ID:

dps-mir-5

 Coordinate:

3:12677240-12677311 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.4 -32.2 -32.2

Flybase annnotation

pre_miRNA [Dpse\mir-5-RM]; utr3 [utr3_minus_3616]; miRNA [Dpse\miR-5-RA]

No Repeatable elements found

Sense Strand Reads

ACATCCATCCCAGTGTCATTGATTAGTTCCCAACTTCCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTAATTCACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGTCTGCGCCCACAGCCACACATGGGAAACGAAACGCTCAGCGGTGGAG

***************************************..((((.((.((((((((((((.(((((((((((((((...((((.....)))))))))))))))))))))))))).))))).))))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total M059

embryo

 GSM343916

embryo

 M040

female body

 SRR902011

testis

 M062

head

 SRR902012

CNS imaginal disc

 V112

male body		 M022

male body		 GSM444067

head

 SRR902010

ovaries
......................................................AAAGGAACGATCGTTGTGATATG............................................................................................... 23 0 1 20861.00 20861 10780 7312 2642 80 28 8 2 2 4 3
...............................................................................................TATCACAGTGATTTTCCTTTAT....................................................... 22 0 1 11323.00 11323 7858 3041 419 1 4 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATA...................................................... 23 0 1 10758.00 10758 8461 1872 418 3 4 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAT................................................................................................ 22 0 1 7060.00 7060 4499 1796 708 23 20 8 5 1 0 0
......................................................AAAGGAACGATCGTTGTGATA................................................................................................. 21 0 1 1461.00 1461 884 454 92 29 0 2 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATA...................................................... 22 0 1 783.00 783 589 138 55 0 1 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTAC....................................................... 22 1 1 780.00 780 777 3 0 0 0 0 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTAT....................................................... 21 0 1 762.00 762 524 196 41 0 0 1 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 663.00 663 650 8 1 0 4 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAC................................................................................................ 22 1 1 640.00 640 634 3 1 0 2 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAT.................................................................................................. 20 0 1 598.00 598 274 265 26 14 0 9 7 2 1 0
......................................................AAAGGAACGATCGTTGTGATATGT.............................................................................................. 24 1 1 570.00 570 383 95 89 2 1 0 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTAT....................................................... 22 1 1 397.00 397 391 6 0 0 0 0 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTATA...................................................... 23 1 1 382.00 382 381 1 0 0 0 0 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTATA...................................................... 23 1 1 291.00 291 290 1 0 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 287.00 287 283 2 0 0 2 0 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTAT....................................................... 22 1 1 276.00 276 274 2 0 0 0 0 0 0 0 0
.......................................................AAGGAACGATCGTTGTGATATG............................................................................................... 22 0 1 268.00 268 25 3 236 4 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAA..................................................... 24 1 1 260.00 260 158 85 16 1 0 0 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTAT....................................................... 22 1 1 248.00 248 245 3 0 0 0 0 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTATA...................................................... 23 1 1 241.00 241 239 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATT............................................................................................... 23 1 1 224.00 224 123 88 10 1 1 0 0 1 0 0
...............................................................................................TATCACAGTGATTTTCCTTTA........................................................ 21 0 1 202.00 202 153 32 14 2 1 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGC.............................................................................................. 24 0 1 139.00 139 122 17 0 0 0 0 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 119.00 119 116 3 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGA.............................................................................................. 24 1 1 113.00 113 70 25 17 1 0 0 0 0 0 0
................................................................................................AGCACAGTGATTTTCCTTTATA...................................................... 22 1 1 112.00 112 110 1 0 0 1 0 0 0 0 0
......................................................AAATGAACGATCGTTGTGATATG............................................................................................... 23 1 1 112.00 112 110 1 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATC............................................................................................... 23 1 1 107.00 107 80 18 1 7 0 0 1 0 0 0
................................................................................................AGCACAGTGATTTTCCTTTAT....................................................... 21 1 1 98.00 98 98 0 0 0 0 0 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 94.00 94 87 7 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGCTTTTCCTTTATA...................................................... 23 1 1 94.00 94 80 14 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGCTTTTCCTTTAT....................................................... 22 1 1 89.00 89 55 34 0 0 0 0 0 0 0 0
..............................................................................................CTATCACAGTGATTTTCCTTTAT....................................................... 23 1 1 82.00 82 80 2 0 0 0 0 0 0 0 0
.......................................................AAGGAACGATCGTTGTGATAT................................................................................................ 21 0 1 82.00 82 5 1 76 0 0 0 0 0 0 0
....................................................TAAAAGGAACGATCGTTGTGAT.................................................................................................. 22 0 1 78.00 78 43 33 2 0 0 0 0 0 0 0
..............................................................................................CTATCACAGTGATTTTCCTTTATA...................................................... 24 1 1 74.00 74 66 7 1 0 0 0 0 0 0 0
...............................................................................................TTTCACAGTGATTTTCCTTTATA...................................................... 23 1 1 74.00 74 73 1 0 0 0 0 0 0 0 0
...............................................................................................TTTCACAGTGATTTTCCTTTAT....................................................... 22 1 1 71.00 71 71 0 0 0 0 0 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATATG............................................................................................... 23 1 1 69.00 69 39 30 0 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATA................................................................................................. 21 1 1 65.00 65 63 1 0 0 0 0 1 0 0 0
......................................................AAAGGAACGATCGTTGTGAC.................................................................................................. 20 1 1 64.00 64 64 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTT......................................................... 20 0 1 60.00 60 8 50 2 0 0 0 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTAC....................................................... 21 1 1 60.00 60 59 1 0 0 0 0 0 0 0 0
......................................................AAAGGGACGATCGTTGTGATATG............................................................................................... 23 1 1 59.00 59 33 24 2 0 0 0 0 0 0 0
.................................................................................................TCACAGTGATTTTCCTTTATA...................................................... 21 0 1 59.00 59 41 13 5 0 0 0 0 0 0 0
......................................................AACGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 54.00 54 49 5 0 0 0 0 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTAC....................................................... 22 2 1 47.00 47 47 0 0 0 0 0 0 0 0 0
................................................................................................ATAACAGTGATTTTCCTTTAT....................................................... 21 1 1 46.00 46 44 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGTATG............................................................................................... 23 1 1 44.00 44 2 42 0 0 0 0 0 0 0 0
......................................................AAATGAACGATCGTTGTGATAT................................................................................................ 22 1 1 44.00 44 44 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTTCTTTAT....................................................... 22 1 1 44.00 44 25 19 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGA................................................................................................... 19 0 1 42.00 42 21 13 2 3 0 3 0 0 0 0
......................................................AAAGGAACGATCGTTGGGATATG............................................................................................... 23 1 1 41.00 41 16 24 0 0 1 0 0 0 0 0
...................................TCCTAGGGGCCATACGCTA...................................................................................................................... 19 0 1 40.00 40 4 32 4 0 0 0 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 39.00 39 39 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGCTGTGATATG............................................................................................... 23 1 1 39.00 39 8 28 3 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATAC................................................................................................ 22 2 1 39.00 39 39 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGCGATTTTCCTTTATA...................................................... 23 1 1 39.00 39 28 11 0 0 0 0 0 0 0 0
...................................................................................................ACAGTGATTTTCCTTTAT....................................................... 18 0 1 38.00 38 2 36 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGGTGTGATATG............................................................................................... 23 1 1 38.00 38 8 30 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTTCTTTATA...................................................... 23 1 1 38.00 38 25 13 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGCGATTTTCCTTTAT....................................................... 22 1 1 37.00 37 31 6 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAC..................................................... 24 1 1 37.00 37 37 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATGTG............................................................................................... 23 1 1 37.00 37 8 28 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATA............................................................................................... 23 1 1 36.00 36 21 15 0 0 0 0 0 0 0 0
...............................................................................................CATCACAGTGATTTTCCTTTATA...................................................... 23 1 1 35.00 35 33 2 0 0 0 0 0 0 0 0
.................................................................................................TCACAGTGATTTTCCTTTAT....................................................... 20 0 1 35.00 35 16 15 4 0 0 0 0 0 0 0
................................................................................................ATAACAGTGATTTTCCTTTATA...................................................... 22 1 1 34.00 34 33 1 0 0 0 0 0 0 0 0
...............................................................................................GATCACAGTGATTTTCCTTTATA...................................................... 23 1 1 34.00 34 31 1 1 0 1 0 0 0 0 0
...............................................................................................CATCACAGTGATTTTCCTTTAT....................................................... 22 1 1 32.00 32 30 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGTTATG............................................................................................... 23 1 1 32.00 32 12 20 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATCTG............................................................................................... 23 1 1 32.00 32 0 32 0 0 0 0 0 0 0 0
......................................................AAGGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 31.00 31 12 18 1 0 0 0 0 0 0 0
.................................................................................................TCACAGTGATTTTCCTTTATAA..................................................... 22 1 1 31.00 31 17 12 2 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATGT.............................................................................................. 24 2 1 31.00 31 31 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGCGATATG............................................................................................... 23 1 1 31.00 31 7 22 2 0 0 0 0 0 0 0
........................................................AGGAACGATCGTTGTGATATG............................................................................................... 21 0 1 30.00 30 7 0 23 0 0 0 0 0 0 0
......................................................AAAGAAACGATCGTTGTGATATG............................................................................................... 23 1 1 30.00 30 14 15 1 0 0 0 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 30.00 30 30 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATACC............................................................................................... 23 2 1 29.00 29 18 9 2 0 0 0 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATATG............................................................................................... 23 1 1 29.00 29 13 16 0 0 0 0 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATAT................................................................................................ 22 1 1 28.00 28 25 3 0 0 0 0 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTATAA..................................................... 23 1 1 28.00 28 17 8 3 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGCTATG............................................................................................... 23 1 1 27.00 27 0 27 0 0 0 0 0 0 0 0
....................................................TAAAAGGAACGATCGTTGTGATA................................................................................................. 23 0 1 26.00 26 11 13 2 0 0 0 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTAC....................................................... 22 2 1 26.00 26 26 0 0 0 0 0 0 0 0 0
...................................................................................................ACAGTGATTTTCCTTTATA...................................................... 19 0 1 26.00 26 4 22 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAGATG............................................................................................... 23 1 1 26.00 26 6 20 0 0 0 0 0 0 0 0
...............................................................................................GATCACAGTGATTTTCCTTTAT....................................................... 22 1 1 25.00 25 21 4 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGGGATAT................................................................................................ 22 1 1 25.00 25 13 12 0 0 0 0 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTAC....................................................... 22 2 1 25.00 25 25 0 0 0 0 0 0 0 0 0
......................................................AAAGGTACGATCGTTGTGATATG............................................................................................... 23 1 1 24.00 24 10 14 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAT..................................................... 24 1 1 24.00 24 11 11 2 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATTTG............................................................................................... 23 1 1 23.00 23 3 20 0 0 0 0 0 0 0 0
...............................................................................................AATCACAGTGATTTTCCTTTATA...................................................... 23 1 1 22.00 22 21 1 0 0 0 0 0 0 0 0
