ID:

dps-mir-969

 Coordinate:

XL_group3a:1977493-1977604 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.8 -35.3 -35.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGAAAGGGAAATTGAAATGCAAACTGAAATATAATTCCTGGAAGCCATCTAGGAGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGTATATGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTGCAGCCAAATCATCGCAGCGCATCCACCAGAACTAATCGTAGAGCCGGTATTGAAGATGACGATATGATCACATA

******************************************************..((((.((((((((((((((.((..((((((((((.................)))))))).)).)).)))))))))))))).))))....******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM444067

head

 M062

head

 M040

female body

 M059

embryo

 V112

male body		 GSM343916

embryo

 SRR902012

CNS imaginal disc

 M022

male body		 SRR902011

testis
.............................................................................................................AACTTGACACGTTGAGCTCGT.................................................................................. 21 0 1 110.00 110 55 17 16 10 6 2 2 1 1
.....................................................................GAGTTCCACCATGCAAGTTTT.......................................................................................................................... 21 0 1 73.00 73 20 35 17 0 1 0 0 0 0
............................................................................................................AAACTTGACACGTTGAGCTC.................................................................................... 20 0 1 28.00 28 10 14 2 0 0 0 0 2 0
............................................................................................................AAACTTGACACGTTGAGCTCG................................................................................... 21 0 1 16.00 16 7 6 3 0 0 0 0 0 0
.....................................................................GAGTTCCACCATGCAAGTTT........................................................................................................................... 20 0 1 11.00 11 1 3 7 0 0 0 0 0 0
............................................................................................................AAACTTGACACGTTGAGCTCGT.................................................................................. 22 0 1 8.00 8 3 1 3 0 0 1 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTCG................................................................................... 20 0 1 7.00 7 4 1 1 0 0 1 0 0 0
.....................................................................GGGTTCCACCATGCAAGTTTT.......................................................................................................................... 21 1 1 6.00 6 0 6 0 0 0 0 0 0 0
...........................................................................................................AAAACTTGACACGTTGAGCTCG................................................................................... 22 0 1 5.00 5 0 2 3 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTCGTT................................................................................. 22 1 1 4.00 4 3 0 1 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTCGC.................................................................................. 21 1 1 4.00 4 0 4 0 0 0 0 0 0 0
.............................................................................................................AAATTGACACGTTGAGCTCGT.................................................................................. 21 1 1 4.00 4 2 2 0 0 0 0 0 0 0
....................................................................CGAGTTCCACCATGCAAGTTTT.......................................................................................................................... 22 0 1 4.00 4 0 3 1 0 0 0 0 0 0
..................................................AGGAGCCTGTTCTACGTGC............................................................................................................................................... 19 0 1 3.00 3 0 0 1 0 0 0 2 0 0
...........................................................................................................AAAACTTGACACGTTGAGCTCGT.................................................................................. 23 0 1 3.00 3 1 1 1 0 0 0 0 0 0
............................................................................................................AAACTTGACACGTTGAGCT..................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0
......................................................................AGTTCCACCATGCAAGTTTTG......................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.....................................................................GAGTTCCACCATGCAAGTTC........................................................................................................................... 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................................................GATCGAGTTCCACCATGCAAGTTTT.......................................................................................................................... 25 2 1 2.00 2 0 2 0 0 0 0 0 0 0
.............................................................................................................AGCTTGACACGTTGAGCTCGT.................................................................................. 21 1 1 2.00 2 0 1 0 1 0 0 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTCCT.................................................................................. 21 1 1 2.00 2 0 1 0 1 0 0 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTCGTG................................................................................. 22 0 1 2.00 2 1 0 0 0 0 1 0 0 0
.............................................................................................................AACTTAACACGTTGAGCTCGT.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTCGA.................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................AGTTCCACTATTCAAGTTTTGA........................................................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................AAACTTGACACGTTGAACTC.................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTC.................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................AAACTTGACACGTTGAGCTCGC.................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................ACTTGACACGTTGAGCTCG................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................AAAATTGACACGTTGAGCTCGT.................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTCAGCTCGT.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGCTGAGCGCGT.................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................ACTTGACACGTTGAGCTCGTGT................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.....................................................................GAGTTCCACCATTCAAGTTTT.......................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................GTTCCACCATGCAAGTTTT.......................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................AACATGACACGTTGAGCTCGT.................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................GAGTTCCACCATGCAAGTTTTG......................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................ATCTTGACACGTTGAGCTCGTT................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................GGGTTCCACCATGCAAGTTTTT......................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................AAACTCGACACGTTGAGCTC.................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACTTTGATCTCGTA................................................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................CTAGTTCCACCATGCAAGTTTT.......................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................AGACTTGACACGTTGAGCTC.................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................AACTCGACACGTTGAGCTCGT.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................CGAGTTCCGCCATGCAAGTTTT.......................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................AACCTGACACGTTGAGCTCGT.................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................GAGTTCCACCCTGCAAGTTTT.......................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTACGCTCGT.................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTGAGCTCGTA................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................GAATCCAAAAACTTGACACGTTGAGCTCC................................................................................... 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................AACTTGACACGCTGAGCTCGTA................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................GACTTCCCCCATGCAAGTTTT.......................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................GAGTTCCCCCATGCAAGTTTT.......................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................AACTAGACACGTTGAGCTCGT.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................GACTTCCACCATGCAAGTTTT.......................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................AAACTTGACACGTTGAGCTT.................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................AACTTGACTCGTTGTGCTCGT.................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTTACACGTTGAGCTCGC.................................................................................. 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................AGACTTGACACGTTGAGCTCGC.................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................GAGCTCCACCATGCAAGTTTT.......................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTAAGCTCGT.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................AAACTTGACACGTTAAGC...................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................ACTTGACACGTTGAGCTC.................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGCTGAGCTCGTT................................................................................. 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................ACCTTGACACGTTGACCGCGT.................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.............................................................................................................AACTTGACACGTTCCCCTCGT.................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
.....................................................................GAGTTCTAACATGCCAGTTTT.......................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................................CGTTGAGCGCGTGCATGG............................................................................ 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0
......................................................................AGTTCCACTAATCAAGTTTTG......................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0
............................................................................................................TAACTTGACACTGTGAGCT..................................................................................... 19 3 7 0.14 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CTAAATGAAGAGCCGGTAT........................ 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0
................................................................................................................................CTGCGGGGTGCAGCCAAAA................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCTTTCCCTTTAACTTTACGTTTGACTTTATATTAAGGACCTTCGGTAGATCCTCGGACAAGATGCACGCTCAAGGTGGTACGTTCAAAACTCGCATATACTTAGGTTTTTGAACTGTGCAACTCGAGCACGCACCACGTCGGTTTAGTAGCGTCGCGTAGGTGGTCTTGATTAGCATCTCGGCCATAACTTCTACTGCTATACTAGTGTAT

