ID:

dps-mir-6-1

 Coordinate:

3:12677098-12677177 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.8

Flybase annnotation

utr3 [utr3_minus_3615]; pre_miRNA [Dpse\mir-6-1-RM]; miRNA [Dpse\miR-6-1-RA]

No Repeatable elements found

mature

  1. dps-mir-6-3  3:12676810-12676831 -
  2. dps-mir-6-2  3:12676951-12676972 -
  3. dps-mir-6-1  3:12677107-12677128 -
star

Sense Strand Reads

ACAGCCACACATGGGAAACGAAACGCTCAGCGGTGGAGACCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGACTCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAGCCAAGGAATCGCGTTGTGCAGTGCTTCCAGTTACTGACA

*********************************************..(((((((...((((((((((((((((((((.((((((((....)))...))))).))))))))))))))))))))....))))).))..******************************************** 		Read size # Mismatch Hit Count Total Norm Total M059

embryo

 M040

female body

 GSM343916

embryo

 M062

head

 V112

male body		 SRR902012

CNS imaginal disc
...................................................................................................TATCACAGTGGCTGTTCTTTTT........................................................... 22 0 3 38201.33 114604 107701 6815 3 78 7 0
...................................................................................................TATCACAGTGGCTGTTCTTTT............................................................ 21 0 3 6091.00 18273 17000 1237 2 29 5 0
...................................................................................................TATCACAGTGGCTGTTCTTTTC........................................................... 22 1 3 1760.00 5280 5272 4 0 4 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTT........................................................... 22 1 3 1675.33 5026 5020 2 0 4 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 893.00 2679 2672 1 0 6 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 886.00 2658 2653 0 0 5 0 0
............................................................AGAGAATAGTTGCTGTGCTATA.................................................................................................. 22 0 1 867.00 867 123 5 739 0 0 0
............................................................AGAGAATAGTTGCTGTGCTAT................................................................................................... 21 0 1 486.00 486 214 10 262 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTT............................................................. 20 0 3 403.00 1209 1074 134 0 1 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTG.......................................................... 23 0 2 249.00 498 419 79 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTGT......................................................... 24 0 1 242.00 242 219 23 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTT............................................................ 21 1 3 233.33 700 700 0 0 0 0 0
...................................................................................................TTTCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 232.33 697 697 0 0 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTT............................................................ 21 1 3 214.67 644 643 0 0 1 0 0
....................................................................................................ATCACAGTGGCTGTTCTTTTT........................................................... 21 0 3 194.00 582 77 505 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTC............................................................ 21 1 3 169.33 508 506 2 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTC.......................................................... 23 1 3 159.00 477 464 12 0 1 0 0
...................................................................................................TATCACAGCGGCTGTTCTTTTT........................................................... 22 1 3 146.33 439 429 8 0 2 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTT............................................................ 21 1 3 134.00 402 400 0 0 2 0 0
...................................................................................................GATCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 125.67 377 377 0 0 0 0 0
...................................................................................................CATCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 113.67 341 339 2 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTA.......................................................... 23 1 3 100.00 300 277 22 0 0 1 0
...................................................................................................AATCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 80.67 242 241 1 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTC........................................................... 22 2 3 74.33 223 223 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTAC................................................................................................... 21 1 1 70.00 70 70 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTC............................................................. 20 1 3 62.00 186 184 0 0 2 0 0
............................................................ATAGAATAGTTGCTGTGCTAT................................................................................................... 21 1 1 60.00 60 60 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGCTCTTTTT........................................................... 22 1 3 58.33 175 169 3 3 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTTT......................................................... 24 1 2 57.50 115 112 2 0 1 0 0
...................................................................................................TTTCACAGTGGCTGTTCTTTT............................................................ 21 1 3 52.00 156 155 0 0 1 0 0
............................................................AGAGAATAGTTGCTGTGCTATAT................................................................................................. 23 0 1 51.00 51 3 0 48 0 0 0
...................................................................................................TATCTCAGTGGCTGTTCTTTTT........................................................... 22 1 3 50.67 152 151 0 0 1 0 0
...................................................................................................TATCACAGTGGATGTTCTTTTT........................................................... 22 1 3 50.67 152 151 0 0 1 0 0
............................................................ATAGAATAGTTGCTGTGCTATA.................................................................................................. 22 1 1 50.00 50 49 0 1 0 0 0
............................................................AGAGAATAGTTGCTGTGCTA.................................................................................................... 20 0 1 50.00 50 23 1 26 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTTC........................................................... 22 2 3 47.67 143 143 0 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTTC........................................................... 22 2 3 46.67 140 140 0 0 0 0 0
....................................................................................................ATCACAGTGGCTGTTCTTTT............................................................ 20 0 3 40.00 120 14 106 0 0 0 0
...................................................................................................TATCACAGTGGCTGTCCTTTTT........................................................... 22 1 3 40.00 120 113 6 1 0 0 0
...................................................................................................TATCACAGTGGCTTTTCTTTTT........................................................... 22 1 3 39.33 118 115 3 0 0 0 0
..................................................................................................CTATCACAGTGGCTGTTCTTTTT........................................................... 23 1 3 34.00 102 94 8 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCCTTTT........................................................... 22 1 3 33.00 99 90 9 0 0 0 0
...................................................................................................TATCACGGTGGCTGTTCTTTTT........................................................... 22 1 3 30.67 92 86 2 4 0 0 0
..................................................................................................ATATCACAGTGGCTGTTCTTTT............................................................ 22 0 3 30.33 91 84 7 0 0 0 0
...................................................................................................TATCACAGTGGCTGATCTTTTT........................................................... 22 1 3 29.67 89 86 2 1 0 0 0
...................................................................................................TACTACAGTGGCTGTTCTTTTT........................................................... 22 2 3 29.33 88 88 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTT.............................................................. 19 0 3 27.67 83 59 24 0 0 0 0
...................................................................................................TATCACAGTAGCTGTTCTTTTT........................................................... 22 1 3 27.33 82 70 0 12 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTGC......................................................... 24 1 2 26.50 53 53 0 0 0 0 0
...................................................................................................TATCACAGAGGCTGTTCTTTTT........................................................... 22 1 3 26.33 79 74 5 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTTTTTTT........................................................... 22 1 3 26.00 78 77 1 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTCTT........................................................... 22 1 3 25.33 76 73 3 0 0 0 0
...................................................................................................TGTTACAGTGGCTGTTCTTTTT........................................................... 22 2 5 25.20 126 126 0 0 0 0 0
...................................................................................................TATCACAGTTGCTGTTCTTTTT........................................................... 22 1 3 25.00 75 70 3 2 0 0 0
...................................................................................................TATCATAGTGGCTGTTCTTTTT........................................................... 22 1 3 24.67 74 73 1 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTA........................................................... 22 1 3 24.67 74 68 6 0 0 0 0
...................................................................................................TATCACAGTGGCTGTGCTTTTT........................................................... 22 1 3 24.33 73 73 0 0 0 0 0
...................................................................................................TATCACAGTGACTGTTCTTTTT........................................................... 22 1 3 24.33 73 61 0 11 1 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTGT........................................................... 22 1 3 24.00 72 72 0 0 0 0 0
...................................................................................................TATCAGAGTGGCTGTTCTTTTT........................................................... 22 1 3 22.33 67 67 0 0 0 0 0
............................................................ATAGAATAGTTGCTGTGCTAC................................................................................................... 21 2 1 22.00 22 22 0 0 0 0 0
...................................................................................................TATCACAGCGGCTGTTCTTTT............................................................ 21 1 3 21.67 65 63 2 0 0 0 0
...................................................................................................TATCGCAGTGGCTGTTCTTTTT........................................................... 22 1 3 21.33 64 58 5 0 0 1 0
...................................................................................................TATCACAGTGGCCGTTCTTTTT........................................................... 22 1 3 21.33 64 61 3 0 0 0 0
...................................................................................................TATCACAGGGGCTGTTCTTTTT........................................................... 22 1 3 19.67 59 57 2 0 0 0 0
...................................................................................................GATCACAGTGGCTGTTCTTTT............................................................ 21 1 3 19.67 59 59 0 0 0 0 0
.............................................................GAGAATAGTTGCTGTGCTATAT................................................................................................. 22 0 1 18.00 18 1 1 16 0 0 0
...................................................................................................TATCACACTGGCTGTTCTTTTT........................................................... 22 1 3 17.33 52 49 3 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTGTT........................................................... 22 1 3 17.00 51 51 0 0 0 0 0
.....................................................................................................TCACAGTGGCTGTTCTTTTT........................................................... 20 0 3 17.00 51 19 32 0 0 0 0
...................................................................................................TATCACAATGGCTGTTCTTTTT........................................................... 22 1 3 17.00 51 50 1 0 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTT............................................................. 20 1 3 16.67 50 50 0 0 0 0 0
...................................................................................................CATCACAGTGGCTGTTCTTTT............................................................ 21 1 3 16.00 48 47 1 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTGTTTTT........................................................... 22 1 3 15.67 47 46 0 1 0 0 0
...................................................................................................TATCACATTGGCTGTTCTTTTT........................................................... 22 1 3 15.33 46 40 6 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCGTTTT........................................................... 22 1 3 14.33 43 43 0 0 0 0 0
...................................................................................................TATTACAGCGGCTGTTCTTTTT........................................................... 22 2 3 14.33 43 43 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTATT.................................................................................................. 22 1 1 14.00 14 1 0 13 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTT............................................................. 20 1 3 13.67 41 41 0 0 0 0 0
..................................................................................................ATATCACAGTGGCTGTTCTTTTT........................................................... 23 0 3 13.67 41 33 8 0 0 0 0
...................................................................................................TATCACAGTCGCTGTTCTTTTT........................................................... 22 1 3 13.33 40 38 1 1 0 0 0
...................................................................................................TATCACAGTGGCTGGTCTTTTT........................................................... 22 1 3 13.00 39 29 0 10 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTTG.......................................................... 23 1 2 13.00 26 26 0 0 0 0 0
.............................................................GAGAATAGTTGCTGTGCTAT................................................................................................... 20 0 1 13.00 13 5 1 7 0 0 0
...................................................................................................TTTCACAGTGGCTGTTCTTTTC........................................................... 22 2 3 12.67 38 38 0 0 0 0 0
...................................................................................................TATCACAGTGGCTATTCTTTTT........................................................... 22 1 3 12.67 38 35 2 1 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTCTTT........................................................... 22 1 3 12.67 38 37 1 0 0 0 0
.....................................................................................................TCACAGTGGCTGTTCTTTTTGT......................................................... 22 0 1 12.00 12 11 1 0 0 0 0
...................................................................................................TATCACAGTGGCTGCTCTTTT............................................................ 21 1 3 11.33 34 32 0 2 0 0 0
...................................................................................................TTTTACAGTGGCTGTTCTTTTT........................................................... 22 2 3 11.00 33 33 0 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTT............................................................. 20 1 3 10.67 32 32 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTCC......................................................... 24 2 3 10.67 32 26 6 0 0 0 0
...................................................................................................AATCACAGTGGCTGTTCTTTT............................................................ 21 1 3 10.67 32 32 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTG........................................................... 22 1 3 10.33 31 22 9 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTTGT......................................................... 24 1 1 10.00 10 10 0 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTTC.......................................................... 23 2 3 10.00 30 29 0 0 1 0 0
