ID:

dps-mir-309

 Coordinate:

3:12677889-12677956 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.3 -23.2 -23.2

Flybase annnotation

pre_miRNA [Dpse\mir-309-RM]; utr3 [utr3_minus_3620]; miRNA [Dpse\miR-309-RA]

No Repeatable elements found

Sense Strand Reads

GTGCCCGAAGTGAAGGAGAAAAAGAAAGAAAAACAAACTATCTCGGAACTATTATACGATAAACTTTGTTCAGTTTTGCCAACTTGCTTGCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTAAGCGATCAGCGAGCGTCTCAGCGCACATTGTGAACGACGAT

*****************************************...(((....(((((.(((((((((((((((((.((((..........)))).))))))))))))))))).)))))))).........*************************************** 		Read size # Mismatch Hit Count Total Norm Total M059

embryo

 GSM343916

embryo

 M040

female body

 V112

male body		 M062

head

 SRR902011

testis
............................................................................................GCACTGGGTGAAGTTTGTCTTA...................................................... 22 0 1 2449.00 2449 1240 1132 77 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTT....................................................... 21 0 1 480.00 480 295 159 25 1 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTAA..................................................... 23 1 1 166.00 166 59 98 7 2 0 0
............................................................................................GGACTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 62.00 62 62 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCT........................................................ 20 0 1 39.00 39 29 4 6 0 0 0
...........................................................................................AGCACTGGGTGAAGTTTGTCTT....................................................... 22 0 1 35.00 35 26 8 1 0 0 0
............................................................................................GCATTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 32.00 32 29 3 0 0 0 0
............................................................................................GCACTGGGCGAAGTTTGTCTTA...................................................... 22 1 1 26.00 26 19 7 0 0 0 0
............................................................................................GCACTGGGTGCAGTTTGTCTTA...................................................... 22 1 1 23.00 23 5 18 0 0 0 0
...........................................................................................AGCACTGGGTGAAGTTTGTCTTA...................................................... 23 0 1 17.00 17 8 7 2 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTC....................................................... 21 1 1 16.00 16 15 1 0 0 0 0
............................................................................................GGACTGGGTGAAGTTTGTCTT....................................................... 21 1 1 14.00 14 14 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTT...................................................... 22 1 1 13.00 13 3 9 1 0 0 0
............................................................................................GCACTGGGTGGAGTTTGTCTTA...................................................... 22 1 1 12.00 12 0 12 0 0 0 0
............................................................................................TCACTGGGTGAAGTTTGTCGTA...................................................... 22 2 1 12.00 12 7 4 0 0 1 0
........................................................CGATAAACTTTGTTCAGTTTTG.......................................................................................... 22 0 1 12.00 12 5 4 3 0 0 0
............................................................................................GTACTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 12.00 12 12 0 0 0 0 0
...........................................................................................AGCACTGGGTGAAGTTTGTCT........................................................ 21 0 1 11.00 11 7 3 1 0 0 0
............................................................................................GCATTGGGTGAAGTTTGTCTT....................................................... 21 1 1 11.00 11 11 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTAT..................................................... 23 0 1 10.00 10 4 5 1 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTAC..................................................... 23 1 1 9.00 9 3 6 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTAAA.................................................... 24 1 1 8.00 8 3 5 0 0 0 0
............................................................................................GCACTGGGCGAAGTTTGTCTT....................................................... 21 1 1 8.00 8 8 0 0 0 0 0
.............................................................................................CACTGGGTGAAGTTTGTCTTA...................................................... 21 0 1 8.00 8 1 0 7 0 0 0
............................................................................................GCACTGGGTGAAGCTTGTCTTA...................................................... 22 1 1 8.00 8 4 4 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCC........................................................ 20 1 1 8.00 8 8 0 0 0 0 0
.......................................................ACGATAAACTTTGTTCAGTTTT........................................................................................... 22 0 1 7.00 7 5 1 1 0 0 0
............................................................................................GCACTGGGTGAAGTTTGCCTTA...................................................... 22 1 1 7.00 7 3 4 0 0 0 0
............................................................................................GCACTGTGTGAAGTTTGTCTTA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
............................................................................................GCACTTGGTGAAGTTTGTCTTA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0
............................................................................................GCACTGGGGGAAGTTTGTCTTA...................................................... 22 1 1 7.00 7 4 3 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTC...................................................... 22 1 1 6.00 6 6 0 0 0 0 0
............................................................................................GCACTGGGAGAAGTTTGTCTTA...................................................... 22 1 1 6.00 6 1 5 0 0 0 0
............................................................................................TCACTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 6.00 6 4 2 0 0 0 0
............................................................................................GCACTGGGTGAAGATTGTCTTA...................................................... 22 1 1 6.00 6 1 5 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTG...................................................... 22 1 1 5.00 5 0 5 0 0 0 0
........................................................CGATAAACTTTGTTCAGTTTT........................................................................................... 21 0 1 5.00 5 3 2 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGGCTTA...................................................... 22 1 1 5.00 5 1 4 0 0 0 0
............................................................................................GCACTGGGTGTAGTTTGTCTTA...................................................... 22 1 1 5.00 5 0 5 0 0 0 0
............................................................................................GAACTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 5.00 5 0 5 0 0 0 0
............................................................................................GCACCGGGTGAAGTTTGTCTTA...................................................... 22 1 1 4.00 4 1 3 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTC......................................................... 19 0 1 4.00 4 4 0 0 0 0 0
...........................................................................................CGCACTGGGTGAAGTTTGTCTTA...................................................... 23 1 1 4.00 4 3 1 0 0 0 0
............................................................................................GCACTGGGTGACGTTTGTCTTA...................................................... 22 1 1 4.00 4 0 4 0 0 0 0
............................................................................................GCACTGGGTGAAATTTGTCTTA...................................................... 22 1 1 4.00 4 2 2 0 0 0 0
...........................................................................................ATCACTGGGTGAAGTTTGTCT........................................................ 21 1 1 4.00 4 4 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTTTCTTA...................................................... 22 1 1 4.00 4 2 1 0 1 0 0
............................................................................................GCACTGGGTAAAGTTTGTCTTA...................................................... 22 1 1 4.00 4 3 1 0 0 0 0
............................................................................................GCACTAGGTGAAGTTTGTCTTA...................................................... 22 1 1 3.00 3 1 2 0 0 0 0
......................................................TACGATAAACTTTGTTCAGTTTT........................................................................................... 23 0 1 3.00 3 3 0 0 0 0 0
............................................................................................GCACTGGGTGCAGTTTGTCTT....................................................... 21 1 1 3.00 3 1 2 0 0 0 0
............................................................................................GCACTGGGTGAAGGTTGTCTTA...................................................... 22 1 1 3.00 3 1 2 0 0 0 0
............................................................................................GCACTGGATGAAGTTTGTCTTA...................................................... 22 1 1 3.00 3 0 3 0 0 0 0
............................................................................................GCACTGGGTGAAGTCTGTCTTA...................................................... 22 1 1 3.00 3 0 3 0 0 0 0
............................................................................................GCCCTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 3.00 3 3 0 0 0 0 0
............................................................................................GCACTGGGTGAGGTTTGTCTTA...................................................... 22 1 1 3.00 3 0 3 0 0 0 0
............................................................................................TCACTGGGTGAAGTTTGTCGTC...................................................... 22 3 1 3.00 3 2 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTCGTCTTA...................................................... 22 1 1 3.00 3 2 1 0 0 0 0
............................................................................................GCAATGGGTGAAGTTTGTCTTA...................................................... 22 1 1 3.00 3 0 3 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTTTTA...................................................... 22 1 1 3.00 3 1 2 0 0 0 0
............................................................................................ACACTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 3.00 3 1 2 0 0 0 0
.............................................................................................CACTGGGTGAAGTTTGTCTT....................................................... 20 0 1 3.00 3 1 0 2 0 0 0
............................................................................................GCATTGGGTGAAGTTTGTCTTAA..................................................... 23 2 1 3.00 3 3 0 0 0 0 0