*******************************************************************..((((.((((((((((((((.((..((((((((((.................)))))))).)).)).)))))))))))))).))))....****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body
.........................................TTAGGTAGATCCTCGCACAA....................................................................................................................................................... 20 2 1 1.00 1 1
..................................................................................................................................CGCACCACGTCCGCATAGTA.............................................................. 20 3 5 0.20 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XL_group3a:1977443-1977654 - dps-mir-969 Known_mirbase A-GAAAGGGAAATTGAAATGCAAACTGAAATATA-A---------------------TTCCTGGAAGCCATCT--------------AGG----------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTAATCGTAGAGCCGGTATTGAAGATGACGATATGATCACATA
droPer2 scaffold_11:2701236-2701447 + dpe_84 confident A-GAAAGGCAAATTAAAATGCAAACTGAAATATA-A---------------------TTCCTGGAAGCCATCT--------------AGG----------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTACTCGTAGAGCCGGTATTGAAGATGATGATATGATCACATA
droWil2 scf2_1100000004909:12029368-12029483 + dwi_49 confident T-GAAAAGAAA-T---------------------------------------------T--G-----AAAGTT--------------ACG-----TTTATATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA-CAG-----------------------------------------------------------------------
droVir3 scaffold_12928:1264099-1264221 - dvi-mir-969 Known_mirbase T-TCA--------------------TGTGGTGTC-----------------G---CTTT--CAAGAGCAGCTC--------------GCG----------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CGGC----------------------------------------------------------------------
droMoj3 scaffold_6473:13724318-13724400 + dmo_81 confident -------------------------------------------------------------------------------------------------------CTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--T--GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGG-CA------------------------------------------------------------------------
droGri2 scaffold_15203:8445755-8445844 + dgr_54 confident C-AT-------------------------------------------------------------------CC--------------GGG----------TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTG------------------------------------------------------------------------------
droAna3 scaffold_13335:1607986-1608095 - dan_60 confident T-AT---T---------------------------T---------------------TTTTT-----------GGAA----------AAT----------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGATAA-------------------------------------------------------------------
droBip1 scf7180000395454:59915-60030 + T-GT---G-----------------TCTTGTAATTT---------------------TTTTT-----------GGAA----------AAT----------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAG-----------------------------------------------------------------------
droKik1 scf7180000302696:1720067-1720202 + A-ACT------------------------------TTATATTTAAGATGTAAGTACAAT--A-AGTGAAAGTG--------------AAG----------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAAA------------------------------------------------------------------
droFic1 scf7180000453872:337528-337658 - A-GCGATGGCA--------------------------------------------------C-----------GGGGAGTCCCC--GAATTCCCGGT---TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTC----------------------------------------------------------------
droEle1 scf7180000491193:225598-225713 + G-TCA--------------------------------------------------------C-----------GGGTAATCTCCCAAAAA----------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAA-------------------------------------------------------------------
droRho1 scf7180000779986:498605-498709 - C------------------------------------------------------------------------TGGGAATCCCC--GAAA----------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-CGG-----------------------------------------------------------------------
droBia1 scf7180000301760:584987-585076 - A-G----------------------------------------------------------------------------------------------------CTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCT-TGGCC---------------------------------------------------------------------
droTak1 scf7180000415843:458244-458345 - C-AAC------------------------------CTACAG---------------------------CATCG--------------AAT----------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------
droEug1 scf7180000408176:664539-664662 - G-TAAG------------------------------TTGAGCA--------G---CTTT--C----------TGGGGAATCCCCCTGAAATC--------TCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------
dm3 chrX:18018368-18018475 + dme-mir-969 Known_mirbase A-GT---G-------------------------------------------G---CATT--C-----------GGTGAATCCCC---AAG----------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------
droSim2 x:17118139-17118246 + dsi-mir-969 Known_mirbase A-GT---G-------------------------------------------G---CGTT--C-----------GGGGAATCCCC---AAG----------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------
droSec2 scaffold_8:326567-326674 + dse_88 confident A-GT---G-------------------------------------------G---CGTT--C-----------GAGGAATCCCC---AAG----------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------
droYak3 X:16642301-16642409 + dya_48 confident CAGT---G-------------------------------------------G---TGTT--C-----------GGGGTATCCCC---AAA----------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGG-----------------------------------------------------------------------------
droEre2 scaffold_4690:8346029-8346109 + der_63 confident -------------------------------------------------------------------------------------------------------CTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
A-GAAAGGGAAATTGAAATGCAAACTGAAATATA-A---------------------TTCCTGGAAGCCATCT--------------AGG----------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTAATCGTAGAGCCGGTATTGAAGATGACGATATGATCACATASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211110.0011011610172556012
....................................................................................................................GAGTTCCACCATGCAAGTTTT..............................................................................................................................21173.00730170350201000
..............................................................................................................................................................AAACTTGACACGTTGAGCTC.....................................................................................20128.0028220140100000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................21116.00160306070000
....................................................................................................................GAGTTCCACCATGCAAGTTT...............................................................................................................................20111.00110703010000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2218.0080301130000
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................2017.0070101140000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2215.0050302000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2214.0040100030000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................2114.0040004000000
...................................................................................................................CGAGTTCCACCATGCAAGTTTT..............................................................................................................................2214.0040103000000
.......................................................................................AGG----------AGCCTGTTCTACGTGC...................................................................................................................................................1913.0030100000002
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...................................................................................2313.0030101010000
..............................................................................................................................................................AAACTTGACACGTTGAGCT......................................................................................1912.0020001010000
.....................................................................................................................AGTTCCACCATGCAAGTTTTG.............................................................................................................................2112.0020200000000
....................................................................................................................GAGTTCCACCATGCAAGTTC...............................................................................................................................2012.0020002000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTG..................................................................................2212.0020000110000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGA...................................................................................2111.0010010000000
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1911.0010000010000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGC...................................................................................2211.0010010000000
................................................................................................................................................................ACTTGACACGTTGAGCTCG....................................................................................1911.0010100000000
................................................................................................................................................................ACTTGACACGTTGAGCTCGTGT.................................................................................2211.0010000001000
