTCTTTGTTGTTTACGTTGTTTTTTGACACTGTTTTTTATTCTATTTACATAC

************************************************..(((((((....(((((((((((((.(((((((((((((((......)).))).)))))))))).))))))))))).))...)))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total V112

male body		 M022

male body		 M040

female body
........................GGTAGATGGTTAGAGAGACGCTT.............................................................................................................................................. 23 3 1 1.00 1 1 0 0
...............................................................................................................CAACTGCTTGAGACGTACGAC......................................................... 21 3 3 0.33 1 0 1 0
...................AGAGGGGTAGAAGCGTAT........................................................................................................................................................ 18 2 10 0.10 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XL_group1a:4258878-4259066 - dps-mir-981 Known_mirbase TAGAGGTTTCGAAGCGGTTTCTCCCCATCTACGAATATCTA--------------------------------------------------------------TGCGA------AAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAAT--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAGAAACAACAAATGCAACAAAAAA--CTGTGACA--------------------AAAAATAAGATAAATGTATG
droPer2 scaffold_11:835012-835262 - dpe_26 confident TAGAGGTTTCGAAGCGGTTTCTCCCCATCTACGAATATCTATCTATACCCGCGTTAAAATCCAAGTTGGATATGGAAACCAAATATTTATTTCGAATCTTTGATGCGA------AAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAAT--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAGAAACAACAAATGCAAAAAAAAA--CTGTGACA--------------------AAAAATAAGATAAATGTATG
droWil2 scf2_1100000004909:4683232-4683383 + dwi_23 confident --------------------------------------------------------------------------------------------------------------------AATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGA---CAAA------------CAG--CTCTTTTGATTGTGTGAAAATATCAATGAAAAATAAAACCAACGTA--
droVir3 scaffold_12942:51501-51609 + dvi-mir-981 Known_mirbase -----------------------------------------------------------------------------------------------------------A------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAGTGGCAACAAGTACCATA-------------------------------------------------------
droMoj3 scaffold_6328:4397469-4397611 + dmo_26 confident A---------------------------------ATATCTG-------------------------------------------------------------TGGATAAAAATAGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATT--------AAAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGTGGAGAGGCAACCATTCTATTGAAGATGACTGCGA------------------------------------------
droGri2 scaffold_14853:795296-795394 + dgr_59 candidate-rescued ----------------------------------------------------------------------------------------------------------------------TCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAGAGTCAACGAGT-------------------------------------------------------------
droAna3 scaffold_12929:1586944-1587043 + dan_9 confident -----------------------------------------------------------------------------------------------------------A-------AAGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCG--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAATAACAAC-----------------------------------------------------------------
droBip1 scf7180000396543:52366-52472 + T---------------------------------A--------------------------------------------------------------------TGTGA------ATTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCG--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAATGACAAC-----------------------------------------------------------------
droKik1 scf7180000302398:392975-393148 + TAGTGTTTTCCAATTG----CTTTTCATGGCTAAATGTCTT-------------------------------------------------------------A----G------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAA--------------TTTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAAACAACGTTC--A----AAAT--TTGTGAAA-----------A----ATTAGAGAATTAGACAAATAGAT-
droFic1 scf7180000453253:126076-126211 - -----------------------------------------------------------------------------------------------------------A------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTG--------TTATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAACTCAACATT----ACAAGCAG--CCGTTACGATC------------------TAATTAAAATAAA------
droEle1 scf7180000491043:308392-308503 + A----------------------------------TA-CTA-------------------------------------------------------------ATCAAA------GAAGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAAAGTCAACA----------------------------------------------------------------
droRho1 scf7180000779976:18410-18510 - -----------------------------------------------------------------------------------------------------------A-------AAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC---------AATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAAAATCAACAA---------------------------------------------------------------
droBia1 scf7180000301760:4274666-4274766 - -----------------------------------------------------------------------------------------------------------A------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTC--------TTTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------
droTak1 scf7180000415704:1276939-1277052 - A---------------------------------ATACCTA-------------------------------------------------------------AGAACA------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTAC--------TTTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------
droEug1 scf7180000408994:414299-414395 - ---------------------------------------------------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTAC--------TTTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------
dm3 chrX:1682890-1682999 - dme-mir-981 Known_mirbase A-------------------------------------CTT-------------------------------------------------------------AGGAGA------AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------
droSim2 x:1541025-1541125 - dsi-mir-981 Known_mirbase -----------------------------------------------------------------------------------------------------------A------AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------
droSec2 scaffold_10:1477765-1477865 - dse_18 confident -----------------------------------------------------------------------------------------------------------A------AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------
droYak3 X:1528074-1528178 - dya_89 confident T-------------------------------------------------------------------------------------------------------GCAA------AGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------
droEre2 scaffold_4644:1660965-1661069 - der_13 confident T-------------------------------------------------------------------------------------------------------GCAA------AGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TAGAGGTTTCGAAGCGGTTTCTCCCCATCTACGAATATCTA--------------------------------------------------------------TGCGA------AAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAAT--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAGAAACAACAAATGCAACAAAAAA--CTGTGACA--------------------AAAAATAAGATAAATGTATGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................21111733.001173321527144774616518701100268
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2219261.009261220469095098194789301219
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................2012235.00223551263672802290004
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231430.004301863722856100012
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................191407.0040726823110240000
...................................................................................................................................CGGGTTTCGTTAACAGCGGGCT......................................................................................................................................221291.00291125919148584000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................181285.00285019275000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................211185.00185017608010000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................211157.0015701502801131000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................231154.0015401801091240002
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................201143.00143013802030000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................221140.0014001241004180002
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................221129.00129043994190000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................191125.00125012401000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................231112.0011207794040000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCC.......................................................................................19146.004600046000000
...................................................................................................................................CGGGTTTCGTTAACAGCGGGC.......................................................................................................................................21127.002700231370002
...................................................................................................................................CGGGTTTCGTTAACAGCGGGCC......................................................................................................................................22123.002300167000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21118.001804040100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................23118.00180223030008
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................20115.001501002030000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................21113.001301010200000
...................................................................................................................................CGGGTTTCGTTAACAGCGGG........................................................................................................................................20112.00120002190000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................22112.001201001010000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................20110.00100900010000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................19110.00100603000001
......................................................................................................................................................................................TCGTTGTCGACGAAACCT.......................................................................................1818.0080800000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2417.0070114000001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................2217.0070401020000
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................1817.0070201220000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTT....................................................................................2216.0060201030000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................2415.0050013010000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA...................................................................................2315.0050103010000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................1915.0050001100003
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGT.....................................................................................2013.0030300000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTA......................................................................................2013.0030100020000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTG......................................................................................1812.0020200000000
....................................................................................................................................GGGTTTCGTTAACAGCGGGCT......................................................................................................................................2112.0020000110000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCC...................................................................................2312.0020101000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGAC....................................................................................2212.0020011000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCC....................................................................................2112.0020200000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAC...................................................................................2212.0020200000000
...................................................................................................................................CGGGTTTCGTTAACAGCGG.........................................................................................................................................1912.0020000011000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2011.0010001000000
droPer2
TAGAGGTTTCGAAGCGGTTTCTCCCCATCTACGAATATCTATCTATACCCGCGTTAAAATCCAAGTTGGATATGGAAACCAAATATTTATTTCGAATCTTTGATGCGA------AAAATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAAT--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAGAAACAACAAATGCAAAAAAAAA--CTGTGACA--------------------AAAAATAAGATAAATGTATGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................2113596.0035962637411113461630109
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2211470.001470126287505164883
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................201616.006162426011341970
...................................................................................................................................CGGGTTTCGTTAACAGCGGGCT......................................................................................................................................221342.0034214112475983
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................211202.00202090351517
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231114.001142515030440
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................19147.004712209150
...................................................................................................................................CGGGTTTCGTTAACAGCGGGC.......................................................................................................................................21144.004418027170
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20144.00440410210
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................23137.003715115141
