ID:

dps-mir-4

 Coordinate:

3:12677418-12677498 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.8 -27.8 -27.1

Flybase annnotation

pre_miRNA [Dpse\mir-4-RM]; utr3 [utr3_minus_3617]; miRNA [Dpse\miR-4-RA]

No Repeatable elements found

Sense Strand Reads

AAAAAGTGACAAAGTTTGTGTACACTCCACGAGTTGATACCTTATTGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACTACCTACCACAACCACACCCACACCAACACCCACACCC

************************************************.((((((((.((((((..((((.(((.(((.((..((((((.....)))))).))))).))).))))..)))))).))))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total M059

embryo

 GSM343916

embryo

 M040

female body

 M062

head

 SRR902011

testis

 V112

male body		 SRR902012

CNS imaginal disc
..................................................................................................ATAAAGCTAGACAACCATTGAA............................................................. 22 0 1 45829.00 45829 40503 3994 1301 24 4 3 0
..................................................................................................ATAAAGCTAGACAACCATTGA.............................................................. 21 0 1 11063.00 11063 8361 2063 633 6 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAA............................................................ 23 1 1 5556.00 5556 5109 352 94 1 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAA............................................................. 22 1 1 4981.00 4981 4966 10 0 5 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAG............................................................ 23 0 1 4487.00 4487 3732 636 114 5 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTG............................................................... 20 0 1 1573.00 1573 1247 225 100 0 0 0 1
...................................................................................................TAAAGCTAGACAACCATTGAAG............................................................ 22 0 1 1166.00 1166 914 227 23 2 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGA.............................................................. 21 1 1 1029.00 1029 1028 1 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAA............................................................. 22 1 1 921.00 921 916 4 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAT............................................................ 23 1 1 822.00 822 732 67 23 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 647.00 647 647 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAC............................................................ 23 1 1 546.00 546 509 28 9 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAC............................................................. 22 1 1 523.00 523 513 10 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 456.00 456 453 2 0 1 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAA............................................................. 21 0 1 335.00 335 255 24 56 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................... 23 0 1 334.00 334 223 105 6 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAT................................................................. 18 0 1 313.00 313 313 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAA............................................................. 22 1 1 300.00 300 295 5 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAA............................................................. 22 2 1 294.00 294 294 0 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 277.00 277 274 3 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAA............................................................. 23 0 1 264.00 264 259 3 2 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 24 0 1 254.00 254 19 222 13 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGA.............................................................. 21 1 1 218.00 218 217 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................... 24 0 1 215.00 215 146 66 3 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAA............................................................. 22 1 1 211.00 211 202 7 2 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAA............................................................. 22 1 1 205.00 205 156 49 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAA............................................................. 22 1 1 161.00 161 156 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAA............................................................. 22 1 1 149.00 149 144 5 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAA............................................................ 22 1 1 142.00 142 134 6 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAA............................................................. 22 1 1 141.00 141 113 27 0 1 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTG............................................................... 20 1 1 140.00 140 140 0 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAA............................................................. 22 1 1 138.00 138 106 30 2 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAA............................................................ 23 2 1 136.00 136 136 0 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAA............................................................. 22 1 1 110.00 110 110 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................... 24 2 1 102.00 102 97 2 3 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAG............................................................ 23 1 1 93.00 93 93 0 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAA............................................................. 22 1 1 89.00 89 85 2 2 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGA.............................................................. 21 1 1 85.00 85 77 7 0 1 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGG................................................................................................. 22 0 1 82.00 82 30 32 20 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGA.............................................................. 22 0 1 81.00 81 72 4 4 1 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAC............................................................ 23 2 1 79.00 79 79 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAT............................................................ 23 2 1 78.00 78 77 0 0 1 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGGA............................................................. 22 1 1 77.00 77 35 42 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 25 0 1 75.00 75 11 58 6 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGA.............................................................. 21 2 1 75.00 75 75 0 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGA.............................................................. 21 1 1 73.00 73 73 0 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 23 0 1 71.00 71 47 21 2 0 1 0 0
..................................................................................................ATAAAGCTAGACAACCATTGTA............................................................. 22 1 1 67.00 67 47 20 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAA............................................................. 22 2 1 65.00 65 65 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAT............................................................. 22 1 1 65.00 65 45 20 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGA.............................................................. 20 0 1 61.00 61 19 8 34 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAA............................................................. 22 1 1 59.00 59 58 1 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAA............................................................. 20 0 1 57.00 57 54 1 2 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAA............................................................. 22 1 1 57.00 57 54 2 0 1 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGA.............................................................. 21 1 1 56.00 56 45 11 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGT................................................................................................ 22 0 1 53.00 53 22 29 2 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAA............................................................ 23 3 1 48.00 48 48 0 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAC............................................................ 22 1 1 48.00 48 43 3 2 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................... 23 1 1 47.00 47 44 3 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAT............................................................ 22 1 1 47.00 47 40 6 1 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGA.............................................................. 21 1 1 46.00 46 45 1 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAG............................................................ 22 1 1 44.00 44 43 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAC................................................................. 18 1 2 42.50 85 85 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAA............................................................ 23 2 1 42.00 42 36 6 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAA............................................................ 24 1 1 42.00 42 42 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAA............................................................. 22 1 1 41.00 41 34 7 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAC............................................................. 22 2 1 40.00 40 40 0 0 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGAA............................................................. 22 1 1 40.00 40 32 8 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAA............................................................. 22 1 1 40.00 40 36 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAG............................................................. 22 1 1 39.00 39 30 8 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAA............................................................. 22 1 1 39.00 39 25 14 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGA.............................................................. 21 1 1 38.00 38 36 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATT................................................................ 19 0 1 37.00 37 25 7 5 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAA............................................................ 23 2 1 36.00 36 36 0 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 36.00 36 36 0 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAA............................................................. 22 1 1 35.00 35 35 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGA.............................................................. 21 1 1 35.00 35 29 6 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGAA............................................................. 22 2 1 35.00 35 35 0 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGA.............................................................. 21 1 1 34.00 34 21 10 3 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCA............................................................. 22 1 1 33.00 33 0 33 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAG.................................................................................................. 21 0 1 33.00 33 2 24 7 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGAA............................................................. 22 1 1 32.00 32 27 5 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCAT................................................................. 18 1 1 32.00 32 32 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGT.............................................................. 21 1 1 32.00 32 12 19 1 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGAA............................................................. 22 2 1 29.00 29 29 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGT........................................................... 24 1 1 28.00 28 28 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGAA............................................................. 22 1 1 28.00 28 21 7 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGA.............................................................. 21 1 1 27.00 27 20 7 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAG............................................................ 23 1 1 27.00 27 25 1 0 1 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGAA............................................................. 22 1 1 27.00 27 16 11 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................... 24 1 1 27.00 27 24 1 2 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................... 23 1 1 26.00 26 23 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGAA............................................................. 22 1 1 26.00 26 18 8 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................... 24 1 1 26.00 26 25 0 0 1 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAT............................................................ 23 2 1 26.00 26 26 0 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGA.............................................................. 21 1 1 26.00 26 26 0 0 0 0 0 0
..................................................................................................ATAAAGGTAGACAACCATTGAA............................................................. 22 1 1 26.00 26 22 4 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGAA............................................................. 22 1 1 26.00 26 23 3 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 25.00 25 25 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGAA............................................................. 22 1 1 24.00 24 17 7 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGAA............................................................. 22 1 1 24.00 24 17 7 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGT................................................................................................ 23 0 1 24.00 24 8 14 2 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 24.00 24 22 1 1 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAA............................................................ 23 2 1 24.00 24 24 0 0 0 0 0 0
..................................................................................................ATGAAGCTAGACAACCATTGAA............................................................. 22 1 1 23.00 23 15 8 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGG.............................................................. 21 1 1 23.00 23 14 9 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAA............................................................. 22 2 1 23.00 23 23 0 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAAG............................................................ 22 1 1 23.00 23 22 0 0 1 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAG............................................................ 23 2 1 22.00 22 22 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGAA............................................................. 22 1 1 22.00 22 20 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAC............................................................. 22 2 1 22.00 22 22 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGAA............................................................. 22 1 1 22.00 22 15 6 0 0 1 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGAC............................................................. 22 3 1 22.00 22 22 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACA............................................................ 23 2 1 22.00 22 18 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAG............................................................ 23 1 1 22.00 22 18 4 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 24 0 1 21.00 21 9 8 4 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGAA............................................................. 22 1 1 21.00 21 18 3 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGA.............................................................. 21 1 1 21.00 21 19 2 0 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTGAA............................................................. 22 1 1 20.00 20 19 1 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTG............................................................... 20 1 1 20.00 20 19 1 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 20.00 20 19 1 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAAG............................................................ 23 1 1 20.00 20 16 3 1 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGG................................................................................................. 21 0 1 20.00 20 9 6 5 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGA.............................................................. 21 1 1 20.00 20 5 15 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAG............................................................ 23 1 1 19.00 19 19 0 0 0 0 0 0
..................................................................................................ATAAAGCTAAACAACCATTGAA............................................................. 22 1 1 19.00 19 16 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAA............................................................ 23 2 1 18.00 18 15 3 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACTATTGAA............................................................. 22 2 1 18.00 18 18 0 0 0 0 0 0
..................................................................................................AGAAAGCCAGACAACCATTGAA............................................................. 22 2 1 18.00 18 18 0 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTGAA............................................................. 22 1 1 18.00 18 5 13 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAATCATTGAA............................................................. 22 1 1 18.00 18 10 8 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAAA............................................................ 23 2 1 18.00 18 16 2 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAAACATTGAA............................................................. 22 2 1 17.00 17 17 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGAAAACCATTGAA............................................................. 22 2 1 17.00 17 17 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAA............................................................. 22 1 1 17.00 17 0 17 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAT........................................................... 24 1 1 17.00 17 14 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAAA............................................................ 23 2 1 16.00 16 16 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAAA........................................................... 24 3 1 16.00 16 16 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACG............................................................ 23 1 1 16.00 16 14 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGTCAACCATTGAA............................................................. 22 1 1 15.00 15 10 5 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAC............................................................. 23 1 1 15.00 15 15 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACAATTGAA............................................................. 22 1 1 15.00 15 8 7 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGA.............................................................. 21 2 1 15.00 15 15 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACGACCATTGAA............................................................. 22 1 1 15.00 15 10 5 0 0 0 0 0
..................................................................................................AGAAATCTAGACAACCATTGAA............................................................. 22 2 1 15.00 15 15 0 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGA.............................................................. 21 1 1 14.00 14 14 0 0 0 0 0 0
..................................................................................................ATAAAGCGAGACAACCATTGAA............................................................. 22 1 1 14.00 14 7 7 0 0 0 0 0
