ID:

dps-mir-968

Coordinate:

4_group1:1722779-1722895 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

3pUTR

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.5 -31.5 -31.5

Flybase annnotation

utr3 [utr3_minus_1364]

No Repeatable elements found

Sense Strand Reads

TTCCATCAGTGCCGCGCACTCAGTAAAGTGATCGAGTTTGAATAGTGATTTAGTTCTACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCTAAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGAACTGTGCGATTAGAGTTATCAATAGGCAGGTCCTCTCAAAATAATCGGGCACCT

*************************************************************..((((..((((..((((((((((..(((((((((((((...............))))))))))))))))))).))))..)))).)))).....**************************************************************
Read size # Mismatch Hit Count Total Norm Total GSM343916

embryo

M059

embryo

M040

female body

V112

male body
GSM444067

head

M062

head

M022

male body
............................................................................TAAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 0 1 36575.00 36575 28717 6668 1169 12 8 0 1
...........................................................................TTAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 0 1 2621.00 2621 559 2020 42 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 23 0 1 1361.00 1361 278 1054 26 0 2 1 0
.............................................................................AAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 23 0 1 814.00 814 550 136 126 1 1 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTCGT.................................................................................................................... 24 0 1 504.00 504 279 214 11 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGCGGTCG..................................................................................................................... 24 1 1 449.00 449 449 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCC..................................................................................................................... 24 1 1 372.00 372 59 310 3 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 361.00 361 48 313 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAAGGGTTG..................................................................................................................... 24 3 1 333.00 333 290 42 0 0 0 1 0
............................................................................TAAGTAGTATCCATTAAGAGGT....................................................................................................................... 22 0 1 316.00 316 60 246 9 0 0 1 0
............................................................................TAAGTAGTATCCATTCAGAGGTCG..................................................................................................................... 24 1 1 259.00 259 259 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCGT.................................................................................................................... 25 0 1 244.00 244 96 136 12 0 0 0 0
...........................................................................TGAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 232.00 232 0 232 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGGCG..................................................................................................................... 24 1 1 206.00 206 204 1 1 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGTCG..................................................................................................................... 24 1 1 203.00 203 179 24 0 0 0 0 0
............................................................................TAAGTAGTAACCATTAAAAGGTCG..................................................................................................................... 24 2 1 196.00 196 176 20 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTAAGAGGTCG..................................................................................................................... 24 1 1 196.00 196 195 1 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGG........................................................................................................................ 21 0 1 191.00 191 51 128 12 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGT....................................................................................................................... 23 0 1 177.00 177 44 131 2 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAG......................................................................................................................... 20 0 1 161.00 161 87 74 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGTCC..................................................................................................................... 25 1 1 150.00 150 13 135 1 0 0 1 0
............................................................................TAAGTAGTATCCATTAAGAGGTAG..................................................................................................................... 24 1 1 129.00 129 127 2 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGCCG..................................................................................................................... 24 1 1 118.00 118 100 17 1 0 0 0 0
............................................................................TAAGGAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 113.00 113 108 5 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTTG..................................................................................................................... 24 1 1 112.00 112 106 4 2 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGAGGTCG..................................................................................................................... 24 1 1 106.00 106 99 7 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCT..................................................................................................................... 24 1 1 102.00 102 79 23 0 0 0 0 0
............................................................................TAAGTAGGATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 98.00 98 98 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGA.......................................................................................................................... 19 0 1 96.00 96 41 54 1 0 0 0 0
.....................................................................................................................ACCTTTTGATGTACTACTTTAAA............................................................................. 23 0 1 83.00 83 9 68 6 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTCGC.................................................................................................................... 24 1 1 79.00 79 7 67 5 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGC....................................................................................................................... 22 1 1 77.00 77 0 77 0 0 0 0 0
............................................................................TAAGTAGTATCTATTAAGAGGTCG..................................................................................................................... 24 1 1 75.00 75 72 3 0 0 0 0 0
............................................................................TAAGTAGTATCCCTTAAGAGGTCG..................................................................................................................... 24 1 1 71.00 71 42 29 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGTTCG..................................................................................................................... 24 1 1 68.00 68 64 4 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCGC.................................................................................................................... 25 1 1 63.00 63 7 56 0 0 0 0 0
............................................................................TTAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 60.00 60 6 54 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGATGTCG..................................................................................................................... 24 1 1 59.00 59 49 9 1 0 0 0 0
............................................................................TAAGTAGTATCAATTAAGAGGTCG..................................................................................................................... 24 1 1 58.00 58 43 15 0 0 0 0 0
............................................................................TAAGTAGCATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 58.00 58 45 12 1 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAAGTCG..................................................................................................................... 24 1 1 56.00 56 54 2 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 25 0 1 55.00 55 39 10 6 0 0 0 0
............................................................................TAAGTAGTATCCATTGAGAGGTCG..................................................................................................................... 24 1 1 54.00 54 53 1 0 0 0 0 0
.....................................................................................................................ACCTTTTGATGTACTACTTTAA.............................................................................. 22 0 1 53.00 53 12 35 6 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGG........................................................................................................................ 22 0 1 53.00 53 12 38 3 0 0 0 0
...........................................................................TTATGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 51.00 51 0 51 0 0 0 0 0
............................................................................TAAGAAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 49.00 49 38 11 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGTGGTCG..................................................................................................................... 24 1 1 47.00 47 41 6 0 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGAGGTC...................................................................................................................... 23 1 1 46.00 46 0 46 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGGGGTCG..................................................................................................................... 24 1 1 44.00 44 39 3 2 0 0 0 0
............................................................................TAATTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 44.00 44 2 42 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGACGTCG..................................................................................................................... 24 1 1 44.00 44 43 0 1 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCA..................................................................................................................... 24 1 1 43.00 43 37 6 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAACAGGTCG..................................................................................................................... 24 1 1 43.00 43 43 0 0 0 0 0 0
............................................................................TAAGTGGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 41.00 41 35 6 0 0 0 0 0
............................................................................TAAGTAGTGTCCATTAAGAGGTCG..................................................................................................................... 24 1 1 41.00 41 38 2 0 1 0 0 0
............................................................................CAAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 39.00 39 25 13 1 0 0 0 0
............................................................................GAAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 39.00 39 20 19 0 0 0 0 0
............................................................................TAAGCAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 39.00 39 29 9 1 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGACG..................................................................................................................... 24 1 1 37.00 37 24 12 1 0 0 0 0
............................................................................TAAGTAGTATCCATTCAGCGGTCG..................................................................................................................... 24 2 1 37.00 37 37 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATCAAGAGGTCG..................................................................................................................... 24 1 1 36.00 36 36 0 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTAAGCGGTCG..................................................................................................................... 24 2 1 36.00 36 36 0 0 0 0 0 0
............................................................................TAAGTAGTATGCATTAAGAGGTCG..................................................................................................................... 24 1 1 36.00 36 36 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGGCG..................................................................................................................... 24 2 1 35.00 35 35 0 0 0 0 0 0
............................................................................TAGGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 35.00 35 31 3 1 0 0 0 0
............................................................................TCAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 33.00 33 33 0 0 0 0 0 0
............................................................................TAAGTATTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 32.00 32 6 26 0 0 0 0 0
..............................................................................AGTAGTATCCATTAAGAGGTCG..................................................................................................................... 22 0 1 31.00 31 23 3 5 0 0 0 0
............................................................................TAAGTAGTATCCATTAGGAGGTCG..................................................................................................................... 24 1 1 31.00 31 29 2 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGATCG..................................................................................................................... 24 1 1 30.00 30 29 1 0 0 0 0 0
............................................................................TAAGTAGAATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 30.00 30 10 20 0 0 0 0 0
...........................................................................CTAAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 25 1 1 29.00 29 11 17 1 0 0 0 0
............................................................................TAAGTAGTATCCGTTAAGAGGTCG..................................................................................................................... 24 1 1 29.00 29 27 1 1 0 0 0 0
............................................................................AAAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 28.00 28 14 14 0 0 0 0 0
............................................................................TAAGTAGTATTCATTAAGAGGTCG..................................................................................................................... 24 1 1 28.00 28 27 1 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGTCT..................................................................................................................... 25 1 1 28.00 28 8 17 3 0 0 0 0
.....................................................................................................................ACCTTTTGATGTACTACTTTA............................................................................... 21 0 1 28.00 28 6 21 1 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGC....................................................................................................................... 23 1 1 27.00 27 0 27 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCCC.................................................................................................................... 25 2 1 27.00 27 5 22 0 0 0 0 0
............................................................................TAAGTAATATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 26.00 26 22 4 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAAAGGTCG..................................................................................................................... 24 1 1 25.00 25 19 5 1 0 0 0 0
............................................................................TAAGTAGTCTCCATTCAGAGGTCG..................................................................................................................... 24 2 1 25.00 25 25 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAAGGGTCG..................................................................................................................... 24 2 1 24.00 24 23 1 0 0 0 0 0
............................................................................TAAGTAGTACCCATTAAGAGGTCG..................................................................................................................... 24 1 1 23.00 23 18 5 0 0 0 0 0
............................................................................TAAGTAGTATCCACTAAGAGGTCG..................................................................................................................... 24 1 1 23.00 23 20 3 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAATAGGTCG..................................................................................................................... 24 1 1 22.00 22 20 2 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTGG..................................................................................................................... 24 1 1 22.00 22 19 3 0 0 0 0 0
................................................................................TAGTATCCATTAAGAGGTCG..................................................................................................................... 20 0 1 22.00 22 19 2 1 0 0 0 0
............................................................................TAAGTACTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 22.00 22 19 3 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGAC...................................................................................................................... 24 1 1 21.00 21 0 21 0 0 0 0 0
............................................................................TAAGTAGTTTCCATTAAGAGGTCG..................................................................................................................... 24 1 1 21.00 21 20 1 0 0 0 0 0
............................................................................TAAGTAGGATACATTAAGAGGTCG..................................................................................................................... 24 2 1 20.00 20 20 0 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGT....................................................................................................................... 21 0 1 20.00 20 10 10 0 0 0 0 0
............................................................................TACGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 20.00 20 13 7 0 0 0 0 0
............................................................................TAAGTAGTATCCATTACGAGGTCG..................................................................................................................... 24 1 1 19.00 19 19 0 0 0 0 0 0
............................................................................TAAGTAGGATCCATTAAGAGGGCG..................................................................................................................... 24 2 1 19.00 19 19 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCGA.................................................................................................................... 25 1 1 18.00 18 6 12 0 0 0 0 0
............................................................................TAAGTAGTATACATTTAGAGGTCG..................................................................................................................... 24 2 1 18.00 18 18 0 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTC...................................................................................................................... 22 0 1 17.00 17 3 13 1 0 0 0 0
............................................................................TAAGTAGTATCCTTTAAGAGGTCG..................................................................................................................... 24 1 1 17.00 17 17 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGCTG..................................................................................................................... 24 2 1 16.00 16 16 0 0 0 0 0 0
............................................................................TAAGTAGTATCCAGTAAGAGGTCG..................................................................................................................... 24 1 1 16.00 16 15 1 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGCTCG..................................................................................................................... 24 1 1 16.00 16 16 0 0 0 0 0 0
...........................................................................TGAAGTAGTATCCATTAAGAGGT....................................................................................................................... 23 1 1 16.00 16 0 16 0 0 0 0 0
............................................................................TAAGTAGTATCGATTAAGAGGTCG..................................................................................................................... 24 1 1 16.00 16 16 0 0 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGAGGT....................................................................................................................... 22 1 1 16.00 16 0 16 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGATGTC...................................................................................................................... 23 1 1 15.00 15 6 9 0 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGAGGGCG..................................................................................................................... 24 2 1 15.00 15 15 0 0 0 0 0 0
...........................................................................TGAAGTAGTATCCATTAAGAGGTCC..................................................................................................................... 25 2 1 15.00 15 0 15 0 0 0 0 0
......................................................................................................................CCTTTTGATGTACTACTTTAAA............................................................................. 22 0 1 15.00 15 6 8 1 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGAGGTCC..................................................................................................................... 24 2 1 14.00 14 0 14 0 0 0 0 0
...........................................................................TTAAGGAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 14.00 14 2 12 0 0 0 0 0
....................................................................................................................GACCTTTTGATGTACTACTTTA............................................................................... 22 0 1 14.00 14 4 9 1 0 0 0 0
............................................................................TAAATAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 13.00 13 12 1 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTCGTT................................................................................................................... 25 1 1 13.00 13 3 9 1 0 0 0 0
.................................................................................AGTATCCATTAAGAGGTCG..................................................................................................................... 19 0 1 13.00 13 11 1 1 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGTT...................................................................................................................... 24 1 1 13.00 13 10 3 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAACAGGTCC..................................................................................................................... 24 2 1 13.00 13 13 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGA.......................................................................................................................... 20 0 1 13.00 13 5 8 0 0 0 0 0
............................................................................TAAGTAGGATCCATTTAGAGGTCG..................................................................................................................... 24 2 1 13.00 13 13 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGAC...................................................................................................................... 23 1 1 12.00 12 0 12 0 0 0 0 0
............................................................................TAAGGAGTATCCATTAAGAGGGCG..................................................................................................................... 24 2 1 12.00 12 12 0 0 0 0 0 0
............................................................................TAAGTTGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 12.00 12 10 2 0 0 0 0 0
...........................................................................TTAAGTAGTATACATTAAGAGGTC...................................................................................................................... 24 1 1 11.00 11 1 10 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTTAGAGGTCG..................................................................................................................... 24 2 1 11.00 11 11 0 0 0 0 0 0
...........................................................................TTAAGTAGCATCCATTAAGAGGTC...................................................................................................................... 24 1 1 11.00 11 1 10 0 0 0 0 0