......................................................AAAGGAGCGATCGTTGTGATATG............................................................................................... 23 1 1 21.00 21 7 13 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTAATATG............................................................................................... 23 1 1 21.00 21 12 9 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGCTGTGATAT................................................................................................ 22 1 1 21.00 21 8 13 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATT...................................................... 23 1 1 21.00 21 18 3 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGATGTGATATG............................................................................................... 23 1 1 21.00 21 7 14 0 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGAT.................................................................................................. 20 1 1 21.00 21 20 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATAT................................................................................................ 22 1 1 20.00 20 13 7 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCATTGTGATATG............................................................................................... 23 1 1 20.00 20 9 10 1 0 0 0 0 0 0 0
......................................................AAAGGAACGCTCGTTGTGATATG............................................................................................... 23 1 1 19.00 19 1 17 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTCGTGATATG............................................................................................... 23 1 1 18.00 18 6 11 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGAGATATG............................................................................................... 23 1 1 18.00 18 2 16 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGTAT................................................................................................ 22 1 1 18.00 18 1 17 0 0 0 0 0 0 0 0
......................................................AAAAGAACGATCGTTGTGATATG............................................................................................... 23 1 1 18.00 18 6 11 1 0 0 0 0 0 0 0
................................................................................................ATCACAGTGATTTTCCTTTA........................................................ 20 0 1 17.00 17 13 0 4 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGACATG............................................................................................... 23 1 1 17.00 17 4 12 1 0 0 0 0 0 0 0
......................................................GAAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 17.00 17 8 7 2 0 0 0 0 0 0 0
......................................................AAAGGAACGTTCGTTGTGATATG............................................................................................... 23 1 1 17.00 17 6 11 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGGTTTTCCTTTAT....................................................... 22 1 1 16.00 16 6 8 2 0 0 0 0 0 0 0
...............................................................................................TATCGCAGTGATTTTCCTTTATA...................................................... 23 1 1 16.00 16 10 5 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATACG............................................................................................... 23 1 1 16.00 16 5 10 1 0 0 0 0 0 0 0
......................................................AAAGTAACGATCGTTGTGATATG............................................................................................... 23 1 1 16.00 16 13 1 2 0 0 0 0 0 0 0
...............................................................................................TATCTCAGTGATTTTCCTTTATA...................................................... 23 1 1 16.00 16 15 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATTGTTGTGATATG............................................................................................... 23 1 1 15.00 15 7 7 1 0 0 0 0 0 0 0
..............................................................................................CGATCACAGTGATTTTCCTTTAT....................................................... 23 2 1 15.00 15 14 1 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGGGATTTTCCTTTAT....................................................... 22 1 1 15.00 15 2 13 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTACTTTAT....................................................... 22 1 1 15.00 15 1 14 0 0 0 0 0 0 0 0
...............................................................................................TATCACGGTGATTTTCCTTTATA...................................................... 23 1 1 15.00 15 10 5 0 0 0 0 0 0 0 0
......................................................AAATGAACGATCGTTGTGATA................................................................................................. 21 1 1 15.00 15 15 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATC...................................................... 23 1 1 15.00 15 10 3 1 0 1 0 0 0 0 0
...............................................................................................TATCACAGAGATTTTCCTTTAT....................................................... 22 1 1 15.00 15 6 9 0 0 0 0 0 0 0 0
..................................TTCCTAGGGGCCATACGCTA...................................................................................................................... 20 0 1 15.00 15 1 14 0 0 0 0 0 0 0 0
......................................................AAAGGAACCATCGTTGTGATATG............................................................................................... 23 1 1 15.00 15 14 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACAATCGTTGTGATATG............................................................................................... 23 1 1 15.00 15 9 6 0 0 0 0 0 0 0 0
......................................................AACGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 15.00 15 14 1 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGAGATTTTCCTTTATA...................................................... 23 1 1 14.00 14 10 4 0 0 0 0 0 0 0 0
.......................................................AAGGAACGATCGTTGTGATA................................................................................................. 20 0 1 14.00 14 3 0 11 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTTATATG............................................................................................... 23 1 1 14.00 14 4 9 1 0 0 0 0 0 0 0
......................................................AAAGGAACGGTCGTTGTGATATG............................................................................................... 23 1 1 14.00 14 7 7 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTT............................................................................................. 25 2 1 14.00 14 4 8 0 2 0 0 0 0 0 0
...............................................................................................AATCACAGTGATTTTCCTTTAT....................................................... 22 1 1 14.00 14 12 1 1 0 0 0 0 0 0 0
................................................................................................ATCTCAGTGATTTTCCTTTATA...................................................... 22 1 1 14.00 14 14 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGCGATAT................................................................................................ 22 1 1 13.00 13 7 6 0 0 0 0 0 0 0 0
......................................................AAAGGGACGATCGTTGTGATAT................................................................................................ 22 1 1 13.00 13 9 4 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTTT....................................................... 22 1 1 13.00 13 5 8 0 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATGC.............................................................................................. 24 1 1 13.00 13 13 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATGT................................................................................................ 22 1 1 13.00 13 4 9 0 0 0 0 0 0 0 0
......................................................AAAGGAATGATCGTTGTGATATG............................................................................................... 23 1 1 13.00 13 2 11 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTGT....................................................... 22 1 1 13.00 13 7 6 0 0 0 0 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATA................................................................................................. 21 1 1 13.00 13 13 0 0 0 0 0 0 0 0 0
................................................................................................AGCACAGTGATTTTCCTTTAC....................................................... 21 2 1 13.00 13 13 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTCT....................................................... 22 1 1 13.00 13 0 13 0 0 0 0 0 0 0 0
...............................................................................................TATCTCAGTGATTTTCCTTTAT....................................................... 22 1 1 13.00 13 10 3 0 0 0 0 0 0 0 0
................................................................................................AGCTCAGTGATTTTCCTTTAT....................................................... 21 2 1 12.00 12 12 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAA................................................................................................ 22 1 1 12.00 12 5 3 1 3 0 0 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTA........................................................ 21 1 1 12.00 12 11 1 0 0 0 0 0 0 0 0
.....................................................CAAAGGAACGATCGTTGTGATATG............................................................................................... 24 1 1 12.00 12 6 1 5 0 0 0 0 0 0 0
................................................................................................ATCTCAGTGATTTTCCTTTAT....................................................... 21 1 1 12.00 12 12 0 0 0 0 0 0 0 0 0
...............................................................................................TGTCACAGTGATTTTCCTTTATAA..................................................... 24 2 1 12.00 12 12 0 0 0 0 0 0 0 0 0
...............................................................................................TAGCACAGTGATTTTCCTTTATA...................................................... 23 1 1 12.00 12 0 12 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTGTA...................................................... 23 1 1 11.00 11 3 7 1 0 0 0 0 0 0 0
......................................................AAAGGAACGACCGTTGTGATATG............................................................................................... 23 1 1 11.00 11 5 5 0 0 1 0 0 0 0 0
.......................................................AAGGAACGATCGTTGTGATATGT.............................................................................................. 23 1 1 11.00 11 2 0 9 0 0 0 0 0 0 0
...............................................................................................TATCACGGTGATTTTCCTTTAT....................................................... 22 1 1 11.00 11 6 5 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTACTTTATA...................................................... 23 1 1 11.00 11 0 11 0 0 0 0 0 0 0 0
.........................................................GGAACGATCGTTGTGATATG............................................................................................... 20 0 1 10.00 10 2 0 8 0 0 0 0 0 0 0
......................................................AAAGGAACGATTGTTGTGATAT................................................................................................ 22 1 1 10.00 10 8 2 0 0 0 0 0 0 0 0
....................................................TAAAAGGAACGATCGTTGTGAC.................................................................................................. 22 1 1 10.00 10 10 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTCATATG............................................................................................... 23 1 1 10.00 10 1 7 2 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGGTTTTCCTTTATA...................................................... 23 1 1 10.00 10 2 8 0 0 0 0 0 0 0 0
......................................................AAAGGTACGATCGTTGTGATAT................................................................................................ 22 1 1 10.00 10 4 6 0 0 0 0 0 0 0 0
......................................................AAAGGCACGATCGTTGTGATATG............................................................................................... 23 1 1 10.00 10 1 9 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGTTAT................................................................................................ 22 1 1 10.00 10 1 9 0 0 0 0 0 0 0 0
..............................................................................................CGATCACAGTGATTTTCCTTTATA...................................................... 24 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0
...............................................................................................TGTTACAGTGATTTTCCTTTATA...................................................... 23 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTTTGATATG............................................................................................... 23 1 1 10.00 10 8 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAGG............................................................................................... 23 1 1 10.00 10 0 10 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGACTTTCCTTTAT....................................................... 22 1 1 10.00 10 7 3 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATCTTCCTTTAT....................................................... 22 1 1 10.00 10 2 6 1 0 0 0 0 0 1 0
......................................................AAAGGAACGATCGTTGTGATT................................................................................................. 21 1 1 10.00 10 6 3 1 0 0 0 0 0 0 0
...............................................................................................TATCACAGTAATTTTCCTTTAT....................................................... 22 1 1 9.00 9 3 6 0 0 0 0 0 0 0 0
...............................................................................................TATCGCAGTGATTTTCCTTTAT....................................................... 22 1 1 9.00 9 4 5 0 0 0 0 0 0 0 0
......................................................AAAGGAACGAGCGTTGTGATATG............................................................................................... 23 1 1 9.00 9 0 9 0 0 0 0 0 0 0 0
.....................................................AAAAGGAACGATCGTTGTGATAT................................................................................................ 23 0 1 9.00 9 5 0 4 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTT.......................................................... 19 0 1 9.00 9 7 2 0 0 0 0 0 0 0 0
...............................................................................................TATAACAGTGATTTTCCTTTAT....................................................... 22 1 1 9.00 9 0 9 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATAAA.................................................... 25 2 1 9.00 9 7 0 2 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTACA...................................................... 23 1 1 9.00 9 5 4 0 0 0 0 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATATGT.............................................................................................. 24 2 1 9.00 9 7 1 1 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCCTTATA...................................................... 23 1 1 9.00 9 7 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGAACGTTGTGATATG............................................................................................... 23 1 1 8.00 8 3 5 0 0 0 0 0 0 0 0
......................................................AAAGCAACGATCGTTGTGATATG............................................................................................... 23 1 1 8.00 8 1 6 1 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTCTCCTTTAT....................................................... 22 1 1 8.00 8 2 6 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCGTTAT....................................................... 22 1 1 8.00 8 4 4 0 0 0 0 0 0 0 0
...............................................................................................TAGCACAGTGATTTTCCTTTAT....................................................... 22 1 1 8.00 8 2 6 0 0 0 0 0 0 0 0
......................................................AAACGAACGATCGTTGTGATATG............................................................................................... 23 1 1 8.00 8 5 3 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGAGTTTCCTTTAT....................................................... 22 1 1 8.00 8 1 7 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGACTTTCCTTTATA...................................................... 23 1 1 8.00 8 5 3 0 0 0 0 0 0 0 0
.................................................................................................TCACAGTGATTTTCCTTTATAGC.................................................... 23 0 1 8.00 8 5 3 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCATTTAT....................................................... 22 1 1 8.00 8 0 8 0 0 0 0 0 0 0 0
......................................................AAAGGAACTATCGTTGTGATATG............................................................................................... 23 1 1 8.00 8 6 1 1 0 0 0 0 0 0 0
...............................................................................................TTTCACAGTGATTTTCCTTTAC....................................................... 22 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
......................................................ACAGGAACGATCGTTGTGATATG............................................................................................... 23 1 1 8.00 8 1 7 0 0 0 0 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATA................................................................................................. 21 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCT........................................................... 18 0 1 8.00 8 3 5 0 0 0 0 0 0 0 0