..................................................................................................AGCAAGCTAGACAACCATTGAA............................................................. 22 2 1 14.00 14 14 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAG............................................................ 23 1 1 14.00 14 8 6 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAC............................................................. 22 2 1 14.00 14 14 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCAACATTGAA............................................................. 22 2 1 14.00 14 14 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGAA............................................................. 22 1 1 13.00 13 11 2 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAGT........................................................... 22 0 1 13.00 13 9 4 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGA.............................................................. 19 0 1 13.00 13 10 0 3 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAG............................................................ 21 0 1 13.00 13 11 1 1 0 0 0 0
..................................................................................................ATAAAGCTAGAGAACCATTGAA............................................................. 22 1 1 13.00 13 11 2 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAT............................................................. 23 1 1 13.00 13 12 1 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 13.00 13 13 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACTACCATTGAA............................................................. 22 1 1 12.00 12 1 11 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAA............................................................ 23 2 1 12.00 12 12 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................... 24 2 1 12.00 12 12 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATAGAA............................................................. 22 1 1 12.00 12 12 0 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTGA.............................................................. 21 1 1 12.00 12 2 10 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAATGAA............................................................. 22 1 1 11.00 11 8 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAA............................................................ 23 2 1 11.00 11 11 0 0 0 0 0 0
...................................................................................................TAAAGCTGGACAACCATTGAAG............................................................ 22 1 1 11.00 11 8 3 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 11.00 11 10 1 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAC............................................................. 22 2 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTG............................................................... 20 1 1 11.00 11 10 1 0 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGAA............................................................. 24 0 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................AGAAAGCTGGACAACCATTGAA............................................................. 22 2 1 11.00 11 11 0 0 0 0 0 0
...............................................................................................ATCATAAAGCTAGACAACCATTGAA............................................................. 25 0 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCAG............................................................ 23 1 1 11.00 11 0 11 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGA.............................................................. 21 1 1 11.00 11 7 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTCAA............................................................. 22 1 1 11.00 11 5 6 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAGT........................................................... 23 1 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGA.............................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0
...................................................................................................ATAAGCTAGACAACCATTGAA............................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAG............................................................ 24 0 1 10.00 10 10 0 0 0 0 0 0
..................................................................................................ATAAAGCTACACAACCATTGAA............................................................. 22 1 1 10.00 10 3 7 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGA.............................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0
...................................................................................................TTAAGCTAGACAACCATTGAAG............................................................ 22 1 1 10.00 10 10 0 0 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGA.............................................................. 23 0 1 10.00 10 10 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGA.............................................................. 21 1 1 10.00 10 5 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAG............................................................ 23 1 1 10.00 10 9 1 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTG............................................................... 20 1 1 10.00 10 9 1 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAAA............................................................ 23 2 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAG............................................................ 23 1 1 9.00 9 9 0 0 0 0 0 0
.............................................................................................CGATCATAAAGCTAGACAACCATTGAA............................................................. 27 1 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGA.............................................................. 21 1 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGA.............................................................. 21 1 1 9.00 9 5 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAAACATTGAA............................................................. 22 2 1 9.00 9 9 0 0 0 0 0 0
...................................................................................................TAAAGCTCGACAACCATTGAAG............................................................ 22 1 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAAA............................................................ 23 3 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGA.............................................................. 21 1 1 9.00 9 5 3 1 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGA.............................................................. 21 1 1 9.00 9 5 3 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGGAG............................................................ 23 1 1 9.00 9 6 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCTTTGAA............................................................. 22 1 1 9.00 9 5 4 0 0 0 0 0
..................................................................................................ATAAAGTTAGACAACCATTGAA............................................................. 22 1 1 9.00 9 4 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTG............................................................... 20 1 1 9.00 9 8 0 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACAATTGA.............................................................. 21 1 1 9.00 9 1 8 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAATT........................................................... 24 1 1 8.00 8 6 2 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAA............................................................. 19 0 1 8.00 8 4 2 2 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGA.............................................................. 21 1 1 8.00 8 6 2 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTG............................................................... 21 0 1 8.00 8 7 1 0 0 0 0 0
...............................................................CGTTGGTCGTCCAGCCTTAGGTG............................................................................................... 23 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGA.............................................................. 21 1 1 8.00 8 0 8 0 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGAA............................................................. 26 0 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAAA............................................................ 23 3 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTAAA............................................................. 22 2 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCAA............................................................ 23 2 1 8.00 8 0 8 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGTA............................................................. 22 2 1 8.00 8 7 1 0 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGAAA............................................................ 23 2 1 8.00 8 7 1 0 0 0 0 0
..................................................................................................CTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 8.00 8 8 0 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAG.................................................................................................. 20 0 1 8.00 8 0 3 2 0 2 1 0
..................................................................................................TTAAAGCTAGACAACCATTG............................................................... 20 1 1 8.00 8 7 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAA.............................................................. 21 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAT............................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0
...................................................................................................TAAAGCTAGACACCCATTGAAG............................................................ 22 1 1 7.00 7 7 0 0 0 0 0 0
.................................................................................................CGTAAAGCTAGACAACCATTGAA............................................................. 23 1 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGA.............................................................. 21 1 1 7.00 7 5 2 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAAGT........................................................... 23 1 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTG............................................................... 20 1 1 7.00 7 4 3 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAC............................................................ 23 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTA.............................................................. 21 1 1 7.00 7 4 3 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTG............................................................... 20 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGGTAGACAACCATTGA.............................................................. 21 1 1 7.00 7 3 4 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGGA............................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTTAA............................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGAAG............................................................ 23 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGGAA............................................................ 23 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTG............................................................... 20 1 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGA.............................................................. 21 1 1 6.00 6 2 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAAA............................................................ 23 2 1 6.00 6 3 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAT............................................................ 23 2 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGAGAACCATTGAAA............................................................ 23 2 1 6.00 6 5 1 0 0 0 0 0
................................................................TTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 23 0 1 6.00 6 0 6 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGAAA............................................................ 23 3 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAAA............................................................ 23 2 1 6.00 6 0 6 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCAACATTGAA............................................................. 22 3 4 6.00 24 24 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAC............................................................. 22 3 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAC............................................................ 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAAG............................................................ 23 1 1 6.00 6 0 6 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAT............................................................ 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGC.............................................................. 21 1 1 6.00 6 2 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGA.............................................................. 21 1 1 6.00 6 3 3 0 0 0 0 0
...................................................................................................AAAAGCTAGACAACCATTGAA............................................................. 21 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................GGAAAGCTAGACAACCATTGAA............................................................. 22 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAAA............................................................ 23 2 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAAG............................................................ 23 1 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTCGACAACCATTGAA............................................................. 22 1 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGC........................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGATG............................................................ 23 1 1 6.00 6 1 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAAG............................................................ 23 1 1 6.00 6 4 2 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACAATTGAAG............................................................ 22 1 1 6.00 6 6 0 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAA............................................................. 21 1 1 6.00 6 6 0 0 0 0 0 0
............................................TTGTGGTTGCAATTAGTTT...................................................................................................................... 19 0 1 6.00 6 1 5 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAA............................................................. 21 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGAAA............................................................ 23 2 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACT............................................................ 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCAT................................................................. 18 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAACC........................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAC............................................................ 23 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGA.............................................................. 21 1 1 5.00 5 4 1 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGTT.......................................................... 24 0 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCAGTGAA............................................................. 22 2 1 5.00 5 3 2 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTGAT............................................................................................. 25 0 1 5.00 5 4 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGA.............................................................. 21 1 1 5.00 5 4 1 0 0 0 0 0
...................................................................................................AAAAGCTAGACAACCATTGAAA............................................................ 22 2 1 5.00 5 5 0 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAAA........................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAATCATTGA.............................................................. 21 1 1 5.00 5 1 4 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTTAA............................................................. 22 2 1 5.00 5 4 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAACA........................................................... 24 2 1 5.00 5 3 2 0 0 0 0 0
.................................................................................................AATAAAGCTAGACAACCATTGAA............................................................. 23 1 1 5.00 5 1 0 4 0 0 0 0
..................................................................................................ATATAGCTAGCCAACCATTGAA............................................................. 22 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGATA............................................................ 23 2 1 5.00 5 2 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATAGA.............................................................. 21 1 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGAAA............................................................ 23 2 1 5.00 5 2 2 1 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAAGTT.......................................................... 22 0 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAAG............................................................ 23 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAC............................................................. 22 3 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................AGAAAGCAAGACAACCATTGAA............................................................. 22 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGA.............................................................. 21 1 1 5.00 5 3 2 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACTATTGAAG............................................................ 23 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................TTATAGCTAGACAACCATTGAA............................................................. 22 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAC............................................................ 23 2 1 5.00 5 5 0 0 0 0 0 0
...........................................................................................GACGATCATAAAGCTAGACAACCATTGAA............................................................. 29 3 1 5.00 5 5 0 0 0 0 0 0
.................................................................................................CACAAAGCTAGACAACCATTGAA............................................................. 23 1 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAGCATTGAA............................................................. 22 1 1 5.00 5 3 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTC............................................................... 20 1 1 5.00 5 5 0 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAT............................................................ 24 1 1 5.00 5 4 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGAAA............................................................ 23 2 1 5.00 5 2 3 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAAGT........................................................... 21 0 1 5.00 5 1 4 0 0 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGAAA............................................................ 23 2 1 5.00 5 4 1 0 0 0 0 0
..................................................................................................ATAAAGCTTGACAACCATTGAA............................................................. 22 1 1 5.00 5 1 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACATCCATTGAA............................................................. 22 1 1 5.00 5 3 1 0 1 0 0 0
..................................................................................................AGAAAACTAGACAACCATTGAA............................................................. 22 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGA.............................................................. 21 1 1 5.00 5 4 1 0 0 0 0 0
.................................................................................................TATAAAGCTAGACAACCATTGAA............................................................. 23 1 1 5.00 5 2 1 2 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAT............................................................ 23 2 1 5.00 5 5 0 0 0 0 0 0