............................................................................................GCACTTGGTGAAGTTTGTCTT....................................................... 21 1 1 3.00 3 3 0 0 0 0 0
.......................................................ACGATAAACTTTGTTCAGTTTC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................CGCACTGGGTGAAGTTTGTCTT....................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGAGTGAAGTTTGTCTTA...................................................... 22 1 1 2.00 2 0 2 0 0 0 0
..............................................................................................ACTGGGTGAAGTTTGTCTTA...................................................... 20 0 1 2.00 2 2 0 0 0 0 0
............................................................................................GGATTGGGTGAAGTTTGTCTTA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGTGCAGCTTGGCTTA...................................................... 22 3 1 2.00 2 0 2 0 0 0 0
.............................................................................................CACTGGGTGAAGTTTGTCTTAT..................................................... 22 0 1 2.00 2 1 1 0 0 0 0
............................................................................................GCACTGGGCGAAGTTTGTCTTAA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
............................................................................................GCGCTGGGTGAAGTTTGTCTT....................................................... 21 1 1 2.00 2 0 2 0 0 0 0
............................................................................................TCACTGGGTGAAGTTTGTCGT....................................................... 21 2 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGGGAAGTTTGTCTT....................................................... 21 1 1 2.00 2 1 1 0 0 0 0
............................................................................................GCACTGGGTGACGTTTGGCTTA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTGATGTTTGTCTTA...................................................... 22 1 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTGAGGTTTGTCTT....................................................... 21 1 1 2.00 2 1 1 0 0 0 0
............................................................................................GCACTGGGCGAAGTTTGGCTTA...................................................... 22 2 1 2.00 2 1 1 0 0 0 0
............................................................................................GCACTGGGTGGAGTTTGTCTTAA..................................................... 23 2 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTGTTA...................................................... 22 1 1 2.00 2 0 2 0 0 0 0
............................................................................................GGACTGGGTGAAGTTTGTCTTAA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGTGTAGGTTGTCTTA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTGCTGTTTGTCTTA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................................................GTACTGGGTGAAGTTTGTCTT....................................................... 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGGGAAGTTTGTCTTAA..................................................... 23 2 1 2.00 2 1 1 0 0 0 0
............................................................................................GCACTGGGTGCAGTTTCTCTTA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTTAAGTTTGTCTTA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGAGAAGCTTGTCTTA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTGTAGTTTGTCTT....................................................... 21 1 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTGGAGTTTGTCTT....................................................... 21 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................AGCACTGGGTGAAGTTTGTCC........................................................ 21 1 1 2.00 2 2 0 0 0 0 0
............................................................................................GCACTGGGTGACGTTTTTCTTA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................................................GCACTGGGTCGAGCTTGTCTTAT..................................................... 23 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GTACTGGGTGAAGTTTGACTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTAGTCTGC...................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGACGTTTGTCTTTA..................................................... 23 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGGAGTTTGTCTTT...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTTTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCGCTGGGTGAAGTTTGTATT....................................................... 21 2 1 1.00 1 0 1 0 0 0 0
.......................................................ACGATAAACTTTGTTCAGCTTTGC......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATCACTGGGTGAAGTTTGTCGTT...................................................... 23 3 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGCGAAGTTTGTCT........................................................ 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GAACTGGGTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGCGCAGTTTGTCTT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGCGAAGTTTGTCTTC...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCAATGGGTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GAACTGGGTGAAGTTTGTGTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGCGAAGATTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GAACTGGGTGAAGTTTGTCT........................................................ 20 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................CTGGGTGAAGTTTGTCTTA...................................................... 19 0 1 1.00 1 0 0 1 0 0 0
............................................................................................GCACTGGGCGGAGGTTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGCTTGTCTGA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GAACTGGGTGAAGTTTGTATT....................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCAGTGGGTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAATTTTGTCTTA...................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................AGCTCTGGGTGAAGTTTGTCT........................................................ 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTATTG...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGTTGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................ATACTGGGTGAAGTTTGTCTT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GGACTGGGTGAAGTTTGTCT........................................................ 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCCCTGGGTGACGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
......................................................TACGATAAACTTTGTTCAGTTT............................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................AGCACTGGGTGAAGTTTGTATTA...................................................... 23 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGCGGAATTTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGTGTGCAGTTTGTCTT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCCCTGGGTCAAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTCGGTGAAGTTTGACTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCCCTGGGTGAAGTTTGTCGTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTATCTTA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................CTCACTGGGTGAAGTTTGTCTT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AGCACTGGGTGAAGTTTGTC......................................................... 20 0 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACAGGGTGCAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGATGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGATGTTTGTCTG....................................................... 21 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGAACTGGGTGAAGTTTGTCTTA...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTCGGTGAAGTTTGTTTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................ACACTGGGTGAAGTTTGTCGTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GGACTGGGTGAAGTTTGTCTTAC..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGCCGTTTGGCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGCAGCTTGCCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATCACTGGGTGAAGTTTGTCTTAAA.................................................... 25 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGATGTTTGTGTT....................................................... 21 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTAAG.................................................... 24 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................CCTGGGTGAAGTTTGTCTTA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGCGAAGATTGTATTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................ACAATGGGTGCAGTTTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTAAAA................................................... 25 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCTCTGGGTGAAGTTTGGATTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
........................................................CGATAAACTTTGTTCAGTTT............................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1
............................................................................................GCACTGGGTGCAGTTTGCCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GGACTGGGTGAAGGTTGTCTTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGTATGCAGTTTGTCTTA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGGAGGTTGGCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................CCACTGGGTCAAGTCTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGCCGAAGTTTGTCTTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGCTGAAGTTTGTCTTA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCATA...................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATCACTGGGTGAAGTTTGTCTTA...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGCCGCAGTTTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGACGTTCGTATTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGCAGGTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGCACTGGGTGAAGCGTGTCTT....................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGGGAAGTTTGTCTTC...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAGGTTTGTCTTAA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAGGTTTGTATTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAACTTTGTCTTT...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCATTGGGTGGAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTCA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGGCTTAA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGGAGTTTATCTGA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGTAGTTTGTCT........................................................ 20 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGCGGAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTCGGTGAAGTTTGTCTTA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGAACTGGGTGAAGTTTGTCTT....................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCCCTGGGCGCAGTTTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTATT.................................................... 24 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGATTGTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................ATCTCTGGGTGAAGTTTGTCT........................................................ 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................AGCACTGGGTGAAGTTTGTCTTT...................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCATTGGGCGAAGTTTGTCTTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGTAGTTGGGCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATAACTGGGTGAAGTTTGTCTT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCTCTGGGTGAAGTTTGTCTTTC..................................................... 23 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCTCTGGGGGAAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTCAAGTTTGTCTTAA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGAAGATTGTGTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACGGGGTGAAGTTTGTCTTA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGCAGTTTTTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGATGTGTGTCTTAA..................................................... 23 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCAATGGGTGGAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGCAGCTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAGGTTTGTCTTC...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACCGGGTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGGTTGTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGATGTTTGTTTTAT..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCTCTGGGTGAAGTTTGTCTTG...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