......................................................................................................................GTTCCACCATGCAAGTTTT..............................................................................................................................1911.0010001000000
....................................................................................................................GAGTTCCACCATGCAAGTTTTG.............................................................................................................................2211.0010100000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTA..................................................................................2211.0010000010000
......................................................................................................................................................GAATCCAAAAACTTGACACGTTGAGCTCC....................................................................................2911.0010010000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTT.....................................................................................2011.0010100000000
................................................................................................................................................................ACTTGACACGTTGAGCTC.....................................................................................1811.0010001000000
droPer2
A-GAAAGGCAAATTAAAATGCAAACTGAAATATA-A---------------------TTCCTGGAAGCCATCT--------------AGG----------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAG--CGTATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGGTG-CAGCCAAATCATCGCAGCGCATCCACCAGAACTACTCGTAGAGCCGGTATTGAAGATGATGATATGATCACATASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211162.00162292352733
....................................................................................................................GAGTTCCACCATGCAAGTTTT..............................................................................................................................21156.005603019322
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................21117.0017010880
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................22115.0015200850
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................20112.0012000291
..............................................................................................................................................................AAACTTGACACGTTGAGCTC.....................................................................................2019.009000360
....................................................................................................................GAGTTCCACCATGCAAGTTT...............................................................................................................................2017.007000232
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2217.007000250
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...................................................................................2317.007000331
...................................................................................................................CGAGTTCCACCATGCAAGTTTT..............................................................................................................................2217.007000340
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTG..................................................................................2213.003000120
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2212.002000020
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1912.002000020
...............................................................................................................................................................AACTTGACACGTTGAGCTCGG...................................................................................2112.002200000
....................................................................................................................GAGTTCCACCATGCAAGT.................................................................................................................................1812.002000020
.............................................................................................................................................................AAAACTTGACACGTTGAGCTC.....................................................................................2111.001000010
..............................................................................................................................................................AAACTTGACACGTTGAGCT......................................................................................1911.001000100
.....................................................................................................................AGTTCCACCATGCAAGTTTTG.............................................................................................................................2111.001010000
droWil2
T-GAAAAGAAA-T---------------------------------------------T--G-----AAAGTT--------------ACG-----TTTATATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA-CAG-----------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................2111452.00145210481217149226
...................................................................................................................TGAGTTCCACTAAGCAAGTTTT..............................................................................................................................221118.001184303108
...............................................................................................................................................................AACTTGACACGTTGAGCTCGG...................................................................................21185.0085850000
....................................................................................................................GAGTTCCACTAAGCAAGTTTT..............................................................................................................................21163.00631101249
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................22157.0057480306
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................20149.0049461002
.................................................................................................................................................................CTTGACACGTTGAGCTCGTCT.................................................................................21131.0031310000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................21126.0026251000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................21123.0023220010
..................................................................................................................ATGAGTTCCACTAAGCAAGTTT...............................................................................................................................22122.0022010021
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................22122.0022412105
...................................................................................................................TGAGTTCCACTAAGCAAGTTT...............................................................................................................................21122.0022000121
..................................................................................................................ATGAGTTCCACTAAGCAAGTT................................................................................................................................21114.0014000014
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.................................................................................2319.00990000
....................................................................................................................GAGTTCCACTAAGCAAGTTT...............................................................................................................................2017.00700016
..............................................................................................................................................................AAACTTGACACGTTGAGCTC.....................................................................................2014.00440000
.................................................................................................................................................................CTTGACACGTTGAGCTCGTCC.................................................................................2114.00440000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2214.00440000
...................................................................................................................TGAGTTCCACTAAGCAAGTT................................................................................................................................2014.00400004
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGG...................................................................................2213.00330000
.....................................................................................................................AGTTCCACTAAGCAAGTTTT..............................................................................................................................2013.00300012
..................................................................................................................ATGAGTTCCACTAAGCAAGTTTT..............................................................................................................................2313.00300003
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGC...................................................................................2213.00330000
...................................................................................................................TGAGTTCCACTAAGCAAGTTTTT.............................................................................................................................2313.00300003
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1912.00220000