Anti-sense strand reads

TTTTTCACTGTTTCAAACACATGTGAGGTGCTCAACTATGGAATAACACCAACGTTAATCAAAGAAACCAGCAGGTCGGAATCCACTAAAGAGACTAGTATTTCGATCTGTTGGTAACTTCAAGCAACACCGTAAACGTCGTGATGGATGGTGTTGGTGTGGGTGTGGTTGTGGGTGTGGG

**********************************************.((((((((.((((((..((((.(((.(((.((..((((((.....)))))).))))).))).))))..)))))).))))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM343916

embryo

 M040

female body

 V112

male body		 GSM444067

head
.................................................................................................GTATTTCGATCTGTTGGTTTCT.............................................................. 22 2 2 1.50 3 3 0 0 0
.................................................................................................GTATTTCGATCTGTTGGTGACT.............................................................. 22 1 1 1.00 1 1 0 0 0
................................................................................................AGTATGTCGATCTGATGGAAACT.............................................................. 23 3 1 1.00 1 1 0 0 0
................................................................................................AGTATTTCGATGTATTGGTAGCT.............................................................. 23 3 1 1.00 1 1 0 0 0
.................................................................................................GTATTTCGCTCTGTTGGTACCA.............................................................. 22 3 1 1.00 1 1 0 0 0
.................................................................................................GTATTTCGACCTATTGGTGACT.............................................................. 22 3 1 1.00 1 1 0 0 0
................................................................................................AGTCTTTCGATCTATTGGTATCT.............................................................. 23 3 2 0.50 1 1 0 0 0
................................................................................................ACTATTTCGATCTATTGGTTACT.............................................................. 23 3 2 0.50 1 1 0 0 0
.................................................................................................GTCTTTCGATCTATTGGTTACT.............................................................. 22 3 2 0.50 1 1 0 0 0
................................................................................................TGTATGTCGATCTGTTGGTATCT.............................................................. 23 3 2 0.50 1 1 0 0 0
................................................................................................TGTATGTCGATCTATTGGTAACT.............................................................. 23 3 2 0.50 1 1 0 0 0
.................................................................................................GTATTTCGATCTGTTAGTTTCT.............................................................. 22 3 2 0.50 1 1 0 0 0
................................................................................................AGTATTTCGATCTGTTGGTTTTT.............................................................. 23 3 2 0.50 1 1 0 0 0
.................................................................................................GTATTTCGATCCGTTGGTTTCT.............................................................. 22 3 3 0.33 1 1 0 0 0
.......................................................................................................................................................TATTGGTGTGGGTGGGGTT........... 19 2 3 0.33 1 0 1 0 0
.................................................................................................GTATTTCGCTCTATTGGTTACT.............................................................. 22 3 3 0.33 1 1 0 0 0
.................................................................................................GTATGTCGATCTATTGGTAAAT.............................................................. 22 3 4 0.25 1 0 0 1 0
....................................................................................................................................................TGGTGTAGGGTTGGGTGTGGTT........... 22 3 9 0.11 1 0 1 0 0
....................................................................................................................................................TGGTGATGGTGTGGGTCTG.............. 19 2 10 0.10 1 0 1 0 0
..................................................................................................TGTTTCGATTTGTTGGTTACT.............................................................. 21 3 10 0.10 1 1 0 0 0
..................................................................................................................................................GATGGTAGTGGTGTGGGTG................ 19 2 10 0.10 1 0 1 0 0
........................................................................................AAGAAACTAGTTTTTCGA........................................................................... 18 2 14 0.07 1 0 0 0 1
....................................................................................................................................................TAGGGTTGGTGTGGGTGTGGTG........... 22 3 14 0.07 1 0 1 0 0
.........................................................................................................................................................TTCATGTGGGTGTGGTTGCGG....... 21 3 16 0.06 1 0 1 0 0
...............................................ACCAACGATAATCAAATAAAT................................................................................................................. 21 3 19 0.05 1 0 1 0 0
..........................................................................................................................................................TGGTGTGGGTGGGGTTGA......... 18 2 20 0.05 1 0 1 0 0
..............................................................................................................ATGGTAATTTCAAGCACC..................................................... 18 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 3:12677368-12677548 - dps-mir-4 Known_mirbase AAAAAGTG-----ACAAAGTTTGTGTACACTCCACGAGTTG-------------ATACCTTAT--TGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------ACCTACCA------------CAACCACACCCAC------ACCAACACCCACACCC
droPer2 scaffold_2:8906118-8906304 + dpe-mir-4 Known_mirbase AAAAAGTG-----ACAAAGTGTGTGTACACTCCACGAGTTG-------------ATACCTTAT--TGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------ACCTACCA------------CAACCACACCCACACCAACACCAACACCCATACCC
droWil2 scf2_1100000004514:1651572-1651718 - dwi-mir-4 Known_mirbase GAAGAATTAACT--T-----------------------------TAACCA---AA--T----G--GCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT--TTAAGGAC-ATCAA---------------------------------TAGCAAAGTTCA-----
droVir3 scaffold_12875:4112266-4112433 + dvi-mir-4 Known_mirbase TAACCGTC-----GCAATATATATATATAT---ATATAT-------------CTATATCATAT--AGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGG---C--------TATAATCTGACCATATATATAT-----------------------CTGAT-----
droMoj3 scaffold_6496:20936587-20936738 - dmo-mir-4 Known_mirbase AAAAGAAA-----ACAAAAT--------------------------------CTATATCGTAT--AGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC--T--------ATATATAA------------TATATATATATAC------------ATCTA-----
droGri2 scaffold_15112:2108641-2108785 - dgr-mir-4-1 Known_mirbase AAAAA-TG-----ATAA----------------------------AT-CGATCTATATTTTAT--AGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGA---T-------TATATA-GTG----T------ATA---T------------------AAT-A-----
droAna3 scaffold_13266:9731493-9731629 + dan-mir-4 Known_mirbase AAAGTTTCAAATAATA----------------------------TAC-CA---------ATAT--AAAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGC---TTATTAAC-AAGAA--------------------------------------------T-----
droBip1 scf7180000396427:874463-874575 + AAATAGTG-------------------------------------------------TTTCTT--AAAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGT---T---------------------------------------------------------------
droKik1 scf7180000302679:89216-89362 - ATAAAGTG-----C---AGT---TGTA------ACAAGTTAATATATCCA---A-------ACAAGGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCT---T--------ATGA----------------------T------------------ATTCA-----
droFic1 scf7180000454039:847913-848014 - AAA---------------------------------------------------------------ACGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCAC---T--------A------------------------------------------------------
droEle1 scf7180000491201:2013838-2013968 - AAGAGGCA-------------------------------------AT------------CCCC--AACGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAT---T-------TACAAGCCA------------ATA---C------------------AAAAA-----
droRho1 scf7180000780066:73787-73916 + AAAGAAGA------C------------------------------AT------------CCAA--GACAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACAT---T--------ACAATTCA------------ATA---A------------------AAC-A-----
droBia1 scf7180000302143:3059672-3059808 - AGTTAAAG----------------GTGC-------AAGTGGGCC-AT------------CAAA--CTCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------ACAAGCCA------------TA---------------------------A-----
droTak1 scf7180000415384:84160-84297 + AGTTAAAG-----TTAAAGTTAATGTGA-------ATGTAGGCA-AT------------CTAA--CTGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------A------------------------------------------------------
droEug1 scf7180000409474:2396976-2397088 + AAATAAAG-------------------------------------AT------------CTAA--AACGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T---------------------------------------------------------------
dm3 chr2R:15548770-15548896 - dme-mir-4 Known_mirbase AAATTAAA----------------------------------------------ATATTATGG--AGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCAC---C--------ACGAGTCA------------AGA--------------------------------
droSim2 2r:16196035-16196167 - dsi-mir-4 Known_mirbase AACTTCAA----------------------------------------------ATATTCTGT--GGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCAC---C--------ACAAGTCA------------AGA---A------------------ATCAA-----
droSec2 scaffold_1:13063493-13063625 - dse-mir-4 Known_mirbase AACTTCAA----------------------------------------------ATATTCTGT--GGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCAC---C--------ACAAGTCA------------GGA---A------------------ATCAA-----
droYak3 2R:13623892-13624014 + dya-mir-4 Known_mirbase AATTAATC----------------------------------------------AGATACTGG--GGCAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATT--------ACGG---------------------------------------------------
droEre2 scaffold_4845:9749024-9749146 - der-mir-4 Known_mirbase AAACAAA-----------------------------------------------AGATACTGT--AGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCAC---C--------AAGAGTTA-----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
AAAAAGTG-----ACAAAGTTTGTGTACACTCCACGAGTTG-------------ATACCTTAT--TGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------ACCTACCA------------CAACCACACCCAC------ACCAACACCCACACCCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................22145829.0045829013014050324399403040
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................21111063.0011063063383616206300000
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................2315556.0055560945109135200000
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................2314487.00448701143732563600000
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................2011573.00157301001247022500001
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................2211166.001166023914222700000
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................231822.0082202373206700000
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................231546.005460950902800000
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................221523.005230051301000000
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................211335.0033505625502400000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................231334.0033406223010500000
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................181313.00313003130000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................231264.00264022590300000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................241254.0025401319022200000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................241215.002150314606600000
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................221142.00142021340600000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................241102.0010203970200000
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................22182.00820203003200000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................22181.008104721400000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................25175.0075061105800000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................23171.0071024702100010
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................22165.0065004502000000
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20161.0061034190800000
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20157.005702540100000
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................22153.0053022202900000
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................22148.004802430300000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................................................23147.004700440300000
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................22147.004701400600000
......................................................................................................................ATAAAGCTAGACAACCAC..............................................................................................18242.508500850000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................24142.004200420000000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................22139.003901300800000
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19137.003705250700000
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................21133.003307202400000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................21132.0032011201900000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................24127.002702240100000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................23126.002600230300000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................................................24126.002600251000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................23124.002402801400000
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................21123.002300140900000
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................23122.002200180400000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................24121.00210490800000
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21120.00200590600000
.....................................................................................................................CATAAAGCTAGACAACCATTGAC..........................................................................................23115.001500150000000
........................................................................................................................AAAGCTAGACAACCATTGAAGT........................................................................................22113.00130090400000
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................19113.001303100000000
........................................................................................................................AAAGCTAGACAACCATTGAAG.........................................................................................21113.001301110100000
.....................................................................................................................CATAAAGCTAGACAACCATTGAT..........................................................................................23113.001300120100000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................................................24112.001200120000000
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................24111.001100110000000
...................................................................................................................ATCATAAAGCTAGACAACCATTGAA..........................................................................................25111.001100110000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAG.........................................................................................24110.001000100000000
....................................................................................................................TCATAAAGCTAGACAACCATTGA...........................................................................................23110.001000100000000
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................1918.0080240200000
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................2118.0080070100000
..................................................................................................................GATCATAAAGCTAGACAACCATTGAA..........................................................................................2618.0080080000000
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................2018.0080200301020
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2316.0060000600000
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................2116.0060020400000
..............................................................T--TGTGGTTGCAATTAGTTT...................................................................................................................................................1916.0060010500000
......................................................................................................................ATAAAGCTAGACAACCATTGACT.........................................................................................2316.0060060000000
......................................................................................................................ATAAAGCTAGACAACCATTGAACC........................................................................................2415.0050050000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGTT.......................................................................................2415.0050050000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................2515.0050040100000
.......................................................................................................................TAAAGCTAGACAACCATTGAAAA........................................................................................2315.0050050000000
......................................................................................................................ATAAAGCTAGACAACCATTGAACA........................................................................................2415.0050030200000
......................................................................................................................ATAAAGCTAGACAACCATTGATA.........................................................................................2315.0050020300000
.........................................................................................................................AAGCTAGACAACCATTGAAGTT.......................................................................................2215.0050050000000
......................................................................................................................ATAAAGCTAGACAACCATTC............................................................................................2015.0050050000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAT.........................................................................................2415.0050040100000
.........................................................................................................................AAGCTAGACAACCATTGAAGT........................................................................................2115.0050010400000
droPer2
AAAAAGTG-----ACAAAGTGTGTGTACACTCCACGAGTTG-------------ATACCTTAT--TGTGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------ACCTACCA------------CAACCACACCCACACCAACACCAACACCCATACCCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................221705.00705107154915222
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................211489.004894523630637
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................211181.0018117704000
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................231137.00137258100040
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................221107.001079737000
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................231101.0010120668052
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................20168.00683459020
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................24155.00552053000
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................23142.00423921000
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21131.00312902000
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................22130.00308119011
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................23124.00241716000
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................22118.00181007001
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................24116.0016907000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................23115.00152013000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................25114.0014507020
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................20111.00111001000
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................2119.009034002
..................................................................................TCTTTGGTCGTCCAGCCT..................................................................................................................................1818.008800000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................2418.008206000
.................................................................................TTCTTTGGTCGTCCAGCCTTAG...............................................................................................................................2218.008800000