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21130.00300270030
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................22130.00301300980
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19125.00251230100
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................22124.00241141350
...................................................................................................................................CGGGTTTCGTTAACAGCGGG........................................................................................................................................20120.00200006113
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21119.00190107101
...................................................................................................................................CGGGTTTCGTTAACAGCGGGCC......................................................................................................................................22111.0011900101
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................1919.009210222
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................1918.008020600
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................2317.007120220
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................2117.007230110
...................................................................................................................................CGGGTTTCGTTAACAGCGGGCG......................................................................................................................................2216.006600000
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................1815.005001220
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................2215.005200120
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTCT.....................................................................................2114.004000220
...................................................................................................................................CGGGTTTCGTTAACAGCGG.........................................................................................................................................1913.003000030
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2213.003020100
....................................................................................................................................GGGTTTCGTTAACAGCGGGCT......................................................................................................................................2113.003001020
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTTT.....................................................................................2112.002010010
...................................................................................................................................CGGGTTTCGTTAACAGCG..........................................................................................................................................1812.002000020
...................................................................................................................................CGGGTTTCGTTAACAGCGGGT.......................................................................................................................................2112.002000110
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................1812.002200000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................2012.002010010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................2412.002000110
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTT....................................................................................2212.002000110
..................................................................................................................................TCGGGTTTCGTTAACAGCGGGC.......................................................................................................................................2212.002000110
......................................................................................................................................................................................TCGTTGTCGACGAAACCT.......................................................................................1812.002020000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................2012.002000200
...................................................................................................................................CGGGTTTCGTTAACAGCGGT........................................................................................................................................2012.002000020
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTC....................................................................................2211.001000100
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGGC....................................................................................2211.001010000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTCA.....................................................................................2111.001010000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTTC...................................................................................2311.001000010
.........................................................................................................................................................GTTATGAAT--------AAATCAACAAG..........................................................................................................2011.001000010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2011.001000010
droWil2
--------------------------------------------------------------------------------------------------------------------AATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGA---CAAA------------CAG--CTCTTTTGATTGTGTGAAAATATCAATGAAAAATAAAACCAACGTA--SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................21118076.001807644012001826113196
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2219560.0095606753685106281484
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................2015515.00551552657205173
...................................................................................................................................CGGGTTTCGCTAGCAGCGGACT......................................................................................................................................2212100.00210055320604941
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231784.007846443201989
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................191432.00432402100020
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................181326.003263250001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................221196.001961881124
...................................................................................................................................CGGGTTTCGCTAGCAGCGGAC.......................................................................................................................................211170.0017014700815
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................231122.001221211000
..................................................................................................................................TCGGGTTTCGCTAGCAGCGGACT......................................................................................................................................231109.001093301867
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21182.00821020070
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................22178.0078740004
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................23175.00752650440
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21168.0068658004
..................................................................................................................................TCGGGTTTCGCTAGCAGCGGAC.......................................................................................................................................22166.00664500021
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................21157.00571500141
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................21151.0051490002
...................................................................................................................................CGGGTTTCGCTAGCAGCGGACC......................................................................................................................................22147.0047440012
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................22142.0042331008
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20135.00352170016
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................19125.0025500020
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................18123.0023300119
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................23121.0021180003
....................................................................................................................................GGGTTTCGCTAGCAGCGGACT......................................................................................................................................21120.0020000515
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................19118.0018400014
.........................................................................................................................................................................................TTGTCGACGAAACCTGCA....................................................................................18114.0014130001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................24114.0014130001
..................................................................................................................................TCGGGTTTCGCTAGCAGCGGA........................................................................................................................................21113.0013000013
...................................................................................................................................CGGGTTTCGCTAGCAGCGGACG......................................................................................................................................22112.0012120000
.........................................................................................................................................................................................TTGTCGACGAAACCTGCAA...................................................................................1918.00880000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................2018.00831004
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2017.00701015
........................................................................................................................................................................................GTTGTCGACGAAACCTGCAA...................................................................................2016.00640002
.........................................................................................................................................................GTCATGATAAATGTGAAAAACA................................................................................................................2216.00620004
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCC.......................................................................................1925.5011110000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................1915.00503002
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCG.......................................................................................1914.00440000
....................................................................................................................................................................................GTTCGTTGTCGACGAAACCTGCC....................................................................................2314.00440000
...................................................................................................................................CGGGTTTCGCTAGCAGCGGA........................................................................................................................................2014.00400004
....................................................................................................................................................................................GTTCGTTGTCGACGAAACCTGC.....................................................................................2213.00300030
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCACT..................................................................................2413.00330000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2213.00320001
....................................................................................................................................................................................GTTCGTTGTCGACGAAACCTGCT....................................................................................2313.00330000
..................................................................................................................................TCGGGTTTCGCTAGCAGCGG.........................................................................................................................................2013.00310002
..................................................................................................................................TCGGGTTTCGCTAGCAGCGGACC......................................................................................................................................2312.00220000
...................................................................................................................................CGGGTTTCGCTAGCAGCGGAA.......................................................................................................................................2112.00200002
.......................................................................................................................................TTTCGCTAGCAGCGGACT......................................................................................................................................1812.00220000
.........................................................................................................................................................................................TTGTCGACGAAACCTGCAT...................................................................................1912.00220000