...................................................................................................TATCACAGTGGCTGTACTTTTT........................................................... 22 1 3 9.67 29 29 0 0 0 0 0
...................................................................................................TATCTCAGTGGCTGTTCTTTT............................................................ 21 1 3 9.67 29 28 0 0 1 0 0
............................................................AGAGAATAGTTGCTGTGCTCTA.................................................................................................. 22 1 1 9.00 9 0 0 9 0 0 0
...................................................................................................TATCACAGTGGGTGTTCTTTTT........................................................... 22 1 3 8.67 26 26 0 0 0 0 0
...................................................................................................TATCACAGTGGCAGTTCTTTTT........................................................... 22 1 3 8.67 26 26 0 0 0 0 0
....................................................................................................ATCACAGTGGCTGTTCTTT............................................................. 19 0 3 8.33 25 3 22 0 0 0 0
...................................................................................................TATCACAGTGGATGTTCTTTT............................................................ 21 1 3 8.33 25 25 0 0 0 0 0
...................................................................................................TATCACAGTGGTTGTTCTTTTT........................................................... 22 1 3 8.00 24 24 0 0 0 0 0
.............................................................GAGAATAGTTGCTGTGCTATA.................................................................................................. 21 0 1 8.00 8 2 0 6 0 0 0
...................................................................................................TATTACAGTGGCTGCTCTTTTT........................................................... 22 2 3 8.00 24 24 0 0 0 0 0
...................................................................................................TAACACAGTGGCTGTTCTTTTT........................................................... 22 1 3 8.00 24 24 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTG............................................................ 21 1 3 8.00 24 23 1 0 0 0 0
......................................................................................................CACAGTGGCTGTTCTTTTT........................................................... 19 0 3 7.67 23 13 10 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTATT........................................................... 22 1 3 7.67 23 23 0 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTTTG.......................................................... 23 1 2 7.50 15 15 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCT............................................................... 18 0 3 7.00 21 13 8 0 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTTTG.......................................................... 23 1 2 7.00 14 14 0 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTTTGT......................................................... 24 1 1 7.00 7 7 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTCT................................................................................................... 21 1 1 7.00 7 0 0 7 0 0 0
............................................................AGAGAATAGTTGCTGTGCTATC.................................................................................................. 22 1 1 7.00 7 1 0 6 0 0 0
...................................................................................................GATCACAGTGGCTGTTCTTTTC........................................................... 22 2 3 7.00 21 21 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTGTTT........................................................... 22 1 3 6.67 20 20 0 0 0 0 0
...................................................................................................TATCACAGTGTCTGTTCTTTTT........................................................... 22 1 3 6.67 20 19 0 1 0 0 0
...................................................................................................TATCACAGTGGCTTTTCTTTT............................................................ 21 1 3 6.67 20 19 1 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTCT........................................................... 22 1 3 6.33 19 18 1 0 0 0 0
...................................................................................................TATCACAGTGCCTGTTCTTTTT........................................................... 22 1 3 6.33 19 18 0 1 0 0 0
............................................................AGAGAATAGTTGCTGTTCTATA.................................................................................................. 22 1 1 6.00 6 0 0 6 0 0 0
...................................................................................................TAGCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 6.00 18 18 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGATCTTTT............................................................ 21 1 3 5.67 17 17 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTATTTTT........................................................... 22 1 3 5.67 17 15 2 0 0 0 0
.................................................................................................TCTATCACAGTGGCTGTTCTTTTT........................................................... 24 1 3 5.67 17 17 0 0 0 0 0
...................................................................................................CATCACAGTGGCTGTTCTTTTC........................................................... 22 2 3 5.67 17 16 1 0 0 0 0
..................................................................................................CTATCACAGTGGCTGTTCTTTT............................................................ 22 1 3 5.33 16 14 2 0 0 0 0
...................................................................................................TATCACAGTGGCTCTTCTTTTT........................................................... 22 1 3 5.33 16 13 1 2 0 0 0
..................................................................................................ATATCACAGTGGCTGTTCTTT............................................................. 21 0 3 5.33 16 16 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTCTT............................................................ 21 1 3 5.00 15 15 0 0 0 0 0
............................................................AGAGAATAGTTGCTGGGCTAT................................................................................................... 21 1 1 5.00 5 1 0 4 0 0 0
...................................................................................................TATCACAGTGGCTGTGCTTTT............................................................ 21 1 3 5.00 15 15 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTCCTTTT............................................................ 21 1 3 5.00 15 15 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTTCTAT................................................................................................... 21 1 1 5.00 5 1 0 4 0 0 0
.......................................................................................................ACAGTGGCTGTTCTTTTT........................................................... 18 0 3 5.00 15 12 3 0 0 0 0
...................................................................................................TTTCACAGTGGCTGTTCTTTTTGT......................................................... 24 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTC............................................................ 21 2 3 5.00 15 15 0 0 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTTTGT......................................................... 24 1 1 5.00 5 5 0 0 0 0 0
............................................................AGAGAATAGCTGCTGTGCTATA.................................................................................................. 22 1 1 5.00 5 1 0 4 0 0 0
....................................................................................................AGCACAGTGGCTGTTCTTTTT........................................................... 21 1 3 5.00 15 15 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTGTA.................................................................................................. 22 1 1 5.00 5 2 0 3 0 0 0
............................................................ATAGAATAGTTGCTGTGCTA.................................................................................................... 20 1 1 5.00 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTTTTTT............................................................ 21 1 3 5.00 15 13 1 1 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTC............................................................ 21 2 3 4.67 14 14 0 0 0 0 0
...................................................................................................TATCACAGTTGCTGTTCTTTT............................................................ 21 1 3 4.67 14 12 0 2 0 0 0
...................................................................................................TATCATAGTGGCTGTTCTTTT............................................................ 21 1 3 4.67 14 13 1 0 0 0 0
...................................................................................................TATCAGAGTGGCTGTTCTTTT............................................................ 21 1 3 4.67 14 14 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTGA......................................................... 24 1 2 4.50 9 9 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCCTTT............................................................ 21 1 3 4.33 13 13 0 0 0 0 0
...................................................................................................TATCACAGTAGCTGTTCTTTT............................................................ 21 1 3 4.33 13 10 0 3 0 0 0
...................................................................................................TATCACAGTGGATGTTCTTTTC........................................................... 22 2 3 4.33 13 13 0 0 0 0 0
...................................................................................................TATCACAACGGCTGTTCTTTTT........................................................... 22 2 3 4.33 13 13 0 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTC............................................................ 21 2 3 4.33 13 13 0 0 0 0 0
...................................................................................................TACCACAGCGGCTGTTCTTTTT........................................................... 22 2 3 4.33 13 13 0 0 0 0 0
..................................................................................................CGATCACAGTGGCTGTTCTTTTT........................................................... 23 2 3 4.33 13 13 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTCT............................................................ 21 1 3 4.00 12 11 1 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTTTA.................................................................................................. 22 1 1 4.00 4 0 0 4 0 0 0
............................................................AGAGAATAGTTGCTGTGGTAT................................................................................................... 21 1 1 4.00 4 0 0 4 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTTTC.......................................................... 23 2 3 4.00 12 12 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGATATA.................................................................................................. 22 1 1 4.00 4 0 0 4 0 0 0
..................................................................................................AGATCACAGTGGCTGTTCTTTT............................................................ 22 1 3 4.00 12 12 0 0 0 0 0
..............................................................................................CGATCTATCACAGTGGCTGTTCTTTTT........................................................... 27 2 1 4.00 4 4 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGGTATA.................................................................................................. 22 1 1 4.00 4 0 0 4 0 0 0
...................................................................................................AATCACAGTGGCTGTTCTTTTC........................................................... 22 2 3 4.00 12 12 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTATAAA................................................................................................ 24 2 1 4.00 4 1 0 3 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTAA......................................................... 24 2 3 4.00 12 10 2 0 0 0 0
....................................................................................................ATCACAGTGGCTGTTCTTTTTG.......................................................... 22 0 2 4.00 8 1 7 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTTTC.......................................................... 23 2 3 3.67 11 11 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTATTT........................................................... 22 1 3 3.67 11 11 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCATTTT........................................................... 22 1 3 3.67 11 11 0 0 0 0 0
..................................................................................................AGATCACAGTGGCTGTTCTTTTT........................................................... 23 1 3 3.67 11 11 0 0 0 0 0
...................................................................................................TATCACAGCGGCTGTTCTTTTC........................................................... 22 2 3 3.67 11 11 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTGT............................................................ 21 1 3 3.67 11 11 0 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTTTT......................................................... 24 2 2 3.50 7 7 0 0 0 0 0
...................................................................................................TACTACAGTGGCTGTTCTTTT............................................................ 21 2 3 3.33 10 10 0 0 0 0 0
...................................................................................................TTTCACAGTGGCTGTTCTTT............................................................. 20 1 3 3.33 10 10 0 0 0 0 0
...................................................................................................TATCACAGTGACTGTTCTTTT............................................................ 21 1 3 3.33 10 8 0 2 0 0 0
...................................................................................................TATAACAGTGGCTGTTCTTTTT........................................................... 22 1 3 3.33 10 8 2 0 0 0 0
...................................................................................................TATCACAGTGGCCGTTCTTTT............................................................ 21 1 3 3.33 10 9 1 0 0 0 0
...................................................................................................TATCACAGAGGCTGTTCTTTT............................................................ 21 1 3 3.33 10 10 0 0 0 0 0
..................................................................................................TTATCACAGTGGCTGTTCTTTTT........................................................... 23 1 3 3.33 10 4 6 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTTA.......................................................... 23 2 3 3.00 9 9 0 0 0 0 0
...............................................................................................GATCTATCACAGTGGCTGTTCTTTTT........................................................... 26 2 1 3.00 3 3 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTGTA........................................................ 25 0 1 3.00 3 3 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTGATTTTCT......................................................... 24 3 1 3.00 3 0 0 3 0 0 0
...................................................................................................TATCACAGTGGCTGTCCTTTTC........................................................... 22 2 3 3.00 9 9 0 0 0 0 0
............................................................GGAGAATAGTTGCTGTGCTATA.................................................................................................. 22 1 1 3.00 3 0 0 3 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTCC.......................................................... 23 2 3 3.00 9 8 1 0 0 0 0
...................................................................................................TATCACAGTGGCTGGTGTTTTT........................................................... 22 2 3 3.00 9 0 0 8 0 0 1
............................................................AGAGAATAGTTGCTGTGCTATAAAA............................................................................................... 25 3 1 3.00 3 0 0 3 0 0 0
............................................................AGATAATAGTTGCTGTGCTAT................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.............................................................................................ACGATCTATCACAGTGGCTGTTCTTTTT........................................................... 28 3 1 3.00 3 3 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGGTATTTTT........................................................... 22 2 3 3.00 9 0 0 9 0 0 0
............................................................AGAGAATAGTTGCTGTGC...................................................................................................... 18 0 1 3.00 3 3 0 0 0 0 0
...................................................................................................TGTCACAGTGGCTGTTCTTTTTA.......................................................... 23 2 4 3.00 12 12 0 0 0 0 0