................................................................................................AGCTCAGTGATTTTCCTTTATA...................................................... 22 2 1 8.00 8 8 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGGGATTTTCCTTTATA...................................................... 23 1 1 8.00 8 3 5 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTTATTTTCCTTTAT....................................................... 22 1 1 8.00 8 6 2 0 0 0 0 0 0 0 0
......................................................AAAGTAACGATCGTTGTGATAT................................................................................................ 22 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGCTAT................................................................................................ 22 1 1 8.00 8 1 7 0 0 0 0 0 0 0 0
......................................................GAAGGAACGATCGTTGTGATAT................................................................................................ 22 1 1 8.00 8 5 2 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGAAATG............................................................................................... 23 1 1 7.00 7 5 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTTATAT................................................................................................ 22 1 1 7.00 7 4 3 0 0 0 0 0 0 0 0
......................................................AAAGGAGCGATCGTTGTGATAT................................................................................................ 22 1 1 7.00 7 3 3 1 0 0 0 0 0 0 0
...............................................................................................TATAACAGTGATTTTCCTTTATA...................................................... 23 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCTTTGTGATATG............................................................................................... 23 1 1 7.00 7 5 1 1 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTCCCTTTATA...................................................... 23 1 1 7.00 7 4 3 0 0 0 0 0 0 0 0
......................................................AAAGGAACGCTCGTTGTGATAT................................................................................................ 22 1 1 7.00 7 1 6 0 0 0 0 0 0 0 0
...............................................................................................TATCATAGTGATTTTCCTTTATA...................................................... 23 1 1 7.00 7 6 1 0 0 0 0 0 0 0 0
......................................................AAATGAACGATCGTTGTGATATGT.............................................................................................. 24 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
...........................................................................TGCGTTAATTCACCGTTACATA........................................................................... 22 0 1 7.00 7 3 4 0 0 0 0 0 0 0 0
...............................................................................................TATCAAAGTGATTTTCCTTTAT....................................................... 22 1 1 7.00 7 1 6 0 0 0 0 0 0 0 0
......................................................AAAGGCACGATCGTTGTGATAT................................................................................................ 22 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0
................................................................................................ATAACAGTGATTTTCCTTTAC....................................................... 21 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTCATA...................................................... 23 1 1 7.00 7 5 2 0 0 0 0 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTA........................................................ 21 1 1 7.00 7 7 0 0 0 0 0 0 0 0 0
......................................................AGAGGAAAGATCGTTGTGATATG............................................................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCCTTAT....................................................... 22 1 1 7.00 7 6 1 0 0 0 0 0 0 0 0
....................................................................................................CAGTGATTTTCCTTTATA...................................................... 18 0 1 7.00 7 6 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGGTA................................................................................................. 21 1 1 7.00 7 3 3 1 0 0 0 0 0 0 0
..................................................................................................CACAGTGATTTTCCTTTAT....................................................... 19 0 1 7.00 7 0 4 3 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATCT................................................................................................ 22 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0
..............................................................................................CTATCACAGTGATTTTCCTTTAC....................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATT............................................................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTATG...................................................... 23 1 1 7.00 7 5 2 0 0 0 0 0 0 0 0
...............................................................................................TGTTACAGTGATTTTCCTTTAT....................................................... 22 2 1 7.00 7 7 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGTTTTTCCTTTAT....................................................... 22 1 1 7.00 7 1 6 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTAATTTTCCTTTATA...................................................... 23 1 1 7.00 7 6 1 0 0 0 0 0 0 0 0
......................................................AAAGGGACGATCGTTGTGGTATG............................................................................................... 23 2 1 6.00 6 0 6 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTG.................................................................................................... 18 0 1 6.00 6 1 4 1 0 0 0 0 0 0 0
......................................................AAAGGAAGGATCGTTGTGATAT................................................................................................ 22 1 1 6.00 6 3 3 0 0 0 0 0 0 0 0
...............................................................................................TATTACAGTGATTTTCCTTTA........................................................ 21 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGAGTTTCCTTTATA...................................................... 23 1 1 6.00 6 0 6 0 0 0 0 0 0 0 0
...............................................................................................TATCAGAGTGATTTTCCTTTATA...................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACACTGATTTTCCTTTATA...................................................... 23 1 1 6.00 6 5 1 0 0 0 0 0 0 0 0
......................................................AAAGAAACGATCGTTGTGATAT................................................................................................ 22 1 1 6.00 6 1 5 0 0 0 0 0 0 0 0
........................................................AGGAACGATCGTTGTGATAT................................................................................................ 20 0 1 6.00 6 2 0 4 0 0 0 0 0 0 0
......................................................AAAGGAAAGATCGTTGTGATA................................................................................................. 21 1 1 6.00 6 5 1 0 0 0 0 0 0 0 0
......................................................AAAGGGACGATAGTTGTGGTATG............................................................................................... 23 3 1 6.00 6 0 6 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTGTAT....................................................... 22 1 1 6.00 6 2 4 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTAA....................................................... 22 1 1 6.00 6 4 2 0 0 0 0 0 0 0 0
...............................................................................................TATCATAGTGATTTTCCTTTAT....................................................... 22 1 1 6.00 6 4 2 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTCTCCTTTATA...................................................... 23 1 1 6.00 6 3 3 0 0 0 0 0 0 0 0
......................................................AAAAGAACGATCGTTGTGATAT................................................................................................ 22 1 1 6.00 6 4 1 1 0 0 0 0 0 0 0
..................................................................................................CACAGTGATTTTCCTTTATA...................................................... 20 0 1 6.00 6 5 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACAATCGTTGTGATAT................................................................................................ 22 1 1 6.00 6 3 3 0 0 0 0 0 0 0 0
................................................................................................ATCACATTGATTTTCCTTTATA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0
......................................................AAAGGAATGATCGTTGTGATAT................................................................................................ 22 1 1 6.00 6 1 5 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATGGTTGTGATATG............................................................................................... 23 1 1 6.00 6 5 1 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCGTTATA...................................................... 23 1 1 6.00 6 4 1 1 0 0 0 0 0 0 0
................................................................................................TTCACAGTGATTTTCCTTTAT....................................................... 21 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0
......................................................AAATGAACGATCGTTGTGATAC................................................................................................ 22 2 1 6.00 6 6 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCTTTGTGATAT................................................................................................ 22 1 1 6.00 6 4 1 0 0 1 0 0 0 0 0
...............................................................................................TATCACAGTTATTTTCCTTTATA...................................................... 23 1 1 6.00 6 5 1 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTCAT....................................................... 22 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCCTTGTGATATG............................................................................................... 23 1 1 5.00 5 2 2 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCATTGTGATAT................................................................................................ 22 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATG................................................................................................. 21 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0
...............................................................................................TGCCACAGTGATTTTCCTTTATA...................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0
...............................................................................................TACTACAGTGATTTTCCTTTAT....................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATAAG............................................................................................... 23 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGTC............................................................................................. 25 2 1 5.00 5 2 1 1 1 0 0 0 0 0 0
...........................................................................................GATCTATCACAGTGATTTTCCTTTAT....................................................... 26 3 1 5.00 5 5 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGGTGTGATAT................................................................................................ 22 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACTATCGTTGTGATAT................................................................................................ 22 1 1 5.00 5 4 0 1 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTGAT....................................................... 22 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0
...............................................................................................TACCACAGTGATTTTCCTTTATAA..................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0
......................................................ATAGGAACGATCGTTGTGATAC................................................................................................ 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATGG.............................................................................................. 24 1 1 5.00 5 4 0 1 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGACAT................................................................................................ 22 1 1 5.00 5 3 1 1 0 0 0 0 0 0 0
......................................................AAAGGATCGATCGTTGTGATATG............................................................................................... 23 1 1 5.00 5 1 4 0 0 0 0 0 0 0 0
......................................................TAAGGAACGATCGTTGTGATAC................................................................................................ 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0
......................................................AAAGGGACGATCGTTGTGATA................................................................................................. 21 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTATGATATG............................................................................................... 23 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0
......................................................AGAGGAACGATCGTTGTGATATGA.............................................................................................. 24 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAATGATTTTCCTTTAT....................................................... 22 1 1 5.00 5 2 3 0 0 0 0 0 0 0 0
......................................................AAAGGAAGGATCGTTGTGATATG............................................................................................... 23 1 1 5.00 5 2 3 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGAGTTTTCTTTATA...................................................... 23 2 1 5.00 5 0 5 0 0 0 0 0 0 0 0
...............................................................................................TCTCACAGTGATTTTCCTTTATA...................................................... 23 1 1 5.00 5 2 3 0 0 0 0 0 0 0 0
......................................................AAAGGAACGGTCGTTGTGATAT................................................................................................ 22 1 1 5.00 5 1 4 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCATTTATA...................................................... 23 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTATATA...................................................... 23 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGCTGTGATA................................................................................................. 21 1 1 5.00 5 1 4 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTTGTGATATTT.............................................................................................. 24 2 1 5.00 5 2 3 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATAGTTGTGATA................................................................................................. 21 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGTGGTGATATG............................................................................................... 23 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0
.....................................................GAAAGGAACGATCGTTGTGATATG............................................................................................... 24 1 1 5.00 5 0 0 5 0 0 0 0 0 0 0
...................................................................................................ACAGTGATTTTCCTTTCT....................................................... 18 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0
......................................................AAAGTAACGATCGTTGTGATA................................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTAATA...................................................... 23 1 1 4.00 4 3 1 0 0 0 0 0 0 0 0
......................................................AAAGGAACGATCGATGAGATATG............................................................................................... 23 2 1 4.00 4 0 4 0 0 0 0 0 0 0 0
......................................................AAAGGAACCATCGTTGTGATAT................................................................................................ 22 1 1 4.00 4 3 1 0 0 0 0 0 0 0 0
...............................................................................................TGTCACAGTGCTTTTCCTTTATA...................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0
...............................................................................................TATCACAGTGATTTTCCTTTTTA...................................................... 23 1 1 4.00 4 2 2 0 0 0 0 0 0 0 0
...............................................................................................TAACACAGTGATTTTCCTTTAT....................................................... 22 1 1 4.00 4 1 3 0 0 0 0 0 0 0 0
...............................................................................................TGTCACAGTGCTTTTCCTTTAT....................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTAGGTAGGGTCACAGTAACTAATCAAGGGTTGAAGGATCCCCGGTATGCGATTTTCCTTGCTAGCAACACTATACGCAATTAAGTGGCAATGTATAGTGTCACTAAAAGGAAATATCGCGTACAGACGCGGGTGTCGGTGTGTACCCTTTGCTTTGCGAGTCGCCACCTC