..................................................................................................................................TCGGGTTTCGCTAGCAGCGGAT.......................................................................................................................................2212.00200002
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTCA.....................................................................................2112.00201010
.......................................................................................................................................TTTCGCTAGCAGCGGACC......................................................................................................................................1811.00110000
.........................................................................................................................................................................................TTGTCGACGAAACCTGCGA...................................................................................1911.00110000
.........................................................................................................................................................GTCATGATAAATGTGAAA....................................................................................................................1811.00110000
droVir3
-----------------------------------------------------------------------------------------------------------A------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAGTGGCAACAAGTACCATA-------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................22110262.00102622510156324420310801000001154741281577543286308299390470143840321853202770010250010000000000102122201875870001833910331281016920221610
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................2117933.0079331510733331290290467350001738527272613427231128078670020099111481441189000014000001000000100011002012349000510429000010936
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................2013543.003543301553169105000000001651687317513710843073450100026728411860100600000000000000000000125000000132100010000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCT......................................................................................................................................2212349.002349591635111602314090000191013211743161400000111141902300000130110100006265127421380491401900001505124211401
...................................................................................................................................CAGATTTCGTCAGCAGCGGGC.......................................................................................................................................211974.0097423806820100010000421200121100000321401400000200000000000010310752521100000002000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................191381.003812237421000000000078913510182000000110002000000000000000000000006004000000003000000010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231357.0035705113600000000002520612540192112101452811241030000000000000000000001190000201763520303761712
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCC......................................................................................................................................221266.002661124905000000000000000000000000000000000000000000000000000000010000000000000000000
......................................................................................................................TCTACATTGAACTCAGATTTCGTCAGC..............................................................................................................................................271198.0019800000000100000000000000003300017000014700000000000000000000000000000000000000000000
......................................................................................................................TCTACATTGAACTCAGATTTCGTCAGCA.............................................................................................................................................281163.0016300000000000000000000000002000010000013300000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................221162.00162091501000000003283611111456000002004010000040000000000000000000010100010000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTT.....................................................................................................................................231146.00146196300000010000010111027000003401020000040000000000000000000012600000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................221124.00124177510000000000150212013001002001000000000000000000000000020013000001000201000011
...................................................................................................................................CAGATTTCGTCAGCAGCG..........................................................................................................................................181111.0011129900000000000000000010000000000202000000000000000000000000005000000000000000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGA............................................................................................251110.001100000000050000000000000000120001500007800000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................181106.0010619105000000000010100001000000000000000000000000000000001111100000000000100000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGG........................................................................................................................................20196.00961124004000000001011113200000079160131000030000000000000000000020500000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................21186.008605200300000000690363049000002100020000010000000000000000000030000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGG.........................................................................................................................................19178.007833610040000000000000060000000120108000005000000000000000000009200000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................23176.0076385000000000006232231220000021121000000000000000000000000020016100000000000001100
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCG......................................................................................................................................22172.007246400000000000000000000000000000000000000000000000000000000301000000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21166.006601600000000000012000000100000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................22157.005724610000000000000001000000000010000000000000000000000000000006000000000000000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAA...........................................................................................26153.0053000000002000000000000000013000700003100000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGT........................................................................................................................................20145.0045012000204000000000000200000000002010000000000000000000000000014800000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20144.004400380000000000000100000200000000000000000000000000000000000003000000000000000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAA..........................................................................................27144.004400000000000000000000000006000200003600000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGT.........................................................................................................................................19137.0037022100000000000100000010000001000000000010000000000000000000010000000000000000000
......................................................................................................................TCTACATTGAACTCAGATTTCGTCA................................................................................................................................................25136.003600000000000000000000000006000600002400000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGTT........................................................................................................................................20133.0033016000100000000001001210000000000000000000000000000000000000011000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................21129.002902610000000000001000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTC.....................................................................................................................................23126.00269200010000000000000010000000100202000002000000000000000000300200000010000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................23125.002511022000000000012000001000000010000000000000000000000000000001000010000000001002
...................................................................................................................................CAGATTTCGTCAGCAGCGGGT.......................................................................................................................................21121.00210520000104000001001000100000010100000000000000000000000000004000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21121.00210310000000000011104102000000000000000000000000000000000000007000000000000000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................18120.00200100000000000013112102200000000100000000000000000000000001004000000000000000000
....................................................................................................................................AGATTTCGTCAGCAGCGGGCT......................................................................................................................................21119.001901400000000000010000000000000000101000000000000000000000000002000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTTA....................................................................................................................................24116.001601600000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................20114.00140140000000000000001102100000000000000000000000000000000001003000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGTT.......................................................................................................................................21113.00130300000001000000000000000000100001000000000000000000000000007000000000000000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................19112.00120000000000000010011001200000001100000001000000000000000000003000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGTA........................................................................................................................................20110.00100500000000000000100000000000000000000000000000000000000000004000000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19110.00100090000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCC.......................................................................................1919.0090900000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACG.............................................................................................2419.0090000000000000000000000000200010000600000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTTC....................................................................................................................................2418.0080700000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................................................................TTGTCGACGAAACCTGCA....................................................................................1818.0080500000000000000000000000000001100000000000000000000000000001000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTA.....................................................................................................................................2318.0080600000000000010000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................2317.0070310000000000000100000000000000100000000000000000000000000001000000000000000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................2017.0071030000000000000000000000000110000000000000000000000000000001000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCT..........................................................................................................................................1817.0070700000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................TCTACATTGAACTCAGATTTCGTCAG...............................................................................................................................................2616.0060000000010000000000000000000020000300000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGTTT.......................................................................................................................................2136.001805000000000000000000000000000000000000000000000000000000000011200000000000000000
.............................................................................................................................................................................TGAACAAGTTCGTTGTCGACGAAACC........................................................................................2616.0060000000000000000000000000000000000600000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTGT....................................................................................................................................2416.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAAC.........................................................................................2815.0050000000000000000000000000000000000500000000000000000000000000000000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2215.0050300000000000010000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2015.0050000000000000000000000100000000000000000000000000000000000004000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGC........................................................................................................................................2015.0050300000000000000000000000000000000000000000000000000000000002000000000000000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAACC........................................................................................2915.0050000000000000000000000000400000000100000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGA.......................................................................................................................................2114.0040200000000000000000100000000000000000000000000000000000000001000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGG.......................................................................................................................................2114.0040400000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGA.........................................................................................................................................1914.0040100000000000000000000000000000000000000000000000000000000003000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAAC.........................................................................................1714.0040000000000000000000000000000000000000000000000000000000000004000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2414.0040101000000000000000000000000000000000000000000000000000000001000000000100000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGA...............................................................................................2213.0030000000000000000000000000000000000300000000000000000000000000000000000000000000