...................................................................................................TATCACAGCGGCTGTTGTTTTTCT......................................................... 24 3 1 3.00 3 0 0 3 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTGTT............................................................ 21 1 3 3.00 9 9 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTGTG.................................................................................................. 22 2 1 3.00 3 0 0 3 0 0 0
............................................................AAAGAATAGTTGCTGTGCTATA.................................................................................................. 22 1 1 3.00 3 0 0 3 0 0 0
...................................................................................................TATCACAGTGGCTGTTTTTT............................................................. 20 1 3 3.00 9 9 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGGTGTTTTTTT......................................................... 24 3 2 3.00 6 0 0 6 0 0 0
................................................................................................AGCTATCACAGTGGCTGTTCTTTTT........................................................... 25 2 1 3.00 3 3 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTATAA................................................................................................. 23 1 1 3.00 3 2 0 1 0 0 0
............................................................AGAGAATAGTTGCTGTGGTTTA.................................................................................................. 22 2 1 3.00 3 0 0 3 0 0 0
............................................................AGCGAATAGTTGCTGTGCTAT................................................................................................... 21 1 1 3.00 3 1 0 2 0 0 0
....................................................................................................ATCACAGTGGCTGTTCTTTTTGT......................................................... 23 0 1 3.00 3 1 2 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTTT................................................................................................... 21 1 1 3.00 3 0 0 3 0 0 0
...................................................................................................TGTTACAGTGGCTGTTCTTTT............................................................ 21 2 6 2.83 17 17 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGATCTTTTC........................................................... 22 2 3 2.67 8 8 0 0 0 0 0
...................................................................................................TGCCACAGTGGCTGTTCTTTTT........................................................... 22 2 3 2.67 8 8 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGGTCTTTT............................................................ 21 1 3 2.67 8 5 0 3 0 0 0
...................................................................................................TATCACAGTGGCGGTTCTTTTT........................................................... 22 1 3 2.67 8 8 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGCTCTTTTC........................................................... 22 2 3 2.67 8 8 0 0 0 0 0
...................................................................................................TATTACGGTGGCTGTTCTTTTT........................................................... 22 2 3 2.67 8 8 0 0 0 0 0
...................................................................................................TATCACGGTGGCTGTTCTTTT............................................................ 21 1 3 2.67 8 7 0 1 0 0 0
...................................................................................................TATTTCAGTGGCTGTTCTTTTT........................................................... 22 2 4 2.50 10 10 0 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTTTTT......................................................... 24 2 2 2.50 5 5 0 0 0 0 0
...................................................................................................TTTTACAGTGGCTGTTCTTTT............................................................ 21 2 3 2.33 7 7 0 0 0 0 0
...................................................................................................TATCGCAGTGGCTGTTCTTTT............................................................ 21 1 3 2.33 7 6 1 0 0 0 0
...................................................................................................TATGACAGTGGCTGTTCTTTTT........................................................... 22 1 3 2.33 7 7 0 0 0 0 0
...................................................................................................TATCACAGTGGCCGTTCTTTTC........................................................... 22 2 3 2.33 7 7 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTAA.......................................................... 23 2 3 2.00 6 3 2 0 0 1 0
............................................................AGAGAATAGTTGCTGTGCTATAC................................................................................................. 23 1 1 2.00 2 1 0 1 0 0 0
............................................................AGAGAATAGTTGCTGTGCTGT................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0
............................................................ACAGAATAGTTGCTGTGCTAT................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................AGCGAATAGTTGATGTGCTATA.................................................................................................. 22 2 1 2.00 2 0 0 2 0 0 0
.....................................................................................................TGACAGTGGCTGTTCTTTTTGT......................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................AGAGAATAGTTGATGTGCTA.................................................................................................... 20 1 1 2.00 2 1 0 1 0 0 0
............................................................AGAGGATAGTTGCTGTGCTATA.................................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0
............................................................ATAGAATCGTTGCTGTGCTAT................................................................................................... 21 2 1 2.00 2 2 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCTATG.................................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0
............................................................AGAGAATAGTTGCTGTGCTGTT.................................................................................................. 22 2 1 2.00 2 0 0 2 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTCT......................................................... 24 1 1 2.00 2 1 0 0 0 1 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTGAA........................................................ 25 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTCCCC....................................................... 26 3 1 2.00 2 2 0 0 0 0 0
...................................................................................................TATCACAGTGGTTGTTCTTTT............................................................ 21 1 3 2.00 6 6 0 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTTTTTGC......................................................... 24 2 2 2.00 4 4 0 0 0 0 0
............................................................AGAGAATAGGTGCTGTGCTGTA.................................................................................................. 22 2 1 2.00 2 0 0 2 0 0 0
...................................................................................................TATCACACTGGCTGTTCTTTT............................................................ 21 1 3 2.00 6 5 1 0 0 0 0
............................................................AGAGAATAGTTGCTGTACTAT................................................................................................... 21 1 1 2.00 2 1 0 1 0 0 0
............................................................AGAGAATAGTTGCTGTGTTATA.................................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTTTTA.......................................................... 23 2 3 2.00 6 6 0 0 0 0 0
...................................................................................................TATCACTGTGGCTGTTCTTTTT........................................................... 22 1 3 2.00 6 5 1 0 0 0 0
...................................................................................................TGTCACAGCGGCTGTTCTTTTT........................................................... 22 2 3 2.00 6 6 0 0 0 0 0
............................................................AGAGAATAGGTGCTGTGCTATA.................................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0
................................................................................................ATCTATCACAGTGGCTGTTCTTTTT........................................................... 25 1 1 2.00 2 2 0 0 0 0 0
....................................................................................................ATCACAGTGGCTGTTCTTTTC........................................................... 21 1 3 2.00 6 5 1 0 0 0 0
...................................................................................................TCTCACAGTGGCTGTTCTTTTT........................................................... 22 1 3 2.00 6 6 0 0 0 0 0
............................................................AGAGGATAGTTGCTGTGCTAT................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0
............................................................ATAGAATAGTTGCTGTGCTGTA.................................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0
............................................................AGAGAATAGGTGCTGTGCTAT................................................................................................... 21 1 1 2.00 2 1 0 1 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTGGACC...................................................... 27 1 1 2.00 2 2 0 0 0 0 0
............................................................AGAGAATAGTTGCTGTGCT..................................................................................................... 19 0 1 2.00 2 1 0 1 0 0 0
............................................................AGAGAATAGTTGCTGGGCTATA.................................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0
............................................................AGAGAATAGTTGCTGTGCGAT................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0
...................................................................................................TATTACAGTGGCTGCTCTTTT............................................................ 21 2 3 2.00 6 6 0 0 0 0 0
...................................................................................................TATCTCAGTGGCTGTTCTTTTC........................................................... 22 2 3 2.00 6 6 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTGTC........................................................ 25 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGGTGTTTTTCT......................................................... 24 3 1 2.00 2 0 0 2 0 0 0
............................................................AGAGAATACTTGCTGTGCTAT................................................................................................... 21 1 1 2.00 2 1 0 1 0 0 0
...................................................................................................TATCACAGTAGCTGTTCTTTTC........................................................... 22 2 3 2.00 6 6 0 0 0 0 0
...........................................................CAGAGAATAGTTGCTGTGCTATA.................................................................................................. 23 1 1 2.00 2 1 0 1 0 0 0
...................................................................................................TATCACAGTGGCTGTTGTTTTTCT......................................................... 24 2 1 2.00 2 0 0 2 0 0 0
...................................................................................................TATTACAGTGGCTGTTCTCTTT........................................................... 22 2 3 2.00 6 6 0 0 0 0 0
............................................................AGAGAATAGTTGCTATGCTATA.................................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0
............................................................ATAGAATAGTTGCTGTGCC..................................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0
...................................................................................................TATTACAGTGGCTGTCCTTTTT........................................................... 22 2 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACCGTGGCTGTTCTTTTT........................................................... 22 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TACCACAGTAGCTGTTCTTTTT........................................................... 22 2 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGCAGTTCTTTT............................................................ 21 1 3 1.67 5 4 1 0 0 0 0
...................................................................................................TATTACAGTGACTGTTCTTTTT........................................................... 22 2 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACACTGGCTGTTCTTTTC........................................................... 22 2 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTC.............................................................. 19 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGCTCTTCTTTT............................................................ 21 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTGTTTT............................................................ 21 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATTACAGTGGCTGTTTTTTTT........................................................... 22 2 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCCCAGTGGCTGTTCTTTTT........................................................... 22 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TACTACAGTGGCTGTTCTTTTC........................................................... 22 3 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGCTATTCTTTT............................................................ 21 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACATTGGCTGTTCTTTT............................................................ 21 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................GATCACAGTGGCTGTTCTTT............................................................. 20 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGGTGTTCTTTT............................................................ 21 1 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAATGGCTGTTCTTTT............................................................ 21 1 3 1.67 5 4 0 0 1 0 0
...................................................................................................TATCACAGTGGCTGTTCGTTGT........................................................... 22 2 3 1.67 5 5 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGGTGTTTT............................................................ 21 2 3 1.67 5 0 0 5 0 0 0
...................................................................................................TATCACAGGGGCTGTTCTTTT............................................................ 21 1 3 1.67 5 5 0 0 0 0 0
....................................................................................................ATCACAGTGGCTGTTCTT.............................................................. 18 0 3 1.67 5 0 5 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTTTC........................................................ 25 2 2 1.50 3 3 0 0 0 0 0
.....................................................................................................TCACAGTGGCTGTTCTTTTTG.......................................................... 21 0 2 1.50 3 2 1 0 0 0 0
...................................................................................................TATCACAGTGGCTGGTCTTTTTTT......................................................... 24 2 2 1.50 3 1 0 2 0 0 0
...................................................................................................TATCACAGTGGCTTCTTTTT............................................................. 20 3 20 1.45 29 29 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTTTTTTC........................................................... 22 2 3 1.33 4 4 0 0 0 0 0
....................................................................................................ATCACAGTGGCTGTTCTTTTTC.......................................................... 22 1 3 1.33 4 1 3 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCGTTTC........................................................... 22 2 3 1.33 4 4 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTCC........................................................... 22 2 3 1.33 4 4 0 0 0 0 0
..................................................................................................CTATCACAGTGGCTGTTCTTTTC........................................................... 23 2 3 1.33 4 4 0 0 0 0 0
...................................................................................................TATCACAGTGGCTGTTCTTTTTCCC........................................................ 25 3 3 1.33 4 4 0 0 0 0 0
...................................................................................................TACCACAGCGGCTGTTCTTTT............................................................ 21 2 3 1.33 4 4 0 0 0 0 0
...................................................................................................TACCACAGTGGCTGTTCTTC............................................................. 20 2 3 1.33 4 4 0 0 0 0 0