......................................................................................................................CCTTTTGATGTACTACTTTAAAA............................................................................ 23 0 1 11.00 11 1 10 0 0 0 0 0
...............................................................................GTAGTATCCATTAAGAGGTCG..................................................................................................................... 21 0 1 10.00 10 10 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATGAAGAGGTCG..................................................................................................................... 24 1 1 10.00 10 10 0 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGGCGT.................................................................................................................... 24 1 1 10.00 10 5 5 0 0 0 0 0
...........................................................................TGATGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 2 1 10.00 10 0 10 0 0 0 0 0
.............................................................................AGGTAGTATCCATTAAGAGGTCGT.................................................................................................................... 24 1 1 10.00 10 0 10 0 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGAGG........................................................................................................................ 21 1 1 10.00 10 0 10 0 0 0 0 0
............................................................................TAAGTAGTATACATTTAGAGGGCG..................................................................................................................... 24 3 1 10.00 10 10 0 0 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGAGGGCG..................................................................................................................... 24 2 1 9.00 9 9 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAG......................................................................................................................... 21 0 1 9.00 9 3 6 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAATAGGTC...................................................................................................................... 24 1 1 9.00 9 4 5 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTCAGCGGTCG..................................................................................................................... 24 3 1 9.00 9 9 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGATGTC...................................................................................................................... 24 1 1 9.00 9 4 5 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTT...................................................................................................................... 23 1 1 9.00 9 2 7 0 0 0 0 0
............................................................................TAAGTAGGATACATTAAGAGGGCG..................................................................................................................... 24 3 1 9.00 9 9 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGGC...................................................................................................................... 24 1 1 9.00 9 1 8 0 0 0 0 0
............................................................................TAAGAAGGATCCATTAAGAGGTCG..................................................................................................................... 24 2 1 9.00 9 9 0 0 0 0 0 0
............................................................................TAAGTAGTAGCCATTAAGAGGTCG..................................................................................................................... 24 1 1 9.00 9 8 1 0 0 0 0 0
............................................................................TAAGAAGGATACATTAAGAGGTCG..................................................................................................................... 24 3 1 9.00 9 9 0 0 0 0 0 0
............................................................................TAAGTAGTAACCATTAAGAGGTCG..................................................................................................................... 24 1 1 8.00 8 6 2 0 0 0 0 0
.............................................................................AAGCAGTATCCATTAAGAGGTCGT.................................................................................................................... 24 1 1 8.00 8 0 8 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGATGTCG..................................................................................................................... 24 2 1 8.00 8 8 0 0 0 0 0 0
............................................................................TAAGTAGCATCCATTAAGAGGTC...................................................................................................................... 23 1 1 8.00 8 2 6 0 0 0 0 0
...........................................................................TTAAGTCGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTATGAGGTCG..................................................................................................................... 24 1 1 8.00 8 8 0 0 0 0 0 0
.............................................................................AAGGAGTATCCATTAAGAGGTCG..................................................................................................................... 23 1 1 8.00 8 1 7 0 0 0 0 0
.....................................................................................................................ACCTTTTGATGTACTACTTTAAAA............................................................................ 24 0 1 8.00 8 0 8 0 0 0 0 0
............................................................................TAAGAAGTATCCATTAAGAGGGCG..................................................................................................................... 24 2 1 8.00 8 8 0 0 0 0 0 0
..........................................................................CTTAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 25 0 1 8.00 8 1 7 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTTG..................................................................................................................... 23 1 1 7.00 7 7 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAATAGGTCT..................................................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGACG..................................................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTCAGAGGTC...................................................................................................................... 24 1 1 7.00 7 7 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTA...................................................................................................................... 23 1 1 7.00 7 6 1 0 0 0 0 0
............................................................................TAAGAAGTATCCATTAAGAGGTCT..................................................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGTGGGCG..................................................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGCC...................................................................................................................... 24 1 1 7.00 7 0 7 0 0 0 0 0
............................................................................TAAGTAGGATACGTTAAGAGGTCG..................................................................................................................... 24 3 1 7.00 7 7 0 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTCC..................................................................................................................... 23 1 1 7.00 7 1 6 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGCC...................................................................................................................... 23 1 1 7.00 7 0 7 0 0 0 0 0
............................................................................TAAGGAGTATGCATTAAGAGGTCG..................................................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTACGCGGTCG..................................................................................................................... 24 2 1 7.00 7 7 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCGTT................................................................................................................... 26 1 1 7.00 7 2 5 0 0 0 0 0
...........................................................................TGAAGTAGTATCCATTAAGAGGC....................................................................................................................... 23 2 1 7.00 7 0 7 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTACGAGGTC...................................................................................................................... 24 1 1 6.00 6 6 0 0 0 0 0 0
............................................................................TATGTAGTATCCATTAAGAGGTCG..................................................................................................................... 24 1 1 6.00 6 5 1 0 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGATGTCG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGTATCTATTAAGAGGTAG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGGATCCATTTAGAGGGCG..................................................................................................................... 24 3 1 6.00 6 6 0 0 0 0 0 0
............................................................................GAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 23 1 1 6.00 6 1 5 0 0 0 0 0
...........................................................................CTAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 6.00 6 1 5 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGACGGCG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTTAGATGTCG..................................................................................................................... 24 3 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGGAGTATCCTTTAAGAGGTCG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTCAGAGGCCG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGTGGTC...................................................................................................................... 24 1 1 6.00 6 2 4 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGCCGTCG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGTGGTCG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGAGGTTG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
...........................................................................TTAAGTAGTATCCATTAAGAGGTCA..................................................................................................................... 25 1 1 6.00 6 5 1 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGGC...................................................................................................................... 23 1 1 6.00 6 5 1 0 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGTGGGCG..................................................................................................................... 24 3 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGACTTCG..................................................................................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
............................................................................TAAGTAGTATCCCTTCAGAGGTCG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTACTATCCATTAAGAGGTCT..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTCGTC................................................................................................................... 25 0 1 5.00 5 1 4 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTAC..................................................................................................................... 24 2 1 5.00 5 4 1 0 0 0 0 0
............................................................................TAAGAAGTATACATTAAGAGGTCG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTATTATCCATTAAGAGGTC...................................................................................................................... 23 1 1 5.00 5 1 3 1 0 0 0 0
............................................................................TAAGGAGTGTCCATTAAGAGGTCG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTAGTAACCATTAAAAGGTC...................................................................................................................... 23 2 1 5.00 5 0 5 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTAAGAGGCCG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
.............................................................................AAGTAGTATCAATTAAGAGGTCG..................................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
...........................................................................TTATGTAGTATCCATTAAGAGGT....................................................................................................................... 23 1 1 5.00 5 0 5 0 0 0 0 0
............................................................................TAAGAAGTATCCATTAAGAGGTAG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTTGTATACATTAAGAGGGCG..................................................................................................................... 24 3 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATAAAGAGGTCG..................................................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTAGTATCCAATAAGAGGTCG..................................................................................................................... 24 1 1 5.00 5 5 0 0 0 0 0 0
............................................................................TTAGTAGTATCCATTAAGAGGTC...................................................................................................................... 23 1 1 5.00 5 0 5 0 0 0 0 0
............................................................................TAAGTAGTATCCTTTAAGAGGTAG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTAGTATGCATTAAGAGGTTG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTAGTATCCCTTAAGCGGTCG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGGAGTATCCATTAAGAGGTAG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAC......................................................................................................................... 20 1 1 5.00 5 0 5 0 0 0 0 0
............................................................................TAAGGAGGATCCATTAAGAGGTCG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
.............................................................................AAGTAGGATCCATTAAGAGGTCG..................................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGGTG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGGCG..................................................................................................................... 23 1 1 5.00 5 3 2 0 0 0 0 0
............................................................................TAAGTAGTATCCATTCAGAGTTCG..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
..........................................................................CTTAAGTAGTATCCATTAAGAGGT....................................................................................................................... 24 0 1 5.00 5 2 3 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGTGGTCT..................................................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................TCAGTAGTATCCATTAAGCGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
...............................................................................TAAGTATCCATTAAGAGGTCG..................................................................................................................... 21 2 1 4.00 4 0 4 0 0 0 0 0
.............................................................................AACTAGTATCCATTAAGAGGTCG..................................................................................................................... 23 1 1 4.00 4 0 4 0 0 0 0 0
...........................................................................TCAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCCA.................................................................................................................... 25 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGGATCCAGTAAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAATTAGTATCCATTAAGAGGTC...................................................................................................................... 23 1 1 4.00 4 0 4 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTACGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAACATGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTTTCCATTAAGTGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGTCCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TGAGTTGTATCCATTAAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGGATCCATTAAGAGGTTG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTAGCCATTAAGAGGGCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
...........................................................................GTAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAACAGGCCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCGCT................................................................................................................... 26 2 1 4.00 4 1 3 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTAAGAGGGCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGTC...................................................................................................................... 23 1 1 4.00 4 1 3 0 0 0 0 0
..............................................................................AGTAGTATCCATTAAGAGGTCGT.................................................................................................................... 23 0 1 4.00 4 0 0 4 0 0 0 0
.............................................................................AGGTAGTATCCATTAAGAGGTCG..................................................................................................................... 23 1 1 4.00 4 1 3 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGCGGTCG..................................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCAATTAAGAGGTTG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTCACAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTTTCCATTAAGAGGGCG..................................................................................................................... 24 2 1 4.00 4 3 0 0 0 1 0 0
............................................................................TAAGTAGTATCCATTAAGAGGGCT..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTTAGAGGACG..................................................................................................................... 24 3 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGAAGTATCCATTTAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGGAGTATCCATTAAGCGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGCGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGAAGTATCCATTAAGAGGTCC..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGCGGTCC..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGACGCCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGCGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGTTTG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGTGCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGTGGTTG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
..............................................................................AGCAGTATCCATTAAGAGGTCG..................................................................................................................... 22 1 1 4.00 4 1 3 0 0 0 0 0
............................................................................AAAGTAGTATCCATTAAGAGGTAG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TGAGTAGTATCCATTAAGAGGTTG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
...........................................................................CGAAGTAGTATCCATTAAGAGGTCG..................................................................................................................... 25 2 1 4.00 4 0 4 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAACACGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGGTCGG.................................................................................................................... 25 1 1 4.00 4 0 3 1 0 0 0 0
............................................................................TGAGTAGTATACATTAAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 2 2 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGCGGGCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGTCC..................................................................................................................... 24 2 1 4.00 4 2 2 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGA.......................................................................................................................... 18 0 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTAAGAGGTCT..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAACGGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
...........................................................................TTATGTAGTATCCATTAAGAGGTCC..................................................................................................................... 25 2 1 4.00 4 0 4 0 0 0 0 0
............................................................................TAAGTGGTATCCATTAAGAGGTC...................................................................................................................... 23 1 1 4.00 4 0 4 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTCGCC................................................................................................................... 25 1 1 4.00 4 0 4 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGTAG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGGCTCCATTAAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGGATCGATTAAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTCAGAGGTCT..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGCGTTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTCTCCCTTAAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 3 1 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAACGGGTTG..................................................................................................................... 24 3 1 4.00 4 4 0 0 0 0 0 0
...........................................................................ATAAGTAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0 0
.............................................................................AAGTAGTATCCATTAAGAGGTCCC.................................................................................................................... 24 2 1 4.00 4 0 4 0 0 0 0 0
............................................................................TAAGTAGTATGCATTAAGAGGGCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTTAGGGGGCG..................................................................................................................... 24 3 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTTAGCGGTCG..................................................................................................................... 24 3 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTCAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGGAGTATCCGTTAAGAGGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGAGTTCT..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTCTCCATTAAGATGTCG..................................................................................................................... 24 2 1 4.00 4 4 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGTCT..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
...................................................................................................................................................................................................CTCTCAAAATAATCGGGCAC.. 20 0 1 3.00 3 0 3 0 0 0 0 0
............................................................................TAAGAAGTATCCATTAAGAGATCG..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
............................................................................TAAGTACTATCCATTAAGCGGTCG..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
...........................................................................TTAATTAGTATCCATTAAGAGGTC...................................................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGCGGTCT..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
............................................................................TAAGTAGTATCCATTAAGCTGTCG..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
............................................................................TAAGGAGTATCCATTAAGAGTTCG..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
............................................................................TGAGTAGTCTCCATTTAGAGGTCG..................................................................................................................... 24 3 1 3.00 3 3 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGGT....................................................................................................................... 22 1 1 3.00 3 1 2 0 0 0 0 0
............................................................................TCAGTAGTATCCATTAAGAGGTCT..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
............................................................................TAAGAAGGATCCATTAAGAGGGCG..................................................................................................................... 24 3 1 3.00 3 3 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAG......................................................................................................................... 20 1 1 3.00 3 2 1 0 0 0 0 0
............................................................................TAAGTAGTATACAGTAAGAGGTCG..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0
............................................................................TAAGTAGTATACATTAAGAGCTCG..................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0