..................................................................................................................................TCAGATTTCGTCAGCAGCGGGC.......................................................................................................................................2213.0030200000000000000000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGTG.......................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000003000000000000000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTG......................................................................................1813.0030020000000000000000000000000010000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCC...................................................................................2313.0031000000000000000000000000000110000000000000000000000000000000000000000000000000
....................................................................................................................................AGATTTCGTCAGCAGCGGGCTT.....................................................................................................................................2213.0030100000000000000000000000000000000000000000000000000000000001100000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTA......................................................................................2013.0030110000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TT----------ATGAACAAGTTCGTTGTCGAC..............................................................................................2313.0030000000000000000000000000100000000200000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA...................................................................................2313.0030000000000000010001000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGAC......................................................................................................................................2212.0020100000000000000000010000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGA........................................................................................................................................2012.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................CATTGAACTCAGATTTCGTCAGCAGC...........................................................................................................................................2612.0020000000000000000000000000000000000200000000000000000000000000000000000000000000
.........................................................................................................................................................GTGATGATT----------ATGAACAAG..........................................................................................................1812.0020000000000000001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................TCTACATTGAACTCAGATTTCGTC.................................................................................................................................................2412.0020000000000000000000000000100000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCTA...................................................................................2312.0020000000020000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTAA....................................................................................................................................2412.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGTA.......................................................................................................................................2112.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCA......................................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................ATTTCGTCAGCAGCGGGCT......................................................................................................................................1912.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................TCAGATTTCGTCAGCAGCGGGCT......................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCGC......................................................................................2012.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCT....................................................................................1912.0020000000000000010000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TGCATACTGTGTGGAGTGGCAACAAG..............................................................2612.0020000000000000000000000000100000000100000000000000000000000000000000000000000000
...................................................................................................................................CAGATTTCGTCAGCAGCGGGCTG.....................................................................................................................................2312.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
A---------------------------------ATATCTG-------------------------------------------------------------TGGATAAAAATAGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATT--------AAAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGTGGAGAGGCAACCATTCTATTGAAGATGACTGCGA------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................2112880.00288043717986126316116
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2212537.002537839273316007337
...................................................................................................................................CAGGTTTCGTTAGCAACGGGCT......................................................................................................................................221334.0033442934562083
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................201322.003221410809830
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................211159.0015940698501
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21186.00867801340
...................................................................................................................................CAGGTTTCGTTAGCAACGGGC.......................................................................................................................................21182.00822300770
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................23163.00632501116110
...................................................................................................................................CAGGTTTCGTTAGCAACGGGCC......................................................................................................................................22153.00530000530
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20149.00494701100
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................23148.0048190111521
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................19143.0043200111110
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................22137.00371020790
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21121.00210021900
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................22117.0017402470
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19113.00131300000
....................................................................................................................................AGGTTTCGTTAGCAACGGGCT......................................................................................................................................21111.0011111440
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................18110.0010100090
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................1817.007101500
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2217.007201400
...................................................................................................................................CAGGTTTCGTTAGCAACGGGCTT.....................................................................................................................................2316.006001140
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................1915.005301100
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................2015.005500000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................2315.005100130
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................2215.005001400
.....................................................................................................................................................................................TTCGTTGTCGACGAAAC.........................................................................................1713.003000300
...................................................................................................................................CAGGTTTCGTTAGCAACGGG........................................................................................................................................2013.003001200
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................2012.002001100
....................................................................................................................................AGGTTTCGTTAGCAACGGGC.......................................................................................................................................2012.002000110
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................2112.002101000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2412.002101000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................1912.002002000
...................................................................................................................................CAGGTTTCGTTAGCAACGGGCTC.....................................................................................................................................2312.002000020
.........................................................................................................................................................................................TTGTCGACGAAACCTGCA....................................................................................1812.002001100
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGAC....................................................................................2211.001000010
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCAA...................................................................................2111.001100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCTGA..................................................................................2411.001000100
....................................................................................................................................................................................GTTCGTTGTCGACGAAACCTG......................................................................................2111.001100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATCT.................................................................................2511.001000100
....................................................................................................................................................................................GTTCGTTGTCGACGAAACCTGCA....................................................................................2311.001100000
...................................................................................................................................CAGGTTTCGTTAGCAACGGGT.......................................................................................................................................2111.001000100
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCACC..................................................................................2311.001100000
......................................................................................................................................GTTTCGTTAGCAACGGGCT......................................................................................................................................1911.001000010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA...................................................................................2311.001001000
...................................................................................................................................CAGGTTTCGTTAGCAACGGGCTA.....................................................................................................................................2311.001001000
droGri2
----------------------------------------------------------------------------------------------------------------------TCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAGAGTCAACGAGT-------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................221105.001051050
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................21183.0083794
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................20131.0031310
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21110.0010100
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................2316.00660
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................2214.00440
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................2013.00330
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................1913.00330
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................1913.00330
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAT...................................................................................2212.00220
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................1912.00220
....................................................................................................................................................................................GTTCGTTGTCGACGAAACCTGCA....................................................................................2311.00110