Anti-sense strand reads

TGTCGGTGTGTACCCTTTGCTTTGCGAGTCGCCACCTCTGGTGTGGTCGGAAACTTCATCTCTCTTATCAACGACACGATATACAGGAAGCTGAGATATATAGTGTCACCGACAAGAAAAACATGGATTTCACGGTTTGTCGGTTCCTTAGCGCAACACGTCACGAAGGTCAATGACTGT

********************************************..(((((((...((((((((((((((((((((.((((((((....)))...))))).))))))))))))))))))))....))))).))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM343916

embryo

 M040

female body

 M059

embryo
.................................................................................................ATATAGTGTCGTCGACAAGAGA............................................................. 22 3 4 0.25 1 1 0 0
..................GCGTTGCGAGTCGCCAGCTA.............................................................................................................................................. 20 3 9 0.11 1 0 1 0
......................................................................................................GTTTCACCGACAACAAAAA........................................................... 19 2 14 0.07 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 3:12677048-12677227 - dps-mir-6-1 Known_mirbase ACA-GCCACACAT-GGGAAACGAAA------CGCTCAGCGGTGG---------A--GA------------------------------------------------CCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC---TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAA-G-------GAA------------------------------TCGCGTTGT-----GCAGTGCT-T----CC-AGT-T----------ACTGACA
droPer2 scaffold_2:8906445-8906624 + dpe-mir-6-1 Known_mirbase ACA-GCCACACAT-GGGAAACGAAA------CACTCAGCGATGG---------A--GA------------------------------------------------CCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC---TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAA-G-------GAA------------------------------TCGCGTTGT-----GCAGTGCT-T----CC-AGT-T----------ACTCACA
droWil2 scf2_1100000004514:1651282-1651449 - dwi-mir-6-1 Known_mirbase ATA-TC--AACAATATCCAGCAAAG------TTTT----------C--------------------------------AA---GTG--------------GT--TTTC-AACCAGCCTTTAAAGTAGAGAGAATAGTTGCTGTGTTTTATGCCCTTTT-C--AATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGC--CCCACAACAAC-AACA-------ACAA--------------------------------CA------------CA-T----TC-AAAAT----------ATTAACA
droVir3 scaffold_12875:4112578-4112763 + dvi-mir-6-1 Known_mirbase ATG-TCTATATA---GACTTAAA-ACTATATCGC-----------CC-AGTTA-T----------------------------------------------C--T-GT-TTATAGCCTTTAAAGTAGAGAGAATAGACGCTGTGCTGTATGTTTTGCG-T-ATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGC--CGTACAACGTT-G----------ATTT-CTTAAATTG------------TGAAAATTGA-AT-----A-AA------------TATT-T----------GCTGACA
droMoj3 scaffold_6496:20936239-20936451 - dmo-mir-6-1 Known_mirbase AGA-CTACAATAT---GAATGTGAA------TATTTATAAGTGT---------A--TA------TATATTTATTTCTCTA---GTG--------------T------T-TTTTCGCCTTTAAAGTAGAGAGAATAGATGCTGTG-----AGTATATCTGT-TGCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGC--CAGACAGCATT-A----------TTTTTCGCCAATTGCCAAATATAAAGTGAAACATGA-GC-----ACAG------------TATT-C----------GCAGACA
droGri2 scaffold_5621:3389-3515 + dgr-mir-6-4 Known_mirbase A-----------------------------------------------------------------------------------------------------------------GCCTTTAATGTAAAGAGAATAGATGCTGTGCTGTATGTTGAACG-T-ATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGC--CGTACAACAAA-ATGA-------GTAA--------------------------------TG------------TT-A----TC-AACCG----------CTGCATA
droAna3 scaffold_13266:9731764-9731946 + dan-mir-6-1 Known_mirbase AAA-ATGCATCAA-AAA---TAA-------------------------------C------------------GAGTTAG---GTGAC----AGGACTCGCA--G-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTAAGTTTCA------AAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAA-ACC--CGAGAA------------------------------T---GTTCTGTGAT-------T-T--------TT-CGT---TATCCGACGACA
droBip1 scf7180000396427:874716-874892 + AAA-ATTCATCAG-AGA---T------------------------CG-AGTTA-G-----------------------------TGACTTGAAGGAGTCGCA--G-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTATGTTACCA-------TTCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAGACC--CAAGAA------------------------------T-----TG--TGAT-------T---------TTT-CGC---CA---TCCGACA
droKik1 scf7180000302679:88909-89085 - AAG-ATTCAACGATTG-------------------------------------AT------------------CAGTTCTAAGGTTCT----ATGAGC--AAGGA-TC-ACACAGCCTTTAAAGTAGAGAGAATAGCTGCTGCGCTGTATGTTTGC-------CATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--GAAACACCAAG-GCT--C----ATTT---------------------------------GG---G-T-------T-TATATT---TT-CTT---AG---TGTGACA
droFic1 scf7180000454039:847604-847792 - AAA-GCTCATCAA-AGGAAAAAACA------TAC----------TTAAAGTTA-C------------------AATTTTA---GTG--------------AT--G-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTATTTATCAAAAATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAT-G----------TTTT--------------------------------TG-----T-------T-TTTC---TTTT-CGTTCGTA---TCTGACA
droEle1 scf7180000491201:2013542-2013724 - AAA-ACTCATCGATGGGAAATACAA------T------------CCAAAA----A------------------CAGTTCT---GTG--------------CC--G-AA-TCTCAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTAACTAAAC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAA-GCGGCC---AATATT--------------------------------TG-----T-------T-TTCA----TTT-T----------CCCGACA
droRho1 scf7180000780066:74031-74207 + AAT-ACTCATCGA-GGGAAATAAGA------T------------TCGAAATTA-T------------------CAGTTCT---GTG--------------CC--A-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTA-AC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAA-G----------CTCT--------------------------------AG-----T-------T-TTAT----TTT-T----------CCTGACA
droBia1 scf7180000302143:3059380-3059552 - AAA-GCTCATCAA-GGGAAATACCA------T------------CCGAAATTA-C------------------CTGTCCA---ATG--------------CT--G-AA-ACACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACCAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTGACATCAGA-C----------GTTT--------------------------------AG-----T-----------------TCT-C----------CCTGACA
droTak1 scf7180000415384:84427-84587 + CCAAAAACATCAA-GGGATATACTA------T---TAA------CCA-AG---------------------------------------------------T--A-AA-ACATAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACACCAGT-C----------G------------------------------------------T-------T-TTAG----TTT-A----------TCTGACA
droEug1 scf7180000409474:2397212-2397384 + ACT-ATTCATCAA-GGTTATTAA-ACTA--ATAC-------------------------------------------TCA---GTG--------------CC--A-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGTTGTATGCTACTTAAC-AATATCTATATCACAGTGGCTGTTCTTTTTGCATCTAAAGTGA--CTAACATCATT-C----------GTTT--------------------------------TG-----TTTTTTGTT-T----TA---T-A----------TTTGACA
dm3 chr2R:15548465-15548649 - dme-mir-6-1 Known_mirbase ACA-ACTCATCAA-GGAAAATGAAA------G------------TCAAAGTTG-GCAGCTTACTTAA------------------A--------------CT--T-AA-TCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATT-A----------TTTA-AT------------------------------------T-------T-TTTTTTTTTTT-G----------GCACACG
droSim2 2r:16195737-16195921 - dsi-mir-6-1 Known_mirbase ACA-ATTCATCAA-GGAAAATGAAA------G------------CCA-AGTTG-GCAGCTTACT-AA------------------A--------------CT--T-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTTATATAC-CGTATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATT-A----------TTTA-AT----T------------------------TA------------CTTTTTT---TTTT-C----------GCACACG
droSec2 scaffold_1:13063198-13063378 - dse-mir-6-1 Known_mirbase ACA-ATTCATCAA-GGAAAATTA-A------G------------CCA-AGTTG-GCAGCTTACT-AA------------------A--------------CT--T-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATT-A----------TTTA-AT----T------------------------TA------------CT-T----T-TTTT-T----------GCACACG
droYak3 2R:13624142-13624324 + dya-mir-6-1 Known_mirbase ACA-ACTCATCAA-GGGAAATGAAA------G------------CCAAAGTCG-GCATCTCACT-AA------------------G--------------TT--T-AA-TCACAGCCTTTAACGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATAACA-AATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATT-A----------AT-A-AT----T------------------------TG-----T----TGCT-T------TTTT-T----------GCTCACA
droEre2 scaffold_4845:9748718-9748900 - der-mir-6-1 Known_mirbase AAA-ACTCATCAATGGGAAATGAAA------G------------CCAAAGTTG-CCAGCTTACT-TA------------------G--------------CT--A-AA-TCGCAGCCTTTAAAGTAGAGGGAATAGTTGCCGTGCTGTAAGTTAATATAT-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATC-A----------TTT---------------------------------TG-----T----TGCC-T----TATTTT-G----------GTGCACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACA-GCCACACAT-GGGAAACGAAA------CGCTCAGCGGTGG---------A--GA------------------------------------------------CCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC---TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAA-G-------GAA------------------------------TCGCGTTGT-----GCAGTGCT-T----CC-AGT-T----------ACTGACASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22338201.331146040681510770178307000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2136091.0018273012371700029205000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................2231760.0052800452724000000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATA...................................................................................................................................................................221867.0086705123073900000
...............................................................................................................................AGAGAATAGTTGCTGTGCTAT....................................................................................................................................................................211486.00486010214026200000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................203403.001209013410741000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................232249.004980794190000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................241242.002420232190000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................213194.005820505770000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................213169.33508025060000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................233159.004770124641000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................233100.003000222770001000
...............................................................................................................................AGAGAATAGTTGCTGTGCTAC....................................................................................................................................................................21170.007000700000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................20362.00186001842000000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATAT..................................................................................................................................................................23151.005100304800000
...............................................................................................................................AGAGAATAGTTGCTGTGCTA.....................................................................................................................................................................20150.0050012302600000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................20340.001200106140000000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..........................................................................................................................22330.339107840000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................19327.6783024590000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC.......................................................................................................................24226.505300530000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................22324.677406680000000
................................................................................................................................GAGAATAGTTGCTGTGCTATAT..................................................................................................................................................................22118.001801101600000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................20317.0051032190000000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATT...................................................................................................................................................................22114.001400101300000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.........................................................................................................................23313.674108330000000
................................................................................................................................GAGAATAGTTGCTGTGCTAT....................................................................................................................................................................20113.00130150700000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGT.......................................................................................................................22112.001201110000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.......................................................................................................................24310.673206260000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................22310.333109220000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTT...........................................................................................................................1938.332502230000000
................................................................................................................................GAGAATAGTTGCTGTGCTATA...................................................................................................................................................................2118.0080020600000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................2138.002401230000000
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................1937.6723010130000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................1837.002108130000000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATC...................................................................................................................................................................2217.0070010600000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...........................................................................................................................2135.331600160000000
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................1835.001503120000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA.......................................................................................................................2424.5090090000000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATAAA.................................................................................................................................................................2414.0040010300000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................2434.001202100000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................2224.0080710000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA......................................................................................................................2513.0030030000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC........................................................................................................................2333.0090180000000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATAAAA................................................................................................................................................................2513.0030000300000
...............................................................................................................................AGAGAATAGTTGCTGTGC.......................................................................................................................................................................1813.0030030000000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATAA..................................................................................................................................................................2313.0030020100000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2313.0030210000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA........................................................................................................................2332.0060230001000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATAC..................................................................................................................................................................2312.0020010100000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATG...................................................................................................................................................................2212.0020010100000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.........................................................................................................................2132.0060150000000
...............................................................................................................................AGAGAATAGTTGCTGTGCT......................................................................................................................................................................1912.0020010100000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTC......................................................................................................................2512.0020020000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTC............................................................................................................................1931.6750050000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTT............................................................................................................................1831.6750500000000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG........................................................................................................................2121.5030120000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC........................................................................................................................2231.3340310000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.........................................................................................................................2231.3340040000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC......................................................................................................................2531.3340040000000
droPer2
ACA-GCCACACAT-GGGAAACGAAA------CACTCAGCGATGG---------A--GA------------------------------------------------CCACACCAGCCTTTGAAGTAGAGAGAATAGTTGCTGTGCTATATGTCCTTCGAC---TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACAGCCAA-G-------GAA------------------------------TCGCGTTGT-----GCAGTGCT-T----CC-AGT-T----------ACTCACASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................223146.00438941300115
...............................................................................................................................AGAGAATAGTTGCTGTGCTATA...................................................................................................................................................................221106.0010610105000
...............................................................................................................................AGAGAATAGTTGCTGTGCTAT....................................................................................................................................................................21153.00533045032
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................21325.00758620005
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21314.67440440000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATAT..................................................................................................................................................................23114.00140014000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................2325.0010070003
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................2035.0015680001
...............................................................................................................................AGAGAATAGTTGCTGTGCTA.....................................................................................................................................................................2015.005203000
................................................................................................................................GAGAATAGTTGCTGTGCTAT....................................................................................................................................................................2013.003003000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................2033.009090000
................................................................................................................................GAGAATAGTTGCTGTGCTATAT..................................................................................................................................................................2212.002002000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2412.002020000
...............................................................................................................................AGAGAATAGTTGCTGTGCTAG....................................................................................................................................................................2111.001100000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................1931.003030000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATT...................................................................................................................................................................2211.001001000
...............................................................................................................................AGAGAATAGTTGCTGTGCTT.....................................................................................................................................................................2011.001001000