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................2015.005302000
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................2215.005401000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................2315.005401000
...........................................................................................................TTTCTCTGATCATAAAGCTAGACAACC................................................................................................2714.004400000
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................2214.004003010
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................2314.004102010
..................................................................................TCTTTGGTCGTCCAGCCTTAGGG.............................................................................................................................2313.003300000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................2113.003002010
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................2013.003021000
...................................................................................CTTTGGTCGTCCAGCCTTA................................................................................................................................1913.003300000
.................................................................................TTCTTTGGTCGTCCAGCCT..................................................................................................................................1912.002200000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................2412.002200000
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2312.002002000
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................2212.002001001
..................................................................................TCTTTGGTCGTCCAGCCTT.................................................................................................................................1912.002200000
....................................................................................TTTGGTCGTCCAGCCTTAGGTG............................................................................................................................2212.002200000
...................................................................................CTTTGGTCGTCCAGCCTTAGGG.............................................................................................................................2211.001100000
....................................................................................TTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................2411.001001000
.....................................................................................................................CATAAAGCTAGACAACCATTGAT..........................................................................................2311.001001000
.................................................................................TTCTTTGGTCGTCCAGCCTTA................................................................................................................................2111.001100000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................2211.001001000
...................................................................................CTTTGGTCGTCCAGCCTT.................................................................................................................................1811.001100000
..................................................................................TCTTTGGTCGTCCAGCCC..................................................................................................................................1811.001100000
..............................................................T--TGTGGTTGCAATTAGTTT...................................................................................................................................................1911.001001000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................2311.001100000
........................................................................................GTCGTCCAGCCTTAGGTGA...........................................................................................................................1911.001001000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................2211.001000010
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................2211.001000010
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................2311.001001000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGA.............................................................................................................................2311.001010000
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................2111.001001000
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................2111.001001000
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................2211.001000010
...........................................................................................................................GCTAGACAACCATTGAAG.........................................................................................1811.001001000
.....................................................................................................................CATAAAGCTAGACAACCATTGAC..........................................................................................2311.001100000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAG..........................................................................................................................2611.001001000
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................2111.001010000
droWil2
GAAGAATTAACT--T-----------------------------TAACCA---AA--T----G--GCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT--TTAAGGAC-ATCAA---------------------------------TAGCAAAGTTCA-----SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................22147107.00471070297146590219
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................21127809.00278090149127479180
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................23110791.001079103501073521
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................2011716.0017160100168719
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................231596.005960205931
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................231538.005380405331
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................241496.004960004951
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................241280.002800002800
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................221238.002380002371
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................211171.001710901602
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................221169.001690001690
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................231167.001671001660
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................221140.001400001391
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................221113.001130101120
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................22174.00740006113
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................23154.0054000540
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20150.0050040460
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19143.0043010411
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................22140.0040000400
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................23137.0037010360
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................23130.0030020280
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................21128.0028000280
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21127.0027000270
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................22125.0025000250
.....................................................................................................................CATAAAGCTAGACAACCATTGAT..........................................................................................23123.0023000230
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................22121.0021000210
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................23121.0021010200
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................24118.0018000180
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................21118.0018000180
....................................................................................................................TCATAAAGCTAGACAACCATTGA...........................................................................................23116.0016010150
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................25116.0016000160
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................20114.0014000131
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................21113.0013000130
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20113.0013020110
............................................................................................................................................GTTCGTTGTGGCATTATCGCCA....................................................................22110.0010000100
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................24110.001001090
.......................................................................................................................TAAAGCTAGACAACCATTGAAAA........................................................................................2319.00900090
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................1818.00800080
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................1918.00800080
......................................................................................................................ATAAAGCTAGACAACCATTA............................................................................................2018.00800080
......................................................................................................................ATAAAGCTAGACAACCATTGAGA.........................................................................................2317.00700070
.............................................................................TAGTTTCTTTGGTCGTCCAGC....................................................................................................................................2117.00700070
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................2117.00700061
.........................................................T----G--GCGGGTTGCAATTAGTTT...................................................................................................................................................2017.00700070
......................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.......................................................................................2517.00700070
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGT...........................................................................................................................2415.00500050
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................1915.00500050
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................2215.00501040
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2515.00500050
......................................................................................................................ATAAAGCTAGACAACCATTGAAAG........................................................................................2414.00400040
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................2114.00401030
....................................................................................TTTGGTCGTCCAGCCTTAGGTG............................................................................................................................2214.00400040
......................................................................................................................ATAAAGCTAGACAACCATTT............................................................................................2014.00400040
.........................................................................................................................AAGCTAGACAACCATTGA...........................................................................................1814.00400040
.....................................................................................TTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2214.00400040
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................2414.00400040
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................2413.00301020
......................................................................................................................ATAAAGCTAGACAACCATGA............................................................................................2013.00300030
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA..........................................................................................................................2513.00300030
............................................................................................................................CTAGACAACCATTGAAGTTCGT....................................................................................2213.00300030
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................2413.00300030
....................................................................................................................TCATAAAGCTAGACAACCATTG............................................................................................2213.00300030
.............................................................................TAGTTTCTTTGGTCGTCCAGCC...................................................................................................................................2213.00310020
....................................................................................................................TCATAAAGCTAGACAACCATT.............................................................................................2113.00300030
......................................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................................................2412.00200020
...................................................................................CTTTGGTCGTCCAGCCTTAGGC.............................................................................................................................2212.00200020
......................................................A--T----G--GCGGGTTGCAATTAGTTT...................................................................................................................................................2112.00200020
......................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.......................................................................................2512.00200020
...................................................................................................................ATCATAAAGCTAGACAACCATTGAA..........................................................................................2512.00200020
.........................................................................................TCGTCCAGCCTTAGGTGA...........................................................................................................................1812.00200020
.........................................................................................................................AAGCTAGACAACCATTGAAGT........................................................................................2112.00200020
.......................................................................................................................TAAAGCTAGACAACCATTG............................................................................................1912.00200020
........................................................................................................................AAAGCTAGACAACCATTGAAA.........................................................................................2112.00200020
....................................................................................TTTGGTCGTCCAGCCTTAGGT.............................................................................................................................2112.00200020
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................2212.00200020
......................................................................................................................ATAAAGCTAGACAACCATTGAATA........................................................................................2411.00100010
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................2311.00100010
droVir3
TAACCGTC-----GCAATATATATATATAT---ATATAT-------------CTATATCATAT--AGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGG---C--------TATAATCTGACCATATATATAT-----------------------CTGAT-----SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................22118755.00187550039860010000008571000110330210234041811271346973466022023210167167123941424688331817100107990326102019819916220100001259382404139205
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................2313202.003202001160000000000213000000000011100001270423916476110067359565032732151271813110003210011002242821510000016058602535
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................2113014.003014003203000000000010000001011201110111403757821700000318455514454500016484142000710350000003336291321
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................2312797.002797011198600000000150000100000000000012202629944600000261822251728163110665000301541000013115700000058231377
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................201982.0098200157300000000000000000000102010002034430000112111210209261511129000436420000911240000002123241117
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................241957.009570005000000000200000001000010000198032163242358000003200010000110000320000030400000031102
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................231604.0060400025900000000010000000000000000001061131000022719141519253844130102021000008840000000351711107
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................221592.005920003820000000001000000000000000000605717140000187620427543400094500000121600000098773
......................................................................................................................ATAAAGCTAGACAACCA...............................................................................................171455.004550000000000000000000000000000000000000000004784841334058254126111470002800000000000000010000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................251330.003300004000000000000000000000001000017018699279000013110111200000000331000002200000001000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................231318.00318000160000000000000000000000000000190112346480000551409456391110000490000000400000001200
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................231277.002770009100000000010000000000000000000000010000016717119151212184750002670000020610000051012
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................241275.00275000140000000000000000000000000000305302317000003216222252315186834000440000001000000000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................231258.002580005800000000010000000000000000002013210000014171061118618121810170007190000000200000011201
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................241198.00198000500000000002000000000000000000401441001001711173814101153380008130000000000000000000
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................181149.00149000660000000000000000000000000000000220000018759107397302000800000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................221132.0013200040000000000000000000000000000503714100000120115334252321000650000004400000060200
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................221125.001250006700000000000000000000000000000000110000010130212401000011000003012000000240000
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................211123.0012300088000000000000000000000000000000014400000010000010000000060000000800000033301
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................221116.001163207000000000000000000000000000050518171700000623024143602000530001000000000000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................23197.009700084000000000000000000000000000010124100000000000000000000010000000100000010001
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................24195.009500033000000002001000000000002000000145200002414306323113000110000000301000011202
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................22171.007100040000000000000000000000000000010113000000320010001010000020000030400000061100
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................23152.00520102000000000000000000000000000000031400000325634121240000440000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................21147.00472300002000000000000000000000000010154101000000214041120000651000000000000000000
..............................................................T--AGAGGTTGCAATTAGTTT...................................................................................................................................................19136.00360000000000000100000000010000000030276600004120000000000000000000000000000010011
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20135.003500032000000000000000000000000000000010000000000000000000000000000000100000010000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................22132.003200024000000000000000000000000000000110300000010000000000000010000000000000010000
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................22124.002400013000000000000000000000000000000000000000100001001000000120000000200000011010