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................1811.00110
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCACT..................................................................................2411.00110
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................2311.00110
droAna3
-----------------------------------------------------------------------------------------------------------A-------AAGTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCG--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAATAACAAC-----------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................21120626.0020626831139539455018608
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2212509.002509120527193614659
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................201964.00964451201782331
...................................................................................................................................CGGGTTTCGTTAACAGCGGGCT......................................................................................................................................221670.0067012312292603
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................211318.003185001146193
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................211224.0022400070217
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231162.001623039120072
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................211131.0013113100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................191130.00130292075024
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................201108.0010895000013
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................23164.0064112021426
...................................................................................................................................CGGGTTTCGTTAACAGCGGGC.......................................................................................................................................21160.00601304052
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................22137.00377118020
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19131.00313100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................22121.0021510708
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................18117.00171000016
....................................................................................................................................GGGTTTCGTTAACAGCGGGCT......................................................................................................................................21115.00150020013
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................20114.0014300407
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................21114.00141001012
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................20111.00111100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................22110.0010500401
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................18110.0010090001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2019.009000009
...................................................................................................................................CGGGTTTCGTTAACAGCGGGCC......................................................................................................................................2219.009080001
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................1919.009600003
...................................................................................................................................CGGGTTTCGTTAACAGCGGG........................................................................................................................................2018.008000008
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................2316.006100203
...................................................................................................................................CGGGTTTCGTTAACAGCG..........................................................................................................................................1814.004000103
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................2314.004040000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTG......................................................................................1814.004400000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................2414.004130000
......................................................................................................................................................................................TCGTTGTCGACGAAACCT.......................................................................................1813.003300000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTT....................................................................................2213.003000201
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2213.003300000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGT.....................................................................................2012.002100100
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTTA.....................................................................................2112.002000002
.....................................................................................................................................................................................TTCGTTGTCGACGAAAC.........................................................................................1712.002000200
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCC.......................................................................................1912.002000002
....................................................................................................................................................................................GTTCGTTGTCGACGAAACCTGCA....................................................................................2312.002200000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT..................................................................................2412.002100001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATTAG................................................................................2612.002000002
...................................................................................................................................CGGGTTTCGTTAACAGCGGT........................................................................................................................................2011.001000010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGGT....................................................................................2211.001000001
...................................................................................................................................CGGGTTTCGTTAACAGCGGGA.......................................................................................................................................2111.001000001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2411.001000100
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAT...................................................................................2211.001000100
................................................................................................................................................................................ACAAGTTCGTTGTCGACGAAACCTGC.....................................................................................2611.001000001
droBip1
T---------------------------------A--------------------------------------------------------------------TGTGA------ATTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCG--------AAATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAATGACAAC-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TAGTGTTTTCCAATTG----CTTTTCATGGCTAAATGTCTT-------------------------------------------------------------A----G------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAA--------------TTTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAAACAACGTTC--A----AAAT--TTGTGAAA-----------A----ATTAGAGAATTAGACAAATAGAT-SizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------------------------------------------------------------------------A------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTG--------TTATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAACTCAACATT----ACAAGCAG--CCGTTACGATC------------------TAATTAAAATAAA------SizeHit CountTotal NormTotal
No Reads
droEle1
A----------------------------------TA-CTA-------------------------------------------------------------ATCAAA------GAAGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAAAGTCAACA----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-----------------------------------------------------------------------------------------------------------A-------AAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC---------AATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGTGGAAAATCAACAA---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------------------------------------------------------------------------------------------A------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTC--------TTTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A---------------------------------ATACCTA-------------------------------------------------------------AGAACA------AAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTAC--------TTTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
---------------------------------------------------------------------------------------------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTAC--------TTTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A-------------------------------------CTT-------------------------------------------------------------AGGAGA------AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................221126486.00126486000077021131477221461804000472390000600067710441104023111200010000000000001010007240000000000000000066342222194271192279080515687501393710114546640132442175295507728306763312962583218267671263101332121153661482109611448446829511392812751041378125000000020015130300100100000000000000061845405035351372857449711044268840201266683010000078901808000060600000000000000000132112130210370031138005965055430131064374115121671000282200120367280018343227100104302050200218415823541915181314216382000167022560003022100011200231146740601023400
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................211114701.0011470100005083010533270723020970000504147178296923781680000000101000000100000112000000000000000001010870701360111717127711877293458035111181754112109981621563585040101471315263522911534121131800209909692646938738577495900000000009135000100300000000000000036803390019532052873272482321081472145677968600000823154125000018019000000000000000003601400000000500110000132201242725651713142471873912125455109638140030183271085361061007254101001008011218925512198481543159365220020217112421602001247140011169068393161478121920014800
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................20124654.002465400005400000030014005600005000219359739196600000000000000000000001100000000000000000000002466200007421523113057214170148226530082686391142180565102716612310441364835160000000000000000000000000000000000001679175407105479111234010892622009308417600000239860100005000000000000000000000020000000000000000210161553000463151220000241000001110223100000000000010013013715435801331100005024000000000000000019600100000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................2318318.008318000076101170132010022300000000000000000000000000000000000000000000000000000000021211251617710152873131328340892510253161265840094983755110612028131951501401412340714854800000000002000000000000000000000000051048202311010024471734210032612000002783000000000000000000000000000100000000005005915002001200100191022110000012001010100192500002110100000002912216703322000004041000000000002002006500000000100
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2216481.006481000020010000000000000000010540000000000000000000000000003000000000000000000000001110340070125241500217125600001233032610223101111810300209140000000000120371000000005000000000000335102895202812175652995200000747060000109000000000000000001001000000015013000055540155740142840101010294201004501201549311001667170023006474202481082181802485012105022351530123135040333943665241477275103972913186432182641042041400
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATC..................................................................................2415384.005384000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033752008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................1913437.003437000000000000000000100000010018731603300000000000000000000000000000000000000000000007000000011037305341212201353100045144200030201422132101043698105000000000000000000000000000000000000383465022301146993518168114230000055000000000000000000000000000000000000000000000000002150000080000000400000000010100000000000000009413340010000000000000000000000000000800000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................2211906.001906000000000000001000000000000000000000000000000000000000000000000000000000000000006601020030013511512311200032100011310010001728016622908422020711225174000000000000000000000000000000000000182740531011002060700000013000000000000000000000000000000000000000000000001003360000432020000210000202006120000000000000000100111100000000101000000000000000000100000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................2311898.0018980000250000001002000500000000000000000000000000000000000000110000000000000000010002000010020068701398640281556200013046016100001411060972503312813000000000010000000000000000000000000112105051002632430331331000009000000000000000000000000000000000000000100017100000011702102910907000011600001010080100000000000000011418143400011000003020000000100000000006500100000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................2111347.001347000016000000100010000000000000000000000000000000000000000000000000000000000000000390000000100540122110000820003110001000422150140641002511624000000000000000000000000000000000000384302400264415629206710000097300000000100000000000000000000000000000000000000001261000668080000011000011000311000020000000000048294791001000000030030000000000001010113100000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................2211044.0010440000300000000000012000000000000000000000000000000000000000000000000000000000120010031300067111930537110103200100227530101140156020516016123900000000000000000000000000000000000080720420011511921703300000070000000100000000000000000000000000000000000110001012200041300000000000020000601000000000000000012240200000000100000000000000000000700000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................211823.008230000000000000003000000000003100000000000000000000000000000000000000000000000000000000001000000000000000000000000000011000010000000000000000010800000000000000000000006202450153115000000002020000002000000000000001000000000000000071000024035710012501002044110167010064250001000000000220311417323901310000012023100003515180411703860212210021361200