........................................................CTATAAACTTTGTTCAGTTTTG.......................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GTACTGGGTGAAGTTTGTCTTAA..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTGAA.................................................... 24 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGGAGTTTGTGTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGTAGTTTGTCTTG...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGGTGAAGGTTGTCTGA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGATGAAGTTTGTCTTC...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGTCGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGTTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGCTTGTCTTAA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGCGGAGCTTGTCTT....................................................... 21 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGGGAAGGTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGGAGTTTGTATTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGTAGATTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................CCACTGGGTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCATTGGGTGAAGGTTGTCTTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACGGGGCGAATTTTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
........................................................CGATAAACTTTGTTCAGTTTTGT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCCCTGGGAGAAGTTTGTCTT....................................................... 21 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCAGTGGGTGAAGTTTGTCTTA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATCACTGGGTGAAGATTGTCTT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGTAGTTTGTCTTAC..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGTGTGAAGTTGGTCTTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
...............................................................................................CTGGGTGAAGTTTGTCTTAA..................................................... 20 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGGGTAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GAAATGGGTGAAGATTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGCAGTTTGTCTTAAA.................................................... 24 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTG....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGACGTTTGTCTTAA..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGAGTGAAGTTTGTATTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGGGAACTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTGTGTCTTA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGACGTTTGTCT........................................................ 20 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCTCTGGGTGAAGTTTGACTTT...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
.........................................................GATAAACTTTGTTCAGTTTTG.......................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.......................................................ACGATAAACTTTGTTCGTCTTT........................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCTCTGGGTGCAGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCAATGGGTGAAGTTTGGCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GAACTGGGTGTAGTTTGCCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGTGTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGGAGGTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGCCTT....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTGGTCTTA...................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTATCTTT...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTCAAGTTTGTCTT....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................CTACTGGGTGAAGTTTGTCTTAA..................................................... 23 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCGCTGGGTGAAGTTTGCCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGATGTTTGTCTT....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................TGACTGGGTGAAGTTTGTCGTAT..................................................... 23 3 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTATTA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGACGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTCAAGTTTGTCTTGA..................................................... 23 3 1 1.00 1 0 1 0 0 0 0
........................................................CGATAAACTTTGTTCAGTTTTGC......................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0
...........................................................................................AGCACTGGGGGAAGTTTGTCTT....................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................TCACTGGGTGAAGTTTTTCTTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGCGACGTTTGGCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................................................................AGCACTGGGTGACGATTGCCTT....................................................... 22 3 1 1.00 1 1 0 0 0 0 0
........................................................CTATAAACTTTGTTCAGTTTT........................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGAAGGTTGGATTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................TCACTGGGTGAAGTTTGTCTTAA..................................................... 23 2 1 1.00 1 1 0 0 0 0 0
........................................................CGAAAAACTTTGTTCAGTTTTGC......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGTCGGTTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGTAGCGTGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAAGTTTGTCTTCC..................................................... 23 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGTCGAGTTCGTCTTA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGGGAAGCTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCATTGGGTAAAGTTTGTCTTA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................................................................................GCCCTGGGTGATGTTTGTCTTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
...........................................................................................ATCACTGGGTGAAGTTTGTCTT....................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0
............................................................................................GCCCTGGGTGAAGTTTGTCTT....................................................... 21 1 1 1.00 1 0 1 0 0 0 0
............................................................................................GCACTGGGGGAAGTGTGTCTTAA..................................................... 23 3 2 0.50 1 0 1 0 0 0 0
.......AAGTGAAGGAGAAAAAAAGAGAAAAG....................................................................................................................................... 26 3 2 0.50 1 0 0 0 1 0 0
............................................................................................GCCCTGGGTGATATTTGTCTTA...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................ACACTGGGTGAAGTGTGTATTA...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................TGACTGGGTGAAGTTTGTCGT....................................................... 21 3 2 0.50 1 1 0 0 0 0 0
............................................................................................GCACTGGGCTAAGTTTGTCTTA...................................................... 22 2 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGGAGTTTGTTTTT...................................................... 22 3 4 0.50 2 0 2 0 0 0 0
............................................................................................GCACTGGGTGATGGTTGTCTTT...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGAGTCGAGTTTGTCTTA...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACGGGGGGCAGTTTGTCTT....................................................... 21 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGCGTGTAGTTTGTCTTT...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGTGTGATGTTTGTCTT....................................................... 21 2 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACAGGGAGAAGTTTGTCTTAC..................................................... 23 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGGGGTTTGTTTTA...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGCAGTTTGTATTA...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGTGAGGTTTCTCTTT...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGTTGCAGTTTGTCTT....................................................... 21 2 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGAAGTGTCTCTT....................................................... 21 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGGGGAGTTTGTATT....................................................... 21 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GGACTGGGTGAGGTTTATCTTA...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCCCTGGGTGAAGTTTCTCTT....................................................... 21 2 2 0.50 1 1 0 0 0 0 0
............................................................................................GCACTGGGTTTAGTTTTTCTTA...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGTAAAGTGTGTCTTT...................................................... 22 3 2 0.50 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGAATTTTGTCT........................................................ 20 2 2 0.50 1 0 1 0 0 0 0
............................................................................................GGACTGGGTGAAGTTTGTCC........................................................ 20 2 2 0.50 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGTAGTTTGTCGTA...................................................... 22 2 2 0.50 1 0 1 0 0 0 0
............................................................................................GGACTGGGTGCATTTTGTCTT....................................................... 21 3 3 0.33 1 1 0 0 0 0 0
............................................................................................GCACTGGGTGATGTGTGGCTTA...................................................... 22 3 3 0.33 1 0 1 0 0 0 0
............................................................................................GCACTGGGTTTAGTTTGGCTTA...................................................... 22 3 3 0.33 1 0 1 0 0 0 0
............................................................................................GCACTGGCTGCAGTTTGTCTTC...................................................... 22 3 3 0.33 1 0 1 0 0 0 0
............................................................................................GCACTGGGAGATGTTTGTCTTT...................................................... 22 3 3 0.33 1 0 1 0 0 0 0