Anti-sense strand reads

AAGGTAGTCACGGCGCGTGAGTCATTTCACTAGCTCAAACTTATCACTAAATCAAGATGTTAACGACGTCGAAGGAATTCATCATAGGTAATTCTCCAGCAGTAGATCGATTTTAGCTGGAAAACTACATGATGAAATTTTTTCGTGTCAGTTTCAGTTGTCTTGACACGCTAATCTCAATAGTTATCCGTCCAGGAGAGTTTTATTAGCCCGTGGA

**************************************************************..((((..((((..((((((((((..(((((((((((((...............))))))))))))))))))).))))..)))).)))).....*************************************************************
Read size # Mismatch Hit Count Total Norm Total M040

female body

M022

male body
V112

male body
GSM444067

head

SRR902012

CNS imaginal disc

M062

head

M059

embryo

GSM343916

embryo

...........................................................................................................................................................................................CTGTCCAGGAGAGTTTAA............ 18 2 5 36.00 180 135 33 1 6 2 3 0 0
...........................................................................................................................................................................................CTGTCCAGGAGAGTTTAAA........... 19 3 20 20.40 408 281 38 84 4 0 1 0 0
.....................................................AAGATGTTAACGAAGTTGA................................................................................................................................................. 19 2 6 1.67 10 5 0 2 0 1 0 2 0
...........................................................................................................................................................................................CTGTCCAGGAGAGTTTAAAT.......... 20 3 5 0.40 2 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................CTGTCCAGGAGAGTT............... 15 1 4 0.25 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................TAACGCGCTAATCCCAATAG.................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 1
.......................ATTTCAGTAGCTCAAAGT................................................................................................................................................................................ 18 2 7 0.14 1 1 0 0 0 0 0 0 0
........................................TTATCACTAAACCAACATAT............................................................................................................................................................. 20 3 12 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................................................CGTGTCAGTTTCCGTTATCGT..................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 4_group1:1722729-1722945 + dps-mir-968 Known_mirbase TTCCATCAGTGCCGCGCACTCAGTAAAGTGATCGAGTTTGAATAG-TG-ATTTAGT-------------------------------TCTACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGAA-CTGT-------------------------------GCGATTAGAGTTATCAA--------TAGGCAGGTCCT----------------------------------------------C--------TCAAAATAATCGGGCACCT
droPer2 scaffold_5:3483548-3483763 - dpe_27 confident TTCCATCAGTGCCGCGCAGTCAGTAAAGTGATCGAGTTTGAATAG-TG-ATTTAGT-------------------------------TCCACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGAA-CTGT-------------------------------GCGATTAGAGTTATCAA--------TAGGCAGGTCCT----------------------------------------------C--------TCAAAATAATCGGGCACCT
droWil2 scf2_1100000004585:545307-545470 + dwi_11 confident TG-----------------------------------------------------------------------------------------------ATGCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAAT-A---TAGAAAG---T--------------------ATTGAAAAAGTGTTCAT--------TTG-----------------------------------------------ATCTGGT-C--------ATTGAAAAATGTTACACTT
droVir3 scaffold_12723:5043963-5044201 - dvi-mir-968 Known_mirbase TGCACTCAGTGTGAAATGTGTCATTCAGAGAACAAGTAT-------------------TAGAGTGTGATTCTTTTTTTTTTTTTAAT---TTCAATTATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAAAT-C---GA-----------T-----------------AAG--------------ACAAACTA------------------------AAAAATTTAAATCA---TTGCTAAGGCTTGCT--G--------CAATGAAAATTGAACGCTT
droAna3 scaffold_12943:1815479-1815666 - dan_28 confident GAAAAG----------------------AGGTTGAA---------------------------------------------------TCCTAAATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAAA-A---TA------AGTTTC------------------------------------------AAGC--------AT----------TTCAAGCCAAAGTT---TTCATAAATATCTGT--G--------CAAACTAAATCATGTGTTT
droBip1 scf7180000396728:1424212-1424368 + ---------------------------------------------------------------------------------------------------GCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCAAG-T----TGAAAATATCTTCC-AAACAAT---------------------------------------------ATTATCTTCTTA----------ATA------------------T--A--------CAACTTAAATCATGTGTTT
droKik1 scf7180000302236:231949-232181 + GGGAATCAGTTCCAACTTGTGAGTGACATAGTGAAGTCCAAGTGC-TA-ATCT--------------------------------------TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGCTTT-CA---T-----------------AT-----------AGAATCACTATC-------------TTGA--------AT----------TCCTGACCTAAAATAAGGACATACATATCTGTTAA--------TTAAGAAAATCGTATGTTT
droFic1 scf7180000453925:244617-244830 + AATCATCAGTGCAGTGAAGTACGTGAAGCAAACAAGTCAAATTAA-GC-ACTTTAC-------------------------------TCAATAAATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGCTTACTACTTTAAGAAACTCTAGTTATACAGAACACT-ATTAT-------------------------------ACAAGAAAAGTGTTT--------------------------TATTTTTA----------ACA---------------------T--------ATTAAAAAATCATACGTTT
droEle1 scf7180000491338:1357083-1357289 - GGTCATCAGTTTCCAATAGTTAGTGAAGTGATTGAGTGCAAAGAA-TA-GTTTA----------------------------------CCATTAGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGTT-TA---A----AA---T--------------------ACAATAAAAG---------------------------ATTATGTTTTG-----------------------------------T--------TTAAAAAAATCATGTATTT
droRho1 scf7180000780107:332439-332650 + GGACATCATTCTCGAGTATTGAGTGCAGTGATCGAGTCCAAGGAA-TA-GTTACAG-------------------------------TGAATAAATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGTT-TA---A----A---GT--------------------------AGATTAATAAC--------TAAAATTCTGTT----------------------------------------------A--------TAAAAAAAATCATATGTTT
droBia1 scf7180000302408:2583378-2583598 + GAACATCAGTGGGGATTAGTCAGTGAATC----GTGTCCCACATCCAA-AATTAAG-------------------------------TGCAAATTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTCATT-TT---AA------AGTAATA-----------------GA--------------ACAATTTC------------------------AATATTTTA-AAA---------------------TATTTAGAATTTAGAAAATCATTTGTTT
droTak1 scf7180000414072:20142-20354 + GAACATCAGTGTGAAATAGTGAGTCAAGTAATCCAGTTCGCATAA-TA-GTTTGAG-------------------------------TCCAAATTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTACATT-TA---TT------AGTAAA-----TTGGAAA------------------------------------------ATTGTT--TTTG----------AAA---------------------T--------TTCAAAAAATCATACATTT
droEug1 scf7180000409452:319695-319888 - TAGAATCAGTCTCCAGTAGTTCTCGAAGTTAACGAGATCGAGTAA-TG-CT-------------------------------------TCATAAATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAACATT-ATTAT-------------------------------ATACAAA---------------------------------------------------------------------TTAAT--T--------TTACAAAAATCATATACTT
dm3 chr2L:13747682-13747891 - dme-mir-968 Known_mirbase GTCAATCAGTTTGTAATAGTAAGTGAAACCAATGAGTTCAAAGAA-AA-ATT----GTT------------------------------------GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACATAA---GT------AGTGATA-ATGCAAGAGT------------------------------------------ATTGTA--TCGG----------AAT---------------------T--------AATTAGAAATTATATATTT
droSim2 2l:13334230-13334459 - dsi-mir-968 Known_mirbase ATCATTCAGTTTGCAATAGTAAGTGAAATAATTGAGTTCAAAGAA-AAAATT----GTT------------------------------------CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AA---AT------AGTGATATATGTCAGAGTATTGTCGGAATAAATATAATAA--------TAATCGG---------------------------AAA---------------------T--------ATTTAGAAATTATATATTT
droSec2 scaffold_3:14527-14756 - dse_5 confident ATCATTCAGTTTGCAATAGTAAGTGAAATAATTGAGTTCAAAGAA-AAAATT----GTT------------------------------------CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AA---AT------AGTGATATATGTCAGAGTATTGTCGGAATAAATATAATAA--------TAATCGG---------------------------AAA---------------------T--------ATTTAGAAATTATATATTT
droYak3 2L:10159999-10160209 - dya_16 confident GTCATTCAGTGTGGAATAGTAAGTGAAATAGTTGAGTTCAAGGAA-AA-GTG----TTT------------------------------------GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAACATT-AA---TT------AGTTATTTATTGAAGAGC------------------------------------------ATTATGCTTCGA----------AGT---------------------T--------TTAAAAAAATTATATATTT
droEre2 scaffold_4929:11718861-11719051 + der_23 confident GTCAATCAGTTTGGAGTAGTAAGTGAAATAATTGAGTTCAAAGAA-AA-GTT----GTT------------------------------------GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAAT-AA---TT------AGTTCTATATT------------------------------------------------------------------------------------------AA---T--------TGATCAAAATTATATATCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTCCATCAGTGCCGCGCACTCAGTAAAGTGATCGAGTTTGAATAG-TG-ATTTAGT-------------------------------TCTACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAAGCACAGTCAAAGTCAACAGAA-CTGT-------------------------------GCGATTAGAGTTATCAA--------TAGGCAGGTCCT----------------------------------------------C--------TCAAAATAATCGGGCACCTSizeHit CountTotal NormTotalM022