****************************************..((((.((.((((((((((((.(((((((((((((((...((((.....)))))))))))))))))))))))))).))))).))))))....*************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM444067

head

 M040

female body
ACTAGGTAGGGTCACAGGAA........................................................................................................................................................ 20 3 4 0.25 1 1 0
.............................................................................................................................GGACGCGGGTGTCGGTGTA............................ 19 2 8 0.13 1 0 1
........................................................................................................................................................GCGTTGCGAGTCGCCAGCTA 20 3 9 0.11 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 3:12677190-12677361 - dps-mir-5 Known_mirbase ACATC----CATCCCAGTGTCATTGATT--A--GTT-------C-CCAACT-T-CCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAG--C-------------------------------------CACACA--T---GGGAAACGAA-AC--------------------GCT--CAGCGGTGG--------AG
droPer2 scaffold_2:8906311-8906482 + dpe-mir-5 Known_mirbase ACATC----CATCCCAGTGTCATTGATT--A--GCT-------C-CCAACT-T-CCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAG--C-------------------------------------CACACA--T---GGGAAACGAA-AC--------------------ACT--CAGCGATGG--------AG
droWil2 scf2_1100000004514:1651415-1651571 - dwi-mir-5 Known_mirbase AGTTT----------------------------CAT-------CGTCGT-T-TTTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATTC-ACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTT--CTGTCCAATA--T-------------------------------A-----TCAACA--------ATA-T--CCAGCA-AAG--------TTTTCA------AG---TGG--------TT
droVir3 scaffold_12875:4112440-4112621 + dvi-mir-5 Known_mirbase GTATA-------------------CTA-------------------TAT-A-T-AAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTA-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A----GCCCGTAAAGCAACACCACATACGATCTATATCCATGTCTATATAGACTTAAAACTATA-T----------CGCC-CAG--------TTATCTG--TTT-----------------A
droMoj3 scaffold_6496:20936408-20936584 - dmo-mir-5 Known_mirbase AAAAGTTTTTATGAAAGTTCAAAATGCA------AA-------C-TCGA-----TGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATCG-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A----GTCCCCCAGAC-------------------------------------TACA-A--T---ATGAATGTGA-AT--------------------ATT--TATAAGTGTATATATATTT
droGri2 scaffold_5621:3101-3240 + dgr-mir-5-2 Known_mirbase ATATA----TGTGTTAAA-------------G-------------TCG-------TTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----T--CTGCCCAAAA--C-------------------------------------TCAACT--A-------------------------------------AC--CAGTGTTGA--------AT
droAna3 scaffold_13266:9731630-9731798 + dan-mir-5 Known_mirbase TT--C---------AAATGTGACTATTCGAAAAAAA----ATGT-AAAATA-T-TCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGC----AG-TTGTCCAAAA--T-------------------------------------GCATCA--A---AAATAA---C---------------------GAGTT--AGGTGACAG--------GA
droBip1 scf7180000396427:874576-874752 + TATT-----TATGAAAATTTAAAAAATT--A--AATAAAAAAGT-GAAATA-T-CCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CA-TTGTCCAAAA--T-------------------------------------TCATCA--G---AGAT----------C-GAG--------TTAGTGA--CTTGA---AGG--------AG
droKik1 scf7180000302679:89044-89215 - GGATA----TGTCCT---------AAACCAAGTGAT----AT-C-TCAA-GCT-AACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-TTCC--CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----TC-AAGTCCAAGA--T-------------------------------------TCAACG--A---TTGA-----T------CAGTTCTAAGGTTC---TAT--GAGC---AA--------GG
droFic1 scf7180000454039:847744-847912 - CAATA-------------------AAGTTTAGTGAT-------TCCTAA-A-G-TACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTTA----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CG-TTGTCCAAAG--C-------------------------------------TCATCA--A---AGGAAAAAAC-ATAC------TTAAAGTTACAATTT--TAGT---GA--------TG
droEle1 scf7180000491201:2013679-2013837 - G--------------------------TTGAGTGAA-------CCCCGC-T-T-ACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----TTAACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAAAA--C-------------------------------------TCATCG--A--TGGGAAATACA-ATCCAAAA--------A---CAGTT--CTGTGCC----------GA
droRho1 scf7180000780066:73917-74075 + A-------------------------GTTGAGTGAT-------CCCTAC-A-T-TTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAATA--C-------------------------------------TCATCG--A---GGGAAATAAG-ATTCGAAA--------TTATCAGTT--C-----TGT--------GC
droBia1 scf7180000302143:3059504-3059671 - A--TC-------------------AATTTGAGTGAT-------CCCCAC-G-T-ATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----ATGAAGCCCAAAG--C-------------------------------------TCATCA--A---GGGAAATACC-ATCCGAAA--------TTACCTGTC--CAATGCT-G--------AA
droTak1 scf7180000415384:84298-84462 + CAAGC---------CAGTGAATT-AAGTTGAGTGAT-------CCCAGC-A-T-AACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CTTAAGCCCCAAA--A-------------------------------------ACATCA--A---GGGATATACT-AT-------------------------TAACCAAGT--------AA
droEug1 scf7180000409474:2397091-2397250 + AAGCC-------------------AAGTTAAGTGTT-------ACCAAA-A-C-TACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTC-TTTT----GTTACATATCACAGTGATTTTCCTTTGTAACGCATGT----CTAATGCCCACTA--T-------------------------------------TCATCA--A---GGTTATTAAA--CT---------------AAT-ACT--CAGTGCC----------AA
dm3 chr2R:15548614-15548769 - dme-mir-5 Known_mirbase AATT--------------------ATGTTAAGTGAT-------CCCCAA-A-T-TCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTTC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAA--C-------------------------------------TCATCA--A---GGAAAATGAA-AGTCAAAG--------TTG----------------G--------CA
droSim2 2r:16195883-16196034 - dsi-mir-5 Known_mirbase G--------------------------TTAAGTTAT-------CACCAA-A-T-TCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC-----CAACATATCACAGTGATTTTCCTTTATATCGCATGT----TAAAAGTCCACAA--T-------------------------------------TCATCA--A---GGAAAATGAA-AGCC-AAG--------TTGGCAG--CTT------------------
droSec2 scaffold_1:13063334-13063492 - dse-mir-5 Known_mirbase G--------------------------TTAAGTGAT-------CCCCAA-A-T-TCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC----CGAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAA--T-------------------------------------TCATCA--A---GGAAAATTA--AGCC-AAG--------TTGGCAG--CTTAC---TAA--------AC
droYak3 2R:13624021-13624176 + dya-mir-5 Known_mirbase AAATC-------------------GAGTTAAGTGTT-------CCCCCA-A-T-TTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----ACAAAGTCCACAA--C-------------------------------------TCATCA--A---GGGAAATGAA-AGCCAAAG--------TCG-------------------------GC
droEre2 scaffold_4845:9748850-9749021 - der-mir-5 Known_mirbase AAATC-------------------CAGTTAAGTGAT-------CCCCTA-A-T-TTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----AAAAAGTCCAAAA--C-------------------------------------TCATCA--A--TGGGAAATGAA-AGCCAAAG--------TTGCCAG--CTTAC---TTA-----GCTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACATC----CATCCCAGTGTCATTGATT--A--GTT-------C-CCAACT-T-CCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAG--C-------------------------------------CACACA--T---GGGAAACGAA-AC--------------------GCT--CAGCGGTGG--------AGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................23120861.00208612264210780287312423808
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................22111323.0011323041978584304100010
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................23110758.0010758041884614187200030
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2217060.00706017084499201796050238
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2111461.0014610928840454000292
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................221783.00783055589113800000
...................................................................................................................TATCACAGTGATTTTCCTTTAC.......................................................................................................................................221780.00780007770300000
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................211762.00762041524019600001
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................221640.00640016342300000
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................201598.005982262740265170149
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................241570.0057008938319500020
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................221268.002680236250300040
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................241260.0026001615808500010
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................231224.0022411012318800010
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................211202.0020201415313200020
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................241139.001390012201700000
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................241113.001130177002500010
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................231107.00107018001801070
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................21182.008207650100000
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................22178.0078024303300000
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................20164.006400640000000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20160.006002805000000
....................................................................................................................ATCACAGTGATTTTCCTTTAC.......................................................................................................................................21160.006000590100000
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................21159.0059054101300000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................19142.0042022101300033
....................................................T-CCTAGGGGCCATACGCTA........................................................................................................................................................................................................19140.004004403200000
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................18138.003800203600000
...................................................................................................................TATCACAGTGATTTTCCTTTATAC.....................................................................................................................................24137.003700370000000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................23136.0036002101500000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................20135.0035041601500000
.....................................................................................................................TCACAGTGATTTTCCTTTATAA.....................................................................................................................................22131.0031021701200000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................21130.003002370000000
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................23129.002902180900000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................23128.002803170800000
......................................................................TAAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................23126.0026021101300000
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................19126.002600402200000
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................24124.0024021101100000
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................23121.002100180300000
....................................................................................................................ATCACAGTGATTTTCCTTTA........................................................................................................................................20117.001704130000000
...................................................................................................................TATCACAGTGATTTTCCTTTATC......................................................................................................................................23115.001501101300000
..................................................T-T-CCTAGGGGCCATACGCTA........................................................................................................................................................................................................20115.001500101400000
.........................................................................AAGGAACGATCGTTGTGATA...................................................................................................................................................................................20114.001401130000000
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25114.00140040800020
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................22112.00120150300030
.........................................................................AAGGAACGATCGTTGTGATATGT................................................................................................................................................................................23111.00110920000000
...........................................................................GGAACGATCGTTGTGATATG.................................................................................................................................................................................20110.00100820000000
......................................................................TAAAAGGAACGATCGTTGTGAC....................................................................................................................................................................................22110.001000100000000
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................21110.00100160300000
.......................................................................AAAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2319.0090450000000
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................1919.0090070200000
...................................................................................................................TATCACAGTGATTTTCCTTTATAAA....................................................................................................................................2519.0090270000000
.....................................................................................................................TCACAGTGATTTTCCTTTATAGC....................................................................................................................................2318.0080050300000
...................................................................................................................TATCACAGTGATTTTCCT...........................................................................................................................................1818.0080030500000
.............................................................................................TGCGTTA-ATTC-ACCGTTACATA...........................................................................................................................................................2217.0070030400000
........................................................................................................................CAGTGATTTTCCTTTATA......................................................................................................................................1817.0070060100000
......................................................................................................................CACAGTGATTTTCCTTTAT.......................................................................................................................................1917.0070300400000
...................................................................................................................TATCACAGTGATTTTCCTTTATG......................................................................................................................................2317.0070050200000
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................1816.0060110400000
..........................................................................AGGAACGATCGTTGTGATAT..................................................................................................................................................................................2016.0060420000000
...................................................................................................................TATCACAGTGATTTTCCTTTAA.......................................................................................................................................2216.0060040200000
......................................................................................................................CACAGTGATTTTCCTTTATA......................................................................................................................................2016.0060050100000
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................2115.0050040100000
........................................................................AAAGGAACGATCGTTGTGATATGTC...............................................................................................................................................................................2515.0050120100010
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................2415.0050140000000
........................................................................AAAGGAACGATCGTTGTGATATTT................................................................................................................................................................................2415.0050020300000
droPer2
ACATC----CATCCCAGTGTCATTGATT--A--GCT-------C-CCAACT-T-CCTAGGGGCCATACGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATTC-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GCGCCCACAG--C-------------------------------------CACACA--T---GGGAAACGAA-AC--------------------ACT--CAGCGATGG--------AGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2217491.00749169693540826611
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................2316462.006462464568164528517
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2116180.0061806099371133
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2013284.00328431951613222
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................221721.007212247648121
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................241371.00371347418020
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................231353.00353641306000
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................221164.0016416003010
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................241161.0016115506000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................191125.0012511608001
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................22170.00706811000
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................20167.00676700000
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................24163.00636300000
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................23158.005842013012
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................23151.00515001000
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................21146.00463340000
......................................................................TAAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................23142.00423704010
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................24139.00393602010
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................22127.00270522000
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................22127.00272142000
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................21124.00242400000
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................22123.00232300000
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................23121.00211505010
........................................................................AAAGGAACGATCGTTGTGG.....................................................................................................................................................................................19120.00202000000
........................................................................AAAGGAACGATCGTTGTGATAG..................................................................................................................................................................................22120.00202000000
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21116.0016448000
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25116.00161501000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20115.00150015000
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................24111.0011037010
........................................................................AAAGGAACGATCGTTGTGAG....................................................................................................................................................................................20111.00111100000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................23110.0010901000
..........................................................................AGGAACGATCGTTGTGATAT..................................................................................................................................................................................2019.009900000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................2119.009801000
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................1819.009009000
............................................................................GAACGATCGTTGTGATAT..................................................................................................................................................................................1819.009900000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................2018.008026000
..........................................................................AGGAACGATCGTTGTGAT....................................................................................................................................................................................1818.008800000
...........................................................................GGAACGATCGTTGTGATATG.................................................................................................................................................................................2018.008800000
....................................................T-CCTAGGGGCCATACGCTA........................................................................................................................................................................................................1917.007007000
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2116.006330000
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................1916.006006000
.........................................................................AAGGAACGATCGTTGTGATA...................................................................................................................................................................................2016.006600000
.......................................................................AAAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2316.006501000
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................1815.005410000
......................................................................TAAAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................2415.005500000
.......................................................................AAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2115.005500000
...........................................................................GGAACGATCGTTGTGATAT..................................................................................................................................................................................1914.004400000
.......................................................................AAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2214.004301000
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................2113.003200001
..........................................................................AGGAACGATCGTTGTGATA...................................................................................................................................................................................1913.003300000
......................................................................TAAAAGGAACGATCGTTGTGA.....................................................................................................................................................................................2113.003201000
........................................................................AAAGGAACGATCGTTGTGATATAA................................................................................................................................................................................2413.003300000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................2312.002002000
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................1912.002002000
........................................................................AAAGGAACGATCGTTGTGATATGAAA..............................................................................................................................................................................2612.002200000
.........................................................................AAGGAACGATCGTTGTGATATGG................................................................................................................................................................................2312.002200000
.....................................................................................................................TCACAGTGATTTTCCTTTATAT.....................................................................................................................................2212.002002000
...........................................................................GGAACGATCGTTGTGATA...................................................................................................................................................................................1812.002200000
...................................................................................................................TATCACAGTGATTTTCCTTTATAG.....................................................................................................................................2412.002011000
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................2312.002011000
..........................................................................AGGAACGATCGTTGTGATATC.................................................................................................................................................................................2112.002200000
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................2412.002011000
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................2112.002002000
........................................................................AAAGGAACGATCGTTGTGATATGAT...............................................................................................................................................................................2512.002200000
........................................................................AAAGGAACGATCGTTGTGATACT.................................................................................................................................................................................2312.002200000
.........................................................................AAGGAACGATCGTTGTGAT....................................................................................................................................................................................1912.002200000
....................................................................................................................ATCACAGTGATTTTCCTTT.........................................................................................................................................1911.001001000
........................................................................AAAGGAACGATCGTTGTGATC...................................................................................................................................................................................2111.001100000
droWil2
AGTTT----------------------------CAT-------CGTCGT-T-TTTTTCTGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTAGATTC-ACCGTTATATATCACAGTGATTTTCCTTTATAGCGCATGCATGTT--CTGTCCAATA--T-------------------------------A-----TCAACA--------ATA-T--CCAGCA-AAG--------TTTTCA------AG---TGG--------TTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................23151810.005181038332351336101
