ID:

dps-mir-3

 Coordinate:

3:12677755-12677827 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.7

Flybase annnotation

utr3 [utr3_minus_3619]; pre_miRNA [Dpse\mir-3-RM]; miRNA [Dpse\miR-3-RA]

No Repeatable elements found

Sense Strand Reads

CGATCAGCGAGCGTCTCAGCGCACATTGTGAACGACGATACCGAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACGTGATCATCCTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGTGTACAAGAATGGCGATAAAGTGTGTGTGTCG

******************************************..(((..(((((((((((((((((((((.((((.(((................))).)))).)))))))))))))))))))))..)))....*************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916

embryo

 M059

embryo

 M040

female body

 V112

male body		 M062

head

 SRR902011

testis

 GSM444067

head

 M022

male body
.................................................................................................TCACTGGGCAAAGTGTGTCTCA...................................................... 22 0 1 14794.00 14794 11228 2804 724 35 0 1 2 0
.................................................................................................TCACTGGGCAAAGTGTGTCTC....................................................... 21 0 1 1277.00 1277 320 840 111 2 3 0 0 1
.................................................................................................TCACTGGGCAAAGTGTGTCT........................................................ 20 0 1 222.00 222 81 124 15 2 0 0 0 0
.................................................................................................TGACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 133.00 133 7 125 0 0 1 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCC...................................................... 22 1 1 113.00 113 59 48 5 1 0 0 0 0
..................................................................................................CACTGGGCAAAGTGTGTCTCA...................................................... 21 0 1 99.00 99 18 2 79 0 0 0 0 0
.................................................................................................TCACTGGGCACAGTGTGTCTCA...................................................... 22 1 1 97.00 97 82 15 0 0 0 0 0 0
...................................................................................................ACTGGGCAAAGTGTGTCTCA...................................................... 20 0 1 92.00 92 84 3 5 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCT...................................................... 22 1 1 85.00 85 54 29 0 2 0 0 0 0
.................................................................................................TCATTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 74.00 74 6 68 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGGCTCA...................................................... 22 1 1 58.00 58 52 6 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 57.00 57 57 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCAT..................................................... 23 1 1 54.00 54 12 29 13 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGCGTGTCTCA...................................................... 22 1 1 52.00 52 47 4 1 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGGGTGTCTCA...................................................... 22 1 1 49.00 49 41 8 0 0 0 0 0 0
.................................................................................................TGACTGGGCAAAGTGTGTCTC....................................................... 21 1 1 46.00 46 0 46 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCAA..................................................... 23 1 1 45.00 45 18 22 5 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCC........................................................ 20 1 1 43.00 43 1 42 0 0 0 0 0 0
.................................................................................................TCATTGGGCAAAGTGTGTCTC....................................................... 21 1 1 39.00 39 0 39 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGAGTGTCTCA...................................................... 22 1 1 39.00 39 32 6 1 0 0 0 0 0
.................................................................................................TTACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 38.00 38 12 26 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGTGTGTCTCA...................................................... 22 1 1 35.00 35 31 4 0 0 0 0 0 0
.................................................................................................TCACTGGGCAACGTGTGTCTCA...................................................... 22 1 1 33.00 33 32 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCCAAGTGTGTCTCA...................................................... 22 1 1 32.00 32 31 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCG...................................................... 22 1 1 31.00 31 30 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCGAAGTGTGTCTCA...................................................... 22 1 1 30.00 30 28 0 2 0 0 0 0 0
.................................................................................................TCACTAGGCAAAGTGTGTCTCA...................................................... 22 1 1 30.00 30 29 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGCGTCTCA...................................................... 22 1 1 27.00 27 25 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCAC..................................................... 23 1 1 26.00 26 8 16 2 0 0 0 0 0
.........................................................GGATGCATTTTGTGCAGTTATG.............................................................................................. 22 0 1 25.00 25 20 4 1 0 0 0 0 0
.................................................................................................TCACTTGGCAAAGTGTGTCTCA...................................................... 22 1 1 24.00 24 8 16 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTATCA...................................................... 22 1 1 23.00 23 23 0 0 0 0 0 0 0
.................................................................................................CCACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 23.00 23 18 5 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGGGTCTCA...................................................... 22 1 1 23.00 23 17 6 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCAG..................................................... 23 0 1 22.00 22 5 15 2 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGAGTCTCA...................................................... 22 1 1 22.00 22 20 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGCCTCA...................................................... 22 1 1 22.00 22 21 0 1 0 0 0 0 0
.................................................................................................TCACTGGGCAAGGTGTGTCTCA...................................................... 22 1 1 21.00 21 17 2 2 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCCCA...................................................... 22 1 1 21.00 21 18 3 0 0 0 0 0 0
.................................................................................................TCGCTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 21.00 21 19 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCTAAGTGTGTCTCA...................................................... 22 1 1 21.00 21 19 2 0 0 0 0 0 0
.................................................................................................GCACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 19.00 19 6 12 1 0 0 0 0 0