...................................................................................................................TGAGTTCCACTAAGCAAGTTTTG.............................................................................................................................2312.00200002
...................................................................................................................TGAGTTCCACTAAGCAAG..................................................................................................................................1811.00100001
...................................................................................................................TGAGTTCCACTAAGCAAGTTTTA.............................................................................................................................2311.00100001
....................................................................................................................GAGTTCCACTAAGCAAGTTTTT.............................................................................................................................2211.00100001
................................................................................................................................................................ACTTGACACGTTGAGCTCGTCT.................................................................................2211.00110000
................................................................................................................................................................ACTTGACACGTTGAGCTCGTCC.................................................................................2211.00110000
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................2011.00101000
.........................................................................................................................................GGGCAT--ATTTCAAAAACAAA........................................................................................................2011.00100010
.................................................................................................................................................................CTTGACACGTTGAGCTCGTCG.................................................................................2111.00110000
.....................................................................................................TCCTGTCCTACGCATGAGTTCC............................................................................................................................................2211.00100001
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTCG.................................................................................2311.00110000
droVir3
T-TCA--------------------TGTGGTGTC-----------------G---CTTT--CAAGAGCAGCTC--------------GCG----------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CGGC----------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211262.002626787110200200004361101041146000118113000000030000000000000000022031700000033013000000
.....................................................................................................................AGTTCCACTAATCAAGTTTTG.............................................................................................................................211217.002170232000000000002110817191001916000000000000000000000000000000000010159200000000000000000
.....................................................................................................................AGTTCCACTAATCAAGTTTTGA............................................................................................................................221210.00210000000000000005027102418110917000000010000000000000000000000000000042100000000000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................221110.0011001951000000000023100126708700000001000000001000000000000000000008200000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................21197.009701901040000000025626102012600000000000000001000000000000000000003000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................22139.003904000000000000162013005400000000000000000000000000000000001002000000001000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................22137.00370421001000000080030022100000212000000000000000000000000000014300000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................20130.00302200030001000031010011000000321201000000000000000000000000204000000000000000000
.....................................................................................................................AGTTCCACTAATCAAGTTTT..............................................................................................................................20116.00160040000000000021011100000000000000000000000000000000000000006000000000000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTC.....................................................................................21114.00141210000000000004000003000000000000000000000000000000000000002000000001000000000
....................................................................................................................GAGTTCCACTAATCAAGTTTT..............................................................................................................................21114.00140020000000000021120102000000000000000000000000000000000000003000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGG...................................................................................21110.001001000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AGTTCCACTAATCAAGTTTTGAG...........................................................................................................................2319.0090000000000000040020000300000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................2117.0070402000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................GAAAACTTGACACGTTGAGCTCG....................................................................................2317.0070000000000000010103001000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.................................................................................2316.0060001000000000010000000000000111000000000000000000000000000001000000000000000000
.....................................................................................................................AGTTCCACTAATCAAGTTT...............................................................................................................................1915.0050030000000000000000000000000000000000000000000000000000000002000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTA..................................................................................2215.0050000000000000010001010000000110000000000000000000000000000000000000000000000000
....................................................................................................................GAGTTCCACTAATCAAGTTT...............................................................................................................................2014.0040000000000000000100200000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTC..................................................................................2214.0041010010000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...................................................................................2314.0040000000000000010000101100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTC.....................................................................................2014.0040100000000000020001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GTTCCACTAATCAAGTTTTG.............................................................................................................................2014.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AGTTCCACTAATCAAGTTTTT.............................................................................................................................2113.0030000000000000010010000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTCC.................................................................................2313.0030000010000000000000000000000000001000001000000000000000000000000000000000000000
.....................................................................................................................AGTTCCACTAATCAAGTTTTGT............................................................................................................................2213.0030000000000000000010000000000000000000000000000000000000000002000000000000000000
............................................................................................................................................................GAAAACTTGACACGTTGAGCT......................................................................................2112.0020000000000000000020000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGTT..................................................................................2312.0020000000000000000000001000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................AAAGTCGAAAACTTGACACGTTGAGCT......................................................................................2712.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................2012.0020010000000000000000001000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCT....................................................................................2212.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCA....................................................................................2211.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CTTGACACGTTGAGCTCGTTT.................................................................................2111.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................CGAGTTCCACTAATCAAGTTT...............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGA...................................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GAGCGG--ATTCGAAAGTCG..........................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GTTCCACTAATCAAGTTTTGA............................