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................22123023.002302356158722698104
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................22111546.0011546019601130842
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................2314116.00411601150399110
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2112328.00232841100226413
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2011803.0018038868166536
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................2111381.001381030013465
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................221408.0040801603911
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................231351.003511013490
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................241283.0028301002730
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................241276.002761602690
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................241275.002750502700
.....................................................TTTTCTGGGCCATTCGCTA........................................................................................................................................................................................................191181.001810401770
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................201140.001400101390
...................................................................................................................TATCACAGTGATTTTCCT...........................................................................................................................................181117.001170001161
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................23182.0082110800
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................22179.00790370420
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21175.0075020721
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................23162.0062010610
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................19149.0049100480
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................24148.0048000480
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................22147.0047001460
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................18146.0046010450
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................24144.0044010430
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................21131.00310150151
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................22130.0030000300
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................23127.0027000270
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25126.0026000260
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................18124.0024000240
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................20122.0022010210
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................21120.0020020180
...................................................................................................................TATCACAGTGATTTTCCTTTATAAA....................................................................................................................................25119.0019000190
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................22114.0014000140
...................................................................................................................TATCACAGTGATTTTCCTTTAC.......................................................................................................................................22114.0014000140
.....................................................................................................................TCACAGTGATTTTCCTTTATAA.....................................................................................................................................22113.0013010120
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................23113.0013000130
....................................................TTTTTCTGGGCCATTCGCTA........................................................................................................................................................................................................20113.0013000130
........................................................................AAAGGAACGATCGTTGTGATATGAA...............................................................................................................................................................................25112.0012000120
.....................................................................................................................TCACAGTGATTTTCCTTTATAT.....................................................................................................................................22112.0012000120
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................23111.0011000110
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................21110.001005050
...................................................................................................................TATCACAGTGATTTTCCTTTT........................................................................................................................................21110.0010000100
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................1919.00900090
....................................................................................................................ATCACAGTGATTTTCCTTT.........................................................................................................................................1918.00800080
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................1917.00700070
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................2416.00600060
...............................................................................................CGTTAGATTC-ACCGTTATA.............................................................................................................................................................1916.00600060
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................2116.00600060
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................1815.00501040
...................................................................................................................TATCACAGTGATTTTCCTTTATAG.....................................................................................................................................2415.00500050
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................2015.00520021
........................................................................................................................CAGTGATTTTCCTTTATA......................................................................................................................................1815.00500050
...................................................................................................................TATCACAGTGATTTTCCTTTAA.......................................................................................................................................2215.00502030
...................................................................................................................TATCACAGTGATTTTCCTTAT........................................................................................................................................2115.00501040
....................................................................................................................ATCACAGTGATTTTCCTTTATAT.....................................................................................................................................2314.00400040
....................................................................................................................ATCACAGTGATTTTCCTTTA........................................................................................................................................2014.00400040
........................................................................AAAGGAACGATCGTTGTGATATGTA...............................................................................................................................................................................2514.00400040
........................................................................AAAGGAACGATCGTTGTGATATGTC...............................................................................................................................................................................2514.00400040
......................................................................TAAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2313.00300030
........................................................................AAAGGAACGATCGTTGTT......................................................................................................................................................................................1813.00300030
........................................................................AAAGGAACGATCGTTGTGT.....................................................................................................................................................................................1913.00300030
..................................................T-TTTTTCTGGGCCATTCGCTA........................................................................................................................................................................................................2113.00300030
...................................................................................................................TATCACAGTGATTTTCCTTTATG......................................................................................................................................2313.00300030
........................................................................AAAGGAACGATCGTTGTGATTG..................................................................................................................................................................................2213.00300030
........................................................................AAAGGAACGATCGTTGTGATC...................................................................................................................................................................................2113.00310020
...........................................................................GGAACGATCGTTGTGATATG.................................................................................................................................................................................2012.00211000
........................................................................AAAGGAACGATCGTTGTGATATAA................................................................................................................................................................................2412.00200020
droVir3
GTATA-------------------CTA-------------------TAT-A-T-AAATTGGGTCATGCTCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTA-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A----GCCCGTAAAGCAACACCACATACGATCTATATCCATGTCTATATAGACTTAAAACTATA-T----------CGCC-CAG--------TTATCTG--TTT-----------------ASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................23166177.006617729701213801360121122029101040251241043292641675411536188215704310102704298290939452967244945032170358719711171144510649120298932204764024104312426155914761861585499280327
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................22111567.0011567325653522350012011143104024643023141196041071963021921134131971283362382664222975734023183462591101269500211101010312332432512529816216389128
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2116493.00649323341737010000000400001000100110001061122017220016374252943973263004942765173462302811922109077120000302413273242313141343953
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2014656.0046561135214900030620011000001000000010010002220152129282498819116320833136820730624417132183466130001615190011121748396671
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................2312561.00256100592200000000070000000020010011118401122474072520000224820262030162912121160002220900001532000000015111231
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................2212463.00246302910290000000001732551141140103115442781871478800001148172013292145241726170001212341000151013340000003553421011
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................2411002.0010021102540000000001000000000000000000004111450020019123335376144805134383600012218000004911000220141118810
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................231460.00460000113000000000100000000000000000000137200000810101711310237686000121660000041400000043200
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................221295.00295000100000000000000000000000000000000000000006216710251432281525220007630000000000000001102
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................221282.00282000279000000000000000000000000000000010000000000000000000000020000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................241257.00257200590000000000000000001000000000201361000005110106183141248800024600000541300000075946
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................211173.001730018600000000011000000000000000001062479000001001102124100004120000000100000041110
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................241164.001640001700000000000000100100000000001101725291600000301111220111000370000020500000007513
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................221129.00129000460000000010000000000000010000305111719000002000110100000000140000000500000020000
...................................................................................................................TATCACAGTGATTTTCCTTTATC......................................................................................................................................231129.00129000730000000000000000000000000100000000000002000033732430002530000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................231127.0012701032010000001000000000000000000000112200000516455311412200019160100000100000000000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................211105.001050001200000000000000000000000000000000140001414106246173140000230000000800000062211
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21197.0097000360000000000000000001000000000102132000006550320344110002150000000000000000000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................19178.007802070000000000000000000000001000001100000104662152335431001340000010200000000000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................23177.0077020130000000000000000000000000000201252000002252411112211000730200001300000000000
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................24175.007500057000000000100000000000000000000100300000001000002110000170000000000000000000
...................................................................................................................TATCACAGTGATTTTCCTTTAC.......................................................................................................................................22157.005700056000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................AAAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................24145.004500000000000000000000000000000000000000000003508113152203000200000000000000000000
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................22140.004000015000000000100000000000000000000233200000002102200200000110000001100000001000
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................20138.003812027000000000000000000000000000000000000000000001102001010200000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25134.00340003000000000000000000000000000000002000000012233321130000420000000000000011000
......................................................................TAAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................23131.00310002000000000000000000000000000000010000000202210130210000110000000800000021100
........................................................................AAAGGAACGATCGTTGTGATATGTC...............................................................................................................................................................................25128.00280005000000000000000000000000000001000000000101002223110000360000000000000000000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20125.002500011000000000000000001100010000000102300000000000000000000050000000000000000000
........................................................................AAAGGAACGATCGTTGTGATC...................................................................................................................................................................................21122.00220104000000000000000000000000000000000000000100220202001000520000000000000000000
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................21117.00170005000000000000000000000000000020021000000000000000110000000000000300000020000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................20116.00160016000000000000000000000000010010001100000000000000000000010000001000000001110
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................24116.00160001000000000000000000000000000010042300000001001010000000010000000000000000100
...................................................................................................................TATCACAGTGATTTTCCTTTATAC.....................................................................................................................................24113.00130006000000000000000000000000000000000000000000000111000000400000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATGAT...............................................................................................................................................................................25113.00130000000000000000000000000000000000000000000001001121210000200000000000000100100
........................................................................AAAGGAACGATCGTTGTGATATGTCC..............................................................................................................................................................................26112.00120000000000000000000000000000000000000000000000200002011000600000000000000000000
...................................................................................................................TATCACAGTGATTTTCCTTTATAAA....................................................................................................................................25112.00120003000000000000000000000000000000121100000000000000001000000000001000000002000
...................................................................................................................TATCACAGTGATTTTCCTTTATCC.....................................................................................................................................24112.00120016000000000000000000000000000000000000000000000001100000300000000000000000000
........................................................................AAAGGAACGATCGTTGTGG.....................................................................................................................................................................................19111.00110100000000000000000000000000000000000000000101100002010000400000000000000000000
....................................................................................................................ATCACAGTGATTTTCCTTTAC.......................................................................................................................................21111.00110009000000000000000000000000000000101000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................23110.00100003000000000000000000000000000000000000000011001110000000000000000000000000101
........................................................................AAAGGAACGATCGTTG........................................................................................................................................................................................16110.00100000000000000000000000000000000000000000000012011000011000300000000000000000000
..........................................................................AGGAACGATCGTTGTGATA...................................................................................................................................................................................19110.00100000000000000000000000000000000000000000000110100000103000010000010000000010000
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................19110.00100000000000000000000000000000000000013100000001000201100000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................2219.0090001000000000000000000000000000000000000000000100001000000310000000000000011000
....................................................T-AAATTGGGTCATGCTCTA........................................................................................................................................................................................................1919.0090000000000000000000000000000000000000000001120001000000000000000000100000020010
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................2118.0080001000000000000000000000000000000000000000001010010000000310000000000000000000
.......................................................................AAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000001041100000100000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATGAA...............................................................................................................................................................................2518.0080000000000000000000000000000000000001000000000001010000000020000000000000011100
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................1918.0080002000000000000000000000000000000003100000000000000000000020000000000000000000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................2318.0080000000000000100000000000000000000002200000010100000000000000000000000000001000
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................1818.0080003010000000000000000000000000000000100000000000000000000020000000100000000000
..........................................................................AGGAACGATCGTTGTGAT....................................................................................................................................................................................1817.0070000000000000000000000000000000000100000001011001000000000000000000000000000101
.......................................................................AAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000001001112100000000000000000000000000
.....................................................................................................................TCACAGTGATTTTCCTTTATAA.....................................................................................................................................2217.0070003000000000000000000000000000000000000000000000000000000010000000100000011000
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................2417.0070004000000000000000000000000000000000000000000000000011000100000000000000000000
...............................................................................................CGTTC-ATTA-ACCGTTACA.............................................................................................................................................................1816.0060000000000000000000000000000000010111000000000000000000000020000000000000000000
.......................................................................AAAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2316.0060000000000000000000000000000000000000000000001201010001000000000000000000000000
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................2316.0060004000000000000000000000000000000000000000001000000000000100000000000000000000
....................................................................................................................ATCACAGTGATTTTCCTTTATC......................................................................................................................................2216.0060006000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................1816.0060000000000000100000000000000000000110000000000001000000000110000000000000000000
............................................................................GAACGATCGTTGTGATATG.................................................................................................................................................................................1915.0050000000000000000000000000000000000001000000000000000000000100000000000000011010
........................................................................AAAGGAACGATCGTTGTGATATTT................................................................................................................................................................................2415.0050002000000000000000000000000000000000000000000000000000000120000000000000000000
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................2115.0050002000000000000000000000000000000000000000000001001000000000000000000000010000
..........................................................................AGGAACGATCGTTGTGATATGT................................................................................................................................................................................2215.0050003000000000000000000000000000000000000000000010010000000000000000000000000000
....................................................................................................................ATCACAGTGATTTTCCTTTA........................................................................................................................................2015.0050000000000000000000000000000000000010100000010001000010000000000000000000000000
...........................................................................GGAACGATCGTTGTGATATG.................................................................................................................................................................................2014.0040001000000000000000000000000000000000000000110000000000000000000000000000010000
......................................................................................................................CACAGTGATTTTCCTTTATA......................................................................................................................................2014.0040002000000000000000000000000000000011000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATGTTC..............................................................................................................................................................................2614.0040002000000000000000000000000000000000000000000000000000000200000000000000000000
droMoj3
AAAAGTTTTTATGAAAGTTCAAAATGCA------AA-------C-TCGA-----TGAATGGGCCATGCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-ATCG-ACCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----A----GTCCCCCAGAC-------------------------------------TACA-A--T---ATGAATGTGA-AT--------------------ATT--TATAAGTGTATATATATTTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................231103385.00103385208896689444411
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................22163878.006387823480521590461
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................22162994.006299462770316020410
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................23157007.00570076209100549100
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2117688.00768803760173110
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................2115487.00548712900051960
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................2214838.00483801060047320
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................2214143.004143030041400
...................................................................................................................TATCACAGTGATTTTCCTTTAC.......................................................................................................................................2213555.0035550100035450
...................................................................................................................TATCACAGTGATTTTCCTTTATC......................................................................................................................................2311942.0019422240019160
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................2411743.0017430810016620