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................211692.00692000025000110200000010000000000000000000000000000000000000000000000000000000000000200000010003031301001054000220300000021521061017102509061000000000000000000000000000000000000021230120011260151440700000006100000000000000000000000000000000000000000000100000113000031803000009000000000000000000001000000016623160000000000200000000000000000000500000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................211633.006330000400000010000000000000000000000000000000000000000000000000000000000000000000011000100730219085603002216100022710051200087010125012091400000000000000000000000000000000000043250150027270370801200000042000000000000000000000000000000000000000000000000000300001300000001000010000000000000000000000002220001000000100000000000000000000300000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................221436.00436000010101010400200030000000000000000000000000000000000000000000000000000000000001161012002001300119031125850002610071110184010111040710000000000000000000000000000000000003030016005110801003410000023000000000000000000000000000000000000000000000000000200003302000001000000000003000000000000000025140000000000000000000000000000000100000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................201362.0036200002000000000000000000000001000000000000000000000000000000000000000000000000000200000030003002300001042000000100000323220707515070640000000000000000000000000000000000001631070019230221807000000220000000000000000000000000000000000000000000000000009000021101000003000000000000000000000000000042640000000000000000000000000000000500000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGG........................................................................................................................................201287.00287000000000000000000000000010000010110000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000140110012000701000000000000010000000000000000000000000000000110000000000010001601000000000019000030210000000000000000342121000160000010000000003300253171112811201010000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................231276.002760000200000010000001000000000000000000000000000000000000000000000000000000000000080000002000903150100019000001001600000204000105050613000000000000000000000000000000000000191501000250203060000006000000000000000000000000000000000000000000022000000000000300000000000001000001000000000000000010020000000000100000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................181239.00239000000000000000000000000000031220300000000000000000000000100000000000000000000002000000000060029000000471000500000000030000000039820000000000000000000000000000000000001140210622231815160000036000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................201229.0022900000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000310000000324128210000000000000000000000000000000000001080500000101010000003000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000060000000000000000000000000000000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................221202.002020000200000000000000000000000000000000000000000000000000000000000000000000000000030000004003110142211207300001804040130010000000020100000000000000000000000000000000000001060500530704010000007100000000000000000000000000000000000000000000000000000000301000011000000000100000000000000000001100000000100000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................211195.00195000030000000001000000000000000000000000000000000000000000000000000000000000000001200000000007003000000700000000100000280100123000230000000000000000000000000000000000001260600750201902930000017000000000000000000000000000000000000000000000000000400002700000003000000000000000000000000000012220000000000000000000000000010000000000000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................181169.0016900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321060245010310000000000000000000000000000000000008130500970400010000003100100000000000000000000000000000000000000000000100050000040000000100000000000000000000000000000441100000000000000000000000000000100400000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................241163.0016300001000000000000010000000000000000000000000000000000000000000000000000000000000200000000003011500010039100080102000002000000000040000000000000000000000000000000000000121305001408080120000005000000000000000000000000000000000000000000011000000000003101000002000000000000000000000000000010100100000000100000000000000000000100000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA...................................................................................231140.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000400000020006011300000020000000000000122001000002322370000000000000000000000000000000000001570400000000000000000000000000000000000000000000000000000000000000000000200000500000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................221137.00137000000000000000100000000000014011000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000121016011110000000000000000000000000000000000000000000000001000000000030000020000001000000110000000000000000000001174401100000002010000000100000302025400010000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................231113.0011300003000010000000000000000000000000000000000000000000000000000000000000000000000100000020101009010000240000110302010000300000002001000000000000000000000000000000000000690300200014080000002000000000100000000000000000000000000000000101000000000001101000000000000000200000000000000000000100000000000000000000000000000000300000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTT....................................................................................221106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000240000000000600000000005000010000000000000000001021000000000000000000000000000000000000030100020300020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGATC...................................................................................231106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19198.009800000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002000000120000000000000010000000031300000000000000000000000000000000000001570100411214040200000013000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................19187.008700000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000500001010100100000000000000000000000000000000000058061071307000000000013000000000000000000000000000000000000000000000000100001000000000000000000000200000130000000000002140100000000000000000000000000000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCG..........................................................................................................................................18179.007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000100000000000000000000000000000000000000000000000000001000000010000000100000000000000000000000000000000000000000000000000000000000000000000007000024010000000000000000221100204000000000000000020000000012200000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................20168.00680000100000000000000000000000000000000000000000000000000000000000000000000000000030000000000100100000000000000000000020000000021530000000000000000000000000000000000006803005302010420000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTA......................................................................................20161.0061000030000000000000000000000000000000000000000000000000000000000000000000000000004000000000030000000005000000000000002010000000011000000000000000000000000000000000000540400040325030000008000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001010000000000000000000000000000000000000000000
....................................................................................................................................GGGTTTCGTTAGCAGCGGGCT......................................................................................................................................21158.00580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000302001010000000000010000000000000000000000000000000000000000000000000000000000000000000000101001000000100000000000432125000000002021000100000001403001200000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCTA...................................................................................23152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000040000000100100130000019000110001000001000000101010000000000000000000000000000000000000360500000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT..................................................................................24152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000001300002000000000110000000000100000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000001213000000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................20148.0048000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020013204000000000000000000000000000000000000000000000000000000000000000320200330500010000006000000000000000000000000000000000000000000000002000000000000000000000000000011000030000000000000210000000000000000000000000000000000000000000
droSim2
-----------------------------------------------------------------------------------------------------------A------AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................20119993.001999319743574731410800200100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................2119626.0096269295346554112001814012308002
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2217704.0077047016503825022010526505906001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................1913350.00335029028481441100000000102
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2211660.001660113054080060000011001000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................1811162.0011629602130917800000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231893.0089384124520000020100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................221429.004294192700000010000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................211328.0032827943500800000200000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................221286.0028625732600000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCC......................................................................................................................................221226.0022617704900000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................231172.001721670410000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................211154.001541500310000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................221131.001311212700000000100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................231100.00100940010400000100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................211100.00100972010000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21174.0074740000000000000000
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................22173.0073710100000000100000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCG......................................................................................................................................22155.00553402100000000000000
.........................................................................................................................................................................................TTGTCGACGAAACCTGCA....................................................................................18136.0036321300000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCG.......................................................................................19132.0032320000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCC.......................................................................................19232.0064640000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21129.0029210240200000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20126.0026210040100000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19123.0023221000000000000000
.........................................................................................................................................................................................TTGTCGACGAAACCTGCAA...................................................................................19121.0021210000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................23121.0021200100000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................24119.0019160100000110000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................19119.0019190000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................22117.0017160100000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCG..........................................................................................................................................18116.0016000021400000000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTG......................................................................................18113.0013130000000000000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................18111.0011110000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGG.........................................................................................................................................19110.0010000001000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCT.......................................................................................1819.00950000400000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2419.00990000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCTT.....................................................................................................................................2318.00880000000000000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................1917.00750000100000100000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................2017.00770000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................2017.00760010000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2017.00770000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCTA.....................................................................................................................................2315.00511200000000100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACT........................................................................................1815.00550000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCACT..................................................................................2415.00550000000000000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCAA...................................................................................2115.00550000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGG........................................................................................................................................2015.00520000300000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAC...................................................................................2214.00440000000000000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCAA...................................................................................2014.00430100000000000000