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................23121.00210008000000000000000000000000000000113300000000001000000000000000000400000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA..........................................................................................................................25121.002100000000000000000000000000000000100351100000000000000000000000000000000000010000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................24120.002000010000000000000000000000000000000010000000001111011000000300000000000000000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAG.........................................................................................24119.001900018000000000000000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20119.001900017000000000000000000000000000000000000000000000000000000010000000100000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................22118.00180009000000000000000000000000000010110200000001000000000000110000000000000001000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................24118.001800014000000000000000000000000000000001200000000001000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21118.00180002000000000000000000000000000000125200000010101000000000110000000000000010000
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19117.00170004000000000000000000000000000000102100000101000110110000100000000000000010100
.............................................................AT--AGAGGTTGCAATTAGTTT...................................................................................................................................................20115.00150001000000001000000000000000000000012700001000000000000000000000000100000001000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTC............................................................................................................................23115.00150001000000000000000000000000000010000000001810100100000000100000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTC............................................................................................................................24111.00110000000000000000000000000000000000000000000000110041000000400000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................22111.00110009000000000000000000000000000000000000000000000000000000020000000000000000000
......................................................................................................................ATAAAGCTAGACAACCAC..............................................................................................18110.001000010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................................................2319.0090009000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCT..................................................................................................................................1819.0090000000000000000000000000000000000000000000000000011020000300000000000002000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA..........................................................................................................................2619.0090000000000000000000000000000000000162000000000000000000000000000000000000000000
..................................................................................................................GATCATAAAGCTAGACAACCATTGAA..........................................................................................2618.0080006000000000000000000000000000000002000000000000000000000000000000000000000000
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................2417.0070007000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGACT.........................................................................................2317.0070005000000000000000000000000000000000000000000000000000000000000010000000010000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................2617.0070000000000000000000000000000010000000100000003000100000000000000000000000010000
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................2217.0070005000000000000000000000000000000000000000000000001000000000000000000000010000
....................................................................................TTTGGTCGTCCAGCCTTAGGTG............................................................................................................................2216.0060000000000000000000000000000000000000100000010000100001000110000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................2516.0060000000000000000000000000000000000010400000000000000100000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.......................................................................................2516.0060000000000000000000000000000000000000200000010001000020000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................2116.0060004000000000000000000000000000000000000000000000000000000020000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................2016.0060001000000000000000000000000000000000000000001000000001000200000000000000000100
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................2315.0050002000000000200000000000000000000000000000100000000000000000000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTCT...........................................................................................................................2515.0050000000000000000000000000000000000000000000000000100000000400000000000000000000
.................................................................AGAGGTTGCAATTAGTTT...................................................................................................................................................1815.0050000000000000000000000000000000000110300000000000000000000000000000000000000000
............................................................TAT--AGAGGTTGCAATTAGTTT...................................................................................................................................................2115.0050000000000000000000000000000000010001300000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA.........................................................................................................................2615.0050000000000000100000000000000000010021000000000000000000000000000000000000000000
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................1915.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2315.0050000000000000000000000000000000000020200000000100000000000000000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT...........................................................................................................................2515.0050001000000000000000000000000000000002000000000001010000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................................................2415.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ATCATAAAGCTAGACAACCATTGAA..........................................................................................2514.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................2114.0040002000000000000000000000000000000000000000000000000000000020000000000000000000
..................................................................................................................GATCATAAAGCTAGACAACCATTGA...........................................................................................2514.0040002000000000000000000000000000000010000000000000000000000010000000000000000000
........................................................................................................................AAAGCTAGACAACCATTGAAG.........................................................................................2114.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATC................................................................................................................3514.0040000000000000000000000000000000000000000000220000000000000000000000000000000000
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................2114.0040002000000000000000000000000000000000100000000000000000000010000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................2014.0040000000000000000000000000000000000010300000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAACA........................................................................................2414.0040000000000000000000000000000000000000000000000000011000000100000000100000000000
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................1914.0040002000000000000000000000000000000001100000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................................................2414.0040001000000000000000000000000000000000000000001100100000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAATC........................................................................................2414.0040003000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGAA.......................................................................................2413.0030000000000000000000000000000000000000000000120000000000000000000000000000000000
........................................................................................................................AAAGCTAGACAACCATTGAAA.........................................................................................2113.0030002000000000000000000000000000000000000000000000000000000000000010000000000000
.........................................................................................................................AAGCTAGACAACCATTGA...........................................................................................1813.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCT..................................................................................................................................1713.0030000000000000000000000000000000000000000000100000010000000000000000100000000000
......................................................................................................................ATAAAGCTAGACAACCATTGACC.........................................................................................2313.0030001000000000000000000000000000000000000000000000000000000000000000000000110000
.........................................................................................................................AAGCTAGACAACCATTGAAGTT.......................................................................................2213.0030001000000000000000000000000000000000100000000000100000000000000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTT............................................................................................................................2413.0030001000000000000000000000000000000000000000000010001000000000000000000000000000
droMoj3
AAAAGAAA-----ACAAAAT--------------------------------CTATATCGTAT--AGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCC--T--------ATATATAA------------TATATATATATAC------------ATCTA-----SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................221144666.00144666102689251419582
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................21149844.00498443271215471212
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................23144021.00440210173300422880
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................23117180.0017180038800167920
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................2219277.00927725130087620
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................2315791.00579101080056830
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................2015554.00555422100153401
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................2312097.00209701270019691
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................2411485.0014850620114220
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................2211470.0014700140014560
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................2311316.001316030013130
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................2111294.0012940240012700
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................1811163.001163000011630
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................2311056.0010560100010460
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................221549.0054908005410
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................221546.00546164004810
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................221544.00544017005270
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................241437.0043704004330
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................221430.00430028004020
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................201396.0039601003950
.....................................................................................................................CATAAAGCTAGACAACCATTGAAG.........................................................................................241328.0032802003260
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................201294.0029403002910
.......................................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................................................231218.0021800002180
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................221210.0021004002060
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................241209.00209033001751
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................241202.00202012000820
......................................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................................................241170.0017001001690
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................241155.0015501001540
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................241151.0015102001490
........................................................................................................................AAAGCTAGACAACCATTGAAG.........................................................................................211150.0015000001500
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................231149.00149031001180
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................251143.0014307900640
......................................................................................................................ATAAAGCTAGACAACCAC..............................................................................................182132.5026500002650
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................231131.0013106001250
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................191124.0012408001160
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................221122.0012200001220
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................191114.0011400001140
.....................................................................................................................CATAAAGCTAGACAACCATTGAT..........................................................................................231105.0010505001000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................221101.0010101000910
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................21193.009312900630
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................23184.00840500790
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................24183.00830200810
.....................................................................................................................CATAAAGCTAGACAACCATTGAC..........................................................................................23174.00740000740
..................................................................................................................GATCATAAAGCTAGACAACCATTGAA..........................................................................................26172.00720000720
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................22170.007001200580
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................21166.00660600600
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................19161.00610000610
......................................................................................................................ATAAAGCTAGACAACCATTGACT.........................................................................................23150.00500000500
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................23149.00490100480
.....................................................................................................................CATAAAGCTAGACAACCATTGAAT.........................................................................................24148.00480200460
....................................................................................................................TCATAAAGCTAGACAACCATTGA...........................................................................................23148.00480000480
...................................................................................................................ATCATAAAGCTAGACAACCATTGAA..........................................................................................25145.00450100440
........................................................................................................................AAAGCTAGACAACCATTGAAA.........................................................................................21142.00420000420
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................21142.00420200400
..................................................................................................................GATCATAAAGCTAGACAACCATTGA...........................................................................................25141.00410000410
.........................................................................................................................AAGCTAGACAACCATTGAAG.........................................................................................20141.00410100400
......................................................................................................................ATAAAGCTAGACAACCATTGATT.........................................................................................23141.00410100400
..................................................................................TCTTTGGTCGTCCAGCCTTAGGC.............................................................................................................................23140.00400000400
........................................................................................................................AAAGCTAGACAACCATTGAAGT........................................................................................22131.00310100300
..................................................................................................................GATCATAAAGCTAGACAACCATTGAAG.........................................................................................27129.00290000290
......................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.......................................................................................25128.00280000280
......................................................................................................................ATAAAGCTAGACAACCATTGAATC........................................................................................24128.00280000280
.......................................................................................................................TAAAGCTAGACAACCATTGAAGTT.......................................................................................24125.00250100240
.........................................................................................................................AAGCTAGACAACCATTGA...........................................................................................18124.00240000240
...........................................................................................................................GCTAGACAACCATTGAAG.........................................................................................18124.00240000240
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21123.00230200210
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................21122.00220400180
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................21122.00220170050
....................................................................................................................TCATAAAGCTAGACAACCATTGAAG.........................................................................................25121.00210000210
droGri2
AAAAA-TG-----ATAA----------------------------AT-CGATCTATATTTTAT--AGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGA---T-------TATATA-GTG----T------ATA---T------------------AAT-A-----SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................2122.00413
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................2221.00211
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................2320.50101
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................2120.50101
droAna3
AAAGTTTCAAATAATA----------------------------TAC-CA---------ATAT--AAAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGC---TTATTAAC-AAGAA--------------------------------------------T-----SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................2212705.00270512022712911157
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................2112622.00262279208043910410
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................2311441.001441191214198325
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................201739.0073927567137116
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................231313.003131326534100
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................221128.0012869722012
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................181125.0012501250000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................24181.00811727001
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................23163.00630630000