...............................................................................................................................AGAGAATAGTTGCTGTGCTATATC.................................................................................................................................................................2411.001001000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................2221.002020000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................2030.672020000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGA.......................................................................................................................2220.501010000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTT..........................................................................................................................1930.331010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................2230.331010000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..........................................................................................................................2230.331010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................2230.331010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................2330.331010000
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................1930.331010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................2030.331100000
droWil2
ATA-TC--AACAATATCCAGCAAAG------TTTT----------C--------------------------------AA---GTG--------------GT--TTTC-AACCAGCCTTTAAAGTAGAGAGAATAGTTGCTGTGTTTTATGCCCTTTT-C--AATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGC--CCCACAACAAC-AACA-------ACAA--------------------------------CA------------CA-T----TC-AAAAT----------ATTAACASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22335155.671054670180701036555
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2138217.002465103441243042
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................2031168.673506059534411
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................2331099.333298010032880
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTATG.................................................................................................................................................................241379.003790003790
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................193320.009600609504
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................243217.006510506460
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................223189.675690405650
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................183128.333850303820
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................23283.501670601610
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21370.3321101430680
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA......................................................................................................................25346.001380001380
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................18345.001350101340
...............................................................................................................................AGAGAATAGTTGCTGTGTTTT....................................................................................................................................................................21145.0045000450
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA........................................................................................................................23341.671250001250
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................22340.331210101200
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................23332.3397000970
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTATGA................................................................................................................................................................25121.0021000210
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................22318.6756000560
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................20316.00480310170
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTAT..................................................................................................................................................................23116.0016000160
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................24112.001205070
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTA...................................................................................................................................................................22111.0011000110
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................20310.33310120190
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..........................................................................................................................2139.3328010270
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..........................................................................................................................2238.6726000260
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA.......................................................................................................................2437.3322000220
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTATGAA...............................................................................................................................................................2617.00700070
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................1936.0018000180
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...........................................................................................................................2134.6714000140
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................2134.3313000130
...............................................................................................................................AGAGAATAGTTGCTGTGTTT.....................................................................................................................................................................2014.00400040
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTATA.................................................................................................................................................................2414.00400040
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.......................................................................................................................2433.6711000110
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA.......................................................................................................................2423.50700070
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA.........................................................................................................................2243.2513000130
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTT...........................................................................................................................1932.67807010
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTTA........................................................................................................................1932.67800080
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................2222.50500050
...................................................................................................................................AATAGTTGCTGTGTTTTATG.................................................................................................................................................................2012.00200020
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTT..........................................................................................................................1932.00600060
................................................................................................................................GAGAATAGTTGCTGTGTTTTATG.................................................................................................................................................................2312.00200020
............................................................................................................................................................................CACAGTGGCTGTTCTTTT..........................................................................................................................1831.67500050
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.........................................................................................................................2331.33402020
........................................................................................................................................................................ATATCACAGTGGCTGTTCTT............................................................................................................................2031.33400040
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA.......................................................................................................................2231.33400040
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC.......................................................................................................................2431.00301020
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG........................................................................................................................2121.00200020
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTATT.................................................................................................................................................................2411.00100010
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTATGC................................................................................................................................................................2511.00100010
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2311.00100010
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2211.00101000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................2131.00300030
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGTG......................................................................................................................2311.00100010
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC......................................................................................................................2531.00300030
...............................................................................................................................AGAGAATAGTTGCTGTGTTTTATGAAA..............................................................................................................................................................2711.00100010
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA........................................................................................................................2330.67200020
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTA.........................................................................................................................1830.67200020
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC........................................................................................................................2330.67200020
droVir3
ATG-TCTATATA---GACTTAAA-ACTATATCGC-----------CC-AGTTA-T----------------------------------------------C--T-GT-TTATAGCCTTTAAAGTAGAGAGAATAGACGCTGTGCTGTATGTTTTGCG-T-ATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGC--CGTACAACGTT-G----------ATTT-CTTAAATTG------------TGAAAATTGA-AT-----A-AA------------TATT-T----------GCTGACASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
...............................................................................................................................AGAGAATAGACGCTGTGCTGTA...................................................................................................................................................................2218730.0087300002390000000012870000000000000000004802583138354004942413529262011996745853003640000020722718592322141305346346276295
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
...............................................................................................................................AGAGAATAGACGCTGTGCTGT....................................................................................................................................................................2111208.001208000560000000023300000000000000000020141019001155243200252026332231221716141002612000001110580100004759603238
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................241806.00806000850000000000000000000000000000000000001034342305626522151201212800033000000149761000017249431927
...............................................................................................................................AGAGAATAGACGCTGTGCTG.....................................................................................................................................................................201697.0069700070000000000000000000000000000001228001120200146241710217810123000710000046540000003534252218
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.......................................................................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................232359.007180001670000000000000000000000000000000000000011511152472715352218151200039000000151398200000664232819
............................................................................................................................TAGAGAGAATAGACGCTGTGCT......................................................................................................................................................................221292.0029200060000000000000000000000000000000402000053125191613259155111050006200000131300000011242623
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTC......................................................................................................................251178.0017800013000000000000000000000000000000000000000165162381710187578010900000031200000015300
...............................................................................................................................AGAGAATAGACGCTGTGCTGTAA..................................................................................................................................................................231176.00176000200000000100000000000000000001012418001092522141411200000021000001126000000222966
...............................................................................................................................AGAGAATAGACGCTGTGC.......................................................................................................................................................................181150.001500003000000000000000000000000000000000000001946474102050000000000000002800000072103
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC......................................................................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
...............................................................................................................................AGAGAATAGACGCTGTGCTGTAAA.................................................................................................................................................................24178.00780000000000000000000000000000000000012100001124612000000000001000000011200000062521
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGT.......................................................................................................................22133.00330004000000000000000000000000000000000000000010231103110000300000022300000020400
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC........................................................................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
...............................................................................................................................AGAGAATAGACGCTGTGCTGTC...................................................................................................................................................................22125.0025000000000000000000000000000000000000000000002000000000000000000001011000000110000
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
.................................................................................................................................AGAATAGACGCTGTGCTGTATG.................................................................................................................................................................22120.00200000000000000000000000000000000000010000000510001200002000000000000300000030101
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
...............................................................................................................................AGAGAATAGACGCTGTGCTGC....................................................................................................................................................................21116.001600011000000000000000000000000000000000000000310010000000000000000000000000000000
................................................................................................................................GAGAATAGACGCTGTGCTGTA...................................................................................................................................................................21114.00140000000000000000000000000000000000000000000450000000000000000000000100000010012
...............................................................................................................................AGAGAATAGACGCTGTGCTGTAT..................................................................................................................................................................23114.00140001000000000000000000000000000000010200000100000101101000110000000000000011100
...............................................................................................................................AGAGAATAGACGCTGTGCT......................................................................................................................................................................19113.00130001000000000000000000000000000000000100000101010010000000010000000300000011001
...............................................................................................................................AGAGAATAGACGCTGTGCTGTAAAA................................................................................................................................................................25113.00130001000000000000000000000000000000000000002200000000000000000000010100000020013
............................................................................................................................TAGAGAGAATAGACGCTGTGC.......................................................................................................................................................................21112.00120001000000000000000000000000000000000000000011010010000000100000000300000002010
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
.............................................................................................................................AGAGAGAATAGACGCTGTGCTG.....................................................................................................................................................................22111.00110000000000000000000000000000000000000000002310012100000000000000000100000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC.......................................................................................................................2429.501900018000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................AGAGAATAGACGCTGTGCTGTT...................................................................................................................................................................2219.0090001000000000000000000000000000000000000000100001012000000200000000000000000100
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA.......................................................................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
...............................................................................................................................AGAGAATAGACGCTGTGCTGTAG..................................................................................................................................................................2318.0080000000000000000000000000000000000000000000010200000000000100000000300000000001
............................................................................................................................................................................CACAGTGGCTGTTCTTTTTGTACC....................................................................................................................2418.0080000000000000000000000000000000000000000001101000000000000000000000300000000002
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGTC......................................................................................................................2318.0080000000000000000000000000000000000000000000002011010100000200000000000000000000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.........................................................................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
............................................................................................................................TAGAGAGAATAGACGCTGTGCTC.....................................................................................................................................................................2317.0070000000000000000000000000000000000000000000112011100000000000000000000000000000
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA.......................................................................................................................2426.50130002000000000000000000000000000000000000000000001000000000000000002400000003010
................................................................................................................................GAGAATAGACGCTGTGCTGT....................................................................................................................................................................2016.0060000000000000000000000000000000000000000000200010000000000300000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTCA.....................................................................................................................2616.0060000000000000000000000000000000000000000000101002200000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC.......................................................................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