..................................................................................................................................TCGGGTTTCGTTAGCAGC...........................................................................................................................................1813.00310000200000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGAC......................................................................................................................................2213.00330000000000000000
..................................................................................................................................TCGGGTTTCGTTAGCAGCG..........................................................................................................................................1913.00300000300000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTA......................................................................................2013.00330000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGG.......................................................................................................................................2113.00330000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAAA.................................................................................2512.00220000000000000000
....................................................................................................................................GGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2112.00200200000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCACA..................................................................................2412.00220000000000000000
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGCC......................................................................................................................................2312.00220000000000000000
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2312.00220000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGGG......................................................................................................................................2212.00210100000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCT....................................................................................2112.00220000000000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCC....................................................................................2112.00220000000000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGGC......................................................................................................................................2212.00220000000000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATC..................................................................................2411.00110000000000000000
droSec2
-----------------------------------------------------------------------------------------------------------A------AACATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................21113672.00136722452218713218
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2212713.00271340392762025
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2211028.001028312501512
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................201551.0055115014396
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................231372.003721364349
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231201.0020115310173
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................211162.00162610155
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................19194.0094120082
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21180.008010079
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................21171.0071031751
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21154.0054410112
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20150.0050240125
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................18126.002600224
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................22121.002110218
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19118.001816002
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................22116.001601015
....................................................................................................................................GGGTTTCGTTAGCAGCGGGCT......................................................................................................................................21115.001500510
...................................................................................................................................CGGGTTTCGTTAGCAGCGGG........................................................................................................................................20111.00110047
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................2419.0090018
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................2319.0090018
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................2319.0090009
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................2118.0084004
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2018.0080026
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................2218.0081016
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................2017.0076001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................2216.0060006
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAT...................................................................................2215.0051004
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2215.0052003
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTT....................................................................................2214.0040004
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCC......................................................................................................................................2213.0030012
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2413.0031002
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................2013.0031002
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCTA...................................................................................2312.0020002
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................1912.0021001
.......................................................................................................................................................................................CGTTGTCGACGAAACCTG......................................................................................1812.0022000
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2312.0020002
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGG........................................................................................................................................2112.0020002
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGACC...................................................................................2321.5030003
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTC....................................................................................2211.0010001
.........................................................................................................................................................................................TTGTCGACGAAACCTGCA....................................................................................1811.0010001
...................................................................................................................................CGGGTTTCGTTAGCAGCGG.........................................................................................................................................1911.0010001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGAC....................................................................................2211.0010001
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCTT.....................................................................................................................................2311.0011000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATA..................................................................................2411.0010001
........................................................................................................................................................................................GTTGTCGACGAAACCTGCAA...................................................................................2011.0010001
......................................................................................................................................................................................TCGTTGTCGACGAAACCT.......................................................................................1811.0010001
...................................................................................................................................CGGGTTTCGTTAGCAGCG..........................................................................................................................................1811.0010001
...................................................................................................................................CGGGTTTCGTTAGCAGCGGT........................................................................................................................................2011.0010001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATTT.................................................................................2511.0010001
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................1911.0010001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCGC......................................................................................2011.0010001
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTCA.....................................................................................2111.0010001
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCTC.....................................................................................................................................2311.0010001
droYak3
T-------------------------------------------------------------------------------------------------------GCAA------AGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2215137.005137167248218996436964640010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................2114500.0045001798316543696691093120000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................2012374.00237420141191618913500000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCT......................................................................................................................................221823.008234961167117132630000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231451.00451243161084285200000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................221225.00225189713051100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................231176.0017614922102200000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................231153.00153436133315700000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................191149.001491041410141600000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCC......................................................................................................................................221146.001469205400000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................181121.001218803300000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................221108.0010855016082900000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................21194.00945100276100000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................21191.00915401892520010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................22171.0071621102500000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................21158.0058446110600000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20144.0044140000300000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGG.....................................................................................21131.0031290100100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................23121.0021112103400000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCG......................................................................................................................................22117.0017170000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21114.001480112200000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCTT.....................................................................................................................................2319.00980100000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCC.......................................................................................1918.00880000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................1918.00825001000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2218.00880000000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................1917.00734000000000