Anti-sense strand reads

CACGGGCTTCACTTCCTCTTTTTCTTTCTTTTTGTTTGATAGAGCCTTGATAATATGCTATTTGAAACAAGTCAAAACGGTTGAACGAACGTCGTGACCCACTTCAAACAGAATATTAGGGTGTCATTCGCTAGTCGCTCGCAGAGTCGCGTGTAACACTTGCTGCTA

***************************************...(((....(((((.(((((((((((((((((.((((..........)))).))))))))))))))))).)))))))).........***************************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body
........................................................................CAAGACGTTTGAACGAACGTA........................................................................... 21 3 17 0.06 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 3:12677839-12678006 - dps-mir-309 Known_mirbase GTGCCCGAAGTGAA--GGAG------AAAA------AGAA----------------------AGAAAAACAA-ACT-AT---C---TC---GGA----ACTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCAGCG--------A------GCGT----------CTCAGCGCACATTG----TGAACGACGAT
droPer2 scaffold_2:8905654-8905827 + dpe-mir-309 Known_mirbase GTGCCCGAAGTGAA--GGAG------AAAAAGAAAAAGAA----------------------AAAAAAACGA-ACT-AT---C---TC---GGA----ACTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCAGCG--------A------GCGT----------CTCAGCGCACATTG----TGAACGACGAT
droWil2 scf2_1100000004514:1652022-1652206 - dwi_187 confident A------CAGTGAA--TAGT------TCA-----------TCTAAGAAAAACTC-------A----------A-TC-AT---T---TC---AT-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAATCAAAA-----TA--CAATTGG----------AGTGTTAAAAAAAAAGGAGAGTAATCG----A
droVir3 scaffold_12875:4111774-4111937 + dvi-mir-309 Known_mirbase GAACCGGCGCAAAG--AAG-------A---------AGCC---------------------C-------------A-A---------T---ATAACA-AATATTATATGGTAAACTTTGTTCAGTTTTGCC----------------AGGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACAGCAAAAAAAAAT--A-----------------AAAATAAAACAATATTA---TTAAATAAAAAT
droMoj3 scaffold_6496:20937074-20937241 - dmo-mir-309 Known_mirbase AGGATCGGAGTGGC--AC----AGTG-----------------------------------C----------ATAT--ATATATATATACAAGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCC----------------GGGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAGCAAGGA--------AA-----AAGTCCAGTCAATT-------------------CAACGGAACT
droGri2 scaffold_5621:2480-2634 + dgr-mir-309-2 Known_mirbase GATCGCTTAGAGTAACA---GAA-ATA---------AGTC---------------------T----------A-AAAAA---T---AT---ATAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGAC----------------AACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT----GGATCAGCT--------A-----------------AAAG----------TTG----TACATAAAAAT
droAna3 scaffold_13266:9731087-9731213 + dan-mir-309 Known_mirbase GAGCCGCGAGTTAC--A----AAGTG-----------------------------------A----------A----------------------G--ATCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTCCAGAC--------A-----------------TCTG-----------------TGAGCC----C
droBip1 scf7180000396427:874066-874196 + GAGCCGCGAGTTAC--A----AAGTG--------------------------------------------------------------------AAA-GCCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGTCCAGAA--------A-----------------TCTG-----------------TGAATCCTCCG
droKik1 scf7180000302679:89644-89772 - GT-AAGGC------------AAAGTG-----------------------------------A----------A-G---C---T---TC---GGCAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGACCAGCA--------A------T----------CCAG-----------------TGAACC----A
droFic1 scf7180000454039:848283-848424 - GATCAAAGAGTGAA--C---AAA--------------TAC---------------------T----------A-GA-AG---C---TC---CGAAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGACCAGTA--------A-----------------AGTG-----------------TTAACTACCAA
droEle1 scf7180000491201:2014245-2014396 - GATCCAGCAGTGAA--ACAT------AGA-----------TCAAAGCA----GCAAGCAACT----------C-GA-A-------------GGAAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCATCT------CGA-----------------ACAG-----------------TGAAT-----T
droRho1 scf7180000780066:73369-73509 + GATCCAGCAGTGAA--CCAAAAA--------------GTA---------------------A----------A-TA-AG---C---TC---GGAAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCA----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGACCAGCT--------A-----------------ACTG-----------------TGATCA----A
droBia1 scf7180000302143:3060070-3060208 - GATCCAGCAGTGAA--A---GAA--------------GTA---------------------A----------A-TC-AG---C---TC---GGGACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCAGCA--------A-----------------AGTG-----------------TGAAGCA---C
droTak1 scf7180000415384:83767-83905 + GATCCAGCAGTGAA--AA--AAA--------------GTA---------------------A----------A-AC-AG---T---TC---GGAACA-GTAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCAGCT--------T-----------------ATTG-----------------TGAACC----A
droEug1 scf7180000409474:2396581-2396717 + GATCAAGCAGTGAA--AAC-AAA-------------------------------------------------A-TC-AG---T---TC---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAACCAGCT--------A-----------------ATAG-----------------TGAATC----T
dm3 chr2R:15549179-15549321 - dme-mir-309 Known_mirbase GATCCCGCAGTGAG--AAGCGAA--------------GTC---------------------T----------T-AA-AG---T---TT---GGAATA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCT--------A-----------------ATTG-----------------TGAGCCA---C
droSim2 2r:16196449-16196590 - dsi-mir-309 Known_mirbase GATCTAGTAGTGCA--AAG-CAA--------------GTC---------------------T----------T-AA-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCT--------A-----------------ATTG-----------------TGAACCA---C
droSec2 scaffold_1:13063906-13064048 - dse-mir-309 Known_mirbase CATCCAGCAGTGAA--AAGCAAT--------------GTC---------------------T----------T-AA-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCT--------A-----------------ATTG-----------------TGAATCA---C
droYak3 2R:13623460-13623610 + dya-mir-309 Known_mirbase GATCCAGCAGTGAA--AACAAAA--------------GTATCAAAG-----------------------C----AA-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCTGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCA-----GC--CA---------------AGTG-----------------TGAACCA---T
droEre2 scaffold_4845:9749424-9749565 - der-mir-309 Known_mirbase GATCCCGCAGTGAA--AAGTAAA--------------GTA---------------------T----------A-CG-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCC--------A-----------------ATTG-----------------TGAACC----C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GTGCCCGAAGTGAA--GGAG------AAAA------AGAA----------------------AGAAAAACAA-ACT-AT---C---TC---GGA----ACTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCAGCG--------A------GCGT----------CTCAGCGCACATTG----TGAACGACGATSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA...................................................................................2212449.00244907712400113200000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT....................................................................................211480.00480025295015901000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA..................................................................................231166.00166075909802000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCT.....................................................................................20139.003906290400000
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT....................................................................................22135.003501260800000
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTA...................................................................................23117.00170280700000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTC....................................................................................21116.001600150100000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT...................................................................................22113.00130130900000
...........................................................................................................CGATAAACTTTGTTCAGTTTTG...............................................................................................................................................22112.00120350400000
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCT.....................................................................................21111.00110170300000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT..................................................................................23110.00100140500000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAC..................................................................................2319.0090030600000
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA...................................................................................2118.0080710000000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCC.....................................................................................2018.0080080000000
..........................................................................................................ACGATAAACTTTGTTCAGTTTT................................................................................................................................................2217.0070150100000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC...................................................................................2216.0060060000000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG...................................................................................2215.0050000500000
...........................................................................................................CGATAAACTTTGTTCAGTTTT................................................................................................................................................2115.0050030200000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTC......................................................................................1914.0040040000000
.........................................................................................................TACGATAAACTTTGTTCAGTTTT................................................................................................................................................2313.0030030000000
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTT....................................................................................2013.0030210000000
..........................................................................................................ACGATAAACTTTGTTCAGTTTC................................................................................................................................................2212.0020020000000
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA...................................................................................2012.0020020000000
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAT..................................................................................2212.0020010100000
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCC.....................................................................................2112.0020020000000
..........................................................................................................................................................................CTGGGTGAAGTTTGTCTTA...................................................................................1911.0010100000000
.........................................................................................................TACGATAAACTTTGTTCAGTTT.................................................................................................................................................2211.0010010000000
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTC......................................................................................2011.0010010000000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAAG.................................................................................2411.0010010000000
...........................................................................................................CGATAAACTTTGTTCAGTTT.................................................................................................................................................2011.0010000000010
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCA..................................................................................2311.0010000100000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTATT.................................................................................2411.0010010000000
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTT...................................................................................2311.0010010000000
...........................................................................................................CGATAAACTTTGTTCAGTTTTGT..............................................................................................................................................2311.0010010000000
..........................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA..................................................................................2011.0010010000000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTG....................................................................................2111.0010010000000
............................................................................................................GATAAACTTTGTTCAGTTTTG...............................................................................................................................................2111.0010100000000
...........................................................................................................CGATAAACTTTGTTCAGTTTTGC..............................................................................................................................................2311.0010010000000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCC..................................................................................2311.0010000100000
droPer2
GTGCCCGAAGTGAA--GGAG------AAAAAGAAAAAGAA----------------------AAAAAAACGA-ACT-AT---C---TC---GGA----ACTATTATACGATAAACTTTGTTCAGTTTTGCC----------------AACTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCAGCG--------A------GCGT----------CTCAGCGCACATTG----TGAACGACGATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA...................................................................................221207.0020715101710101
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT....................................................................................21148.00486138021
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA..................................................................................23123.00230218021
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCT.....................................................................................2015.005102020
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT....................................................................................2215.005113000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT...................................................................................2212.002002000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT..................................................................................2312.002001010
...........................................................................................................CGATAAACTTTGTTCAGTTTTG...............................................................................................................................................2212.002002000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTC......................................................................................1911.001001000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTA....................................................................................2111.001001000
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCT.....................................................................................2111.001001000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG...................................................................................2211.001001000
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA...................................................................................2011.001001000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCC.....................................................................................2011.001100000
...........................................................................................................CGATAAACTTTGTTCAGTTTT................................................................................................................................................2111.001100000
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC...................................................................................2211.001000010
droWil2
A------CAGTGAA--TAGT------TCA-----------TCTAAGAAAAACTC-------A----------A-TC-AT---T---TC---AT-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAATCAAAA-----TA--CAATTGG----------AGTGTTAAAAAAAAAGGAGAGTAATCG----ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTA...................................................................................22112777.001277712601273515
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAA..................................................................................2313479.00347904034705
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTT....................................................................................2111173.00117308011650
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA...................................................................................20191.0091000910
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAT..................................................................................23172.0072010710
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGAAG............................................................................................21147.0047000470
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTT...................................................................................22135.0035000350
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTAA..................................................................................21126.0026000260
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAC..................................................................................23123.0023000230
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTG........................................................................................22120.0020000200
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA...................................................................................21119.0019040150
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGAAGT...........................................................................................22118.0018000180
...........................................................................................................TGATAAACTTTGTTCAGTTTT................................................................................................................................................21114.0014000140
...............................................................................................................AAACTTTGTTCAGTTTTGCAA............................................................................................................................................21113.0013000130
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAG..................................................................................23112.0012000120
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTG...................................................................................22112.0012000120
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGC.......................................................................................23110.0010000100
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAT.................................................................................24110.0010000100