.........................................................................................................................................................................TATCACAGTGGCTGTTC..............................................................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................2225.50110006000000000000000000000000000000000000000000010000000000000000000300000010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA........................................................................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
.......................................................................................................................................................................TATATCACAGTGGCTGTTCTTT...........................................................................................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2315.0050001000000000000000000000000000000000000000000000001000000000000000100000010001
...............................................................................................................................AGAGAATAGACGCTGTGCTGG....................................................................................................................................................................2115.0050000000000000000000000000000000000000000000020000020000000000000000100000000000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTT......................................................................................................................2524.5090001000000000000000000000000000000000000000102002100100000100000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA.......................................................................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
..................................................................................................................................GAATAGACGCTGTGCTGTA...................................................................................................................................................................1914.0040000000000000000000000000000000000000000000100000000000000000000010100000010000
.....................................................................................................................................................TGTTTTGCG-T-ATGGTCTA...............................................................................................................................................1814.0040000000000000200000000000000000000000000000000000000000000000000000100000010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTCT.....................................................................................................................2624.0080000000000000000000000000000000000000000000002001101101000100000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC.......................................................................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
.............................................................................................................................AGAGAGAATAGACGCTGTGCT......................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000100000000000100000000000000000100
............................................................................................................................TAGAGAGAATAGACGCTGTGCG......................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000001010000000000000000000001000
...............................................................................................................................AGAGAATAGACGCTGTGCTGTATG.................................................................................................................................................................2413.0030000000000000000000000000000000000000000000010000000000000000000000100000000100
.................................................................................................................................AGAATAGACGCTGTGCTGTA...................................................................................................................................................................2013.0030000000000000000000000000000000000010100000000000000000000010000000000000000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC........................................................................................................................2233.0090008000000000000000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................AGAGAATAGACGCTGTGCTGTG...................................................................................................................................................................2212.0020000000000000000000000000000000000000000000010000000000000000000000000000001000
droMoj3
AGA-CTACAATAT---GAATGTGAA------TATTTATAAGTGT---------A--TA------TATATTTATTTCTCTA---GTG--------------T------T-TTTTCGCCTTTAAAGTAGAGAGAATAGATGCTGTG-----AGTATATCTGT-TGCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGC--CAGACAGCATT-A----------TTTTTCGCCAATTGCCAAATATAAAGTGAAACATGA-GC-----ACAG------------TATT-C----------GCAGACASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................223175659.67526979301005269462
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................21371420.67214262141002142425
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................2339565.33286966000286900
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................2035461.67163853000163802
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................2234979.00149371000149360
...............................................................................................................................AGAGAATAGATGCTGTG-----AGTAT..............................................................................................................................................................2211583.00158313550012261
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................2131153.673461000034610
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.......................................................................................................................243749.332248000022480
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................232623.501247100012442
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................203612.001836000018360
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................213393.671181200011790
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................193276.6783001008281
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................233230.3369100006910
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................241191.0019100001910
...............................................................................................................................AGAGAATAGATGCTGTG-----AGTATA.............................................................................................................................................................231164.00164012001520
...............................................................................................................................AGAGAATAGATGCTGTG-----AGTAC..............................................................................................................................................................221147.0014702001450
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................203132.3339710003960
...............................................................................................................................AGAGAATAGATGCTGTG-----AGTA...............................................................................................................................................................211126.0012604001220
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................22295.5019100001910
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................22389.6726900002690
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................20389.6726900002690
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC........................................................................................................................23368.6720600002060
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................19365.3319600001960
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC......................................................................................................................25353.6716100001610
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................18347.6714300001430
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................21346.6714000001400
...............................................................................................................................AGAGAATAGATGCTGTG-----AGT................................................................................................................................................................20136.00360400320
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC.......................................................................................................................24234.50690000690
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGT.......................................................................................................................22133.00330000330
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...........................................................................................................................21331.33940000940
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTT..........................................................................................................................19331.33940000940
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................22328.67860000860
............................................................................................................................................................................CACAGTGGCTGTTCTTTT..........................................................................................................................18328.33850000850
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................18326.33790000790
...............................................................................................................................AGAGAATAGATGCTGTG-----AGC................................................................................................................................................................20118.00180000180
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTC......................................................................................................................25118.00180000180
...............................................................................................................................AGAGAATAGATGCTGTG-----AGTATT.............................................................................................................................................................23117.00170400130
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC........................................................................................................................22316.00480000480
.........................................................................................................................................................................TATCACAGTGGCTGTTCTC............................................................................................................................19314.67440000440
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTT...........................................................................................................................19311.00330000330
................................................................................................................................GAGAATAGATGCTGTG-----AGTAT..............................................................................................................................................................21111.00110100100
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG........................................................................................................................21210.50210000210
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..........................................................................................................................22310.00300000300
............................................................................................................................................................................CACAGTGGCTGTTCTTTTTC........................................................................................................................2039.33280000280
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC.......................................................................................................................2229.00180000180
droGri2
A-----------------------------------------------------------------------------------------------------------------GCCTTTAATGTAAAGAGAATAGATGCTGTGCTGTATGTTGAACG-T-ATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGC--CGTACAACAAA-ATGA-------GTAA--------------------------------TG------------TT-A----TC-AACCG----------CTGCATASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................2262.5015105
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2161.831129
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................2060.33202
droAna3
AAA-ATGCATCAA-AAA---TAA-------------------------------C------------------GAGTTAG---GTGAC----AGGACTCGCA--G-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTAAGTTTCA------AAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAA-ACC--CGAGAA------------------------------T---GTTCTGTGAT-------T-T--------TT-CGT---TATCCGACGACASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22315043.3345130367447520074
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2133049.3391489790392028
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................223462.001386013860000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................203276.00828267920082
...............................................................................................................................AGAGAATAGTGGCTGTGCTGTA...................................................................................................................................................................22172.00720720000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................21357.6717301720001
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................20337.0011101110000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21335.6710740670000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................23334.6710401040000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................23333.671013980000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................19317.33528390023
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................23214.00282240011
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC.......................................................................................................................22112.00120120000
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................1938.67260260000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................2038.00245190000
...............................................................................................................................AGAGAATAGTGGCTGTGCTGT....................................................................................................................................................................2117.007070000
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................1836.00180180000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................2036.00187110000
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................1836.00180180000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................2235.33160150001
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC.......................................................................................................................2415.005050000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................2134.33130130000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................2233.3310190000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................2433.009170010
...............................................................................................................................AGAGAATAGTGGCTGTGCTGC....................................................................................................................................................................2113.003030000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2422.505050000
................................................................................................................................GAGAATAGTGGCTGTGCTGTA...................................................................................................................................................................2112.002110000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTT...........................................................................................................................1932.006330000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTT..........................................................................................................................1931.675050000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..........................................................................................................................2231.675050000
...............................................................................................................................AGAGAATAGTGGCTGTGCTG.....................................................................................................................................................................2011.001010000
......................................................................................................................TTAAAGTAGAGAGAATAGTGGCT...........................................................................................................................................................................2311.001010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTC............................................................................................................................1931.003030000
...............................................................................................................................AGAGAATAGTGGCTGTGCT......................................................................................................................................................................1911.001010000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.........................................................................................................................2131.003030000
...............................................................................................................................AGAGAATAGTGGCTGTGCTGTC...................................................................................................................................................................2211.001010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA........................................................................................................................2330.672020000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTT...........................................................................................................................2130.672020000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTAC.........................................................................................................................2230.672020000
............................................................................................................................................................................CACAGTGGCTGTTCTTTT..........................................................................................................................1830.672020000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA.......................................................................................................................2420.501010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA........................................................................................................................2330.331010000
droBip1
AAA-ATTCATCAG-AGA---T------------------------CG-AGTTA-G-----------------------------TGACTTGAAGGAGTCGCA--G-GA-TACCCGCCTTTAAAGTAGAGAGAATAGTGGCTGTGCTGTATGTTACCA-------TTCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGC--CAAACAGCCAAGACC--CAAGAA------------------------------T-----TG--TGAT-------T---------TTT-CGC---CA---TCCGACASizeHit CountTotal NormTotal
No Reads
droKik1
AAG-ATTCAACGATTG-------------------------------------AT------------------CAGTTCTAAGGTTCT----ATGAGC--AAGGA-TC-ACACAGCCTTTAAAGTAGAGAGAATAGCTGCTGCGCTGTATGTTTGC-------CATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--GAAACACCAAG-GCT--C----ATTT---------------------------------GG---G-T-------T-TATATT---TT-CTT---AG---TGTGACASizeHit CountTotal NormTotal
No Reads
droFic1
AAA-GCTCATCAA-AGGAAAAAACA------TAC----------TTAAAGTTA-C------------------AATTTTA---GTG--------------AT--G-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTATTTATCAAAAATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAT-G----------TTTT--------------------------------TG-----T-------T-TTTC---TTTT-CGTTCGTA---TCTGACASizeHit CountTotal NormTotal
No Reads
droEle1
AAA-ACTCATCGATGGGAAATACAA------T------------CCAAAA----A------------------CAGTTCT---GTG--------------CC--G-AA-TCTCAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTAACTAAAC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAA-GCGGCC---AATATT--------------------------------TG-----T-------T-TTCA----TTT-T----------CCCGACASizeHit CountTotal NormTotal
No Reads
droRho1
AAT-ACTCATCGA-GGGAAATAAGA------T------------TCGAAATTA-T------------------CAGTTCT---GTG--------------CC--A-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTA-AC-TATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CAAACATCAAA-G----------CTCT--------------------------------AG-----T-------T-TTAT----TTT-T----------CCTGACASizeHit CountTotal NormTotal
No Reads
droBia1
AAA-GCTCATCAA-GGGAAATACCA------T------------CCGAAATTA-C------------------CTGTCCA---ATG--------------CT--G-AA-ACACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACCAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTGACATCAGA-C----------GTTT--------------------------------AG-----T-----------------TCT-C----------CCTGACASizeHit CountTotal NormTotal
No Reads
droTak1