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................23153.005324110000
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19142.00422319000
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................21141.004112227000
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................23132.00321310000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................21131.00310256000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................23129.00290244010
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................24125.00254183000
......................................................................................................................ATAAAGCTAGACAACCAC..............................................................................................18125.00250250000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................25123.00234710200
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................24122.00221713100
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................22121.00210210000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................22121.00210201000
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20118.0018980001
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................24115.00153120000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................23114.0014770000
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................22113.0013751000
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................22112.00120111000
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................21111.0011065000
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................22111.0011191000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAG.........................................................................................2419.009081000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................2418.008071000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................................................2418.008071000
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................2017.007070000
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................2217.007133000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................2317.007132100
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................2117.007403000
......................................................................................................................ATAAAGCTAGACAACCATTT............................................................................................2016.006042000
.........................................................................................................................AAGCTAGACAACCATTGAAGTT.......................................................................................2215.005041000
........................................................................................................................AAAGCTAGACAACCATTGAAG.........................................................................................2115.005050000
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................1915.005050000
.........................................................................................................................AAGCTAGACAACCATTGAAGT........................................................................................2115.005023000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................2314.004040000
...........................................................................................................................GCTAGACAACCATTGAAG.........................................................................................1814.004040000
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................2114.004040000
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................2313.003030000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................2213.003021000
....................................................................................................................TCATAAAGCTAGACAACCATTGA...........................................................................................2313.003030000
..................................................................................................................GATCATAAAGCTAGACAACCATTGAA..........................................................................................2613.003030000
......................................................................................................................ATAAAGCTAGACAACCATTGACT.........................................................................................2313.003012000
...................................................................................................................ATCATAAAGCTAGACAACCATTGAA..........................................................................................2513.003030000
.....................................................................................................................CATAAAGCTAGACAACCATTGAT..........................................................................................2313.003021000
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................2113.003030000
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................2113.003300000
.........................................................................................................................AAGCTAGACAACCATTGA...........................................................................................1812.002020000
.......................................................................................................................TAAAGCTAGACAACCATTG............................................................................................1912.002200000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................2412.002020000
......................................................................................................................ATAAAGCTAGACAACCATTC............................................................................................2012.002020000
.......................................................................................................................TAAAGCTAGACAACCATTGAAAA........................................................................................2312.002020000
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................2011.001100000
......................................................................................................................ATAAAGCTAGACAACCATTGAACC........................................................................................2411.001010000
............................................................................................................................................GTTCGTTGTGGCAATTGCGGC.....................................................................2111.001010000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGTG.......................................................................................2511.001010000
..............................................................T--AAAGGTTGCAATTAGTTT...................................................................................................................................................1911.001010000
..................................................................................................................GATCATAAAGCTAGACAACCATTGA...........................................................................................2511.001010000
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................2411.001010000
........................................................................................................................AAAGCTAGACAACCATTG............................................................................................1811.001010000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................................................2411.001001000
...................................................................................................................ATCATAAAGCTAGACAACCATTGAG..........................................................................................2511.001010000
.....................................................................................................................CATAAAGCTAGACAACCATTGAC..........................................................................................2311.001010000
....................................................................................................................TCATAAAGCTAGACAACCATTGAAG.........................................................................................2511.001010000
droBip1
AAATAGTG-------------------------------------------------TTTCTT--AAAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGT---T---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATAAAGTG-----C---AGT---TGTA------ACAAGTTAATATATCCA---A-------ACAAGGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCT---T--------ATGA----------------------T------------------ATTCA-----SizeHit CountTotal NormTotal
No Reads
droFic1
AAA---------------------------------------------------------------ACGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCAC---T--------A------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGAGGCA-------------------------------------AT------------CCCC--AACGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAT---T-------TACAAGCCA------------ATA---C------------------AAAAA-----SizeHit CountTotal NormTotal
No Reads
droRho1
AAAGAAGA------C------------------------------AT------------CCAA--GACAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACAT---T--------ACAATTCA------------ATA---A------------------AAC-A-----SizeHit CountTotal NormTotal
No Reads
droBia1
AGTTAAAG----------------GTGC-------AAGTGGGCC-AT------------CAAA--CTCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------ACAAGCCA------------TA---------------------------A-----SizeHit CountTotal NormTotal
No Reads
droTak1
AGTTAAAG-----TTAAAGTTAATGTGA-------ATGTAGGCA-AT------------CTAA--CTGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T--------A------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AAATAAAG-------------------------------------AT------------CTAA--AACGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCAC---T---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AAATTAAA----------------------------------------------ATATTATGG--AGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCAC---C--------ACGAGTCA------------AGA--------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................221305216.0030521600004118186430792000000000000000100000000508020000101933003802000273100000000000000000411402010136556921784026812236227201121337714168011385617251600260012992710008000221201011000000120092946681060554585034310867094000000001004571024008727010505050020001230000140000001860000003601070313231285725732177100305000013892426201014202224011113842024134023035610761824167115244101551013101521865575011016230223282102114311622223362028653216334645252761221120
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................21152770.00527700000115437146000000000000200300000000198000001050132000021000011100000000000000000031022834294117721328200031702140218131011110325261901041498127501000001300001000000000053212483704121388111003211430000000010082001008703020720000019031600000000000050001000210362421491116124813900178000018341692111112002012111095040101321202251211110632695443243963147111326519843286230152401112170442711634012712064339932211872013110
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................23119460.001946000000052416600000000000000000000000043010000030300001301000000000000000000000000100076119243529977010001003005110202011015000951005800000000100000000000000015413313249420437121104073000000000000301000100010000000010002000000000000603000000000200012101280164004600004092421110000000200000300000000000301142751054212101132310098671292112024020000010581022002230021042292102020
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................24112143.00121430000107212682000000000000000000000000311101000000000000010001000000000000000000000000278914841981641930001013001002232430102931370003031011660000000000000000000000002179161173423138000000004000000000000020100001200100000000000100000100000000000000000010000020404000000001298200000000001000011000101000101000000000000000000001438500100000000000000401000100000000000010110
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................2014710.0047100000100153000000000000000000000000281500000001020000010000030000000000000000000020001941711402000001000001211000007300130402300000000100000000000000061641602416100000000000000000000001000101000100000020100000001000000000000000000000010201031002200006111200000000000010003000000000002100011130001000002043441406101000001000040009020000410004011230015270
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..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................241514.0051400000001140000000000000000000000000300000000000000000000000000000000000000000000008420191480000000000000000000002000150040000000000000000000000004577107516000000100000000000000000000000000000000000000000000000000020000000000000000000001000000001011000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
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......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................221475.00475000000212000000000000000000000000002000000000000000000000000000000000000000000000060109126010000000000000000005300040060000000000000000000000002376100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020000000000000000200000000000000000000000000000000310600000000000000000000000000000000020100000
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......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................241206.002060000000000000000000000000000000000000000000000000000000000000000000000000000000002311000000000000000000000000000000000000000000000000000000730711140000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000072010000000000000000000000000000001000000000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................221198.001980000000000000000000000000000000000100000000000000000000000000000000000000000000001784170000000000000000000000000300100000000000000000000000016718000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000360000000000000000000000000000000000000000000000000102800000000000000000000000000000001030000000
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.............................................................GG--AGCGGTTGCAATTAGTTT...................................................................................................................................................201178.001780000001200000000000000000000000000120000000000000000000000000000000000000000000000261100230000000000000000000012130002103000000000000000000000000228000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000058000000000000000000000000000000000000000000
............................................................TGG--AGCGGTTGCAATTAGTTT...................................................................................................................................................211170.0017000000000000000000000000000000000005000000000000000000000000000000000000000000000061001300000000000000000400160000400400000000000000000000000021525600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000069000000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................191147.0014700000000000000000000000000000000009000000000100000000000000000000000000000000000010350000000000000000000000000001000000000000000000000000001102660000000000000000000000000000000000000000001000000000000000030000000000000000000000000000001190001000000000000000000100000000000000100000001000371601000000000000000100000000000100000000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................221143.0014300000000000000000000000000000000000000000000000000000000000000000000000000000000061793100000000000000000000000004000000000000000000000000000426800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000035000000000020000000000000000000000000000000000000063800100000000000000000000000000000000000010
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................201116.001160000000000000000000000000000000000820000000000000000000000000000000000000000000000108200000000000000000000000000200000000000000000000000000000002000000000000010000000000000000000000000000000000000000000000000000000000000000001000000007300000000000000000000000000000000000000000000000001500000000000000010000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................231106.001060000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000038100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033000000000000000000000000000000000100010000000000080500000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................211103.00103000000000000000000000000000000000000000000000000000000000000000000000000000000000008500000000000000000000000000100100000000000000000000000016183010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000810000000000000000000001000000010000000000000000000030900000000000000000000000000000000000000000
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...................................................................................CTTTGGTCGTCCAGCCTTAGGTGC...........................................................................................................................24187.00870000000000000000000000000000000000001000000000000000000000000000000000000000000001725011100000000000000000000000000000000000000000000000000000178310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................23186.0086000000010000000000000000000000000000000000000000000000000000000000000000000000000913307000000000000000000000000010000000000000000000000000009121180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000
.................................................................AGCGGTTGCAATTAGTTT...................................................................................................................................................18175.0075000000000000000000000000000000000000000000000000000000000000000000000000000000000154041800000000000000000000980003101000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20170.0070000000021000000000000000000000000010000000000000000000000000000000000000000000000154163300000000000000000000000001002000000000000000000000000001000000000000000000000000000000001000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGCC..........................................................................................22169.00690000000000000000000000000000000000000000000000000000000000000000000000000000000001008000000000000000000000000000000000000000000000000000000113200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000053000000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGATA.........................................................................................23167.0067000000002000000000000000000000000000000000000000000000000000000000000000000000000103200000000000000000000000000000000000000000000000000000011016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000026200000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................25157.00570000000000000000000000000000000000100000000000000000000000000000000000000000000001600150000000000000000000010000100000000000000000000000000008790000000000000000000000100000000000000000000000000000000000000000000000000002010100000000001000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................19150.00500000000000000000000000000000000000000000000000000000000000000000000000000000000005200000000000000000000000000001000000000000000000000000000026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032200000000000000000000000000000000000000000
..........................................................TATGG--AGCGGTTGCAATTAGTTT...................................................................................................................................................23143.00430000000100000000000000000000000000000000000000000000000000000000000000000000000002000700000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT...........................................................................................................................25141.0041000000012000000000000000000000000000000000000000000000000000000000000000000000000934420000000000000000000030000201000000000000000000000000011500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAGA.........................................................................................23141.00410000000200000000000000000000000000000000000000000000000000000000000000000000000004001000000000000000000000000001000000000000000000000000000007000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000022200000000000000000000000000000000000000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................23140.00400000000001000000000000000000000000000000000000000000000000000000000000000000000000060200000000000000000000000000000000000000000000000000000138000000000000000000000000000000000000000000000000000000000000000000000000000100002010000000011000000000000000000000000000000000000000000000000011100000000000000000000000000000000000000010