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2011261.00126122270210228
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................2111095.0010951300010640
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................2311093.0010930811010110
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................2411051.0010511108009420
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................241829.00829097007284
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................241578.00578038105390
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................231468.00468029004390
....................................................................................................................ATCACAGTGATTTTCCTTTAC.......................................................................................................................................211292.0029200002920
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................211260.00260011002490
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................221256.0025614002510
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................241188.00188027001610
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................231177.0017705001720
...................................................................................................................TATCACAGTGATTTTCCTTTATAC.....................................................................................................................................241173.0017301001720
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................201173.00173016001570
....................................................................................................................ATCACAGTGATTTTCCTTTATC......................................................................................................................................221160.0016010001590
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................211142.0014200001420
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................181132.0013205700750
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................231130.00130013001170
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................201130.0013000001300
........................................................................AAAGGAACGATCGTTGTGATATGTC...............................................................................................................................................................................251113.0011313200800
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................231110.0011005001050
......................................................................................................................CACAGTGATTTTCCTTTAT.......................................................................................................................................191108.0010801001070
......................................................................................................................CACAGTGATTTTCCTTTATA......................................................................................................................................201103.0010300001030
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................201101.0010134000580
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................19195.009502700680
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................19181.00810210780
........................................................................................................................CAGTGATTTTCCTTTATA......................................................................................................................................18179.00790000790
....................................................................................................................ATCACAGTGATTTTCCTTTA........................................................................................................................................20179.00790300760
...................................................................................................................TATCACAGTGATTTTCCTTTATG......................................................................................................................................23153.00530100520
.....................................................................................................................TCACAGTGATTTTCCTTTATAA.....................................................................................................................................22152.00520300490
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25147.004702600210
...................................................................................................................TATCACAGTGATTTTCCTTTATAAA....................................................................................................................................25145.00450300420
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................22140.00400100390
...................................................................................................................TATCACAGTGATTTTCCTTTATCC.....................................................................................................................................24136.00360000360
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................21133.00331000320
....................................................................................................................ATCACAGTGATTTTCCTTTATT......................................................................................................................................22130.00300000300
....................................................................................................................ATCACAGTGATTTTCCTTTATAC.....................................................................................................................................23129.00290000290
....................................................................................................................ATCACAGTGATTTTCCTTTATAT.....................................................................................................................................23128.00280300250
...................................................................................................................TATCACAGTGATTTTCCTTTAA.......................................................................................................................................22128.00280000280
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................23127.00270100260
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................24125.00250100240
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................19124.00240100230
.........................................................................AAGGAACGATCGTTGTGATA...................................................................................................................................................................................20121.00210000210
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................21121.00211100190
................................................A-----TGAATGGGCCATGCGCTA........................................................................................................................................................................................................19121.00210500160
droGri2
ATATA----TGTGTTAAA-------------G-------------TCG-------TTATGGGTCACTCGCTAAAAGGAACGATCGTTGTGATATGCGTTC-ATTAAATCGTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----T--CTGCCCAAAA--C-------------------------------------TCAACT--A-------------------------------------AC--CAGTGTTGA--------ATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................2325.001055
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................2222.00440
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2221.50321
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................2121.50330
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2020.50101
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................2120.50101
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................2420.50101
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................2320.50110
droAna3
TT--C---------AAATGTGACTATTCGAAAAAAA----ATGT-AAAATA-T-TCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGC----AG-TTGTCCAAAA--T-------------------------------------GCATCA--A---AAATAA---C---------------------GAGTT--AGGTGACAG--------GASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................2313433.0034331402558681212013
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................2211891.001891331648199128
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2211454.00145431114125271013
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................231721.007214059387001
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................211243.00243221720031
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................201154.001542105264116
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................211147.00147512813001
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................221117.0011701170000
...................................................................................................................TATCACAGTGATTTTCCTTTAC.......................................................................................................................................221110.0011001100000
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21164.00640613000
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................23164.006412139003
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................24164.00642556100
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................22154.00546435000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20123.0023299003
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................24123.00230194000
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................24119.00190190000
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................24117.00170133010
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................20116.00160160000
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................22113.00131030000
....................................................................................................................ATCACAGTGATTTTCCTTTAC.......................................................................................................................................21110.00100100000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................1919.009072000
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................2318.008071000
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................2517.007043000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................2117.007160000
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2117.007430000
....................................................T-TCTAAGGACCATTCGCTA........................................................................................................................................................................................................1916.006051000
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................2316.006060000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................2016.006060000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................2315.005041000
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................1815.005031001
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................2115.005230000
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................1914.004031000
...................................................................................................................TATCACAGTGATTTTCCTTTATC......................................................................................................................................2314.004040000
...................................................................................................................TATCACAGTGATTTTCCTTTAA.......................................................................................................................................2214.004040000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................2314.004040000
......................................................................................................................CACAGTGATTTTCCTTTAT.......................................................................................................................................1914.004040000
...................................................................................................................TATCACAGTGATTTTCCTTC.........................................................................................................................................2013.003030000
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................1913.003012000
..........................................................................AGGAACGATCGTTGTGATAT..................................................................................................................................................................................2013.003030000
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................2313.003021000
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................2413.003030000
...................................................................................................................TATCACAGTGATTTTCCTTTATG......................................................................................................................................2312.002020000
......................................................................................................................CACAGTGATTTTCCTTTATA......................................................................................................................................2012.002020000
...................................................................................................................TATCACAGTGATTTTCCTTTATAC.....................................................................................................................................2412.002020000
........................................................................AAAGGAACGATCGTTGTGATATGTTA..............................................................................................................................................................................2612.002002000
....................................................................................................................ATCACAGTGATTTTCCTTTA........................................................................................................................................2012.002011000
........................................................................AAAGGAACGATCGTTGTGATATTA................................................................................................................................................................................2412.002002000
........................................................................AAAGGAACGATCGTTGTGATAG..................................................................................................................................................................................2212.002002000
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................2212.002020000
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................1812.002002000
........................................................................AAAGGAACGATCGTTGTGATATGAT...............................................................................................................................................................................2512.002000002
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2212.002011000
....................................................................................................................ATCACAGTGATTTTCCTTT.........................................................................................................................................1912.002110000
.....................................................................................................................TCACAGTGATTTTCCTTTATAA.....................................................................................................................................2212.002020000
...................................................................................................................TATCACAGTGATTTTCCTTTGC.......................................................................................................................................2211.001010000
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................2111.001000100
....................................................................................................................ATCACAGTGATTTTCCTTTATATT....................................................................................................................................2411.001010000
.................................................TA-T-TCTAAGGACCATTCGCTA........................................................................................................................................................................................................2111.001010000
....................................................................................................................ATCACAGTGATTTTCCTTTATT......................................................................................................................................2211.001010000
...................................................................................................................TATCACAGTGATTTTCCTTTC........................................................................................................................................2111.001001000
droBip1
TATT-----TATGAAAATTTAAAAAATT--A--AATAAAAAAGT-GAAATA-T-CCTAAGGACCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-ATCC-CTCGTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CA-TTGTCCAAAA--T-------------------------------------TCATCA--G---AGAT----------C-GAG--------TTAGTGA--CTTGA---AGG--------AGSizeHit CountTotal NormTotal
No Reads
droKik1
GGATA----TGTCCT---------AAACCAAGTGAT----AT-C-TCAA-GCT-AACCAGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTT-TTCC--CCGTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----TC-AAGTCCAAGA--T-------------------------------------TCAACG--A---TTGA-----T------CAGTTCTAAGGTTC---TAT--GAGC---AA--------GGSizeHit CountTotal NormTotal
No Reads
droFic1
CAATA-------------------AAGTTTAGTGAT-------TCCTAA-A-G-TACACGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTTA----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CG-TTGTCCAAAG--C-------------------------------------TCATCA--A---AGGAAAAAAC-ATAC------TTAAAGTTACAATTT--TAGT---GA--------TGSizeHit CountTotal NormTotal
No Reads
droEle1
G--------------------------TTGAGTGAA-------CCCCGC-T-T-ACTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----TTAACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAAAA--C-------------------------------------TCATCG--A--TGGGAAATACA-ATCCAAAA--------A---CAGTT--CTGTGCC----------GASizeHit CountTotal NormTotal
No Reads
droRho1
A-------------------------GTTGAGTGAT-------CCCTAC-A-T-TTTCCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-ATCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCATGT----CT-GAGCCCAATA--C-------------------------------------TCATCG--A---GGGAAATAAG-ATTCGAAA--------TTATCAGTT--C-----TGT--------GCSizeHit CountTotal NormTotal
No Reads
droBia1
A--TC-------------------AATTTGAGTGAT-------CCCCAC-G-T-ATCTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAGCGCGTGC----ATGAAGCCCAAAG--C-------------------------------------TCATCA--A---GGGAAATACC-ATCCGAAA--------TTACCTGTC--CAATGCT-G--------AASizeHit CountTotal NormTotal
No Reads
droTak1
CAAGC---------CAGTGAATT-AAGTTGAGTGAT-------CCCAGC-A-T-AACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----GTTACATATCACAGTGATTTTCCTTTATAACGCATGT----CTTAAGCCCCAAA--A-------------------------------------ACATCA--A---GGGATATACT-AT-------------------------TAACCAAGT--------AASizeHit CountTotal NormTotal
No Reads
droEug1
AAGCC-------------------AAGTTAAGTGTT-------ACCAAA-A-C-TACTCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTC-TTTT----GTTACATATCACAGTGATTTTCCTTTGTAACGCATGT----CTAATGCCCACTA--T-------------------------------------TCATCA--A---GGTTATTAAA--CT---------------AAT-ACT--CAGTGCC----------AASizeHit CountTotal NormTotal
No Reads
dm3
AATT--------------------ATGTTAAGTGAT-------CCCCAA-A-T-TCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTTC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAA--C-------------------------------------TCATCA--A---GGAAAATGAA-AGTCAAAG--------TTG----------------G--------CASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................2311000024.0010000240000901821884576116301200000040800820100000160193341410313501291331312123283000000000000000000000000310002855254128050921826560333216124120292013211110140114164381100298013111308391201099320100000000317008361651676532916740257211326171960291844303132101170961026570110091106193161172122042757710201068411285361256823090001626134323717341362717439223715962172162713000002114310650822047323056732361729321051383712937514337201744291892317691515232238192625671914625156684134716100361322331910751721781201532184255710251163817812521113750724101643111010240
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................221136122.001361220000315486131818440100000000250023010000010260311018160215434010460270000000000000000000001533014815163157326372793224694121511632119385701311313013500015742061680032000110010000000003200394198921522265396804151118471132010120060021440111024110516225615002207317411000106980310415912522400036201017208122315523134361563139114534652283000044243866322250215214010055801140520547304643522243322164101277101371110118864342137322613504124215441183334523424716910822278146110136123681264828107316111660
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................23147228.004722800002052527178241000000000000001020051101390000000000000002110003000000000000000000010111123512521450726201220810411310400933859031820631091119548845030350003510000700000000000243658749103356300010000000000000000153809429130503015100010310001000000000000000000000510000396512120183961788150110000028718910000000006001021910000000000101001000301100001010146811741140030100001632101010000100002028381101100
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................22117174.00171740000207951181031110000000001000100000001900000002071000100100012000000000000000000431401898770160622711773267760316024722632111711038572041001334423502000011404066000000000010941389921014000000570000000000000153201620816012061152024005901020000000000000000000000001002880215082439626160214000054442602110021026101121400010000000411071402166900203212531649291040130000012420160200002010040910140212220
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................21113538.0013538000000440323900100000000020010000000010160100012301000100300000100000000000000000000100040613918776144002030021001153640052105000121400340000000000000010000000009445885112922130111100305100050010039011000110220001001330110000020013050730000001110102111012650463271019000090551702000000201000026100001211123112118062101421134334332573757329138011204122226418220414030080948370412150
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................20111581.0011581000000000200000000000000001000000086480000000108000002000000000000000000000000001100422016000001000100010000000000002200000000000000000001000000464144381012000032000000003001000202000010000040031012001000000114050500000100096623283512070121700150000146133002200011020301313020003000004000219041100523212213542011614113110024355361072085458714347211103225986731259440
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................2316896.006896000000052000000000000000000000000030001011102010000000000000000000000000000000000885123345641210001000100100000000230106009000000000000000000000000117836878104520011000000000010000010000000010000000121100010000000011003000000000002000100050382020000268811000000000000001110010000010202001020100001000011204318101201010020102020004010050100200780301000
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................2213934.003934000000844174000000000000000000000000400000000000000000000000000000000000000000000009124212142341940012040000013011000122300005940470000000030000000000000001754506012000000000000000000000613000101110000000000500000000002000000000000000000002309041090000000003619000000000000000150000000000000000000000100000000112302611000000000050000000000000000101060000100
....................................................T-TCATCGGGCCATTCGCTA........................................................................................................................................................................................................1912959.0029590000000000000000000000000000000000420000000000000000000000000000000000000000000000300132141239201000200200201010000044653004721158000000000000000000000000242209488136230000000000000000000000000000000100100000000000000001000000000000000000000000001010000000037220000001000000000100000000000000000000000000000001560200000000000000000000001000000000010000000
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................2112939.00293900000032014600000000000000000000000090000000000000000000001010000000000000000000000546151331425610001000340072310010062110068100420000000000000000000000001757108356100000000000000000000050210211101050000008000100000000000000000000000000011306237064000100005461000000000010000010000000001000001700030000000100057611000000020000000000001010000000000400000100
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................2312237.0022370000004840000000000000000000000000000000000010000000000000000000000000000000000001075047000000000000000020000000002003000000000000000000000000261771995681010000010000000000000001000000000000000010001000000000000000000001000000000004020000000037260000000000000000100000000000000024000101000000001135812100000210000000000001001010000000520000010
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................2411676.001676000000167000000000000000000000000010000000001000000000000000000000000000000000000371987851001000000002000000000000014107000000000010000000000000413252101000000000000000000000000000000000000000001000000001807000300000000000001010102604000000003935000000000000000010000000000000000014240201000000084033700000100000001021010110130000003060001000
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................2411627.001627000000058100000000000000000000000010000000000100000000000000000000000000000000000631168772000010000001001200000100011401000010000000000000000000732451602000000000000000001000000001100000100000020000000000008010200000000000100040314412810105000055450000100000000000200000000000100022001504001000101755235001001000100020100130200000002049120000000
.......................................................................AAAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................2411316.001316000020416974000000000000000000000000000000000000000000000000000000000000000000000004651111561757000000000400010040000617000502029000000000000000000000000073000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000027000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................2311250.0012500000001819544130000000000000000000000003000000000100000000000000000000000000000000000011348252630000000000000000000018600010101200100000000000000000000011768012000000000000000000000000000000000000000000001000000000000000000000000000000000030600000000191301001000000000000000000000000000030001010000000014204900001101000000023000000010000102210000000
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................2411108.001108000000041030100000000000000000000002000000000000010000000100000000000000000000000010658159104221000010010041100001018000427080000000000000000000000001248512410000000000000000000000000000000000000000000000000000000000200000000000000120703123500000000141100000000000000002000000000000000000001000000000003071000000000000000000000000000000000000000000
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................2211009.0010090000005361110000000000000000000000001000000000000000000000000000000000000000000000033838821022700000100000000000000870002610100000000000000000000000003442921700000000000000000000000000000000000000000000000000000000000000000000002000021019150000000010900000000001000000000000000000000000000000000000001421500000000000000000000000000000000130000000
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................241768.007680000000000000000000000000000000000400000000000000000000000000000000000000000000001705410000000000010000000000000200000000000000000000000000014567018000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000301600000000000000001000000000000000010000000000010004467300100000000000000000000000000000130100000