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGT.......................................................................................2319.00901080
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCT.....................................................................................2018.00800080
...............................................................................................................AAACTTTGTTCAGTTTTGCAAT...........................................................................................................................................2218.00800080
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA....................................................................................2117.00700070
..............................................................................................................TAAACTTTGTTCAGTTTTGCAA............................................................................................................................................2217.00700070
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTT....................................................................................1917.00700070
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTG........................................................................................2317.00700070
...........................................................................................................TGATAAACTTTGTTCAGTTTTG...............................................................................................................................................2216.00601050
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAA..................................................................................2216.00600060
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCT.....................................................................................2115.00500050
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTATA.................................................................................2415.00500050
..............................................................................................................TAAACTTTGTTCAGTTTTGCA.............................................................................................................................................2114.00401030
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGT.......................................................................................2414.00400040
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTT..........................................................................................2114.00400040
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAG.................................................................................2414.00400040
...................................................................................................................TTTGTTCAGTTTTGCAATCAAA.......................................................................................................................................2213.00300030
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAC.................................................................................2413.00300030
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCTT....................................................................................2213.00300030
...............................................................................................................AAACTTTGTTCAGTTTTGCAATC..........................................................................................................................................2313.00300030
...........................................................................................................................................................A--------GCATCACTGGGTGAAGTTTG........................................................................................2113.00300030
..........................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA..................................................................................2013.00300030
...................................................................................................................TTTGTTCAGTTTTGCAATCAA........................................................................................................................................2113.00301020
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTC......................................................................................1913.00300030
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTTA..................................................................................2312.00200020
..........................................................................................................ATGATAAACTTTGTTCAGTTTT................................................................................................................................................2212.00200020
...........................................................................................................TGATAAACTTTGTTCAGTTTTGT..............................................................................................................................................2312.00200020
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTGA..................................................................................2312.00200020
...........................................................................................................................................................................TGGGTGAAGTTTGTCTTA...................................................................................1812.00200020
......................................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGT...........................................................................................2312.00200020
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCTTT...................................................................................2311.00100010
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGT...........................................................................................1911.00100010
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGA.......................................................................................2411.00100010
...................................................................................................................TTTGTTCAGTTTTGCAATCAAAAA.....................................................................................................................................2411.00100010
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTT....................................................................................2011.00101000
.................................................................................................................................CAATCAAAAAATCAAGAAAATTCCTT.....................................................................................................................2611.00100010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTC...................................................................................2211.00100010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAGC.................................................................................2411.00100010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGA.......................................................................................1811.00100010
..................................................................................................................CTTTGTTCAGTTTTGCAATCA.........................................................................................................................................2111.00100010
...............................................................................................................................................AGAAAATTCCTTA--------GCATCACTGGGTGA..............................................................................................2711.00100010
...........................................................................................................................................................A--------GCATCACTGGGTGAAGTTTGTC......................................................................................2311.00100010
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGC.......................................................................................2411.00100010
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTC......................................................................................2011.00100010
......................................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGTTTGTC......................................................................................2811.00100010
...................................................................................................................................ATCAAAAAATCAAGAAAATTCCTTA--------GC..........................................................................................................2711.00100010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGT.......................................................................................1811.00100010
........................................................................................................................................................CTTA--------GCATCACTGGGTGAAG............................................................................................2011.00100010
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTT..........................................................................................2011.00100010
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGA..............................................................................................1911.00100010
...................................................................................................................TTTGTTCAGTTTTGCAATC..........................................................................................................................................1911.00100010
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTT.........................................................................................2211.00100010
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTT.........................................................................................2111.00100010
...................................................................................................................TTTGTTCAGTTTTGCAAT...........................................................................................................................................1811.00100010
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGAA.............................................................................................2011.00100010
...............................................................................................................AAACTTTGTTCAGTTTTGCA.............................................................................................................................................2011.00100010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTTA.....................................................................................2020.50100010
droVir3
GAACCGGCGCAAAG--AAG-------A---------AGCC---------------------C-------------A-A---------T---ATAACA-AATATTATATGGTAAACTTTGTTCAGTTTTGCC----------------AGGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACAGCAAAAAAAAAT--A-----------------AAAATAAAACAATATTA---TTAAATAAAAATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA...................................................................................22119425.0019425004546600000002110664110000000101102202289043365814141185202058906690320287108226365931121816110282947130001491511117300100789374377225251
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT....................................................................................2111582.001582001437000000001300000000000000100115131345133000002118352916335181064400042311300010675010000611501494835
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA..................................................................................2311459.001459201135000000001200000000000010000003906068195960000373567147457272210757000529500000432900000125162288
...........................................................................................................TGGTAAACTTTGTTCAGTTTTG...............................................................................................................................................221454.004540002000000000000000000000000000046020671041490000313601001000000001100000221200000074058
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT..................................................................................231247.002470019100000000000000000000000000000066122000006677711427230000424000001240000008111030
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC...................................................................................221239.00239100380000000001000000100000001000000030000001562427614177435000193100000321000001090000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCG.....................................................................................20176.007600023000000000000000000000000000100414200000541322011000000070000200200000014402
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC....................................................................................21165.006500062000000000000000000000000000000200000000000000000000000000000000100000000000
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA...................................................................................20157.0057000500000000050000000000000000001046105000000000000000000000200000000000000010000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT.................................................................................24149.004900015000000000000000000000000000000010000000328743100200000000000001000000000110
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC..................................................................................23146.004600027000000000000000000000000000000000000000053501101000000020000000000000000001
.................................................................................................................................CC----------------AGGCTCTTT-TTGTGC-GCA.........................................................................................................20129.00290000000000000000000000000000000040239800000010000000000000010000000000100000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT...................................................................................22129.00290009000000000000000000000000000000100100000012202311010000020000000200000000010
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA...................................................................................23121.002100010000000000000000000000000000000100100000111000000001000020000000100000010001
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT....................................................................................22120.00200005000000000000000000000000000010002100000100101000000000030000010100000030000
.................................................................................................................................CC----------------AGGCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTA...................................................................................42117.001700000000000000000000000000000000000000000001160000000000000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG...................................................................................22117.00170002000000001000000000000000000000111000000100100001000000070000000000000000010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG..................................................................................23112.00120003000000000000000000000000000000101000000100111000000000010000000100000000001
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA.................................................................................24112.00120001000000000000000000000000000000020000000130001000000000110000000100000000001
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAC.................................................................................2418.0080000000000000000000000000000000000000000001210111000100000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA..................................................................................2318.0080000000000000000000000000000000000003000000010000000000000040000000000000000000
...........................................................................................................TGGTAAACTTTGTTCAGTTTT................................................................................................................................................2118.0080000000000000000000000000000000000033100000000000000000000000000000000000010000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC.................................................................................2418.0080002000000000000000000000000000000000000000000130010000000010000000000000000000
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA...................................................................................2117.0070002000000000100000000000000000000101100000000000000000000010000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT.................................................................................2417.0070002000000000000000000000000000000001000000001000000000000020000001000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAG.................................................................................2417.0070001000000000000000000000000000000001100000111000000000000000000000000000000100
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTC......................................................................................1917.0070000000000000000000000000000000000110000000100110010000000000000000000000010000
...........................................................................................................TGGTAAACTTTGTTCAGTTTTGC..............................................................................................................................................2315.0050003000000000000000000000000000000000000001100000000000000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATTT................................................................................2515.0050000000000000000000000000000000000000000000010001010000000110000000000000000000
...........................................................................................................................................................................TGGGTGAAGTTTGTCGTA...................................................................................1815.0050001000000000000000000000000000010001000000000000000000000020000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATAA................................................................................2515.0050000000000000000000000000000000000000000000020010001000000010000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG....................................................................................2115.0050004000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................TGGTAAACTTTGTTCAGTTT.................................................................................................................................................2014.0040000000000000000000000000000000000001000000110000000000000000000000000000000010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGT.......................................................................................1814.0040000000000000000000000000000000000010100000020000000000000000000000000000000000