Male-body
M040

Female-body
M059

Embryo
M062

Head
V043

Embryo
V051

Head
V112

Male-body
SRR902010

Ovary
SRR902011

Testis
SRR902012

CNS imaginal disc
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................24136575.0036575111696668028717812000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................................................2412621.0026210422020055900000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................................................2311361.0013610261054127820000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................231814.008140126136055011000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................................................241504.00504011214027900000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................................................241372.003720331005900000
.............................................................................................................TAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................................................221316.003160924616000000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................................................251244.0024401213609600000
.............................................................................................................TAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................................................211191.0019101212805100000
............................................................................................................TTAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................................................231177.001770213104400000
.............................................................................................................TAAGTAGTATCCATTAAGAG.............................................................................................................................................................................................................................201161.00161007408700000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................................................251150.001500113511300000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................................................241102.00102002307900000
.............................................................................................................TAAGTAGTATCCATTAAGA..............................................................................................................................................................................................................................19196.0096015404100000
............................................................................................................................................................ACCTTTTGATGTACTACTTTAAA...........................................................................................................................................................................23183.008306680900000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................................................24179.007905670700000
.............................................................................................................TAAGTAGTATCCATTAAGAGGC...........................................................................................................................................................................................................................22177.007700770000000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................................................25163.006300560700000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................25155.0055061003900000
............................................................................................................................................................ACCTTTTGATGTACTACTTTAA............................................................................................................................................................................22153.0053063501200000
............................................................................................................TTAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................................................22153.0053033801200000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................................................24143.004300603700000
...............................................................................................................AGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................22131.003105302300000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................................................25128.002803170800000
............................................................................................................................................................ACCTTTTGATGTACTACTTTA.............................................................................................................................................................................21128.002801210600000
............................................................................................................TTAAGTAGTATCCATTAAGAGGC...........................................................................................................................................................................................................................23127.002700270000000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCCC........................................................................................................................................................................................................................25127.002700220500000
.................................................................................................................TAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................20122.002201201900000
..............................................................................................................AAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................................................21120.0020001001000000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGA........................................................................................................................................................................................................................25118.001800120600000
..............................................................................................................AAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................................................22117.001701130300000
.............................................................................................................................................................CCTTTTGATGTACTACTTTAAA...........................................................................................................................................................................22115.00150180600000
...........................................................................................................................................................GACCTTTTGATGTACTACTTTA.............................................................................................................................................................................22114.00140190400000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCGTT.......................................................................................................................................................................................................................25113.00130190300000
..................................................................................................................AGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................19113.001301101100000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTT..........................................................................................................................................................................................................................24113.001300301000000
............................................................................................................TTAAGTAGTATCCATTAAGA..............................................................................................................................................................................................................................20113.00130080500000
.............................................................................................................................................................CCTTTTGATGTACTACTTTAAAA..........................................................................................................................................................................23111.001100100100000
................................................................................................................GTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................21110.001000001000000
............................................................................................................TTAAGTAGTATCCATTAAGAG.............................................................................................................................................................................................................................2119.0090060300000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTT..........................................................................................................................................................................................................................2319.0090070200000
............................................................................................................................................................ACCTTTTGATGTACTACTTTAAAA..........................................................................................................................................................................2418.0080080000000
...........................................................................................................CTTAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................................................2518.0080070100000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTA..........................................................................................................................................................................................................................2317.0070010600000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................................................2317.0070060100000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGTT.......................................................................................................................................................................................................................2617.0070050200000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................................................2516.0060010500000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCGTC.......................................................................................................................................................................................................................2515.0050040100000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTAC.........................................................................................................................................................................................................................2415.0050010400000
.............................................................................................................TAAGTAGTATCCATTAAGAC.............................................................................................................................................................................................................................2015.0050050000000
...........................................................................................................CTTAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................................................2415.0050030200000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCCA........................................................................................................................................................................................................................2514.0040000400000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGCT.......................................................................................................................................................................................................................2614.0040030100000
...............................................................................................................AGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................................................2314.0040400000000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGG........................................................................................................................................................................................................................2514.0040130000000
..............................................................................................................AAGTAGTATCCATTAAGA..............................................................................................................................................................................................................................1814.0040000400000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCCC........................................................................................................................................................................................................................2414.0040040000000
..................................................................................................................................................................................................................................................................................CT----------------------------------------------C--------TCAAAATAATCGGGCAC..2013.0030030000000
droPer2
TTCCATCAGTGCCGCGCAGTCAGTAAAGTGATCGAGTTTGAATAG-TG-ATTTAGT-------------------------------TCCACAATTGCTGCAGCTTCCTTAAGTAGTATCCATTAAGAGGTCGTCATCTAGCT------AAAATCGACCTTTTGATGTACTACTTTAAAAAGC-ACAGTCGAAGTCAACAGAA-CTGT-------------------------------GCGATTAGAGTTATCAA--------TAGGCAGGTCCT----------------------------------------------C--------TCAAAATAATCGGGCACCTSizeHit CountTotal NormTotalM021

Embryo
M042

Female-body
V042

Embryo
V050

Head
V057

Head
V111

Male-body
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................2414936.00493612458458601671
............................................................................................................TTAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................................................241232.00232129196060
.............................................................................................................TAAGTAGTATCCATTAAGAGGTC..........................................................................................................................................................................................................................23146.004611228140
...................................................................................................................................................................................................................................................................................T----------------------------------------------C--------TCAAAATAATCGGGCAC..19122.00221912000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................25122.00220019021
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................................................25118.00181214010
..............................................................................................................AAGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................23118.00180315000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................................................25116.00165110000
............................................................................................................TTAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................................................23116.0016608020
.............................................................................................................................................................CCTTTTGATGTACTACTTTAAA...........................................................................................................................................................................22111.00111001000
..................................................................................................................................................................................................................................................................................CT----------------------------------------------C--------TCAAAATAATCGGGCAC..2019.009900000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................................................2418.008006020
.............................................................................................................TAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................................................2117.007205000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................................................2417.007006010
............................................................................................................................................................ACCTTTTGATGTACTACTTTAA............................................................................................................................................................................2216.006105000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................................................2416.006006000
.............................................................................................................................................................CCTTTTGATGTACTACTTTAAAA..........................................................................................................................................................................2315.005401000
.................................................................................................................TAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................2015.005013010
.............................................................................................................TAAGTAGTATCCATTAAGAG.............................................................................................................................................................................................................................2014.004004000
.............................................................................................................TAAGTAGTATCCATTAAGAGGT...........................................................................................................................................................................................................................2214.004202000
............................................................................................................................................................ACCTTTTGATGTACTACT................................................................................................................................................................................1813.003300000
...............................................................................................................AGTAGTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................2212.002011000
............................................................................................................................................................ACCTTTTGATGTACTACTTTA.............................................................................................................................................................................2112.002002000
..............................................................................................................AAGTAGTATCCATTAAGAGGTCGT........................................................................................................................................................................................................................2412.002101000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTCGA........................................................................................................................................................................................................................2512.002101000
...............................................................................................................................................................TTTTGATGTACTACTTTA.............................................................................................................................................................................1812.002200000
..................................................................................................................................................................................................................................................................................................................................C--------TCAAAATAATCGGGCAC..1812.002200000
............................................................................................................................................................ACCTTTTGATGTACTACTTTAAA...........................................................................................................................................................................2312.002200000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCGC........................................................................................................................................................................................................................2612.002200000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCC.........................................................................................................................................................................................................................2512.002001010
............................................................................................................TTAAGTAGTATCCATTAAGAGGTT..........................................................................................................................................................................................................................2411.001001000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCA.........................................................................................................................................................................................................................2511.001010000
............................................................................................................TTAAGTAGTATCCATTAAGA..............................................................................................................................................................................................................................2011.001001000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTA..........................................................................................................................................................................................................................2411.001100000
............................................................................................................TTAAGTAGTATCCATTAAGAGG............................................................................................................................................................................................................................2211.001001000
............................................................................................................TTAAGTAGTATCCATTAAGAGT............................................................................................................................................................................................................................2211.001000001
.............................................................................................................TAAGTAGTATCCATTAAGAGGTA..........................................................................................................................................................................................................................2311.001001000
..............................................................................................................AAGTAGTATCCATTAAGAGG............................................................................................................................................................................................................................2011.001001000
...................................................................................................................GTATCCATTAAGAGGTCG.........................................................................................................................................................................................................................1811.001001000
............................................................................................................TTAAGTAGTATCCATTAAGAGGTCT.........................................................................................................................................................................................................................2511.001001000
.............................................................................................................TAAGTAGTATCCATTAAGAGGTAA.........................................................................................................................................................................................................................2411.001001000
droWil2
TG-----------------------------------------------------------------------------------------------ATGCAGATTCTTTAAGTAGTAACCTTTAAAGGGTCGTTTGTCCAATTCTTTTAAAGTCGATCCTTTAAGTTACTACTTGCAGAATGTGTTTCTGAAATCAACAAAT-A---TAGAAAG---T--------------------ATTGAAAAAGTGTTCAT--------TTG-----------------------------------------------ATCTGGT-C--------ATTGAAAAATGTTACACTTSizeHit CountTotal NormTotalM020