......................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.......................................................................................25140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000171900000000000000000000000000000000000000000000100000000000000000000000000000000000001000100000000000000000000000000000000000000000200000000000003000000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA.........................................................................................................................26138.0038000000050000000000000000000000000000000001000000000000000000000000000000000000000840010000000000000000000000000200000000000000000000000000018300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTTT...........................................................................................................................24136.00360000000000000000000000000000000000000000000000000000000000000000000000000000000002330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................22135.00350000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000041000000000000000100000000000000000000100000000000022200000000000000000000000000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA..........................................................................................................................26135.0035000000010000000000000000000000000000000000000000000000000000000000000000000000000971100000000000000000000000000000500000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000100000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGG...........................................................................................................................24133.0033000000131000000000000000000000000000000000000000000000000000000000000000000000000521080000000000000000000002000200000000000000000000000000011210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAT..........................................................................................23133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000029160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000100000000000000000000000003000000000000000000000000000000000000000000
...........................................................ATGG--AGCGGTTGCAATTAGTTT...................................................................................................................................................22131.00310000000000000000000000000000000000100000000000000000000000000000000000000000000006000000000000000000000000000001003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTT............................................................................................................................23130.00300000000200000000000000000000000000000000000000000000000000000000000000000000000006153000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................18128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000002000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000014500000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTA............................................................................................................................23127.00270000002400000000000000000000000000000000000000000000000000000000000000000000000001240000000000000000000000030000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGT..............................................................................................................................22125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000008131000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGC.............................................................................................................................22124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000100000000000000000000000005701000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
droSim2
AACTTCAA----------------------------------------------ATATTCTGT--GGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCAC---C--------ACAAGTCA------------AGA---A------------------ATCAA-----SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................22167041.00670410019911842819111232322303137373719000
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................21125945.002594500814443789551359787893324303000
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................2312764.002764008114001321500895025504000
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................2011723.001723013850411772602029702000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2511292.001292002000117463260301500000
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................2111188.00118840110810000273211500000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2411139.00113900700015354350616400000
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................2311061.0010610020080341210146048900000
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................221759.007591071500000101901400000
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................231524.00524003490001078870900000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................231389.00389313460003091401111000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................241347.003471028510001292001000000
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................211243.002430023600010210300000
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................221225.002253010500030475001700000
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................221207.00207003800020443109200000
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................231172.0017200700011825003001000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................231139.0013900470000041440700000
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................21194.009400070000363701400000
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................22172.00720001000139260500000
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................20157.0057005400000110100000
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19148.00480000020025170400000
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................22140.00400020000014170700000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................24137.0037005000001980302000
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................18135.0035002033000000000000
..................................................................................TCTTTGGTCGTCCAGCCT..................................................................................................................................18129.0029002900000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................21128.0028001600000240600000
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20127.0027000200001370500000
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................20126.0026102300000010100000
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................22125.0025002100000220000000
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20122.00220000000012100000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGA.............................................................................................................................23122.0022001700000230000000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................22119.001900100001480500000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................21118.0018000000001001700000
...................................................................................CTTTGGTCGTCCAGCCTTAGGC.............................................................................................................................22117.0017001700000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................24115.001500000000780000000
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................22114.0014001000002101000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGG.............................................................................................................................22113.0013001300000000000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................23113.001300000000430600000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................22112.001200010100230500000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................2319.00900000000130500000
.............................................................................................................................TAGACAACCATTGAA..........................................................................................1519.00900000000090000000
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................2118.00800000000210500000
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................1918.00800000001240100000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................2418.00800110000100500000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGG.............................................................................................................................2317.00700700000000000000
...........................................................................................................................GCTAGACAACCATTGAA..........................................................................................1717.00700000000250000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................2216.00600000000230100000
...................................................................................CTTTGGTCGTCCAGCCTTAGGA.............................................................................................................................2216.00600500000000100000
.......................................................................................................................TAAAGCTAGACAACCATTG............................................................................................1916.00600010000220100000
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2316.00600100000120200000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGG...........................................................................................................................2515.00500500000000000000
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................1915.00500000000220100000
..................................................................................TCTTTGGTCGTCCAGCCTT.................................................................................................................................1915.00500500000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGC.............................................................................................................................2315.00500500000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGT...........................................................................................................................2415.00500100000000400000
..........................................................................................................................AGCTAGACAACCATTGAA..........................................................................................1815.00500000000320000000
............................................................................................................................CTAGACAACCATTGAA..........................................................................................1614.00400000000310000000
...................................................................................CTTTGGTCGTCCAGCCTTA................................................................................................................................1914.00400400000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.......................................................................................2514.00400100000020001000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTT............................................................................................................................2314.00400400000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAC...............................................................................................................................2114.00400400000000000000
......................................................................................................................ATAAAGCTAGACAACCATTGAACA........................................................................................2414.00400300000010000000
....................................................................................TTTGGTCGTCCAGCCTTAGGTG............................................................................................................................2214.00400400000000000000
.............................................................................TAGTTTCTTTGGTCGTCCAGC....................................................................................................................................2114.00400300000010000000
...................................................................................CTTTGGTCGTCCAGCCTT.................................................................................................................................1813.00300300000000000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGG...........................................................................................................................2413.00300200000000100000
.........................................................................................................................AAGCTAGACAACCATTGA...........................................................................................1813.00300000000210000000
......................................................................................................................ATAAAGCTAGACAACCA...............................................................................................1713.00300000000210000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................2312.00200000000110000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGACT.........................................................................................................................2612.00200200000000000000
........................................................................................................................AAAGCTAGACAACCATTGAAA.........................................................................................2112.00200100000010000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................................................2412.00200000000020000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGC...........................................................................................................................2512.00200000000020000000
..................................................................................TCTTTGGTCGTCCAGCCTC.................................................................................................................................1912.00200200000000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAC..........................................................................................................................2612.00200000200000000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGT..............................................................................................................................2212.00200200000000000000
droSec2
AACTTCAA----------------------------------------------ATATTCTGT--GGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCAC---C--------ACAAGTCA------------GGA---A------------------ATCAA-----SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................22119825.00198255411218407865
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................21110325.001032518039901241
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................2311484.001484322141238
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................2311312.001312220125139
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................2011212.001212131118315
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................241431.00431204254
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................221322.003222031010
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................251210.00210102054
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................221129.00129101262
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................211105.00105150864
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................231103.0010320974
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................21191.009110900
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................23163.006300621
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................22157.005750520
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................23151.005110491
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19149.004950431
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................22134.003410303
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................22133.003300303
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................24131.003110300
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21130.003030270
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................23128.002800262
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20128.002830250
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20127.002760210
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................23126.002600251
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................23122.002200202
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................22122.002200220
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................20121.002100210
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................23121.002140170
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................24119.001900163
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................22117.001700161
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................21116.001610141
..............................................................T--GGCGGTTGCAATTAGTTT...................................................................................................................................................19116.001610132
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................24115.001500150
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGT...........................................................................................................................24113.001300130
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................21113.001300121
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................22112.001200111
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................19110.001000100
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................2118.0080071
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................2417.0070070
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT...........................................................................................................................2516.0060060
......................................................................................................................ATAAAGCTAGACAACCATTA............................................................................................2015.0050050
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................2215.0050050
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................1815.0050050
.............................................................GT--GGCGGTTGCAATTAGTTT...................................................................................................................................................2014.0041030
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................2614.0040040
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................2214.0040040
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................2114.0040040
........................................................................................................................AAAGCTAGACAACCATTG............................................................................................1814.0040040
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................1913.0030030
.......................................................................................................................TAAAGCTAGACAACCATTG............................................................................................1913.0030030
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................2013.0031020
..................................................................................TCTTTGGTCGTCCAGCCTTAGGA.............................................................................................................................2313.0030030
........................................................................................................................AAAGCTAGACAACCATTGAAG.........................................................................................2113.0030030
........................................................................................................................AAAGCTAGACAACCATTGAAA.........................................................................................2113.0030030
......................................................................................................................ATAAAGCTAGACAACCATTGACC.........................................................................................2312.0020020
...................................................................................................................ATCATAAAGCTAGACAACCATTGAA..........................................................................................2512.0020020
......................................................................................................................ATAAAGCTAGACAACCATGA............................................................................................2012.0020020
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................2412.0020020
....................................................................................TTTGGTCGTCCAGCCTTAGGT.............................................................................................................................2112.0021010
....................................................................................................................TCATAAAGCTAGACAACCATTGA...........................................................................................2312.0020020