...........................................................................................................TGGTAAACTTTGTTCAGTTTTGCC----------------.............................................................................................................................2413.0030001000000000000000000000000000000000000000100001000000000000000000000000000000
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA..................................................................................2113.0030000000000000000000000000000000000101000000000000000000000010000000000000000000
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCG.....................................................................................2113.0030001000000000000000000000000000000000000000000000000000000010000000000000000001
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCC..................................................................................2312.0020000000000000000000000000000000000000000000100000000000000010000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAACC................................................................................2512.0020000000000000000000000000000000000000000000001100000000000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAATC................................................................................2512.0020000000000000000000000000000000000000000000000200000000000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG.................................................................................2412.0020001000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................CTGGGTGAAGTTTGTCGTA...................................................................................1912.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA..................................................................................2311.0010000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC...................................................................................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.................AG-------A---------AGCC---------------------C-------------A-A---------T---ATAACA-AAT...........................................................................................................................................................................2011.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................AGGCTCTTT-TTGTGC-GCA.........................................................................................................1811.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCT.....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTGC..................................................................................2311.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
AGGATCGGAGTGGC--AC----AGTG-----------------------------------C----------ATAT--ATATATATATACAAGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCC----------------GGGTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAGCAAGGA--------AA-----AAGTCCAGTCAATT-------------------CAACGGAACTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA...................................................................................22116785.00167855234933144214
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT....................................................................................2113875.00387572912235685
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC...................................................................................221620.00620240105770
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC....................................................................................211584.0058400005840
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA..................................................................................231540.005400162003771
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT..................................................................................231347.00347020003270
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCG.....................................................................................201153.00153128111220
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC..................................................................................23177.00770100760
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT...................................................................................22164.00640500590
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA...................................................................................20148.004803000180
.............................................................................................................GTAAACTTTGTTCAGTTTTGCC----------------.............................................................................................................................22134.00340000340
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA...................................................................................21123.00230000230
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT....................................................................................22121.00210100200
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG....................................................................................21111.00110000110
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT.................................................................................24111.00110000110
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCG.....................................................................................21110.0010020080
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGT....................................................................................19110.0010040060
.............................................................................................................GTAAACTTTGTTCAGTTTTGC..............................................................................................................................................2119.009000090
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC.................................................................................2419.009000090
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTC......................................................................................1919.009010080
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGC....................................................................................2219.009000090
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG...................................................................................2218.008040040
.................................................................................................................................CC----------------GGGTTCTATGTTGTGC-GCA.........................................................................................................2118.008050030
..........................................................................................................................................................................CTGGGTGAAGTTTGTCGTA...................................................................................1917.007000070
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGA....................................................................................2117.007000070
...........................................................................................................................................................................TGGGTGAAGTTTGTCGTA...................................................................................1817.007020050
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA.................................................................................2416.006010050
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC...................................................................................2215.005000050
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG..................................................................................2315.005030020
.................................................................................................................................CC----------------GGGTTCTATGTTGTGC-GC..........................................................................................................2015.005000050
...........................................................................................................AGGTAAACTTTGTTCAGTTTTG...............................................................................................................................................2215.005030020
...........................................................................................................AGGTAAACTTTGTTCAGTTTT................................................................................................................................................2114.004020020
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGT....................................................................................2014.004000040
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTC....................................................................................2113.003010020
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT.................................................................................2413.003010020
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA..................................................................................2313.003030000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGGC...................................................................................2213.003010020
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTC...................................................................................2313.003000030
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA...................................................................................2313.003010020
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTC...................................................................................2012.002020000
..........................................................................................................AAGGTAAACTTTGTTCAGTTTT................................................................................................................................................2212.002020000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA....................................................................................2112.002000020
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCT.....................................................................................2112.002000020
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCAC....................................................................................2112.002000020
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGTC...................................................................................2112.002100010
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA..................................................................................2312.002020000
.......................................................................................................................................................................TCACTGGGTGAAGTTTGT.......................................................................................1812.002000020
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCC.....................................................................................2012.002000020
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG.................................................................................2412.002000020
...........................................................................................................AGGTAAACTTTGTTCAGTTTTGC..............................................................................................................................................2311.001000010
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA..................................................................................2111.001010000
droGri2
GATCGCTTAGAGTAACA---GAA-ATA---------AGTC---------------------T----------A-AAAAA---T---AT---ATAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGAC----------------AACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT----GGATCAGCT--------A-----------------AAAG----------TTG----TACATAAAAATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droAna3
GAGCCGCGAGTTAC--A----AAGTG-----------------------------------A----------A----------------------G--ATCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTCCAGAC--------A-----------------TCTG-----------------TGAGCC----CSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................................................221207.002072492741025
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT....................................................................................211150.00150157948512
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC....................................................................................21119.00190190000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.....................................................................................20115.00150132000
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT....................................................................................2217.007051100
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...................................................................................2114.004310000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..................................................................................2313.003012000
..............................................................................................................CAAACCTTGTTCGGTTTTGC..............................................................................................................................................2012.002010100
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT....................................................................................2012.002200000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT.......................................................................................1811.001010000
...........................................................................................................CGACAAACCTTGTTCGGTTTT................................................................................................................................................2111.001001000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...................................................................................2211.001001000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG..................................................................................2311.001010000
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCC.....................................................................................2111.001001000
...........................................................................................................CGACAAACCTTGTTCGGTTTTT...............................................................................................................................................2211.001001000
........................................................................................................ATACGACAAACCTTGTTCGGTT..................................................................................................................................................2211.001010000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGC.......................................................................................1811.001010000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT....................................................................................1911.001010000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG....................................................................................2111.001010000
...........................................................................................................CGACAAACCTTGTTCGGTTTTG...............................................................................................................................................2211.001000001
..........................................................................................................ACGACAAACCTTGTTCGGTTT.................................................................................................................................................2111.001010000
droBip1
GAGCCGCGAGTTAC--A----AAGTG--------------------------------------------------------------------AAA-GCCATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGTCCAGAA--------A-----------------TCTG-----------------TGAATCCTCCGSizeHit CountTotal NormTotal
No Reads
droKik1
GT-AAGGC------------AAAGTG-----------------------------------A----------A-G---C---T---TC---GGCAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGACCAGCA--------A------T----------CCAG-----------------TGAACC----ASizeHit CountTotal NormTotal
No Reads
droFic1
GATCAAAGAGTGAA--C---AAA--------------TAC---------------------T----------A-GA-AG---C---TC---CGAAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGACCAGTA--------A-----------------AGTG-----------------TTAACTACCAASizeHit CountTotal NormTotal
No Reads
droEle1
GATCCAGCAGTGAA--ACAT------AGA-----------TCAAAGCA----GCAAGCAACT----------C-GA-A-------------GGAAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCATCT------CGA-----------------ACAG-----------------TGAAT-----TSizeHit CountTotal NormTotal
No Reads
droRho1
GATCCAGCAGTGAA--CCAAAAA--------------GTA---------------------A----------A-TA-AG---C---TC---GGAAAA-GCAATTATACGACAAACCTTGTTCGGTTTTGCA----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGACCAGCT--------A-----------------ACTG-----------------TGATCA----ASizeHit CountTotal NormTotal
No Reads
droBia1
GATCCAGCAGTGAA--A---GAA--------------GTA---------------------A----------A-TC-AG---C---TC---GGGACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCAGCA--------A-----------------AGTG-----------------TGAAGCA---CSizeHit CountTotal NormTotal
No Reads
droTak1
GATCCAGCAGTGAA--AA--AAA--------------GTA---------------------A----------A-AC-AG---T---TC---GGAACA-GTAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCAGCT--------T-----------------ATTG-----------------TGAACC----ASizeHit CountTotal NormTotal
No Reads
droEug1
GATCAAGCAGTGAA--AAC-AAA-------------------------------------------------A-TC-AG---T---TC---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAACCAGCT--------A-----------------ATAG-----------------TGAATC----TSizeHit CountTotal NormTotal
No Reads
dm3
GATCCCGCAGTGAG--AAGCGAA--------------GTC---------------------T----------T-AA-AG---T---TT---GGAATA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCT--------A-----------------ATTG-----------------TGAGCCA---CSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................................................221372749.00372749000021172564461000000000000000060051440225181200010300040114040001000000000000000000000001184695024209914266539433475110189032812180016712949112661014102914117105000021300023000000000015031688119323100979702362411111562200000000040311805003514501002803008006210000003000001622020002001212040704401020010000442923611010100100110000166000010001301000019345311151486000007006272737500840231263190101165111022133522114311733139942011030
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT....................................................................................21186538.00865380000104392300000000000000001000000001074110100010800000130000200000000000000000000100086338059669620000000520800203140001394230023041750000000000000000000000007035092644536441714010131132010000020000004010010010000000010100150002001000000910040000001104041303505100000001020699201000001011000523100011014016100124441674435803221322162622379142700241431300101815611847212021341151138313002230