Head
M045

Female-body
V117

Male-body
V118

Embryo
V119

Head
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................241104798.001047980156010455191
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCGT........................................................................................................................................................................................................................241516.005160605100
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................231370.0037001703530
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCGT........................................................................................................................................................................................................................251355.003550203521
............................................................................................................................................................ATCCTTTAAGTTACTACTTGCA............................................................................................................................................................................221330.003300803220
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCT.........................................................................................................................................................................................................................241251.002510002510
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................................................231162.001620001620
............................................................................................................TTAAGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................................................241103.001030001030
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCA.........................................................................................................................................................................................................................241102.001020001011
...............................................................................................................AGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................22196.0096000960
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCC.........................................................................................................................................................................................................................24179.0079000790
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCGA........................................................................................................................................................................................................................25159.0059000590
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCGC........................................................................................................................................................................................................................25141.0041000410
.............................................................................................................TAAGTAGTAACCTTTAAAGGTCG..........................................................................................................................................................................................................................23130.0030000300
...........................................................................................................................................................GATCCTTTAAGTTACTACTTGC.............................................................................................................................................................................22128.0028020260
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCGTT.......................................................................................................................................................................................................................25126.0026010250
.............................................................................................................TAAGTAGTAACCTTTAAAGGGT...........................................................................................................................................................................................................................22118.0018010170
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCGC........................................................................................................................................................................................................................24118.0018000180
.....................................................................................................................................TTTGTCCAATTCTTTTAAAGTCG..................................................................................................................................................................................................23113.0013010120
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCGTT.......................................................................................................................................................................................................................26111.0011000110
............................................................................................................................................................ATCCTTTAAGTTACTACTTGC.............................................................................................................................................................................21110.0010000100
............................................................................................................TTAAGTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................25110.0010000100
.................................................................................................................TAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................20110.0010000100
.............................................................................................................TAAGTAGTAACCTTTAAAGG.............................................................................................................................................................................................................................2017.00701060
............................................................................................................................................................ATCCTTTAAGTTACTACTTGT.............................................................................................................................................................................2117.00700070
.............................................................................................................TAAGTAGTAACCTTTAAAGGG............................................................................................................................................................................................................................2116.00600060
..............................................................................................................AAGTAGTAACCTTTAAAGGGT...........................................................................................................................................................................................................................2116.00600060
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCGTA.......................................................................................................................................................................................................................2616.00600060
...............................................................................................................AGTAGTAACCTTTAAAGGGTCGTT.......................................................................................................................................................................................................................2415.00501040
...............................................................................................................AGTAGTAACCTTTAAAGGG............................................................................................................................................................................................................................1915.00500050
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTTCG........................................................................................................................................................................................................................2515.00500050
.............................................................................................................TAAGTAGTAACCTTTAAAGTCG...........................................................................................................................................................................................................................2214.00400040
............................................................................................................TTAAGTAGTAACCTTTAAAGGGT...........................................................................................................................................................................................................................2314.00400040
.............................................................................................................TAAGTAGTAACCTTTAAAG..............................................................................................................................................................................................................................1914.00400040
............................................................................................................................................................ATCCTTTAAGTTACTACTTGCT............................................................................................................................................................................2214.00400040
................................................................................................................GTAGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................2114.00400040
...........................................................................................................................................................GATCCTTTAAGTTACTACTTGT.............................................................................................................................................................................2213.00300030
.............................................................................................................................................................TCCTTTAAGTTACTACTTGCAG...........................................................................................................................................................................2213.00301020
............................................................................................................TTAAGTAGTAACCTTTAAAGGGTCT.........................................................................................................................................................................................................................2513.00300030
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCGTA.......................................................................................................................................................................................................................2512.00200020
..................................................................................................................................................................................GAATGTGTTTCTGAAATCAACAAAA-..................................................................................................................................................2512.00200020
..................................................................................................................AGTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................1912.00200020
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCGCC.......................................................................................................................................................................................................................2512.00200020
............................................................................................................................................................ATCCTTTAAGTTACTACTTGCAA...........................................................................................................................................................................2312.00200020
............................................................................................................................................................ATCCTTTAAGTTACTACTTGCAT...........................................................................................................................................................................2312.00200020
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCCA........................................................................................................................................................................................................................2512.00200020
...............................................................................................................................................................CTTTAAGTTACTACTTGC.............................................................................................................................................................................1811.00100010
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTCGTTA......................................................................................................................................................................................................................2711.00100010
..............................................................................................................AAGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................................................2211.00100010
............................................................................................................................................................ATCCTTTAAGTTACTACTTG..............................................................................................................................................................................2011.00100010
............................................................................................................................................................ATCCTTTAAGTTACTACTTGCC............................................................................................................................................................................2211.00100010
...........................................................................................................................................................GATCCTTTAAGTTACTACTTGCA............................................................................................................................................................................2311.00100010
..................................................................................................................................................................................GAATGTGTTTCTGAAATCAACA......................................................................................................................................................2211.00100010
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTG..........................................................................................................................................................................................................................2311.00100010
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTT..........................................................................................................................................................................................................................2311.00100010
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCTC........................................................................................................................................................................................................................2411.00100010
.................................................................................................................TAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................................................1911.00101000
...........................................................................................................................................................GATCCTTTAAGTTACTACTTG..............................................................................................................................................................................2111.00100010
.............................................................................................................TAAGTAGTAACCTTTAAAGGGTTT.........................................................................................................................................................................................................................2411.00100010
...............................................................................................................AGTAGTAACCTTTAAAGGGTC..........................................................................................................................................................................................................................2111.00100010
..............................................................................................................AAGTAGTAACCTTTAAAGGGTCT.........................................................................................................................................................................................................................2311.00100010
...................................................................................................................GTAACCTTTAAAGGGTCG.........................................................................................................................................................................................................................1811.00100010
..............................................................................................................AAGTAGTAACCTTTAAAGG.............................................................................................................................................................................................................................1911.00100010
droVir3
TGCACTCAGTGTGAAATGTGTCATTCAGAGAACAAGTAT-------------------TAGAGTGTGATTCTTTTTTTTTTTTTAAT---TTCAATTATACATGTGCCTTAAGTAGTAACCATTAAGAGGTTGTTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATGACAAATGCATAGCAAATCAGCAAAT-C---GA-----------T-----------------AAG--------------ACAAACTA------------------------AAAAATTTAAATCA---TTGCTAAGGCTTGCT--G--------CAATGAAAATTGAACGCTTSizeHit CountTotal NormTotalM027

Male-body
M028

Head
M047

Female-body
M061

Embryo
SRR060654

Ovary
SRR060655

Testis
SRR060656

Ovary
SRR060657

Testis
SRR060658

Ovary
SRR060659

Testis
SRR060660

Ovary
SRR060661

Embryo
SRR060662

Embryo
SRR060663

Embryo
SRR060664

Male-body
SRR060665

Female-body
SRR060666

Male-body
SRR060667

Female-body
SRR060668

Male-body
SRR060669

Female-body
SRR060670

Testis
SRR060671

Male-body
SRR060672

Female-body
SRR060673

Ovary
SRR060674

Ovary
SRR060675

Ovary
SRR060676

Ovary
SRR060677

Ovary
SRR060678

Testis
SRR060679

Testis
SRR060680

Testis
SRR060681

Testis
SRR060682

Embryo
SRR060683

Testis
SRR060684

Embryo
SRR060685

Embryo
SRR060686

Embryo
SRR060687

Embryo
SRR060688

Ovary
SRR060689

Testis
SRR1106712

embryo_0-2h
SRR1106713

embryo_0-2h
SRR1106714

embryo_2-4h
SRR1106715

embryo_4-6h
SRR1106716

embryo_4-6h
SRR1106717

embryo_6-8h
SRR1106718

embryo_6-8h
SRR1106719

embryo_8-10h
SRR1106720

embryo_8-10h
SRR1106721

embryo_10-12h
SRR1106722

embryo_10-12h
SRR1106723

embryo_12-14h
SRR1106724

embryo_12-14h
SRR1106725

embryo_14-16h
SRR1106726

embryo_14-16h
SRR1106727

larvae
SRR1106728

larvae
SRR1106729

mixed whole adult body
SRR1106730

embryo_16-30h
V047

Embryo
V053

Head
V116

Male-body
GSM1528803

follicle cells
SRR2096013

Ovary_Strain_9_oxidized
SRR2096014

Ovary_Strain_160_oxidized
SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096055

Ovary_Min_43
SRR2096056

Ovary_Min_46
SRR2096057

Ovary_Min_50
SRR2096058

Ovary_Min_98
SRR2096059

Ovary_Min_164
SRR2096060

Ovary_Min_193
SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers
SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................................................24130837.00308370071310070143622112111402404000031194274113090115028000001048191945553042360001312864972602110002200013121
............................................................................................................................................................ACCTTTTAATGTACTACTTATG............................................................................................................................................................................221979.009790005780000000000000000000000000000000710000000114121319152432272520100642100000882200000016192426
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTT.........................................................................................................................................................................................................................241776.00776000700000100000000000000000000000001000000000000000101000007650000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTT..........................................................................................................................................................................................................................231183.001830007400000000000000000000000010010012100100000100114734200017610000000000000000001
.............................................................................................................TAAGTAGTAACCATTAAGAGGT...........................................................................................................................................................................................................................221161.00161000360000000000000000000000000000000000000000023610101391019110002920000000000000000100
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGT........................................................................................................................................................................................................................25169.0069000150000000000000000000000000000001320000000000100030310002360000000000000001001
.............................................................................................................TAAGTAGTAACCATTAAGAGG............................................................................................................................................................................................................................21160.0060000120000000000000000000000000000000000000000011114553530001160000000100000000001
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTC.........................................................................................................................................................................................................................24144.004400010000000000000000000000000000000000000000000000000000000430000000000000000000
...........................................................................................................CTTAAGTAGTAACCATTAAGAGGT...........................................................................................................................................................................................................................24144.00440002000000000000000000000000000000000000000104314284335000400000000000000000000
..............................................................................................................AAGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................................................23136.003600230000000000000000000000000000000100000000000000000000000300000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTA.........................................................................................................................................................................................................................24133.003300000000001000000000000000000000000000000000000000000000000320000000000000000000
............................................................................................................................................................ACCTTTTAATGTACTACTTA..............................................................................................................................................................................20128.00280004000000000000000000000000000000100000000001104231333000100000001000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGA........................................................................................................................................................................................................................25124.002400010000000000000000000000000000000000000000000000000000000230000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGC........................................................................................................................................................................................................................25124.0024000110000000000000000000000000000000000000000000000000000000130000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGTT.......................................................................................................................................................................................................................26121.002100040000000000000000000000000000000000000000000000020100002120000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGTC.......................................................................................................................................................................................................................26121.00210005000000000000000000100000000000000000000000000001113000360000000000000000000
............................................................................................................TTAAGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................................................25118.001800000000000000000000000000000000000000000000000001000000000170000000000000000000
...............................................................................................................AGTAGTAACCATTAAGAGGTTG.........................................................................................................................................................................................................................22117.001700010000000000000000000000000000000000000000000000000000000160000000000000000000
............................................................................................................TTAAGTAGTAACCATTAAGAGGTT..........................................................................................................................................................................................................................24115.00150008000000000000000000000000000000001000000000000011000000040000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGA..............................................................................................................................................................................................................................19111.00110002000000000000000000000000000000000000000000000001000000150000001000000000010
............................................................................................................................................................ACCTTTTAATGTACTACTTAT.............................................................................................................................................................................2119.0090006000000000000000000000000000000000000000000000000000000030000000000000000000
............................................................................................................................................................ACCTTTTAATGTACTACTTATT............................................................................................................................................................................2217.0070003000000000000000000000000000000000000000000000000010000020000000000000010000
.............................................................................................................TAAGTAGTAACCATTAAGAG.............................................................................................................................................................................................................................2017.0070003000000000000000000000000000000000000000000001000000000020000000000000010000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGTTT......................................................................................................................................................................................................................2717.0070000000000000000000000000000000100000000000000001000000000050000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTC..........................................................................................................................................................................................................................2316.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGTA.......................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000001000100000000220000000000000000000
............................................................................................................................................................ACCTTTTAATGTACTACTTATC............................................................................................................................................................................2215.0050004000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................................TTAAGTAGTAACCATTAAGAGGT...........................................................................................................................................................................................................................2315.0050001000000000000000000000000000000000000000000000001010000200000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGC...........................................................................................................................................................................................................................2215.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CTTTTAATGTACTACTTATGACA.........................................................................................................................................................................2314.0040000000000000000000000000000000000000000000001000020100000000000000000000000000
.....................................................................................................................................TTGTTAGATT------TAAATCCACCTTTTAATGTACTACTTATG............................................................................................................................................................................3914.0040000000000000000000000000000000000000000000000011010100000000000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTCT.........................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
.............................................................................................................................................................CCTTTTAATGTACTACTTATG............................................................................................................................................................................2114.0040003000000000000000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................CTTAAGTAGTAACCATTAAGAGG............................................................................................................................................................................................................................2314.0040001000000000000000000000000000000000000000000000010000000110000000000000000000
...................................................................................................................GTAACCATTAAGAGGTTG.........................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000040000000000000000000
...........................................................................................................................................................CACCTTTTAATGTACTACTTATG............................................................................................................................................................................2314.0040001000000000000000000000000000000100000000000000001001000000000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTTGTCC......................................................................................................................................................................................................................2713.0030002000000000000000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................AGTAACCATTAAGAGGTTG.........................................................................................................................................................................................................................1913.0030002000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................................................................................................................CTTTTAATGTACTACTTATG............................................................................................................................................................................2013.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ACCTTTTAATGTACTACT................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000002010000000000000000000000000000
.............................................................................................................TAAGTAGTAACCATTAAGAGGTCC.........................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000020000000000000000010
droAna3
GAAAAG----------------------AGGTTGAA---------------------------------------------------TCCTAAATTATGGCAGTTTCCTTAAGTAGTATCCATTAAAGGGTCGTTAATATATT------CAAAGTGACCGTTTGATGTACTACTTTAGGTAGCTCCATTTAAAGTCGGCTAAA-A---TA------AGTTTC------------------------------------------AAGC--------AT----------TTCAAGCCAAAGTT---TTCATAAATATCTGT--G--------CAAACTAAATCATGTGTTTSizeHit CountTotal NormTotalM044