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AAAGTCGAAAACTTGACACGTTGAGC.......................................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGCT..................................................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGTTTT................................................................................2511.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................G--ATTCGAAAGTCGAAAACTTGA.................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GAGTTCCACTAATCAAGTT................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCGG...................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCT....................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCT......................................................................................1811.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CGAAAACTTGACACGTTGAGC.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................ACTTGACACGTTGAGCTCG....................................................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCT......................................................................................1911.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GAGTTCCACTAATCAAGTTTTG.............................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTT.....................................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCC......................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTCA.................................................................................2311.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ACTTGACACGTTGAGCTCGTC..................................................................................2111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.................................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTAAA................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000001000000000000
droMoj3
-------------------------------------------------------------------------------------------------------CTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAG--T--GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTGTGG-CA------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211260.0026078436505240
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................22135.003511021516
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................20111.00111100000
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................2018.008502001
............................................................................................................................................................AAAAACTTGACACGTTGAGCTCG....................................................................................2318.008200501
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2218.008002312
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................2117.007000070
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................2115.005201020
.....................................................................................................................AGTTCCACTAATCAAGTTTTG.............................................................................................................................2115.005201200
.....................................................................................................................AGTTCCACTAATCAAGTTTT..............................................................................................................................2014.004300100
............................................................................................................................................................AAAAACTTGACACGTTGAGCTCGT...................................................................................2414.004100102
....................................................................................................................GAGTTCCACTAATCAAGTTTT..............................................................................................................................2113.003012000
.....................................................................................................................AGTTCCACTAATCAAGTTTTGA............................................................................................................................2213.003000201
.....................................................................................................................AGTTCCACTAATCAAGTTT...............................................................................................................................1912.002001100
............................................................................................................................................................AAAAACTTGACACGTTGAGCT......................................................................................2112.002001100
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGTT..................................................................................2312.002100001
....................................................................................................................GAGTTCCACTAATCAAGTTT...............................................................................................................................2011.001000100
............................................................................................................................................................AAAAACTTGACACGTTGAGCTCGC...................................................................................2411.001000010
..................................................................................................................GCGAGTTCCACTAATCAAG..................................................................................................................................1911.001000001
...............................................................................................................................................................AACTTGACACGTTGAGCTCGG...................................................................................2111.001000010
............................................................................................................................................................AAAAACTTGACACGTTGAG........................................................................................1911.001001000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCGTT..................................................................................2411.001000100
............................................................................................................................................................AAAAACTTGACACGTTGAGCTC.....................................................................................2211.001000100
...................................................................................................................................................................TGACACGTTGAGCTCGTA..................................................................................1811.001100000
...............................................................................................................................................................AACTTGACACGTTGAGCC......................................................................................1811.001000010
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2211.001100000
droGri2
C-AT-------------------------------------------------------------------CC--------------GGG----------TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAG--CGTATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................................................................AAAAACTTGACACGTTGAGCTCG....................................................................................23143.00431330
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................21112.001266
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2215.00514
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2215.00523
.....................................................................................................................AGTTCCACTATTCAAGTTTTGA............................................................................................................................2213.00330
............................................................................................................................................................AAAAACTTGACACGTTGAGCT......................................................................................2112.00202
.....................................................................................................................AGTTCCACTATTCAAGTTTTG.............................................................................................................................2112.00220
............................................................................................................................................................AAAAACTTGACACGTTGAGCTCGT...................................................................................2412.00211
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2212.00220
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................2012.00220
...............................................................................................................................................................AACTTGACACGTTGAGCT......................................................................................1811.00110
............................................................................................................................................................AAAAACTTGACACGTTGAGC.......................................................................................2011.00110
....................................................................................................................GAGTTCCACTATTCAAGTTTT..............................................................................................................................2111.00110