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.....................................................................................2015469.0054690000000000000000000000100000000000389700000003060000000000000000000000000000000000004105000000000000000000000000002000000000000000000000000000471291791398900000000000000000000000000000000000000000002100000000000020000000000000102000100000000003629000010000000100201001010000000001800351201010000085524004001000000021002210000300022231280000300
...........................................................................................................CGACAAACCTTGTTCGGTTTTG...............................................................................................................................................2214921.00492100000021342000000000000000000012000116000000000000000000000000000000000000000001100074521860626150001020000003103704105812250067926000000000000000000000000050269311301555501000100000000000000007030000201100300000000000000000010001000000000000000000010522126300003728100000000000000000000000000010001000000000000000082600000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..................................................................................2311848.00184800000015200000000000000000000000003600000000010000000100000000000000000000000000001516762414100000100300000000000128500170120000000000000000000000000182112482900010020000000000000000100000000000000000000000000000000000200000000000000000001010000000018100100000000000000000000000000000001020201000000000814100100000000100100000000000000000060000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...................................................................................2211533.001533000000010000000000000000000000000060000000000000000000000000000000000000000000000143126000000000000000000000300000010000000000000100000000007345359110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010900000000000000000000000000000000000100000000000001311000000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC......................................................................................1911527.001527000000000000000000000000000000000045500000001000000000000000000000000000000000000008034400000000000000000000040003000000000000000000000000000288475129134000000000000000000000000000000000000000000000000000000000000000000000000000001000000000041400000000000001000000000000000000002000000000000000605600600000000000010010010010000000060000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..................................................................................231970.00970000000240000000000000000000000000014000000000000000000000000000000000000000000000056105940100000000000000000000001000141020000000000000000000000005118128180100000000000000000000000000000000000000000000000000000000000000000100000000000000000000008100000000000000000000000000000000000000000000000000463200000000000000000000000000000000030000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTACTG................................................................................251741.0074100000000000000000000000000000000007390000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...................................................................................221516.005160000001310000000000000000000000000800000000000000000000000000000000000000000000004952214000000000000010000002100020020000000000000000000000001131471000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000373100000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...................................................................................221438.004380000003310000000000000000000000000000000000000000000000000000000000000000000000002315235000004000000000000002300000010000000000000000000000006625823310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000520000000000000000000000000000000011000001000000000201400000000000000000000000000100100020000010
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..................................................................................231426.0042600000000100000000000000000000000002200000000000000000000000000000000000000000000002737176000000001100000000221200020020000000000000000000000004353226400000000000000000000000000000000000000000000000000000000001000000000000000000000000000000760000000000000000000000000000000000000000000000000211100000000000000000000000000000000030000000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...................................................................................201360.00360000000000000000000000000000000000010000000000000000000000000000000000000000000000058004000000000000000000000000000000000000000000000000000003362328100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000850000000000000000000000000000000000000000000000000227000000000000000000000000000000000020000000
...........................................................................................................CGACAAACCTTGTTCGGTTTT................................................................................................................................................211334.00334000000000000000000000000000000000010000000000000000000000000000000000000000000000403010000000000000000000000300000070000000000000000000000004910013707100000000000000000000100000000000100000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC....................................................................................211189.001890000000100000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000411137000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000148000000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCA.....................................................................................201178.0017800000000000000000000000000000000001770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...................................................................................19192.0092000000000000000000000000000000000000000000000000000000000000000000000000000000000990030000000000000000000000000000000000000000000000000000011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT....................................................................................19190.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011114000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000011000000000000000000000000000000000000000000000000061000000000000000000000000000000000000000000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...................................................................................21189.008900000000000000000000000000000000000000000000000000000000000000000000000000000000013102500000000000000000000430002000000000000000000000000000173000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000062000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000
...........................................................................................................CGACAAACCTTGTTCGGTTTTT...............................................................................................................................................22188.008800000010000000000000000000000000000000000000000000000000000000000000000000000000074401200000000000000000000000000000000000000000000000000000981300000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT....................................................................................22172.00720000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000003700000000000000000000000000000000000000000000000000000000000000000000000000000002000000000002000000000000000000000000000000000002000000000000052200000001000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT.......................................................................................18170.0070000000000000000000000000000000000000000000000000000000000000000000000000000000010116100100000000000000000000000001000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000032110000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG..................................................................................23168.006800000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000002410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000100000000044100000000000000000000000010000000000000000
............................................................................................................GACAAACCTTGTTCGGTTTTG...............................................................................................................................................21163.0063000000020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000061124105000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTC......................................................................................22160.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000700010000000000000000000000000000000000000000000000000000011313000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000022100000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT.................................................................................24149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000001210500000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA...................................................................................23149.004900000001000000000000000000000000000000000000000000000000000000000000000000000000011003300000000000000000000300001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026000000000000000000000000000000000000000000
...........................................................................................................CGACAAACCTTGTTCGGTTT.................................................................................................................................................20148.00480000000000000000000000000000000000420000000000000000000000000000000000000000000000000010000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTG......................................................................................19138.00380000000000000000000000000000000000380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA....................................................................................21137.003700000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000010000000
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA...................................................................................18135.00350000000000000000000000000000000000000000000000000000000000000000000000000000000003060100000000000000000000020000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000019000000000000000000000000000000000000000000
droSim2
GATCTAGTAGTGCA--AAG-CAA--------------GTC---------------------T----------T-AA-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCT--------A-----------------ATTG-----------------TGAACCA---CSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................................................22137772.00377721042115128481930317295197400000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT....................................................................................2111373.001373001100374401339260600000
...........................................................................................................CGACAAACCTTGTTCGGTTTTG...............................................................................................................................................221406.0040610380100001302000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..................................................................................23148.00480000000018250500000
............................................................................................................................................................................GGGTAAAGTTTGTCCTA...................................................................................17137.0037000000006310000000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...................................................................................20136.0036000000002780100000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.....................................................................................20133.0033000000002502600000
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...................................................................................19130.00300000000011190000000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...................................................................................21126.0026000100001690000000
.............................................................................................................................................................................GGTAAAGTTTGTCCTA...................................................................................16123.0023000000007160000000
...........................................................................................................CGACAAACCTTGTTCGGTTTT................................................................................................................................................21118.001800000000850500000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...................................................................................22114.001400000000670100000
..............................................................................................................................................................................GTAAAGTTTGTCCTA...................................................................................15113.0013000000003100000000
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA...................................................................................18112.001200000000570000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC......................................................................................19111.0011000001000001000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...................................................................................2218.00800000000340100000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...................................................................................2218.00800000000410300000
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT....................................................................................2318.00800200000140100000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..................................................................................2316.00600000000040200000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT.......................................................................................1816.00600000000420000000
....................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTC......................................................................................2215.00500000000410000000
...........................................................................................................CGACAAACCTTGTTCGGTTTTGT..............................................................................................................................................2314.00400200000000200000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT....................................................................................1914.00400000000210100000
....................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTCCTA...................................................................................2514.00400000000310000000
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA...................................................................................2314.00400000000310000000
.............................................................................................................................................................................GGTAAAGTTTGTCCT....................................................................................1513.00300000000120000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC....................................................................................2113.00300000000100200000
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT....................................................................................2213.00300000000020100000
..........................................................................................................ACGACAAACCTTGTTCGGTTTT................................................................................................................................................2212.00200200000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA....................................................................................2112.00200000000110000000
...........................................................................................................CGACAAACCTTGTTCGGTTTTA...............................................................................................................................................2211.00100100000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTT..........................................................................................1511.00100000000100000000
...........................................................................................................................................................................TGGGTAAAGTTTGTCCT....................................................................................1711.00100000000100000000
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTC......................................................................................2111.00100000000100000000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAT..................................................................................2211.00100000000010000000
...........................................................................................................CGACAAACCTTGTTCGGT...................................................................................................................................................1811.00100000000010000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG....................................................................................2111.00100100000000000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA....................................................................................2121.00200000000200000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..................................................................................2311.00100000000000100000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT....................................................................................2011.00100000000000100000
...........................................................................................................CGACAAACCTTGTTC......................................................................................................................................................1530.33100000000010000000
droSec2
CATCCAGCAGTGAA--AAGCAAT--------------GTC---------------------T----------T-AA-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCT--------A-----------------ATTG-----------------TGAATCA---CSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................................................2217841.0078416357493280
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT....................................................................................2112496.0024961722371106
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.....................................................................................201146.00146001433
...........................................................................................................CGACAAACCTTGTTCGGTTTTG...............................................................................................................................................221106.00106201031
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC......................................................................................19151.005101491
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..................................................................................23133.003300321
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..................................................................................23124.002400240