Female-body
M058

Embryo
V039

Embryo
V055

Head
V105

Male-body
V106

Head
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................................................2412167.00216734691629111441
.............................................................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................201243.00243023310000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................231201.00201015942000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAG............................................................................................................................................................................22161.00610538000
.............................................................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................22150.00500409001
.............................................................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................................................19149.00490409000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................................................24134.00340133000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................24127.00270261000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCC.........................................................................................................................................................................................................................24124.00240519000
.............................................................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................21121.00210201000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGG...........................................................................................................................................................................2219.009063000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................2419.009007002
.............................................................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................2318.008116000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCGC........................................................................................................................................................................................................................2517.007043000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCGT........................................................................................................................................................................................................................2516.006042000
...............................................................................................................AGTAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................................................2216.006024000
............................................................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................2316.006051000
............................................................................................................TTAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................2115.005050000
............................................................................................................................................................ACCGTTTGATGTACTACTTTA.............................................................................................................................................................................2114.004040000
.............................................................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................................................1814.004013000
..............................................................................................................AAGTAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................................................2314.004022000
.............................................................................................................TAAGTAGTATCCATTAAAGGGC...........................................................................................................................................................................................................................2213.003030000
............................................................................................................................................................ACCGTTTGATGTACTACC................................................................................................................................................................................1812.002020000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCA.........................................................................................................................................................................................................................2412.002002000
.............................................................................................................TAAGTAGTATCCATTAAAC..............................................................................................................................................................................................................................1912.002020000
..............................................................................................................AAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................2212.002020000
..............................................................................................................AAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................2012.002020000
.............................................................................................................TAAGTAGTATCCATTAAAGC.............................................................................................................................................................................................................................2012.002020000
............................................................................................................TTAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................2212.002020000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAC............................................................................................................................................................................2211.001010000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAGT...........................................................................................................................................................................2311.001010000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................................................2511.001010000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTG..........................................................................................................................................................................................................................2311.001001000
.............................................................................................................TAAGTAGTATCCATTAAAGTCG...........................................................................................................................................................................................................................2211.001010000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................................................2411.001001000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGT...........................................................................................................................................................................2211.001010000
..............................................................................................................................................................CGTTTGATGTACTACTTTAG............................................................................................................................................................................2011.001010000
.................................................................................................................TAGTATCCATTAAAGGGTCG.........................................................................................................................................................................................................................2011.001001000
droBip1
---------------------------------------------------------------------------------------------------GCAGTTTCTTTAAGTAGTATCCATTAAAGGGTCGTTAACATATTT-----AAAATTGACCATTTAATGTACTACTTTGAGTAACTCCATATAAAGTCGTCCAAG-T----TGAAAATATCTTCC-AAACAAT---------------------------------------------ATTATCTTCTTA----------ATA------------------T--A--------CAACTTAAATCATGTGTTTSizeHit CountTotal NormTotal
No Reads
droKik1
GGGAATCAGTTCCAACTTGTGAGTGACATAGTGAAGTCCAAGTGC-TA-ATCT--------------------------------------TCGGTATTGCAGTCTCTCTAAGTAGTATCCATTAAAGAGTCGTGATTATATT------CAAATCGACCTTGTGGTTTACTACCTTAAGAAACTTCAGTTTATTCCGGCTTT-CA---T-----------------AT-----------AGAATCACTATC-------------TTGA--------AT----------TCCTGACCTAAAATAAGGACATACATATCTGTTAA--------TTAAGAAAATCGTATGTTTSizeHit CountTotal NormTotal
No Reads
droFic1
AATCATCAGTGCAGTGAAGTACGTGAAGCAAACAAGTCAAATTAA-GC-ACTTTAC-------------------------------TCAATAAATACTGCAGATTCCTTAAGTAGTAACCATTAAAGGGTTGTTAATCAGAT------AAATCCAACCTTATGGCTTACTACTTTAAGAAACTCTAGTTATACAGAACACT-ATTAT-------------------------------ACAAGAAAAGTGTTT--------------------------TATTTTTA----------ACA---------------------T--------ATTAAAAAATCATACGTTTSizeHit CountTotal NormTotal
No Reads
droEle1
GGTCATCAGTTTCCAATAGTTAGTGAAGTGATTGAGTGCAAAGAA-TA-GTTTA----------------------------------CCATTAGAACTGCAGCTTCCTTAAGTAGTAACCATTAAAGGGTTGTCAAAATAAT------TGAACCAACCATTTAATGTACTACTTTAAGAAACTCCAGACCATGCCAGTGTT-TA---A----AA---T--------------------ACAATAAAAG---------------------------ATTATGTTTTG-----------------------------------T--------TTAAAAAAATCATGTATTTSizeHit CountTotal NormTotal
No Reads
droRho1
GGACATCATTCTCGAGTATTGAGTGCAGTGATCGAGTCCAAGGAA-TA-GTTACAG-------------------------------TGAATAAATTCTGCAGCTTCTTTAAGTAGTAACCATTAAAGGGTTGTTATAAAAAT------TGAGCCAACCATTTAATGTACTACTTTAATAATCTCCAGACAATGTCGCCGTT-TA---A----A---GT--------------------------AGATTAATAAC--------TAAAATTCTGTT----------------------------------------------A--------TAAAAAAAATCATATGTTTSizeHit CountTotal NormTotal
No Reads
droBia1
GAACATCAGTGGGGATTAGTCAGTGAATC----GTGTCCCACATCCAA-AATTAAG-------------------------------TGCAAATTTCTTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTCATTATAAT------AAAATCAACCGTTTGATGTACTACTTTAAGAAACTGCAGTCCATTTCTTCATT-TT---AA------AGTAATA-----------------GA--------------ACAATTTC------------------------AATATTTTA-AAA---------------------TATTTAGAATTTAGAAAATCATTTGTTTSizeHit CountTotal NormTotal
No Reads
droTak1
GAACATCAGTGTGAAATAGTGAGTCAAGTAATCCAGTTCGCATAA-TA-GTTTGAG-------------------------------TCCAAATTTATTGCAGTTTCCTTAAGTAGTAACCATTAAAGGGTTGTTATTATAAT------AAAACCAACCGTTTGATGTACTACTTCAAGAAACTCCAGTCCTCTTTTACATT-TA---TT------AGTAAA-----TTGGAAA------------------------------------------ATTGTT--TTTG----------AAA---------------------T--------TTCAAAAAATCATACATTTSizeHit CountTotal NormTotal
No Reads
droEug1
TAGAATCAGTCTCCAGTAGTTCTCGAAGTTAACGAGATCGAGTAA-TG-CT-------------------------------------TCATAAATATTGCGGATTCTTTAAGTAGTAACCATTAAAGGGTTGTTCCTATAAG------ATAATCAACCTTTTGATGTACTACTTTAAGAAGCTGTAGTCGAATTCAACATT-ATTAT-------------------------------ATACAAA---------------------------------------------------------------------TTAAT--T--------TTACAAAAATCATATACTTSizeHit CountTotal NormTotal
No Reads
dm3
GTCAATCAGTTTGTAATAGTAAGTGAAACCAATGAGTTCAAAGAA-AA-ATT----GTT------------------------------------GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCTTTTGATGTACTACTTTAAGAATCTCCAGTTAAAGTCAACACATAA---GT------AGTGATA-ATGCAAGAGT------------------------------------------ATTGTA--TCGG----------AAT---------------------T--------AATTAGAAATTATATATTTSizeHit CountTotal NormTotalGSM154618