.................................................................................................TCACGGGGCAAAGTGTGTCTCA...................................................... 22 1 1 19.00 19 18 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCATAGTGTGTCTCA...................................................... 22 1 1 17.00 17 17 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCTAAGTGTGGCTCA...................................................... 22 2 1 17.00 17 17 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTTA...................................................... 22 1 1 15.00 15 15 0 0 0 0 0 0 0
...................................................................................................ACTGGGCAAAGTGTGTCTCAGG.................................................... 22 0 1 15.00 15 15 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAGAGTGTGTCTCA...................................................... 22 1 1 15.00 15 14 0 1 0 0 0 0 0
.................................................................................................ACACTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 14.00 14 5 9 0 0 0 0 0 0
.................................................................................................TCACTGGGTAAAGTGTGTCTCA...................................................... 22 1 1 14.00 14 13 1 0 0 0 0 0 0
.................................................................................................TCAATGGGCAAAGTGTGTCTCA...................................................... 22 1 1 14.00 14 14 0 0 0 0 0 0 0
..................................................................................................CACTGGGCAAAGTGTGTCTC....................................................... 20 0 1 13.00 13 0 2 11 0 0 0 0 0
................................................................................................CTCACTGGGCAAAGTGTGTCTCA...................................................... 23 1 1 13.00 13 9 3 1 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCATT.................................................... 24 2 1 12.00 12 2 9 0 1 0 0 0 0
.................................................................................................TCACCGGGCAAAGTGTGTCTCA...................................................... 22 1 1 12.00 12 9 3 0 0 0 0 0 0
.................................................................................................TCACTGTGCAAAGTGTGTCTCA...................................................... 22 1 1 12.00 12 8 4 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTGTCA...................................................... 22 1 1 11.00 11 11 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTCTGTCTCA...................................................... 22 1 1 11.00 11 11 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTC......................................................... 19 0 1 11.00 11 2 4 1 2 0 1 1 0
.................................................................................................TCACTGGGCAAAGTGTTTCTCA...................................................... 22 1 1 10.00 10 6 3 1 0 0 0 0 0
.................................................................................................TCCCTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 10.00 10 4 6 0 0 0 0 0 0
.................................................................................................TCACTGAGCAAAGTGTGTCTCA...................................................... 22 1 1 10.00 10 10 0 0 0 0 0 0 0
.................................................................................................TCACAGGGCAAAGTGTGTCTCA...................................................... 22 1 1 9.00 9 7 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTAA...................................................... 22 1 1 9.00 9 9 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTATCTCA...................................................... 22 1 1 9.00 9 8 1 0 0 0 0 0 0
.................................................................................................TCACTGGACAAAGTGTGTCTCA...................................................... 22 1 1 9.00 9 9 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCGCA...................................................... 22 1 1 8.00 8 6 2 0 0 0 0 0 0
.................................................................................................TTACTGGGCAAAGTGTGTCTC....................................................... 21 1 1 8.00 8 0 8 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTCTCTCA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTTTCA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGACTCA...................................................... 22 1 1 7.00 7 7 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCTACGTGTGTCTCA...................................................... 22 2 1 7.00 7 7 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGGGTCTC....................................................... 21 1 1 6.00 6 0 6 0 0 0 0 0 0
.................................................................................................TCACTCGGCAAAGTGTGTCTCA...................................................... 22 1 1 6.00 6 5 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAATGTGTGTCTCA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGAGTCTCA...................................................... 22 2 1 6.00 6 6 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAATGTGTCTCA...................................................... 22 1 1 6.00 6 5 1 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGTATCA...................................................... 22 2 1 6.00 6 6 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAATTGTTTCTCA...................................................... 22 2 1 6.00 6 6 0 0 0 0 0 0 0
.................................................................................................TCACTGTGCAAAGTGTGTCTC....................................................... 21 1 1 6.00 6 0 6 0 0 0 0 0 0
....................................................................................................CTGGGCAAAGTGTGTCTCA...................................................... 19 0 1 6.00 6 4 0 2 0 0 0 0 0
.................................................................................................TCACTGGTCAAAGTGTGTCTCA...................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTATGTCTCA...................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGCGTGTCTCT...................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0
.................................................................................................TAACAGGGCAAAGTGTGTCTCA...................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGTCTAA...................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0
...................................................................................................ACTGGGCAAAGTGTGTCTC....................................................... 19 0 1 5.00 5 4 0 1 0 0 0 0 0
.................................................................................................TCAGTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAACTGTGTCTCA...................................................... 22 1 1 5.00 5 4 1 0 0 0 0 0 0
.................................................................................................TCACTGGCCAAAGTGTGTCTCA...................................................... 22 1 1 5.00 5 4 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGAGTGTCTCG...................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0
.................................................................................................TCAATGGGCAAAGGGTGTCTCA...................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTGA...................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0 0