CCAAAAACATCAA-GGGATATACTA------T---TAA------CCA-AG---------------------------------------------------T--A-AA-ACATAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTACTAAGC-TATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACACCAGT-C----------G------------------------------------------T-------T-TTAG----TTT-A----------TCTGACASizeHit CountTotal NormTotal
No Reads
droEug1
ACT-ATTCATCAA-GGTTATTAA-ACTA--ATAC-------------------------------------------TCA---GTG--------------CC--A-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGTTGTATGCTACTTAAC-AATATCTATATCACAGTGGCTGTTCTTTTTGCATCTAAAGTGA--CTAACATCATT-C----------GTTT--------------------------------TG-----TTTTTTGTT-T----TA---T-A----------TTTGACASizeHit CountTotal NormTotal
No Reads
dm3
ACA-ACTCATCAA-GGAAAATGAAA------G------------TCAAAGTTG-GCAGCTTACTTAA------------------A--------------CT--T-AA-TCACAGCCTTTAATGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATT-A----------TTTA-AT------------------------------------T-------T-TTTTTTTTTTT-G----------GCACACGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................22119494.0019494000000751581800000000000000000000000020500000001000000000000000000000000000000000000003076389733929474110110000000311210711417442800205692920010000000000000000000005105309273530000000000000000000000000000001000000000000001000000000000000000000000100100215013600000004127000010100000000000000000000000000000000000000000010123402500200000000002104030001100002120010000
...............................................................................................................................AGGGAATAGTTGCTGTGCTG.....................................................................................................................................................................2015013.0050130000001710000000000000000000000000416600000000000000000000000000000000000000000000008110052800000000000001000000134600600120000000000000000000000003597921500002000000000000000000000000000000000000000000000000000000000100000000000000000000000000330000000000000000000000000000000000110000000000000490100200000000000000000000100000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
...............................................................................................................................AGGGAATAGTTGCTGTGCTGT....................................................................................................................................................................2111791.0017910000005900000000000000000000000000164000000000000000000000000000000000000000000000018338154243000000000000000100120321760016204100000000000000000000000067410240900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000530000000000000000000001000000000000000000000000000763000000000000000000000000000000000000000000
................................................................................................................................GGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................2111069.0010690000001012100000000000000000000000003000000000000000000000000000000000000000000000025442106414200010001010000200003296200274052000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000010000000000000000000000000000000000000000000000000092000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAA..................................................................................................................................................................231372.003720000001000000000000000000000000000200000000000000000000000000000000000000000000000291400480000000000000000000058000200400000000000000000000000004627500000000000000000000000000000000000000000000000000000000000000000000000000000000100000000110000000000000000000000000000000000000000000000000195000000000000000010000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................232281.005620000003121360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203249014500200000000000000000000000000000000000000010002000000000003298700000000000000001003000030000003690011010
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................241193.00193000000052200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030270820000000000000000000000000000000000000000000000001000000000128900000000000000000000000000000000130001010
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
...............................................................................................................................AGGGAATAGTTGCTGTGCT......................................................................................................................................................................19197.00970000000000000000000000000000000000240000000000000000000000000000000000000000000000150122200000000000000000000000003002000000000000000000000000054800000000000000000000000000000000000000000000000000000000000000000000000000000001000000000021000000000000000000000000000000000000000000000000013100200000000000000000000000000000000000000
................................................................................................................................GGGAATAGTTGCTGTGCTGT....................................................................................................................................................................20188.008800000002000000000000000000000000005300000000000000000000000000000000000000000000008000120000000000000000000033000100100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTT...................................................................................................................................................................22179.00790000000100000000000000000000000000000000000000000000000000000000000000000000000001351170000000000000003000021000000040000000000000000000000001102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000010000000000000000000015000000000000000000000000000000000000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTC...................................................................................................................................................................22172.00720000000000000000000000000000000000000000000000000000000000000000000000000000000004000400000000000000010000010000000000000000000000000000000023430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000100000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAAA.................................................................................................................................................................24165.0065000000000000000000000000000000000010000000000000000000000000000000000000000000000116001000000000000000000000000001000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
.....................................................................................................................................................AGTTAATATAC-CATATCTA...............................................................................................................................................19147.00470000000000000000000000000000000000000000000000000000000000000000000000000000000002260490000000000000000000002000100200000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTACTG................................................................................................................................................................25130.00300000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTG...................................................................................................................................................................22125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000801040000000000000001000000000100000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
.................................................................................................................................GGAATAGTTGCTGTGCTGTA...................................................................................................................................................................20121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000830050000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................GGGAATAGTTGCTGTGCTG.....................................................................................................................................................................19120.0020000000000000000000000000000000000040000000000000000000000000000000000000000000000600010000000000000000000001000200300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAAG.................................................................................................................................................................24120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
..................................................................................................................................GAATAGTTGCTGTGCTGTA...................................................................................................................................................................19118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000001000210000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..........................................................................................................................21316.6750000010515131000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000004000000000000000000000000000000001000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................21313.67410000202427000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000015700000000000000000000000000000000000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAT..................................................................................................................................................................23113.0013000000010000000000000000000000000000000000000000000000000000000000000000000000000500010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
droSim2
ACA-ATTCATCAA-GGAAAATGAAA------G------------CCA-AGTTG-GCAGCTTACT-AA------------------A--------------CT--T-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTTATATAC-CGTATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATT-A----------TTTA-AT----T------------------------TA------------CTTTTTT---TTTT-C----------GCACACGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................223816.00244800797972722282537553601315000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................221453.0045312421000303801500000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................213162.6748810811199451247312154104000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................23266.0013200851024018751000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................19361.3318400212713562641000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAA..................................................................................................................................................................23160.0060005700000101100000
...............................................................................................................................AGGGAATAGTTGCTGTGCTG.....................................................................................................................................................................20159.0059005400000000500000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGT....................................................................................................................................................................21151.0051004000000710300000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................23350.671520001009061000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................20350.671520033123571614952001000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................24343.331300000007852000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................18339.001170000610514001000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................24138.00380021200128130000000
...............................................................................................................................AGGGAATAGTTGCTGTGC.......................................................................................................................................................................18120.0020002000000000000000
................................................................................................................................................................................GTGGCTGTTCTTTTT.........................................................................................................................15318.67560000000027281000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21318.3355000550000000000000
................................................................................................................................GGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................21116.0016001500000000100000
.........................................................................................................................................................................TATCACAGTGGCTGT................................................................................................................................15315.00450000000012302010000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA........................................................................................................................23313.33400000002119000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA.......................................................................................................................24312.67380000002117000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAAA.................................................................................................................................................................24111.0011001000000000100000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGG....................................................................................................................................................................21110.0010001000000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................2237.3322000000128101000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGC....................................................................................................................................................................2117.00700700000000000000
................................................................................................................................................................................GTGGCTGTTCTTTTTGT.......................................................................................................................1716.00600000000330000000
..................................................................................................................................GAATAGTTGCTGTGCTGTA...................................................................................................................................................................1915.00500500000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTAA.....................................................................................................................2613.00300000021000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTT...................................................................................................................................................................2213.00300300000000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAC..................................................................................................................................................................2313.00300300000000000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................2032.67800053000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTT...............................................................................................................................1632.67800000010052000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................2222.50500040001000000000
...............................................................................................................................AGGGAATAGTTGCTGTGG.......................................................................................................................................................................1812.00200200000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA......................................................................................................................2512.00200000011000000000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................2031.33400030010000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..........................................................................................................................2131.33400000022000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTT......................................................................................................................2521.00200000020000000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2311.00100010000000000000
................................................................................................................................GGGAATAGTTGCTGTGCTGTAA..................................................................................................................................................................2211.00100100000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA.......................................................................................................................2421.00200000011000000000
................................................................................................................................GGGAATAGTTGCTGTGCTG.....................................................................................................................................................................1911.00100000000000100000
................................................................................................................................GGGAATAGTTGCTGTGCTGTT...................................................................................................................................................................2111.00100100000000000000
...................................................................................................................................................................TATCTATATCACAGTGGCTGTT...............................................................................................................................2211.00100100000000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCT......................................................................................................................................................................1911.00100000000100000000
................................................................................................................................................................................GTGGCTGTTCTTTTTG........................................................................................................................1621.00200000000020000000
............................................................................................................................TAGAGGGAATAGTTGCTGTGCT......................................................................................................................................................................2211.00100000000000100000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTG...................................................................................................................................................................2211.00100100000000000000
....................................................................................................................................ATAGTTGCTGTGCTGTAA..................................................................................................................................................................1811.00100100000000000000
.................................................................................................................................................................................TGGCTGTTCTTTTTGT.......................................................................................................................1621.00200000000020000000
.....................................................................................................................................................AGTTTATATAC-CGTATCTA...............................................................................................................................................1911.00100000000010000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................2230.67200010010000000000
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................1830.67200010010000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................2030.67200200000000000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................2130.67200020000000000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA........................................................................................................................2230.67200000002000000000
droSec2
ACA-ATTCATCAA-GGAAAATTA-A------G------------CCA-AGTTG-GCAGCTTACT-AA------------------A--------------CT--T-AA-TCACAGCCTTTAAAGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATATAC-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GCATTTTACATCATT-A----------TTTA-AT----T------------------------TA------------CT-T----T-TTTT-T----------GCACACGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22327140.338142117131478922772
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2138065.33241962271023821138
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................2323579.5071591011697978
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................2031417.004251233419035
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2411338.001338390127029
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................193259.677793075719
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................233126.33379203689
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................183112.00336003342
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21392.0027614701281
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................22171.007120690
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................18367.33202101965
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA.......................................................................................................................24254.50109101080
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................22332.339720941
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................22329.008710851