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................2011.00110
............................................................................................................................................................AAAAACTTGACACGTTGAGCTC.....................................................................................2211.00110
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................2111.00110
droAna3
T-AT---T---------------------------T---------------------TTTTT-----------GGAA----------AAT----------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGATAA-------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211153.001531493802423
....................................................................................................................GAGTTCCACTAAGCAAGTTTT..............................................................................................................................21165.006540015046
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTC..................................................................................22122.0022210847
...................................................................................................................CGAGTTCCACTAAGCAAGTTTT..............................................................................................................................22113.0013100705
....................................................................................................................GAGTTCCACTAAGCAAGTTT...............................................................................................................................20111.0011000407
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.................................................................................2318.008100601
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2216.006011121
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................2015.005100220
.....................................................................................................................AGTTCCACTAAGCAAGTTTT..............................................................................................................................2013.003000300
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................2013.003300000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2212.002100010
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................2112.002010100
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGTT..................................................................................2311.001000100
..............................................................................................................................................................AAACTTGACACGTTGAG........................................................................................1711.001000100
.................................................................................................................................................................CTTGACACGTTGAGCTCGTCT.................................................................................2111.001000010
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2211.001000100
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1911.001000100
...................................................................................................................CGAGTTCCACTAAGCAAGTTT...............................................................................................................................2111.001100000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.................................................................................2311.001000100
....................................................................................................................GAGTTCCACTAAGCAAGTTTTG.............................................................................................................................2211.001000001
...................................................................................................................CGAGTTCCACTAAGCAAGTTTG..............................................................................................................................2211.001000100
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTCA.................................................................................2311.001000100
...............................................................................................................................................................AACTTGACACGTTGAGCTCGA...................................................................................2111.001000001
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................2111.001000100
droBip1
T-GT---G-----------------TCTTGTAATTT---------------------TTTTT-----------GGAA----------AAT----------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAG-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A-ACT------------------------------TTATATTTAAGATGTAAGTACAAT--A-AGTGAAAGTG--------------AAG----------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTTC-AATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAAA------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A-GCGATGGCA--------------------------------------------------C-----------GGGGAGTCCCC--GAATTCCCGGT---TCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTC----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
G-TCA--------------------------------------------------------C-----------GGGTAATCTCCCAAAAA----------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGT-TTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAA-------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
C------------------------------------------------------------------------TGGGAATCCCC--GAAA----------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-CGG-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-G----------------------------------------------------------------------------------------------------CTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCT-TGGCC---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
C-AAC------------------------------CTACAG---------------------------CATCG--------------AAT----------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
G-TAAG------------------------------TTGAGCA--------G---CTTT--C----------TGGGGAATCCCCCTGAAATC--------TCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A-GT---G-------------------------------------------G---CATT--C-----------GGTGAATCCCC---AAG----------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................................GAGTTCCACTAAGCAAGTTTT..............................................................................................................................2111843.001843000010000000000100040000000003276105100000000000000000000000110000000000000000000000220000000000440083514100121710010000000000161002048200412283500000000000000000000000000000000000011511108300321182835790112000000107000000000000000000000000000000000030000000000000003283000970400000800000000000100000000001000002350244300610000004012000000000000000001320100000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................2111512.0015120000000000000000000000100000861091101000001101100210000000000000000000000000000000000000000000040000002000000000000011230504340600500000000000009002300420000000000000002831033009116161115529520000046101000000200000000000000010112991726623044710000000211800201102602000034305011000026000130111302000114528123934130844363010719015580016212211056040917858512760011500
....................................................................................................................GAGTTCCACTAAGCAAGTTT...............................................................................................................................201219.0021900000000000000000000000000001000000000000000000000000000100000000000000000000000100000000001000010000500000000000000100203000703300000000000000000000000000000000000014130600490111110620000017000000000000000000000000000000000000000000000000001700000110000000100000000000000000000000000005492200000000001001000000000000000003400000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................20154.0054000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000004000000000000000010101000110013000001000000000000000000000000000101000000001000000001000000000001000000000000000000000000000010000002002150000300101300000000000000000920200000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................22149.0049000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000100001000000000000000000002000000000000000010100000010000000007000000000000000000000000000001000100000000000000000000000000000010000000000000000010000000000040000542000000000100000100000020000520100000100
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTATC................................................................................24138.003800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AGTTCCACTAAGCAAGTTTT..............................................................................................................................20137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000001000000000000000000000000000000000000000440000120403020000003000000000000000000000000000010000000000000000000001100000100000000000000000000000000000000000001120020000000000000000000000000000100000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000030001010100000000000000000000000000000010000100
....................................................................................................................GAGTTCCACTAAGCAAGTT................................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000100000000000000000000000000000000000000000000000000000000000001000000200000000000000000000000000000000000000000000000000000000000000000000000300000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTA..................................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000001000001100000000000000000000000001000000