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT....................................................................................22112.001200120
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...................................................................................20111.001100110
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..................................................................................23110.001000100
...........................................................................................................CGACAAACCTTGTTCGGTTTT................................................................................................................................................2118.0080080
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...................................................................................2217.0070070
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...................................................................................2114.0043010
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC....................................................................................2114.0040040
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...................................................................................2213.0030030
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...................................................................................2213.0030030
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT....................................................................................2313.0030030
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCC.....................................................................................2113.0030030
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT....................................................................................1913.0030030
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT....................................................................................2013.0030030
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG....................................................................................2113.0031020
...........................................................................................................CGACAAACCTTGTTCGGTTTTGT..............................................................................................................................................2312.0020020
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCA.....................................................................................2012.0020020
...........................................................................................................CGACAAACCTTGTTCGGTT..................................................................................................................................................1912.0020020
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA...................................................................................1812.0020020
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA....................................................................................2112.0020020
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCC.....................................................................................2211.0010010
...........................................................................................................CGACAAACCTTGTTCGGTTTTGC..............................................................................................................................................2311.0010010
...........................................................................................................CGACAAACCTTGTTCGGT...................................................................................................................................................1811.0010010
....................................................................................................................................................................CCAGCACTGGGTAAAGTTTGT.......................................................................................2111.0010010
............................................................................................................GACAAACCTTGTTCGGTTTTG...............................................................................................................................................2111.0010010
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAA..................................................................................2211.0010010
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA....................................................................................2121.0020020
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTC...................................................................................2311.0010010
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCC.....................................................................................1811.0010010
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...................................................................................1911.0010010
........................................................................................................................................................................CACTGGGTAAAGTTTGTCC.....................................................................................1911.0010010
......................................................................................................................................................................AGCACTGGGTAAAGTTTGT.......................................................................................1911.0010010
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT.......................................................................................1811.0010010
droYak3
GATCCAGCAGTGAA--AACAAAA--------------GTATCAAAG-----------------------C----AA-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCTGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCA-----GC--CA---------------AGTG-----------------TGAACCA---TSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................................................2211191.001191037694180100000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT....................................................................................2111020.001020028361800200000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC....................................................................................211228.002280022710000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.....................................................................................20194.0094008770000000
...........................................................................................................CGACAAACCTTGTTCTGTTTTG...............................................................................................................................................22128.0028002800000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..................................................................................2318.00800350000000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...................................................................................2116.00602400000000
...........................................................................................................CGACAAACCTTGTTCTGTTTTGCC----------------.............................................................................................................................2416.00600600000000
...........................................................................................................CGACAAACCTTGTTCTGTTTT................................................................................................................................................2115.00500410000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC......................................................................................1915.00500230000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...................................................................................2214.00400310000000
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT....................................................................................2214.00400310000000
.......................................................................................................TATACGACAAACCTTGTTCTGT...................................................................................................................................................2213.00300300000000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA...................................................................................2013.00300210000000
........................................................................................................ATACGACAAACCTTGTTCTGTT..................................................................................................................................................2212.00200200000000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT....................................................................................1912.00200200000000
...........................................................................................................CGACAAACCTTGTTCTGTTT.................................................................................................................................................2012.00200200000000
..........................................................................................................ACGACAAACCTTGTTCTGTTTTGCC----------------.............................................................................................................................2512.00200200000000
...........................................................................................................CGACAAACCTTGTTCTGT...................................................................................................................................................1812.00200110000000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT....................................................................................2012.00200200000000
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCC....................................................................................1912.00200200000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...................................................................................2212.00200110000000
........................................................................................................ATACGACAAACCTTGTTCTGTC..................................................................................................................................................2211.00100100000000
.........................................................................................................TACGACAAACCTTGTTCTGTTTT................................................................................................................................................2311.00100100000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG....................................................................................2111.00100100000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..................................................................................2311.00100100000000
..............................................................................................................................................................................GTAAAGTTTGTCCTATAATCC.............................................................................2111.00100100000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTCC..................................................................................2311.00100100000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..................................................................................2311.00100000010000
.............................................................................................................................................................................................TAATCCCGAAAC--GACGACCAGCA-----GC--.................................................2511.00100100000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...................................................................................2211.00100010000000
.........................................................................................................TACGACAAACCTTGTTCTGTTTTGC..............................................................................................................................................2511.00100100000000
..........................................................................................................................................................TA------G-CCAGCACTGGGTAAAGTTTGTCCTA...................................................................................2811.00100100000000
.......................................................................................................TATACGACAAACCTTGTTCTGC...................................................................................................................................................2211.00100100000000
...........................................................................................................CGACAAACCTTGTTCTGTTTTGT..............................................................................................................................................2311.00100100000000
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCC....................................................................................2311.00100100000000
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCTA...................................................................................1911.00100100000000
...........................................................................................................CGACAAACCTTGTTCTGTTTTGC..............................................................................................................................................2311.00100100000000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCC....................................................................................2011.00100100000000
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA...................................................................................1811.00100100000000
...........................................................................................................CGACAAACCTTGTTCTGC...................................................................................................................................................1830.33100100000000
droEre2
GATCCCGCAGTGAA--AAGTAAA--------------GTA---------------------T----------A-CG-AG---T---TT---GGAACA-GCAATTATACGACAAACCTTGTTCGGTTTTGCC----------------AATTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCAGCC--------A-----------------ATTG-----------------TGAACC----CSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA...................................................................................221612.00612141850384110
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT....................................................................................211280.0028021710187100
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC.....................................................................................20119.00195806000
...........................................................................................................CGACAAACCTTGTTCGGTTTTG...............................................................................................................................................22114.00145207000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC....................................................................................21114.001401400000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA...................................................................................2116.0066000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC...................................................................................2215.0050104000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC......................................................................................1915.0050104000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA..................................................................................2314.0043001000
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT....................................................................................2014.0044000000
...........................................................................................................CGACAAACCTTGTTCGGTTTT................................................................................................................................................2114.0041101010
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT...................................................................................2213.0031002000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC..................................................................................2312.0021100000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG..................................................................................2312.0021001000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA....................................................................................2112.0020101000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT..................................................................................2312.0020002000
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCT....................................................................................1811.0010100000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT.......................................................................................1811.0011000000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT.................................................................................2411.0010001000
...........................................................................................................CGACAAACCTTGTTCGGTTTTGT..............................................................................................................................................2311.0010001000
.........................................................................................................TACGACAAACCTTGTTCGGTTT.................................................................................................................................................2211.0010100000
.........................................................................................................TACGACAAACCTTGTTCGGTTTTG...............................................................................................................................................2411.0010001000
...........................................................................................................CGACAAACCTTGTTCGGTTTTT...............................................................................................................................................2211.0010001000
...........................................................................................................CGACAAACCTTGTTCGGTTT.................................................................................................................................................2011.0011000000
...............................................................................................................................................................................TAAAGTTTGTCCTATAATCCCG...........................................................................2211.0010001000
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG...................................................................................2211.0011000000

Generated: 10/20/2015 at 06:49 PM