.......................................................................AAAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................231678.00678000000139520000000000000000000000000000000000000000000000000000000000000000000000026651105117130000000100011040000112000203027000000000000000000000000011000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000011000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................231647.0064700000001100000000000000000000000000000000000100000000000000000000000000000000000090861000000000000000000000000020000000000000000000000000003674772461000000000000000000000000000000000000000000000000000000000200000000000000000101020001000013700000000000000001000000000000001000000000000000003263900000000000000000000010001000000130000000
..................................................A-T-TCATCGGGCCATTCGCTA........................................................................................................................................................................................................201592.00592000010110000000000000000000000000024000000000000000000000000000000000000000000000031009000010000000000000000100000000000000000000000000000002891138321100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000220000000000000000000000000000000000000000000000000242000000000000000002000000000000000010000000
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................221531.0053100000011071000000000000000000000000020000000000000000010000000000000000000000000000441123161000001000001000100000000040040000000000000000000000001030252200001000000000010000000000000000010000000000000000000000000000000000010010110010010030000111400000000000000000000000000000000000100020100000002404000000000000000100000011000000000100000000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................191512.00512000000000000000000000000000000000021000000000010000000000000000000000000000000000006000000000000000000100000000000001000000000000000000000000313170050000000000000030000001000000000100000000100000000000000000000000000000000000030110000000261500000000000000000000000000000001010011000200010126810400100000000111010108000000000400120000000
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................211401.00401000000186400000000000000000000000020000000000000000000000000000000000000000000000138136468170000000000011020000023000203040000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000102014030000000010000000000000000000000000000000000000000000001000016300000000000000000000000000000000000000000
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................211354.003540000001313000000000000000000100000300000000000000000000000000000000000000000010004527263250000100000021000000004000231040000000010100000000000001083800000000000000000000000000100011100000001010000000000000000000000000000010040009021110100001013100000000000000010000010000000000000000000100100052800000000000040000100000000000000200000000
....................................................T-TCATCGGGCCATTCGCTAC.......................................................................................................................................................................................................201345.0034500000000000000000000000000000000003450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................181290.0029000000000000000000000000000000000000000000000100000000000000000000000000000000000010003000000000000000000000000000000000000000000001030000002721280220000000000000000000000000000000100000000000000000000000000000000000000000000000000000000191200000000000000000000000000001000000000000000000001243600000000000211000000000000001000101100000
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................211284.002840000000300000000000000000000000000000000000000000000000000000000000000000000000009131472260000000000000200000004000160013000000000000000000000000011700000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000020000000000000000000000000000000034000000000000000000000000000000000000000000
......................................................................TAAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................231237.00237000000011000000000000000000000000010000000000000000000000000000000000000000000000472081210000000000000000000000000110000000000000000000000000008910800000000000000000000000000000000000000000000000000000000000000000000000000000000030000000064000000000000000000000000000000000000000000000000084300000000000000000000000000000000000000000
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................181163.001630000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000131150000000000000000000000000000000000000000000000000000000050200000000000000000000000000000000650000000000000000000000000000000000000001000000000105900000000000000000000000000000000000000000
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................191154.001540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000129242300000000000000000000000100000000000000000000000000000000000000000000000000000001030000000032000000000000000010000000000000000000000000000000065100000000000000000000000000000000000000000
...................................................................................................................TATCACAGTGATTTTCCTTTATC......................................................................................................................................231151.00151000000000000000000000000000000000000000000000000000000000000000000000000000000000200340000000000000000000000000001010000000000000000000000000201100000000000000000000001000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000104200000000000000000000000000000000000000000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................211148.0014800000002000000000000000000000000000000000000000000000000000000000000000000000000048226121200000000000000000000020004004000000000000000000001000301020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000019500000000000000000000000000000000000000000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................201145.0014500000000110000000000000000000000004700000000030000010000000000000000000000000000004224000000000000000000000000001300010000000000020000000000112000000000000000000000000202000000000100000010000000000000000000000000000000090005040001000055001000005000000120000000010000000000000001010000012700000000000000000000000000000200000000010
............................................................................GAACGATCGTTGTGATATG.................................................................................................................................................................................191133.0013300000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000010000000000000000000000000006965000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000105000000000000000000000000000000001000000000000000077700000000000000000000000000000000000000000
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................221127.00127000000001000000000000000000000000000000000000000000000000000000000000000000000000407200000000000000000000000000210700000000000000000000000010220400000000000000000000000000000000000000010000000000000000000000000000000000100000000000000860000000000000000000000000000000000000000000000000312700000000000000000000000010000001540000000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................231125.001250000000102000000000000000000000000100000000000000000000000000000000000000000000001772613700000000000000000000000001008000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000005080000000011000000000000000000000000000000000000000000000000025000000000000000000000000000000000000000000
....................................................T-TCATCGGGCCATTCGCTACTG.....................................................................................................................................................................................................221117.0011700000000000000000000000000000000001170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................221108.00108000000522109000000000000000000000000000000000000000000000000000000000000000000000009143100000000000001010000010000100000000000000000000000000010101000000000000000000000000000000000000000000000000000000000000000001000000000002012001000033000000000000000000000000000000000000000000000000016500000001000000000000010000000100000000000
..................................................................................................................ATATCACAGTGATTTTCCTTTATA......................................................................................................................................241107.001070000000010000000000000000000000000000000000000000000000000000000000000000000000003041511200000000000000000000100001001000000000000000000000000111000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000037000000000000000000000000000000000000000000
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................181100.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000317317400000000000000000000000000000010000000000000000000000000000000000000000000001010300000000470000000000000000000000000000100000000000000000000101000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATATGATC..............................................................................................................................................................................26194.009400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004846000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................AAAGGAACGATCGTTGTGATC...................................................................................................................................................................................21176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000342000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000120000000000000000000000000000000000000000000000000362000000000000000000000000000000000000000000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................20176.0076000000001000000000000000000000000000000000000000000000000000000000000000000000000210721301000000000000000000020001010000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000112000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
droSim2
G--------------------------TTAAGTTAT-------CACCAA-A-T-TCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC-----CAACATATCACAGTGATTTTCCTTTATATCGCATGT----TAAAAGTCCACAA--T-------------------------------------TCATCA--A---GGAAAATGAA-AGCC-AAG--------TTGGCAG--CTT------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................231153742.001537429463548381180010874145074440006315824125397001
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................221122204.00122204876453472531332012331001341923219911406957320
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................21136713.00367131053228658501132193673382332396103004
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................20110151.0010151198418774301874443142318336002
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................2314563.00456300714317418150214390145100000
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................2213927.00392700754117307186970237705030
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................2411342.001342108801002219723202403000
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................2411338.001338139561002013221402603000
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................221927.0092700340240327463012400000
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................221851.00851118030000021190204000
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................211808.0080800861300252228030910000
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................231712.007120032600033152126040062000
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................241347.003470134500000010000000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................191321.0032181209005303137311013000
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................201278.002786027100000000100000
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................231247.00247009900000626911600000
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................241222.00222001130003155390902000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................231218.0021800960002050490849000
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................221217.00217001620003022240600000
......................................................................TAAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................231182.0018200690001149620000000
........................................................................AAAGGAACGATCGTTGTGATAG..................................................................................................................................................................................221180.001801017600000010101000
....................................................T-TCATCGGGCCATTCGCTA........................................................................................................................................................................................................191159.001590114900010010700000
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................241152.00152001010020344006500000
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................221121.00121128100010101101113000
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................211116.001160010700010160100000
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................231111.001110095000001130200000
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................22193.0093003314000031140100000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20179.007900000010201704100000
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................21170.0070002512000015170100000
........................................................................AAAGGAACGATCGTTGTGG.....................................................................................................................................................................................19169.0069006800000100000000
.........................................................................................................................AGTGATTTTCCTTTATA......................................................................................................................................17167.00670000000049180000000
........................................................................AAAGGAACGATCGTTGTGAG....................................................................................................................................................................................20165.0065006500000000000000
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................18156.0056004100000681000000
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21147.0047004103103403001000
........................................................................AAAGGAACGATCGTTGTGATATTT................................................................................................................................................................................24133.0033000000101100030000
............................................................................GAACGATCGTTGTGATAT..................................................................................................................................................................................18129.0029002400000140000000
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................19129.0029000012003210200000
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................18126.00260020010011110100000
........................................................................AAAGGAACGATCGTTGTGATATGAA...............................................................................................................................................................................25126.0026001300000670000000
..........................................................................AGGAACGATCGTTGTGATAT..................................................................................................................................................................................20125.0025001610000350000000
...........................................................................GGAACGATCGTTGTGATATG.................................................................................................................................................................................20123.002300810000680000000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................21123.002300900000770000000
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................21121.002100200100750600000
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................19120.0020000000000301700000
.......................................................................AAAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................23119.0019001100000530000000
............................................................................GAACGATCGTTGTGATATG.................................................................................................................................................................................19119.001900600000480100000
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................18118.0018000000000001800000
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25118.0018001400000010300000
...........................................................................GGAACGATCGTTGTGATAT..................................................................................................................................................................................19116.0016001200000220000000
........................................................................AAAGGAACGATCGTTGTGATATGAT...............................................................................................................................................................................25115.0015001300000000101000
.........................................................................AAGGAACGATCGTTGTGATA...................................................................................................................................................................................20114.0014001200000110000000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................23114.001400100001450300000
........................................................................AAAGGAACGATCGTT.........................................................................................................................................................................................15114.001400000001670000000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................20113.001300000000240700000
........................................................................AAAGGAACGATCGTTGTGATAAA.................................................................................................................................................................................23112.001202400000310002000
...................................................................................................................TATCACAGTGATTTTCCT...........................................................................................................................................18111.001100000300110600000
.............................................................................AACGATCGTTGTGATAT..................................................................................................................................................................................17111.001100000000362000000
..........................................................................AGGAACGATCGTTGTGAT....................................................................................................................................................................................18111.0011001100000000000000
...................................................................................................................TATCACAGTGATTTTCCTTTATAAA....................................................................................................................................25110.001000110000220400000
.........................................................................AAGGAACGATCGTTGTGAT....................................................................................................................................................................................19110.001000900000000100000
........................................................................AAAGGAACGATCGTTG........................................................................................................................................................................................16110.001000000000451000000
........................................................................................................................CAGTGATTTTCCTTTATA......................................................................................................................................1819.00900000000270000000
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................2119.00900700000010001000
..........................................................................................................................GTGATTTTCCTTTATA......................................................................................................................................1618.00800000000620000000
...........................................................................GGAACGATCGTTGTGATA...................................................................................................................................................................................1818.00800300000140000000
.........................................................................................................................AGTGATTTTCCTTTAT.......................................................................................................................................1618.00800000000800000000
...................................................................................................................TATCACAGTGATTTTCCTTTATC......................................................................................................................................2317.00700000000100600000
..........................................................................AGGAACGATCGTTGTGATA...................................................................................................................................................................................1917.00700600000010000000
.......................................................................AAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2117.00700600000010000000
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................2316.00600000000100500000
..................................................A-T-TCATCGGGCCATTCGCTA........................................................................................................................................................................................................2016.00600600000000000000
....................................................................................................................ATCACAGTGATTTTCCTTTA........................................................................................................................................2016.00600010100010300000
.....................................................................................................................TCACAGTGATTTTCCTTTATAA.....................................................................................................................................2216.00600000000320100000
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................2416.00600000000110400000
........................................................................AAAGGAACGATCGTTGTGATATGTC...............................................................................................................................................................................2515.00500400000010000000
droSec2
G--------------------------TTAAGTGAT-------CCCCAA-A-T-TCATCGGGCCATTCGCTAAAAGGAACGATCGTTGTGATATGAGTTG-TTCC----CGAACATATCACAGTGATTTTCCTTTATAACGCATGT----TTAAAGTCCACAA--T-------------------------------------TCATCA--A---GGAAAATTA--AGCC-AAG--------TTGGCAG--CTTAC---TAA--------ACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................23128672.00286723921527808457
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2217289.00728995226980192
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................2211700.001700861159419
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................2111183.0011839211666
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................201899.008992487419
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................231631.00631184042324
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................221177.001774401330
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................211174.001741501581
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................241139.00139301351
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................241109.00109201070
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................23197.009711923
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................22175.0075280443
......................................................................TAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................22166.006600660
....................................................T-TCATCGGGCCATTCGCTA........................................................................................................................................................................................................19166.006650547
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................24157.005700561
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................21143.004370351
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................23140.004010381
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................24134.003460280
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................19131.003110300
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................23131.003100310
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................18127.002700270
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20127.002720241
...................................................................................................................TATCACAGTGATTTTCCT...........................................................................................................................................18126.002600251
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21123.002320210
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................22122.002200220
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25116.001601150
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................18113.001300130
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................20110.001000100
......................................................................TAAAAGGAACGATCGTTGTGATA...................................................................................................................................................................................23110.001000100
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................2118.0080080
.........................................................................AAGGAACGATCGTTGTGATA...................................................................................................................................................................................2017.0071060
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................2316.0060060
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................2116.0064020
........................................................................AAAGGAACGATCGTTGTGATATGAA...............................................................................................................................................................................2515.0050050
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................1915.0050050
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................2114.0043010
..................................................A-T-TCATCGGGCCATTCGCTA........................................................................................................................................................................................................2014.0040040