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................2217.00740002100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................2016.00601101300000
.....................................................................................................................................................................................TTCGTTGTCGACGAAAC.........................................................................................1716.00600000600000
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................1816.00620000400000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................2015.00503100100000
......................................................................................................................................................................................TCGTTGTCGACGAAACCT.......................................................................................1815.00505000000000
.........................................................................................................................................................................................TTGTCGACGAAACCTGCA....................................................................................1815.00541000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGG........................................................................................................................................2014.00400010200010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCACA..................................................................................2414.00440000000000
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAT...................................................................................2214.00402000200000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAC..................................................................................2414.00410100200000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA...................................................................................2314.00410101100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................2413.00310100100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCG.......................................................................................1913.00330000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT..................................................................................2413.00300200100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGAC....................................................................................2212.00220000000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGT.......................................................................................................................................2112.00210010000000
........................................................................................................................................................................................GTTGTCGACGAAACCTGCAA...................................................................................2012.00210001000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGTT....................................................................................2212.00220000000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATA..................................................................................2412.00220000000000
....................................................................................................................................GGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2112.00210010000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTA......................................................................................2012.00210001000000
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGAC......................................................................................................................................2212.00210100000000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2412.00210000100000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCTC...................................................................................2311.00110000000000
droEre2
T-------------------------------------------------------------------------------------------------------GCAA------AGCATCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATA--------AATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGTGGAAAATCAAC-----------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGC.....................................................................................21121489.00214894587911479954196520
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCA....................................................................................2214377.004377978278584633124430
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCT......................................................................................................................................2211148.00114821745621310090
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTG......................................................................................201730.00730235075024180
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAA...................................................................................231337.00337361051202380
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAT...................................................................................231235.0023522335011740
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCA....................................................................................211113.00113102030080
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGT.....................................................................................211106.00106301901830
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGA.....................................................................................21196.009610600890
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGC.....................................................................................20195.0095460300460
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................21184.008413620720
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCT.......................................................................................19164.0064160300450
........................................................................................................................................................................................GTTGTCGACGAAACCTGC.....................................................................................18140.004010000390
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCC....................................................................................22133.0033021800130
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCT....................................................................................22128.002853320150
......................................................................................................................................................................................TCGTTGTCGACGAAACCTG......................................................................................19126.002624000020
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGC.....................................................................................19119.001930100150
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAC...................................................................................23118.00182540070
..................................................................................................................................TCGGGTTTCGTTAGCAGCGGGC.......................................................................................................................................22117.001700100160
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAG...................................................................................23116.001630300100
....................................................................................................................................GGGTTTCGTTAGCAGCGGGCT......................................................................................................................................21114.001400101120
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCG....................................................................................22112.001200100110
........................................................................................................................................................................................GTTGTCGACGAAACCTGCA....................................................................................19112.00121020090
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCA....................................................................................20110.00104010050
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTT......................................................................................2019.0090010080
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAA..................................................................................2418.0080010070
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAA...................................................................................2218.0081110050
.....................................................................................................................................................................................TTCGTTGTCGACGAAACC........................................................................................1818.0081500020
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGCC......................................................................................................................................2218.0080800000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTC......................................................................................2016.0061000050
...................................................................................................................................CGGGTTTCGTTAGCAGCGGG........................................................................................................................................2015.0050010040
.........................................................................................................................................................................................TTGTCGACGAAACCTGCA....................................................................................1815.0050000050
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCATT..................................................................................2414.0041010020
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGT.......................................................................................................................................2113.0030010020
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCCA...................................................................................2313.0030030000
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAAT..................................................................................2413.0030000030
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCT....................................................................................2113.0031000020
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTCA.....................................................................................2112.0020000020
......................................................................................................................................................................................TCGTTGTCGACGAAACCT.......................................................................................1812.0022000000
.......................................................................................................................................................................................CGTTGTCGACGAAACCTG......................................................................................1812.0021000010
...................................................................................................................................CGGGTTTCGTTAGCAGCGGGA.......................................................................................................................................2112.0020000020
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGA.....................................................................................2012.0021000010
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCAG...................................................................................2212.0021000010
.....................................................................................................................................................................................TTCGTTGTCGACGAAACCTGCAGT..................................................................................2412.0020010010
........................................................................................................................................................................................GTTGTCGACGAAACCTGCAA...................................................................................2012.0020010010
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCAA...................................................................................2112.0021000010
..................................................................................................................................TCGGGTTTCGTTAGCAGC...........................................................................................................................................1812.0020000020
.....................................................................................................................................................................................TTCGTTGTCGACGAAACTGC......................................................................................2061.3380000080
.......................................................................................................................................................................................CGTTGTCGACGAAACCTGCC....................................................................................2011.0010000010
......................................................................................................................................................................................TCGTTGTCGACGAAACCTGCATT..................................................................................2311.0011000000

Generated: 10/20/2015 at 07:02 PM