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................22222.5045160290
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................20319.6759100481
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTTG........................................................................................................................19216.503300330
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................24314.004200411
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTTGT.......................................................................................................................20113.001300130
...............................................................................................................................AGGGAATAGTTGCTGTGCTG.....................................................................................................................................................................20112.001210101
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................23112.00124080
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................20311.3334230110
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................23311.003310320
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTT......................................................................................................................25210.002000191
...............................................................................................................................AGGGAATAGTTGCTGTGCTGT....................................................................................................................................................................2119.0090090
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................2237.332220200
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA......................................................................................................................2517.0070061
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................1936.331920170
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTT..........................................................................................................................1935.331620140
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC.......................................................................................................................2425.001000100
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2215.0051040
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..........................................................................................................................2134.331300130
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................2133.671100110
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA........................................................................................................................2333.331000100
............................................................................................................................................................................CACAGTGGCTGTTCTTTT..........................................................................................................................1832.3371060
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTT...........................................................................................................................1932.3375020
................................................................................................................................GGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................2112.0020011
...............................................................................................................................AGGGAATAGTTGCTGTGCT......................................................................................................................................................................1912.0020020
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................2132.0062040
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTA...........................................................................................................................2031.0030030
............................................................................................................................................................................CACAGTGGCTGTTCTTTTTG........................................................................................................................2021.0021010
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTTGTA......................................................................................................................2111.0010010
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA........................................................................................................................2231.0030030
............................................................................................................................TAGAGGGAATAGTTGCTGTGC.......................................................................................................................................................................2111.0010010
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG........................................................................................................................2121.0021010
...............................................................................................................................................................................AGTGGCTGTTCTTTTTGT.......................................................................................................................1811.0010001
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................2031.0030021
droYak3
ACA-ACTCATCAA-GGGAAATGAAA------G------------CCAAAGTCG-GCATCTCACT-AA------------------G--------------TT--T-AA-TCACAGCCTTTAACGTAGAGGGAATAGTTGCTGTGCTGTAAGTTAATAACA-AATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATT-A----------AT-A-AT----T------------------------TG-----T----TGCT-T------TTTT-T----------GCTCACASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22388528.672655860234265335500120000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................21315870.00476100634753810080000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................2232566.67770000770000000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................2211641.001641101583570000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................2031006.673020015300310010000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGT....................................................................................................................................................................211363.0036300348150000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................213276.008280082800000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................232209.004180241600000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................233165.004950149400000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................203138.334150041500000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................241135.001350113400000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGC....................................................................................................................................................................211131.001310013100000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................21392.002760926700000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................23390.332710226900000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................19362.001860218400000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTG.....................................................................................................................................................................20152.0052004750000000
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................18347.001410114000000000
................................................................................................................................GGGAATAGTTGCTGTGCTGTA...................................................................................................................................................................21146.0046004240000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................22331.3394009400000000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................20322.3367006700000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC.......................................................................................................................24221.5043004300000000
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................19321.0063016200000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................21316.6750005000000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................20312.6738023600000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTT...................................................................................................................................................................22112.0012001020000000
...............................................................................................................................AGGGAATAGTTGCTGTGCT......................................................................................................................................................................19110.001000910000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTAA..................................................................................................................................................................2319.00900810000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................1837.3322012100000000
...............................................................................................................................AGGGAATAGTTGCTGTGC.......................................................................................................................................................................1817.00700700000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................2235.6717001700000000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..........................................................................................................................2235.6717001700000000
...............................................................................................................................AGGGAATAGTTGCTGTGCTGTC...................................................................................................................................................................2215.00500500000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.........................................................................................................................2134.6714001400000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................2224.50900900000000
................................................................................................................................GGGAATAGTTGCTGTGCTGT....................................................................................................................................................................2014.00400400000000
...............................................................................................................................AGGGAATAGTTGCTGTGCC......................................................................................................................................................................1913.00300300000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTGC.........................................................................................................................2233.00900900000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTC............................................................................................................................1932.67800800000000
............................................................................................................................................................................CACAGTGGCTGTTCTTTT..........................................................................................................................1832.67800800000000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTT..........................................................................................................................1932.33701600000000
droEre2
AAA-ACTCATCAATGGGAAATGAAA------G------------CCAAAGTTG-CCAGCTTACT-TA------------------G--------------CT--A-AA-TCGCAGCCTTTAAAGTAGAGGGAATAGTTGCCGTGCTGTAAGTTAATATAT-CATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGC--CTAACATCATC-A----------TTT---------------------------------TG-----T----TGCC-T----TATTTT-G----------GTGCACGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.........................................................................................................................22310965.6732897490027970056160
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTT..........................................................................................................................2132527.677583713686301510
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.........................................................................................................................223198.00594958500000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTT...........................................................................................................................203195.675877550501240
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.........................................................................................................................213131.673953702500000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG........................................................................................................................232114.002284518200100
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................24182.0082166600000
...............................................................................................................................AGGGAATAGTTGCCGTGCTGTA...................................................................................................................................................................22128.002821808000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTC..........................................................................................................................21326.007817700000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC........................................................................................................................23319.005715600000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA........................................................................................................................23318.6756163800020
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTT..........................................................................................................................20317.3352411100000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTC...........................................................................................................................20316.334904801000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTT............................................................................................................................19314.3343103001110
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTT.........................................................................................................................20310.673223900000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC.......................................................................................................................2425.501101100000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.........................................................................................................................2235.331661000000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG........................................................................................................................2222.5052300000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTG..........................................................................................................................2132.3374300000
............................................................................................................................................................................CACAGTGGCTGTTCTTTTT.........................................................................................................................1932.0061500000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2212.0021100000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTT...........................................................................................................................1932.0066000000
...............................................................................................................................AGGGAATAGTTGCCGTGCTGT....................................................................................................................................................................2112.0020101000
...............................................................................................................................AGGGAATAGTTGCCGTGCTGC....................................................................................................................................................................2112.0020200000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGT.......................................................................................................................2312.0021100000
................................................................................................................................GGGAATAGTTGCCGTGCTGTA...................................................................................................................................................................2112.0020200000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC.......................................................................................................................2431.6750500000
.............................................................................................................................................................................ACAGTGGCTGTTCTTTTT.........................................................................................................................1831.3340400000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.........................................................................................................................2331.3342200000
........................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..........................................................................................................................2231.3341300000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTA..........................................................................................................................2131.0030300000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.........................................................................................................................2231.0030300000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGTA......................................................................................................................2511.0011000000
.............................................................................................................................AGAGGGAATAGTTGCCGTGCT......................................................................................................................................................................2111.0010100000
.........................................................................................................................................................................TATCACAGTGGCTGTTCT.............................................................................................................................1831.0032100000
................................................................................................................................GGGAATAGTTGCCGTGCTGT....................................................................................................................................................................2011.0011000000
...........................................................................................................................................................................TCACAGTGGCTGTTCTTTT..........................................................................................................................1930.6720200000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC........................................................................................................................2330.6720200000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.........................................................................................................................2230.6722000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA.......................................................................................................................2430.6722000000
............................................................................................................................................................................CACAGTGGCTGTTCTTTT..........................................................................................................................1830.6720200000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTACC........................................................................................................................2330.6720200000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTG.........................................................................................................................2130.6722000000
.........................................................................................................................................................................TATCACAGTGGCTGTTCTTTGC.........................................................................................................................2230.3310100000
..........................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA........................................................................................................................2230.3311000000

Generated: 10/20/2015 at 10:20 PM