....................................................................................................................GAGTTCCACTAAGCAAGT.................................................................................................................................1818.008000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AGTTCCACTAAGCAAGTTT...............................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000010000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000011000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGG...................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000
...................................................................................................................CGAGTTCCACTAAGCAAGTTTT..............................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTT.............................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTC..............................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................GAGATC--GTTTTAAAAACAAA........................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000
.......................................................................................AAG----------TCTCTGTCCTACGTCC...................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TTGACACGTTGAGCTCGTTCGT...............................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTG.............................................................................................................................2212.002000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................GTTCCACTAAGCAAGTTTT..............................................................................................................................1912.002000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CTTGACACGTTGAGCTCGTTT.................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGA...................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTG..............................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTAT.................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTTA.................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTATC...........................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................ACACGTTGAGCTCGTTCC................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTGATC..........................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
A-GT---G-------------------------------------------G---CGTT--C-----------GGGGAATCCCC---AAG----------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211913.0091359811250505134824319000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGG...................................................................................211104.001045424800000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................20158.00583931300200000001000
....................................................................................................................GAGTTCCACTAAGCAAGTTTT..............................................................................................................................21151.0051200114600000100000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................21136.0036261900000000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTT...............................................................................................................................20133.0033100003200000000000
....................................................................................................................GAGTTCCACTAAGCAAGT.................................................................................................................................18130.0030000012900000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................2115.00530100100000000000
....................................................................................................................GAGTTCCACTAAGCAAGTT................................................................................................................................1914.00400000400000000000
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT....................................................................................................2613.00330000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1913.00320000100000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTC.....................................................................................2112.00220000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2212.00210000000000100000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2212.00220000000000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2211.00110000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTAA.................................................................................2311.00100000000010000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTC.............................................................................................................................2211.00100010000000000000
......................................................................................................................................TTTGAGATC--GTTTTAAAA.............................................................................................................1811.00110000000000000000
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAA.........................................................................................................2111.00110000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.................................................................................2311.00110000000000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTC.....................................................................................2011.00110000000000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTAAA................................................................................2420.50110000000000000000
droSec2
A-GT---G-------------------------------------------G---CGTT--C-----------GAGGAATCCCC---AAG----------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211114.0011411233545
....................................................................................................................GAGTTCCACTAAGCAAGTTTT..............................................................................................................................21185.008502083
....................................................................................................................GAGTTCCACTAAGCAAGTTT...............................................................................................................................20133.003301032
.....................................................................................................................AGTTCCACTAAGCAAGTTTT..............................................................................................................................2012.0020002
.........................................................................................................................................GAGATC--GTTTTAAAAACAAA........................................................................................................2012.0020020
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2212.0020020
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2212.0020011
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTA..................................................................................2211.0010001
..................................................................................................................................................................TTGACACGTTGAGCTCGTTCGTGT-----------------------------------------------------------------------------2411.0010001
..................................................................................................................................................................TTGACACGTTGAGCTCGTTCGT...............................................................................2211.0010001
...................................................................................................................CGAGTTCCACTAAGCAAGTT................................................................................................................................2011.0010001
.....................................................................................................................AGTTCCACTAAGCAAGTTT...............................................................................................................................1911.0010001
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................2011.0010010
....................................................................................................................GAGTTCCACTAAGCAAGT.................................................................................................................................1811.0010001
droYak3
CAGT---G-------------------------------------------G---TGTT--C-----------GGGGTATCCCC---AAA----------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGG-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211393.003931431710063976120000
....................................................................................................................GAGTTCCACTAAGCAAGTTTT..............................................................................................................................21161.00611210154200000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................21127.0027402200100000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGG...................................................................................21121.0021210000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................20119.001991801000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2219.00921310110000