Ovary
GSM154620

Ovary
GSM154621

Ovary
GSM154622

Ovary
GSM180328

Head
GSM180329

Mixed-body
GSM180330

Embryo
GSM180331

Embryo
GSM180332

Embryo
GSM180333

Embryo
GSM180334

Larvae
GSM180335

Disc
GSM180336

Pupae
GSM180337

S2
GSM239041

Head
GSM239050

Head
GSM239051

S2
GSM239052

S2
GSM246084

Head
GSM266765

S2
GSM280082

Ovary
GSM280083

Ovary
GSM280084

Ovary
GSM280085

Testis
GSM280086

Ovary
GSM280087

S2-NP
GSM280088

S2-NP
GSM312995

Head
GSM313160

Head
GSM313161

Head
GSM313162

Head
GSM313163

Head
GSM313164

Head
GSM313165

Head
GSM343287

Embryo
GSM379050

Ovary
GSM379051

Ovary
GSM379052

Ovary
GSM379053

Ovary
GSM379054

Ovary
GSM379055

Ovary
GSM379056

Ovary
GSM379057

Ovary
GSM379058

Ovary
GSM379059

Ovary
GSM379060

Ovary
GSM379061

Ovary
GSM379062

Ovary
GSM379063

Ovary
GSM379064

Ovary
GSM379065

Ovary
GSM379066

Ovary
GSM379067

Ovary
GSM424739

S2
GSM424740

S2
GSM424741

S2
GSM467729

Female-body
GSM467730

Female-body
GSM467731

Female-body
M002

CS
M003

Male-body
M004

Male-body
M005

ML-DmD32
M006

ML-DmD32
M029

OSC
M030

OSC
M031

OSC
M032

S2-R+
M033

S2-R+
M034

S2-R+
M035

S2-R+
M036

S2-R+
M037

S2-R+
M038

S2-R+
M039

S2-R+
M048

S2-R+
OSS2

OSS
OSS6

OSS
OSS7

OSS
OSS8

OSS
S1

Head
S10

Embryo
S11

Embryo
S12

Embryo
S13

Embryo
S14

Embryo
S15

S2-GMR
S16

Kc
S17

Larvae
S18

Larvae
S19

Pupae
S2

Head
S20

Pupae
S21

Disc
S22

Head
S23

Female-body
S24

Male-body
S25

Larvae
S26

Larvae
S27

Pupae
S28

Pupae
S29

Head
S3

Male-body
S30

S2-GMR
S31

S2
S32

S2
S33

Kc
S34

Kc
S35

Kc
S4

Female-body
S5

Disc
S6

Embryo
S7

Embryo
S8

S2
S9

Embryo
SRR001337

Head
SRR001338

Head
SRR001339

Head
SRR001340

Head
SRR001341

Head
SRR001342

Head
SRR001343

Head
SRR001344

Head
SRR001345

Head
SRR001346

Head
SRR001347

Head
SRR001348

Head
SRR001349

Head
SRR001664

Head
SRR010951

Ovary
SRR010952

Ovary
SRR010953

Ovary
SRR010954

Ovary
SRR010955

Ovary
SRR010956

Ovary
SRR010957

Ovary
SRR010958

Ovary
SRR010959

Ovary
SRR010960

Ovary
SRR014268

Embryo
SRR014269

Embryo
SRR014270

Embryo
SRR014271

Embryo
SRR014272

Embryo
SRR014273

Ovary
SRR014274

Ovary
SRR014275

Ovary
SRR014276

Ovary
SRR014277

Ovary
SRR014278

Ovary
SRR014279

Ovary
SRR014280

Ovary
SRR014281

Ovary
SRR014282

Ovary
SRR023197

S2
SRR023399

S2
SRR023400

S2
SRR023402

S2
SRR023407

S2
SRR029028

S2
SRR029029

S2
SRR029030

S2
SRR029031

S2
SRR029032

S2
SRR029033

S2
SRR029608

Head
SRR029633

Head
SRR030145

gb3
SRR031692

Head
SRR031693

Head
SRR031694

Head
SRR031696

Head
SRR031697

Head
SRR031698

Head
SRR031699

Head
SRR031700

Head
SRR031701

Head
SRR031702

Head
SRR031703

Head
SRR031704

Head
SRR032092

S2
SRR032093

S2
SRR032094

S2
SRR032095

S2-NP
SRR032096

S2-NP
SRR032152

Head
SRR060643

Testis
SRR060644

Ovary
SRR060645

Testis
SRR060646

Ovary
SRR060647

Ovary
SRR060648

Ovary
SRR060649

Ovary
SRR060650

Testis
SRR060651

Ovary
SRR060652

Testis
SRR060653

Ovary
SRR065151

Ovary
SRR065152

Ovary
SRR065153

Ovary
SRR065154

Ovary
SRR065155

Ovary
SRR065800

Ovary
SRR065801

Ovary
SRR065802

Ovary
SRR065803

Ovary
SRR065804

Ovary
SRR065805

Ovary
SRR065806

Ovary
SRR065807

Ovary
SRR097865

S2-NP
SRR097866

S2-NP
SRR097867

S2-NP
SRR298536

Ovary
SRR298537

Ovary
SRR298711

Ovary
SRR298712

Ovary
SRR317110

Ovary
SRR317111

Ovary
SRR317112

Ovary
SRR317113

Ovary
SRR317114

Ovary
SRR317115

Ovary
SRR317116

Ovary
SRR317117

Ovary
SRR341115

S2
SRR341116

S2
SRR341117

S2
SRR341118

S2
SRR351332

Mixed-body
SRR351333

Mixed-body
T004

OSC
T005

CME-L1
V001

Embryo
V002

Embryo
V003

S2
V006

Female-body
V007

Head
V008

S2
V009

CME-L1
V010

ML-DmD20-C5
V011

Sg4
V012

Male-body
V013

Head
V014

DTT
V015

DreRFHV
V018

Kc167
V019

GM2
V020

S2-R+
V021

ML-DmD21
V022

ML-DmD32
V023

Head
V024

Kc167
V025

S2-R+
V026

1182-2H
V027

ML-DmD21
V028

CME-W1-Cl.8+
V029

ML-DmD9
V030

ML-DmD8
V031

GM2
V032

S1
V033

CME-W1-Cl.8+
V034

ML-DmD16-C3
V035

ML-DmD32
V036

ML-DmD20-C5
V037

S2
V038

S2
V063

Ovary
V0632

Ovary
V064

Ovary
V0642

Ovary
V065

Ovary
V0652

Ovary
V066

Ovary
V0662

Ovary
V067

S2-NP
V073

mbn2
V074

S3
V075

ML-DmBG1-C1
V076

ML-DmBG3-C2
V077

Head
V078

Head
V079

Head
V080

Head
V081

Embryo
V082

Embryo
V083

Male-body
V084

Female-body
V085

CME-W2
V086

Female-body
V088

Ovary
V0882

Ovary
V089

Ovary
V0892

Ovary
V090

Male-body
V091

fGS/OSS
V092

Male-body
V093

Male-body
V094

S2-R+
V095

S2-R+
V096

Ovary
V097

Ovary
V098

Ovary
V125

ML-DmD9
V126

CME-L1
V127

G2
V128

S3
V129

ML-DmBG1-C1
V130

ML-DmBG3-C2
V131

ML-DmD16-C3
V132

ML-DmD32
V133

Sg4
V134

ML-DmD8
V135

CME-W2
V136

Male-body
V137

Head
V138

Male-body
V139

Female-body
V140

Female-body
V141

Female-body
V142

Female-body
V144

OSC
V145

S2
V146

S1
V147

1182-2H
V148

mbn2
GSM1528798

follicle cells
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................241209122.0020912200000001522800000000000000061000000012120031002051100011120001000000000000000000000000055363523350002040052054210000060000247105027013010025030100000001000554644408833632416041411977320000000000029080081607010100003050002000002610000023003100100138213031505208030003200001664679564040301212656920001441105124121047153426483021401021274011011220159292471401088526443925009011714110325101013457314416123141882930021000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................2314655.0046550000000000000000000000000010000210000000101030000000000000000000000000000000000003114000000000000000000000000005000000000000000000000000000191892392410000001010000000000010100020001002000000000000020000000000000000001010300001112600100000217102110010010531000001500001000031510723000000037000103351179359910310000102000211200000422000160121970000200
............................................................................................................................................................ACCTTTTGATGTACTACTTTAA............................................................................................................................................................................2212239.002239000010122225000000000000000000000000100000000000000000000030000000000000000000000011744069476790020100010005110300000000016880054000000000000000000000000500260000000000000000000000010000000000000000000000000000000000000000000000000000000400100100001890000000000000000200000000000000000000000000000000565000000000000000000000000100000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................................................2511719.00171900000000100000000000000000000000001000000000000000000000000000000000000000000000012241000000000100000000000000003500000000000000000000000000784280100000000000000000000010000000000000000000000000000014000000000000000001000000010760040000201116100000000400000010000100000400201500000001000000010190100501000000000000000000000600000104440000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................2211047.001047000000001000000000000000000000000060000000001000100000000000000000000000000000000001000000000000000000000000000200000000000000000000000000012343012000010000000000000000100000000020000000000000000000000000000000000000001000001033008000069510000000015000000100000000006001640000000000000000098667000000000000000010110001300000206730001010
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................241676.0067600000000010000000000000000000000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000003329100000010000000000000000000000000000000000020000000000000000000000000100000000001002000000020175000000000910000010000000000100273000000000000000007322700100000000000000000000300000002210000000
...............................................................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................221541.0054100000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000002000000000000000000000000000012010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000533100000000020000001000000000000021000000000000000001842100100000000000000000000000000000010000000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................241472.00472000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007600000000010000000000000000000000000000000000000005439410000000000000000000000000000000200000000
............................................................................................................................................................ACCTTTTGATGTACTACTTTA.............................................................................................................................................................................211436.00436000000004300000000000000000000000020000000000000000000000010000000000000000000000251150143400000000200010030000020003511080000000000000000000000002030100000000000000000000000000000000000000000000000000000000000000000000000000000010020000000530000000000000000000000000000000000000000000000000131100000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................................................251372.003720000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000027003000000000000000000000000000000000000000000000000000000000000000000000001000001011000000029130000000108000000000000000011006600000011000000000926700200000001000000000000600000000020000000
.............................................................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................201307.00307000000000000000000000000000000000061000000000000000000000000000000000000000000000000610000000000000000000000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000001000000000000000000000422510000000000000000000000100000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................211292.00292000000000100000000000000000000000057000000000000000000000000000000000000000000000020420000000000001000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000010100040000770000000002000000000000000000000100000000000000000719200000000000000000000000000000000010000000
..............................................................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................231266.00266000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001160000000000000000000000100000010000000000000000000000000000000000000000000000000000000000006400000000010000001000000000000031000000000000000004419400000000000000000000000000000000100000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................................................241198.0019800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001221000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000171200000000000000000000000000000010000000000000000014011900000000000000000000000000000000100000000
.............................................................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................................................191162.0016200000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000370000000000000000000000000000000000000000000000000214400000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................................................251151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021108100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000169001000000000000010000000000000100100000000000000019800000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................................................181127.0012700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000000000000000000001000000000000000000012300000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................................................24197.0097000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001230000000002100000000000000001000000000000000000000145500000000000000000000000100010000000000000
.................................................................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................20151.005100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000124000000000000000000000000000000000000000000000000042800000000000000000000000000000000000000000
............................................................................................................................................................ACCTTTTGATGTACTACTTTAAA...........................................................................................................................................................................23147.00470000000000000000000000000000000000000000000000000000000000000000000000000000000003230400000000010000010000000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................CCTTTTGATGTACTACTTTAA............................................................................................................................................................................21130.00300000001001000000000000000000000000000000000000000000000000000000000000000000000002031300000000000000000000000000810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................AACCTTTTGATGTACTACTTTAA............................................................................................................................................................................23125.00250000000001000000000000000000000000000000000000000000000000000000000000000000000003041000000000000000000000000000330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................................................26125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000010000000000000100000000000000000031200000000000000000000000100000000000000000
................................................................................................................GTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................21124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000011900000000000000000000000000000000000000000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................25121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
...............................................................................................................AGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................21120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................19116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004300000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000031000000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGTA.......................................................................................................................................................................................................................26115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020400100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001600000000000000000000000000000000000000000
...................................................................................................................GTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................23111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
...........................................................................................................................................................AACCTTTTGATGTACTACTTTA.............................................................................................................................................................................22110.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................ACCTTTTGATGTACTACTTTAAC...........................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002800000000000000000000000000000000000000000
..............................................................................................................................................................CTTTTGATGTACTACTTTAA............................................................................................................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000050200000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
droSim2
ATCATTCAGTTTGCAATAGTAAGTGAAATAATTGAGTTCAAAGAA-AAAATT----GTT------------------------------------CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AA---AT------AGTGATATATGTCAGAGTATTGTCGGAATAAATATAATAA--------TAATCGG---------------------------AAA---------------------T--------ATTTAGAAATTATATATTTSizeHit CountTotal NormTotalM023