............................................................................GAACGATCGTTGTGATATG.................................................................................................................................................................................1914.0040040
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................2213.0030030
............................................................................GAACGATCGTTGTGATAT..................................................................................................................................................................................1813.0030030
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................2313.0030030
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................1813.0030030
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................2113.0030030
........................................................................AAAGGAACGATCGTTGTGATATGGT...............................................................................................................................................................................2512.0020020
..........................................................................AGGAACGATCGTTGTGATAT..................................................................................................................................................................................2012.0021010
......................................................................TAAAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2412.0020011
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................2412.0020020
........................................................................AAAGGAACGATCGTTGTGATATGTA...............................................................................................................................................................................2512.0020020
.......................................................................AAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2112.0020020
......................................................................TAAAAGGAACGATCGTTGTGA.....................................................................................................................................................................................2112.0020020
........................................................................AAAGGAACGATCGTTGTGATAG..................................................................................................................................................................................2212.0020020
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................2412.0020020
........................................................................AAAGGAACGATCGTTGTGATATGAT...............................................................................................................................................................................2512.0020011
........................................................................AAAGGAACGATCGTTGTGATATTTT...............................................................................................................................................................................2511.0010010
....................................................................................................................ATCACAGTGATTTTCCTT..........................................................................................................................................1811.0010010
...............................................AA-A-T-TCATCGGGCCATTCGCTA........................................................................................................................................................................................................2211.0010010
........................................................................AAAGGAACGATCGTTGTTC.....................................................................................................................................................................................1911.0010010
....................................................................................................................ATCACAGTGATTTTCCTTTATAG.....................................................................................................................................2311.0010010
.........................................................................................................................AGTGATTTTCCTTTATAA.....................................................................................................................................1811.0010010
...................................................................................................................TATCACAGTGATTTTCCTTATA.......................................................................................................................................2221.0020020
........................................................................AAAGGAACGATCGTTGTGATACT.................................................................................................................................................................................2311.0010010
.....................................................................CTAAAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2311.0010010
........................................................................AAAGGAACGATCGTTGTGATATTT................................................................................................................................................................................2411.0010010
........................................................................AAAGGAACGATCGTTGTGT.....................................................................................................................................................................................1911.0010010
droYak3
AAATC-------------------GAGTTAAGTGTT-------CCCCCA-A-T-TTAACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTA-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----ACAAAGTCCACAA--C-------------------------------------TCATCA--A---GGGAAATGAA-AGCCAAAG--------TCG-------------------------GCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................231203258.0020325828641926911043572652000
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................22176864.00768642831739572786425951180
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................21110780.0010780215104113361101040
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................2215615.00561500561140000000
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................2213667.003667032191217230000000
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................2313427.003427013198614280000000
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................2012567.00256736223301940130010
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................2311430.001430001370600000000
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................2411377.001377201346280100000
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................241748.0074800729180100000
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................211505.00505013271770000000
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................221481.00481033671110000000
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................241426.0042600407190000000
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................201396.003964039200000000
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................231325.0032500311140000000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................231246.0024600235110000000
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................221193.001930718510000000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................191153.001534013990001000
...................................................................................................................TATCACAGTGATTTTCCTTTAC.......................................................................................................................................221116.001160011330000000
....................................................T-TTAACGGGCCGTTCGCTA........................................................................................................................................................................................................19194.00940056380000000
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21190.00900367200000000
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................24173.00730136360000000
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................22171.0071006740000000
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................23167.0067006520000000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20159.0059009500000000
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................21153.0053035000000000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................21149.0049004900000000
........................................................................AAAGGAACGATCGTTGTGATATGG................................................................................................................................................................................24147.0047004430000000
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................21132.0032003110000000
....................................................................................................................ATCACAGTGATTTTCCTTTAC.......................................................................................................................................21130.0030003000000000
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................18124.0024002220000000
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................19120.0020015140000000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................20120.0020011090000000
........................................................................AAAGGAACGATCGTTGTGATT...................................................................................................................................................................................21120.0020002000000000
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................18117.0017001700000000
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................21114.0014011210000000
...........................................................................GGAACGATCGTTGTGATATG.................................................................................................................................................................................20114.0014001400000000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................23113.0013001030000000
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................25113.0013001120000000
........................................................................AAAGGAACGATCGTTGTGATC...................................................................................................................................................................................21112.001200930000000
....................................................................................................................ATCACAGTGATTTTCCTTTA........................................................................................................................................20112.0012001110000000
.........................................................................AAGGAACGATCGTTGTGATAC..................................................................................................................................................................................21111.0011001100000000
..........................................................................AGGAACGATCGTTGTGATAT..................................................................................................................................................................................20111.0011001100000000
........................................................................AAAGGAACGATCGTTGTGATATTT................................................................................................................................................................................24111.0011001100000000
........................................................................AAAGGAACGATCGTTGTGATATGAT...............................................................................................................................................................................25111.0011001100000000
droEre2
AAATC-------------------CAGTTAAGTGAT-------CCCCTA-A-T-TTGACGGGCCGTTCGCTAAAAGGAACGATCGTTGTGATATGCGTTG-TTCC----CTAACATATCACAGTGATTTTCCTTTATAACGCATGT----AAAAAGTCCAAAA--C-------------------------------------TCATCA--A--TGGGAAATGAA-AGCCAAAG--------TTGCCAG--CTTAC---TTA-----GCTAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
........................................................................AAAGGAACGATCGTTGTGATATG.................................................................................................................................................................................2316818.00681811512632230038166
...................................................................................................................TATCACAGTGATTTTCCTTTAT.......................................................................................................................................2213303.003303361170401233140
........................................................................AAAGGAACGATCGTTGTGATAT..................................................................................................................................................................................2212638.00263830013661954980
...................................................................................................................TATCACAGTGATTTTCCTTTATA......................................................................................................................................2312516.00251651214570545020
........................................................................AAAGGAACGATCGTTGTGATA...................................................................................................................................................................................211465.00465282610174110
....................................................................................................................ATCACAGTGATTTTCCTTTAT.......................................................................................................................................211324.00324481520123010
....................................................................................................................ATCACAGTGATTTTCCTTTATA......................................................................................................................................221229.0022952143034000
........................................................................AAAGGAACGATCGTTGTGAT....................................................................................................................................................................................201229.002294740145240
........................................................................AAAGGAACGATCGTTGTGATATT.................................................................................................................................................................................231194.001948280158000
........................................................................AAAGGAACGATCGTTGTGATAC..................................................................................................................................................................................221112.00112110803000
.........................................................................AAGGAACGATCGTTGTGATATG.................................................................................................................................................................................221109.00109107101000
...................................................................................................................TATCACAGTGATTTTCCTTTAC.......................................................................................................................................221103.0010309904000
...................................................................................................................TATCACAGTGATTTTCCTTTA........................................................................................................................................21166.00661534017000
...................................................................................................................TATCACAGTGATTTTCCTTTATAA.....................................................................................................................................24165.00651032023000
........................................................................AAAGGAACGATCGTTGTGATATGT................................................................................................................................................................................24155.005534209100
........................................................................AAAGGAACGATCGTTGTGATATC.................................................................................................................................................................................23143.0043414025000
...................................................................................................................TATCACAGTGATTTTCCTTT.........................................................................................................................................20137.003718028000
.........................................................................AAGGAACGATCGTTGTGATAT..................................................................................................................................................................................21134.003431201000
........................................................................AAAGGAACGATCGTTGTGATATGA................................................................................................................................................................................24130.003061608000
........................................................................AAAGGAACGATCGTTGTGATATGC................................................................................................................................................................................24119.001901207000
....................................................T-TTGACGGGCCGTTCGCTA........................................................................................................................................................................................................19117.001740013000
.......................................................................................................................ACAGTGATTTTCCTTTAT.......................................................................................................................................18116.001601015000
........................................................................AAAGGAACGATCGTTGTGA.....................................................................................................................................................................................19113.00130606010
....................................................................................................................ATCACAGTGATTTTCCTTTAC.......................................................................................................................................21111.001101100000
....................................................................................................................ATCACAGTGATTTTCCTTTATAA.....................................................................................................................................23110.00103403000
...................................................................................................................TATCACAGTGATTTTCCTTTATAT.....................................................................................................................................24110.00101306000
........................................................................AAAGGAACGATCGTTGTGATACC.................................................................................................................................................................................23110.00100901000
........................................................................AAAGGAACGATCGTTGTGATATA.................................................................................................................................................................................2319.0092007000
.....................................................................................................................TCACAGTGATTTTCCTTTAT.......................................................................................................................................2018.0082204000
........................................................................AAAGGAACGATCGTTGTGAC....................................................................................................................................................................................2017.0070700000
...................................................................................................................TATCACAGTGATTTTCCTTTATAC.....................................................................................................................................2416.0060600000
...................................................................................................................TATCACAGTGATTTTCCTT..........................................................................................................................................1916.0061104000
.....................................................................................................................TCACAGTGATTTTCCTTTATA......................................................................................................................................2116.0060501000
.......................................................................................................................ACAGTGATTTTCCTTTATA......................................................................................................................................1915.0050203000
........................................................................AAAGGAACGATCGTTGTGATATGTT...............................................................................................................................................................................2514.0040102100
........................................................................AAAGGAACGATCGTTGTGATACT.................................................................................................................................................................................2314.0040103000
........................................................................AAAGGAACGATCGTTGTG......................................................................................................................................................................................1814.0040102010
...................................................................................................................TATCACAGTGATTTTCCTTTATG......................................................................................................................................2314.0041201000
..........................................................................AGGAACGATCGTTGTGATATG.................................................................................................................................................................................2114.0043100000
...................................................................................................................TATCACAGTGATTTTCCTTTATT......................................................................................................................................2313.0030201000
...........................................................................GGAACGATCGTTGTGATATG.................................................................................................................................................................................2013.0033000000
....................................................................................................................ATCACAGTGATTTTCCTTTATT......................................................................................................................................2213.0030102000
......................................................................................................................CACAGTGATTTTCCTTTATA......................................................................................................................................2013.0031200000
......................................................................................................................CACAGTGATTTTCCTTTAT.......................................................................................................................................1913.0031101000
...................................................................................................................TATCACAGTGATTTTCCTTTATC......................................................................................................................................2313.0030102000
.............................................................................AACGATCGTTGTGATATG.................................................................................................................................................................................1812.0020002000
........................................................................AAAGGAACGATCGTTGTGATAA..................................................................................................................................................................................2212.0020101000
.........................................................................AAGGAACGATCGTTGTGAT....................................................................................................................................................................................1912.0021100000
........................................................................AAAGGAACGATCGTTGTGATATTA................................................................................................................................................................................2412.0020002000
............................................................................GAACGATCGTTGTGATATG.................................................................................................................................................................................1912.0021001000
...................................................................................................................TATCACAGTGATTTTCCTTTATAAA....................................................................................................................................2512.0020101000
.....................................................................................................................TCACAGTGATTTTCCTTTATAA.....................................................................................................................................2212.0021001000
........................................................................AAAGGAACGATCGTTGTGATG...................................................................................................................................................................................2112.0021100000
...................................................................................................................TATCACAGTGATTTTCCT...........................................................................................................................................1812.0020001010
..........................................................................AGGAACGATCGTTGTGATAT..................................................................................................................................................................................2012.0022000000
........................................................................AAAGGAACGATCGTTGTGATAAT.................................................................................................................................................................................2312.0020002000

Generated: 10/20/2015 at 10:18 PM