.........................................................................................................................AAGCTAGACAACCATTGAAGTT.......................................................................................2211.0010010
.....................................................................................................................CATAAAGCTAGACAACCATTGAT..........................................................................................2311.0010010
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................2411.0010001
....................................................................................................................TCATAAAGCTAGACAACCATTGAAA.........................................................................................2511.0010010
...................................................................................CTTTGGTCGTCCAGCCTTAGGTT............................................................................................................................2311.0010010
droYak3
AATTAATC----------------------------------------------AGATACTGG--GGCAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATT--------ACGG---------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................22143469.004346903040260314932340000
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................23113202.00132020131143617520100000
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................21111677.00116770279630200041330000
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................2313785.0037850134533282100000
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................2011936.0019360417561740200000
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................2211589.0015890113462420000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................231988.0098800941460100000
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................231701.0070100678230000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................241574.0057400509650000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................231559.0055900483760000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................251375.0037501673070000000
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................181362.003620036200000000
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................221357.003570035250000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................241261.0026100452160000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................231255.002550125040000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................241254.0025401201520000000
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................211246.002460123780000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................221245.0024511202410000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................231120.0012000104160000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................221104.001040066370100000
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................21197.00973053410000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................24190.0090008910000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................................................23188.0088008800000000
......................................................................................................................ATAAAGCTAGACAACCAC..............................................................................................18187.0087008700000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................................................24183.0083008210000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................23183.00830147350000000
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................22182.00820061210000000
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20175.0075007500000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................24174.0074006950000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................22170.0070026530000000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................22163.0063006030000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAG.........................................................................................24156.0056005420000000
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20147.0047014420000000
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19139.0039002971200000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................22139.0039003360000000
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21138.0038023060000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAT.........................................................................................22137.0037013240000000
..................................................................................................................GATCATAAAGCTAGACAACCATTGAA..........................................................................................26127.0027002700000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................22126.0026002510000000
........................................................................................................................AAAGCTAGACAACCATTGAAG.........................................................................................21123.0023002210000000
...................................................................................CTTTGGTCGTCCAGCCTTAGGC.............................................................................................................................22122.0022002200000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................24120.0020002000000000
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................19115.0015001410000000
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................21115.0015001050000000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................................................23115.0015001230000000
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................23112.0012001110000000
........................................................................................................................AAAGCTAGACAACCATTGAAGT........................................................................................22112.0012001020000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGC.............................................................................................................................23112.0012001200000000
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................24112.0012001200000000
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................19110.0010001000000000
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................20110.001000640000000
..............................................................G--GGCAGTTGCAATTAGTTT...................................................................................................................................................19110.001000460000000
.........................................................................................................................AAGCTAGACAACCATTGAAGT........................................................................................21110.001000820000000
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2319.00900180000000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................2119.00900540000000
......................................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................................................2419.00900900000000
......................................................................................................................ATAAAGCTAGACAACCATTGACT.........................................................................................2318.00800800000000
...........................................................................................................................GCTAGACAACCATTGAAG.........................................................................................1817.00700700000000
........................................................................................................................AAAGCTAGACAACCATTGAAA.........................................................................................2117.00700700000000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAT.........................................................................................2417.00700700000000
....................................................................................................................TCATAAAGCTAGACAACCATTGA...........................................................................................2316.00600600000000
..................................................................................................................GATCATAAAGCTAGACAACCATTGA...........................................................................................2516.00600600000000
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................2016.00610410000000
.........................................................................................................................AAGCTAGACAACCATTGAAG.........................................................................................2016.00600510000000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT..........................................................................................................................2616.00600420000000
droEre2
AAACAAA-----------------------------------------------AGATACTGT--AGCGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCAC---C--------AAGAGTTA-----------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
......................................................................................................................ATAAAGCTAGACAACCATTGAA..........................................................................................22120463.0020463148616794021641540
......................................................................................................................ATAAAGCTAGACAACCATTGA...........................................................................................2115807.00580748743841926360
......................................................................................................................ATAAAGCTAGACAACCATTGAAG.........................................................................................2314440.00444029734780662120
......................................................................................................................ATAAAGCTAGACAACCATTGAAA.........................................................................................2311617.0016179013600164120
......................................................................................................................ATAAAGCTAGACAACCATTG............................................................................................201727.0072736596092030
.......................................................................................................................TAAAGCTAGACAACCATTGAAG.........................................................................................221517.0051743376097010
.......................................................................................................................TAAAGCTAGACAACCATTGAA..........................................................................................211185.0018572100013000
.....................................................................................................................CATAAAGCTAGACAACCATTGAA..........................................................................................231140.00140413303000
......................................................................................................................ATAAAGCTAGACAACCATTGAC..........................................................................................221133.00133012607000
......................................................................................................................ATAAAGCTAGACAACCATTGAAC.........................................................................................231123.00123411009000
......................................................................................................................ATAAAGCTAGACAACCATTGAAT.........................................................................................23199.0099581013000
......................................................................................................................ATAAAGCTAGACAACCAT..............................................................................................18188.008808800000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................25151.0051126031110
..................................................................................TCTTTGGTCGTCCAGCCTTAGG..............................................................................................................................22148.00482313012000
........................................................................................................................AAAGCTAGACAACCATTGAA..........................................................................................20146.004614401000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................................................23143.0043131011000
.....................................................................................................................CATAAAGCTAGACAACCATTGA...........................................................................................22141.004104001000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................................................24141.004113406000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................24138.00381115012000
.......................................................................................................................TAAAGCTAGACAACCATTGA...........................................................................................20136.0036161307000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................24133.003353024010
..................................................................................TCTTTGGTCGTCCAGCCTTAG...............................................................................................................................21131.003173021000
.......................................................................................................................TAAAGCTAGACAACCATTGAAA.........................................................................................22129.002932303000
...................................................................................CTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................22127.002726018010
......................................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................................................24124.002421903000
......................................................................................................................ATAAAGCTAGACAACCATTGAT..........................................................................................22123.002321407000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................................................24123.002302102000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAG.........................................................................................24121.002102001000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGT.............................................................................................................................23119.00193709000
......................................................................................................................ATAAAGCTAGACAACCATT.............................................................................................19119.00197903000
........................................................................................................................AAAGCTAGACAACCATTGAAG.........................................................................................21116.001611401000
...................................................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................................................23116.00168602000
......................................................................................................................ATAAAGCTAGACAACCATTGG...........................................................................................21111.00115501000
...................................................................................CTTTGGTCGTCCAGCCTTAGG..............................................................................................................................21111.00117202000
......................................................................................................................ATAAAGCTAGACAACCAC..............................................................................................18210.502102100000
.....................................................................................................................CATAAAGCTAGACAACCATTGAAA.........................................................................................24110.001001000000
..................................................................................................................GATCATAAAGCTAGACAACCATTGAA..........................................................................................2618.0080800000
........................................................................................................................AAAGCTAGACAACCATTGA...........................................................................................1918.0080701000
.......................................................................................................................TAAAGCTAGACAACCATTGAAC.........................................................................................2218.0080602000
....................................................................................................................TCATAAAGCTAGACAACCATTGAA..........................................................................................2418.0080701000
......................................................................................................................ATAAAGCTAGACAACCATTGAG..........................................................................................2217.0070304000
......................................................................................................................ATAAAGCTAGACAACCATTGACA.........................................................................................2317.0070700000
......................................................................................................................ATAAAGCTAGACAACCATTC............................................................................................2017.0070601000
...................................................................................CTTTGGTCGTCCAGCCTTAG...............................................................................................................................2016.0061005000
..................................................................................TCTTTGGTCGTCCAGCCTTA................................................................................................................................2015.0051103000
....................................................................................TTTGGTCGTCCAGCCTTAGGTGA...........................................................................................................................2315.0052201000
.....................................................................................................................CATAAAGCTAGACAACCATTG............................................................................................2114.0040400000
......................................................................................................................ATAAAGCTAGACAACCATTGT...........................................................................................2114.0040301000
........................................................................................................................AAAGCTAGACAACCATTGAAGT........................................................................................2214.0041201000
......................................................................................................................ATAAAGCTAGACAACCATTGC...........................................................................................2114.0040004000
.........................................................................................................................AAGCTAGACAACCATTGAA..........................................................................................1914.0040400000
..................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA..........................................................................................................................2613.0032001000
.......................................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................................................2313.0030300000
..................................................................................................................GATCATAAAGCTAGACAACCATTGA...........................................................................................2513.0030300000
......................................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................................................2413.0030201000
..................................................................................................................GATCATAAAGCTAGACAACCATTGAAG.........................................................................................2712.0020200000
.........................................................................................................................AAGCTAGACAACCATTGAAA.........................................................................................2012.0020200000

Generated: 10/20/2015 at 10:18 PM