....................................................................................................................GAGTTCCACTAAGCAAGTTT...............................................................................................................................2019.00900001800000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2217.00730201100000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................2114.00440000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2214.00440000000000
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT....................................................................................................2613.00330000000000
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................2013.00303000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGC...................................................................................2212.00200200000000
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAAA........................................................................................................2212.00220000000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTC.....................................................................................2112.00220000000000
...............................................................................................................................................................AACTTGACACGTTGAG........................................................................................1611.00100000000010
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAAC.....................................................................................................2511.00110000000000
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAA.........................................................................................................2111.00110000000000
...................................................................................................................CGAGTTCCACTAAGCAAGTTTT..............................................................................................................................2211.00100000100000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTA.............................................................................................................................2211.00100000100000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTT.............................................................................................................................2211.00100000100000
......................................................................................................................GTTCCACTAAGCAAGTTTT..............................................................................................................................1911.00101000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTC.....................................................................................1911.00100000100000
.......................................................................................................................................TTGAGATC--GTTTTAAAAACA..........................................................................................................2011.00110000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTTA.................................................................................2311.00110000000000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGTAAA................................................................................2511.00110000000000
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.................................................................................2311.00100001000000
.........................................................................................................................................GAGATC--GTTTTAAAAACAAA........................................................................................................2011.00110000000000
....................................................................................................................GAGTTCCACTAAGCAAGTTTG..............................................................................................................................2111.00100000100000
droEre2
-------------------------------------------------------------------------------------------------------CTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGG-----------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...............................................................................................................................................................AACTTGACACGTTGAGCTCGT...................................................................................211299.002992710265821490
....................................................................................................................GAGTTCCACTAAGCAAGTTTT..............................................................................................................................211217.00217609051970
....................................................................................................................GAGTTCCACTAAGCAAGTTT...............................................................................................................................20144.004400301400
...............................................................................................................................................................AACTTGACACGTTGAGCTCG....................................................................................20111.00111000460
.....................................................................................................................AGTTCCACTAAGCAAGTTTT..............................................................................................................................2018.0080020060
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTT..................................................................................2217.0071020220
...............................................................................................................................................................AACTTGACACGTTGAGCTCGC...................................................................................2113.0030300000
..............................................................................................................................................................AAACTTGACACGTTGAGCTCGT...................................................................................2213.0030000120
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT....................................................................................................2613.0030000030
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTA..................................................................................2212.0020010010
....................................................................................................................GAGTTCCACTAAGCAAGTTTTA.............................................................................................................................2212.0020010010
..............................................................................................................................................................AAACTTGACACGTTGAGCTCG....................................................................................2111.0011000000
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCG....................................................................................2211.0010000010
.............................................................................................................................................................AAAACTTGACACGTTGAGCTCGT...................................................................................2311.0010000010
...............................................................................................................................................................AACTTGACACGTTGAGCTCGTC..................................................................................2211.0010000100
...............................................................................................................................................................AACTTGACACGTTGAGCTCGA...................................................................................2111.0010100000
....................................................................................................................GAGTTCCACTAAGCAAGTTTTG.............................................................................................................................2211.0010010000
................................................................................................................................................................ACTTGACACGTTGAGCTCGT...................................................................................2011.0011000000
.......................................................................................................................................TTGAGATC--GTTTTAAAAACAAA........................................................................................................2211.0010000010
....................................................................................................................GAGTTCCACTAAGCAAGTT................................................................................................................................1911.0010000010
....................................................................................................................GAGTTCCACTAAGCAAGTTTTT.............................................................................................................................2211.0011000000
.........................................................................................................................................GAGATC--GTTTTAAAAACAAA........................................................................................................2011.0010000010

Generated: 10/20/2015 at 07:09 PM