Head
M024

Male-body
M025

Embryo
M053

Female-body
O001

Testis
O002

Head
SRR553485

Ovary
SRR553486

Ovary
SRR553487

Ovary
SRR553488

Ovary
SRR618934

Ovary
V044

Embryo
SRR902008

Ovary
SRR902009

Testis
SRR1275487

Male larvae
SRR1275485

Male prepupae
SRR1275483

Male prepupae
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................24148314.00483142819224941610220233521222503900000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAG............................................................................................................................................................................2211621.0016211213092000000030700000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................231600.0060000332050096054500000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGG...........................................................................................................................................................................221172.001720016700000000500000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................241161.001610051000000015500000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................................................251119.0011900661000011703400000
.............................................................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................221113.001130046102007605100000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................24186.0086001000000108400000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................................................25174.007400510000221303300000
..........................................................................................................................................................CAACCGTTTGATGTACTACTTT..............................................................................................................................................................................22174.0074007300000000100000
............................................................................................................................................................ACCGTTTGATGTACTACTTTA.............................................................................................................................................................................21157.00571046000000001000000
.............................................................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................20154.00540022007003401800000
..............................................................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................23148.00480014900000002500000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAGA...........................................................................................................................................................................23143.00430031000000001200000
.............................................................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................................................19131.00310011001200030500000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................................................24130.00300013000001001600000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................................................25125.0025006000000001900000
.............................................................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................21123.002300500700210800000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................................................24120.0020004000000001600000
...............................................................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................22120.0020001310000000600000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAG............................................................................................................................................................................21119.0019001600000000300000
...........................................................................................................................................................AACCGTTTGATGTACTACTTTAG............................................................................................................................................................................23119.0019001600000000300000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAGC...........................................................................................................................................................................23118.0018001700000000100000
.............................................................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................................................18117.0017002001300100100000
..........................................................................................................................................................CAACCGTTTGATGTACTACTTTAG............................................................................................................................................................................24111.0011001100000000000000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGT...........................................................................................................................................................................2219.00900700000000200000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGG........................................................................................................................................................................................................................2517.00700600000000100000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGA...........................................................................................................................................................................2217.00700700000000000000
.................................................................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2017.00700500000000200000
............................................................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................2316.00600200000000400000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAT............................................................................................................................................................................2216.00600100000000500000
..................................................................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................1915.00500200000000300000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGGT..........................................................................................................................................................................2315.00500300000000200000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAA............................................................................................................................................................................2214.00400200000200000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGG...........................................................................................................................................................................................................................2214.00400300000000100000
............................................................................................................................................................ACCGTTTGATGTACTACTTT..............................................................................................................................................................................2014.00400300000000100000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAC............................................................................................................................................................................2214.00400400000000000000
...................................................................................................................GTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................1814.00400300000000100000
.............................................................................................................................................................CCGTTTGATGTACTACTT...............................................................................................................................................................................1813.00300300000000000000
...............................................................................................................................................................GTTTGATGTACTACTTTAG............................................................................................................................................................................1913.00300300000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGTA.......................................................................................................................................................................................................................2613.00300000000000300000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................................................2413.00300000000000300000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGC...........................................................................................................................................................................2213.00300300000000000000
.......................................................................................................................................................AATCAACCGTTTGATGTACTACT................................................................................................................................................................................2312.00200200000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGGCT.........................................................................................................................................................................................................................2412.00200000000000200000
............................................................................................................................................................ACCGTTTGATGTACTACTTTAGG...........................................................................................................................................................................2312.00200200000000000000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2512.00200100000000100000
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGGC..........................................................................................................................................................................2312.00200200000000000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTG..........................................................................................................................................................................................................................2312.00200100000000100000
droSec2
ATCATTCAGTTTGCAATAGTAAGTGAAATAATTGAGTTCAAAGAA-AAAATT----GTT------------------------------------CATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTTCTCAACATG-----CAAATCAACCGTTTGATGTACTACTTTAGGAATCTACAGTCAAAGTCAACATT-AA---AT------AGTGATATATGTCAGAGTATTGTCGGAATAAATATAATAA--------TAATCGG---------------------------AAA---------------------T--------ATTTAGAAATTATATATTTSizeHit CountTotal NormTotalM054

Female-body
V113

Male-body
V114

Embryo
V115

Head
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................241129769.001297691346129123506
.............................................................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................2312934.00293432291415
............................................................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................241683.00683106793
.............................................................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................221430.00430014263
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................................................251409.00409104062
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................................................251351.00351003510
.............................................................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................201138.00138001380
..............................................................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................231125.001251101131
.............................................................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................211116.00116001160
............................................................................................................................................................ACCGTTTGATGTACTACTTTAG............................................................................................................................................................................221108.00108101070
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................................................25198.009800980
...............................................................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................22185.008500850
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................................................24173.007310711
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................24145.004510440
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................................................24142.004200420
.................................................................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................20135.003510340
.............................................................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................................................19131.003100310
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTTG........................................................................................................................................................................................................................25130.003000300
............................................................................................................TTAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................23118.001800180
............................................................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................25118.001800180
............................................................................................................................................................ACCGTTTGATGTACTACTTTA.............................................................................................................................................................................21111.001110100
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGTA.......................................................................................................................................................................................................................26110.00100190
................................................................................................................GTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2119.0091080
...............................................................................................................AGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................2118.0080080
.............................................................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................2317.0070070
.............................................................................................................................................................CCGTTTGATGTACTACTTTAGG...........................................................................................................................................................................2217.0070070
.............................................................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................................................1817.0070070
.....................................................................................................................................TTCTCAACATG-----CAAATCA..................................................................................................................................................................................................1815.0050050
...................................................................................................................GTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................1814.0040040
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGG........................................................................................................................................................................................................................2514.0040040
............................................................................................................................................................ACCGTTTGATGTACTACTTTAGT...........................................................................................................................................................................2313.0030030
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGAA.......................................................................................................................................................................................................................2613.0030030
...............................................................................................................AGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................................................2313.0030030
............................................................................................................................................................ACCGTTTGATGTACTACTTAG.............................................................................................................................................................................2112.0020020
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................................................2612.0020020
............................................................................................................TTAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................2512.0020020
............................................................................................................................................................ACCGTTTGATGTACTACTTTAGC...........................................................................................................................................................................2312.0020020
..........................................................................................................................................................CAACCGTTTGATGTACTACTTT..............................................................................................................................................................................2212.0020020
..................................................................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................1912.0020020
...............................................................................................................AGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................................................2412.0020020
...............................................................................................................AGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................2012.0021010
..............................................................................................................AAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................2212.0020020
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGACT......................................................................................................................................................................................................................2711.0010010
.................................................................................................................TAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................................................2011.0010010
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGAC.......................................................................................................................................................................................................................2611.0010010
.........................................AGAA-AAAATT----GTT------------------------------------CATGGAAGCT.....................................................................................................................................................................................................................................................2311.0010010
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTTGC.......................................................................................................................................................................................................................2611.0010010
droYak3
GTCATTCAGTGTGGAATAGTAAGTGAAATAGTTGAGTTCAAGGAA-AA-GTG----TTT------------------------------------GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------AAGATCAACCTTTTGATTTACTACTTTAGGAATCTCCAGTCAAAGTCAACATT-AA---TT------AGTTATTTATTGAAGAGC------------------------------------------ATTATGCTTCGA----------AGT---------------------T--------TTAAAAAAATTATATATTTSizeHit CountTotal NormTotalM026

Head
M043

Female-body
M056

Embryo
V046

Embryo
V052

Head
V058

Head
V120

Male-body
SRR1275488

Male larvae
SRR1275486

Male prepupae
SRR1275484

Male prepupae
GSM1528802

follicle cells
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................24120896.0020896234563715169144000000
............................................................................................................................................................ACCTTTTGATTTACTACTTTAG............................................................................................................................................................................221822.0082201796250000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................231416.00416011922201200000
.............................................................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................221173.0017300138350000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................................................251116.001160196190000000
............................................................................................................................................................ACCTTTTGATTTACTACTTTAGT...........................................................................................................................................................................231102.001020088140000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................24175.0075008651100000
.............................................................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................20144.0044004130000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................................................25144.0044004040000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGC...........................................................................................................................................................................................................................22140.0040004000000000
............................................................................................................................................................ACCTTTTGATTTACTACTTTAGC...........................................................................................................................................................................23128.0028002800000000
.............................................................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................21128.0028002260000000
............................................................................................................................................................ACCTTTTGATTTACTACTTTAGA...........................................................................................................................................................................23120.0020002000000000
..............................................................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................23120.0020034130000000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................24120.0020001370000000
............................................................................................................................................................ACCTTTTGATTTACTACTTTA.............................................................................................................................................................................21117.0017011600000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................................................25117.0017001070000000
..................................................................................................................................................................................GAATCTCCAGTCAAAGTCAAC.......................................................................................................................................................21117.0017001610000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................................................24116.0016002140000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................23115.0015001500000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................................................24115.001500590100000
............................................................................................................................................................ACCTTTTGATTTACTACTTTAC............................................................................................................................................................................22113.0013001300000000
.................................................................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................20110.0010001000000000
............................................................................................................................................................ACCTTTTGATTTACTACTT...............................................................................................................................................................................1915.00500500000000
..............................................................................................................................................................CTTTTGATTTACTACTTTAG............................................................................................................................................................................2014.00400310000000
...............................................................................................................................................................TTTTGATTTACTACTTTAG............................................................................................................................................................................1914.00400400000000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2513.00300030000000
...............................................................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2213.00300210000000
.............................................................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................................................1913.00300200100000
..................................................................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................1913.00300210000000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................2413.00300300000000
.............................................................................................................TAAGTAGTATCCATTAAAGTTG...........................................................................................................................................................................................................................2213.00300300000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTTG........................................................................................................................................................................................................................2513.00300300000000
..................................................................................................................................................................................GAATCTCCAGTCAAAGTCAACA......................................................................................................................................................2212.00200200000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGTT.......................................................................................................................................................................................................................2612.00200200000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTG..........................................................................................................................................................................................................................2312.00200110000000
...............................................................................................................AGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................1812.00200200000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTAA.........................................................................................................................................................................................................................2411.00100010000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTGT.........................................................................................................................................................................................................................2411.00100010000000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGTGGT.....................................................................................................................................................................................................................2811.00100100000000
droEre2
GTCAATCAGTTTGGAGTAGTAAGTGAAATAATTGAGTTCAAAGAA-AA-GTT----GTT------------------------------------GATGGAAGCTTCCTTAAGTAGTATCCATTAAAGGGTTGTGGTCACAAT------TGAATCGACCGTTTAATGTACTACTTTAAGAATCTCCAGTCAAAGTCAACAAT-AA---TT------AGTTCTATATT------------------------------------------------------------------------------------------AA---T--------TGATCAAAATTATATATCTSizeHit CountTotal NormTotalM055

Female-body
M057

Embryo
V060

Head
V040

Embryo
V107

Male-body
V108

Head
GSM1528801

follicle cells
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2419069.0090698974480768620180
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................241393.00393620385000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................231210.0021015260166120
............................................................................................................................................................ACCGTTTAATGTACTACTTTAA............................................................................................................................................................................22198.00981049039000
..............................................................................................................AAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................23185.008581004000
.............................................................................................................TAAGTAGTATCCATTAAAGGGT...........................................................................................................................................................................................................................22150.0050419026100
............................................................................................................TTAAGTAGTATCCATTAAAGGGTT..........................................................................................................................................................................................................................24123.002313019000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGT........................................................................................................................................................................................................................25122.00229508000
...............................................................................................................AGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................22120.002070013000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................................................24118.001821015000
............................................................................................................................................................ACCGTTTAATGTACTACTTTA.............................................................................................................................................................................21116.001631201000
.............................................................................................................TAAGTAGTATCCATTAAAGGG............................................................................................................................................................................................................................21114.00141508000
.............................................................................................................TAAGTAGTATCCATTAAAGG.............................................................................................................................................................................................................................20110.00100703000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTA.........................................................................................................................................................................................................................2419.0090009000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGC........................................................................................................................................................................................................................2519.0090504000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTGA........................................................................................................................................................................................................................2516.0061104000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTCT.........................................................................................................................................................................................................................2413.0030003000
..................................................................................................................AGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................1913.0030003000
............................................................................................................TTAAGTAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2513.0031002000
.............................................................................................................TAAGTAGTATCCATTAAGA..............................................................................................................................................................................................................................1932.3370403000
..............................................................................................................AAGTAGTATCCATTAAAGGGTTT.........................................................................................................................................................................................................................2312.0022000000
............................................................................................................................................................ACCGTTTAATGTACTACTTT..............................................................................................................................................................................2012.0020200000
............................................................................................................................................................ACCGTTTAATGTACTACTTTAAA...........................................................................................................................................................................2312.0020101000
.............................................................................................................................................................CCGTTTAATGTACTACTTTAA............................................................................................................................................................................2112.0020200000
.................................................................................................................TAGTATCCATTAAAGGGTTG.........................................................................................................................................................................................................................2012.0022000000
.............................................................................................................TAAGTAGTATCCATTAAA...............................................................................................................................................................................................................................1812.0020002000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTTTG........................................................................................................................................................................................................................2512.0021100000
.............................................................................................................TAAGTAGTATCCATTAAAGGGTC..........................................................................................................................................................................................................................2312.0020200000
.............................................................................................................TAAGTAGTATCCATTAAAG..............................................................................................................................................................................................................................1912.0021100000
..............................................................................................................AAGTAGTATCCATTAAAGGGTTC.........................................................................................................................................................................................................................2311.0011000000

Generated: 10/20/2015 at 10:19 PM