......................................TACCGAGGCAACGATCCTG.................................................................................................................... 19 0 1 5.00 5 4 1 0 0 0 0 0 0
.......................................................TGGGATGCATTTTGTGCAGTTA................................................................................................ 22 0 1 4.00 4 3 1 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGTGTGTCTCT...................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGGCTCT...................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTTTGTCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGGATCA...................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACAGCGTGTCTCA...................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAATTGTGTCTCA...................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TGATTGGGCAAAGTGTGTCTCA...................................................... 22 2 1 4.00 4 1 3 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.................................................... 24 2 1 4.00 4 2 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCATAGTGTGTCTCT...................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TCCCTGGGCTACGTGTGTCTCA...................................................... 22 3 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TGACTGGGCAAAGTGTGTCT........................................................ 20 1 1 4.00 4 0 4 0 0 0 0 0 0
........................................................GGGATGCATTTTGTGCAGTTATG.............................................................................................. 23 0 1 4.00 4 3 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGCGCGTCTCA...................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGTGTGTCTC....................................................... 21 1 1 4.00 4 2 2 0 0 0 0 0 0
.................................................................................................TCACTGGGAACAGTGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACAGTGTGGCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TAACGGGGCAAAGTGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCTACGTGTGGCTCA...................................................... 22 3 2 3.00 6 6 0 0 0 0 0 0 0
.................................................................................................TCACTTGGCAAAGTGTGTCTC....................................................... 21 1 1 3.00 3 0 3 0 0 0 0 0 0
.................................................................................................TCATTGTGCAAAGTGTGTCTCA...................................................... 22 2 1 3.00 3 0 3 0 0 0 0 0 0
.................................................................................................TCACTGGGCACAGTGCGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAACGTGTGGCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
....................................................................................................CTGGGCAAAGTGTGTCTCAGGA................................................... 22 0 1 3.00 3 3 0 0 0 0 0 0 0
...................................................................................................ACTGGGCAAAGTGTGTCT........................................................ 18 0 1 3.00 3 2 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAGGTGTGTCTC....................................................... 21 1 1 3.00 3 1 1 1 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGAGTGTCTAA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGCGCAAAGTGTGTCTCA...................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCCACGTGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACAGTGTGTCTCC...................................................... 22 2 1 3.00 3 1 2 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGTGTGTCTAA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................................................................CACTGGGCAAAGTGTGTCTCC...................................................... 21 1 1 3.00 3 0 2 1 0 0 0 0 0
.................................................................................................TCACTGGGCAACGTGTGTCTC....................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCGAAGGGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACCGTGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGTGTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTT....................................................... 21 1 1 3.00 3 1 2 0 0 0 0 0 0
......................................................CTGGGATGCATTTTGTGCAGTT................................................................................................. 22 0 1 3.00 3 0 3 0 0 0 0 0 0
.................................................................................................TCACTGGACAAAGTGTGTCTC....................................................... 21 1 1 3.00 3 2 1 0 0 0 0 0 0
.................................................................................................TCATTGGGCAAAGTGTGTCTCT...................................................... 22 2 1 3.00 3 0 3 0 0 0 0 0 0
.................................................................................................TCAATGGGAAAAGTGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGAGTCTCT...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCAATGGGCAAAGAGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAGAGTGCGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCATTGGGCAAAGTGTGGCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGTCTCG...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGTGTGGCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAACGCGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGCGTCTCC...................................................... 22 2 1 3.00 3 2 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGCCTC....................................................... 21 1 1 3.00 3 2 0 1 0 0 0 0 0
.................................................................................................TCACTGGGCAAATGGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................CCACTGGGCAAAGTGTGTCTC....................................................... 21 1 1 3.00 3 0 3 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGAGTGTCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGTGTGTATCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCATAGTGTGGCTCA...................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TAACAGGGCAAAGTGTGTCTCG...................................................... 22 3 1 3.00 3 3 0 0 0 0 0 0 0
.................................................................................................TCACGGGGCAAAGGGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGCGGGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCACA.................................................... 24 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGGGCGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTAAGCAAAGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TAACTGGGAAAAGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTTC...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................AATGGGCAAAGTGTGTCTCAGG.................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGCGTCTTG...................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAGAGGGTGTCTCC...................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTG....................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TGACTTGGCAAAGTGTGTCTCA...................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TGACTGGGCAAAGTGTGTCTCC...................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TAACTCGGCAAAGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TTACTGGGCAAAGTGTGTCTCC...................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGACTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGAGTGGCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCTC..................................................... 23 2 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCCAAGTGTGTCTCG...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................GCACTGGGCAAAGCGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAGGTGTGTCTCG...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................GGATGCATTTTGTGCCGTTATG.............................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGGGTGTCTC....................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCTAAGTGTGTCTCG...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAACGTGTGTCTCG...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCACA...................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGCGAGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGTCTC....................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAACGGGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCATTGGGCAAAGTGTGTCTCAT..................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGGCTGA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TAAATGGGCAAAGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTTTCTCC...................................................... 22 2 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TCCCTGGGCAAAGTGTGTCTC....................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCGAAGTGTGTCTCT...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCATTGGGCAAAGTGTGTCT........................................................ 20 1 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TCGCTGGGCAAGGTGTGTCTCG...................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGGCTCG...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.......................................................TGGGATGCATTTTGTGCAGTT................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................GTATGCATTTTGTGCAGTTATG.............................................................................................. 22 1 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCCA..................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGAGTGTCTC....................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCG........................................................ 20 1 1 2.00 2 0 0 0 1 0 1 0 0
.................................................................................................TCACTGGGCAACGTGTGTCTCC...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGGAAAGTGTGTCTCA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGAGTATCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................ACTGGGCAAAGTGTGTCTCAGGT................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGAGCGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGCCTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCGCG...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGGGAGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGCGCAATGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGCGTCTCT...................................................... 22 2 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TCACGGGGCAAAGTGGGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAGAGTGTGTCTCC...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCGAAGTGGGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGTATAGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCTAAGTGTGGCTGA...................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACAGTGTGTCTC....................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TCGCTGGGCAAAGTGTGTCTAA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCTCTGGGCAAAGTGTGTCTCA...................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTTTCTC....................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................TCACTGGGCTACGTGTGTCTGA...................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................GCACTGGGCAAAGTGTGTCTC....................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0
.................................................................................................GCACTGGGCAAAGTGGGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAGAGTGTGTCTC....................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TCACTGCGCAAAGTGTGGCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACAGGGCAAAGTGTGGCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................ACTGGGAAAAGTGTGTCTCA...................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACAGTGTGTCT........................................................ 20 1 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................TCACTGGGGACAGTGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACGGGGCAAAGTGTGGCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGGGTGTCTCA...................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCTAAATGTGGCTCA...................................................... 22 3 2 1.50 3 3 0 0 0 0 0 0 0
....................................GATACCGAGGCAACGATCCTG.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGAGTCTC....................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TCACTCGGCATAGTGCGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACACGGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAACGGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTTTGGCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................CTAGAATGGCGATCAAGTG......... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TTACTGGGCACAGTGTGTCTCT...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAATTGCGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAATGGGCAAAGTGTGTCTCG...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGACAAAGTGTGTCTCAT..................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0
......................................................CGGGGATGCATTTTGTGCAGTT................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGAGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.......................................ACCGAGGCAACGATCCTG.................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCATTTT.................................................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGCGCGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTATCTC....................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TGACTGGGAAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGAGTGTGTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................ACACTGGGCAAAGAGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................GCACTGGGCAAAGTGCGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCCCAGTGTGTCTCC...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAATGGGCAAAGTGTGTCCCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAGTGGGCAAAGGGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................TGGGCAAAGTGTGTCTCA...................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................TAACAGGGCCAAGTGTGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGAAAAGTGTGTCTCC...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAACCTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACAGGGCAAAGCGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCCCTGGACTAAGTGTGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCTAAGCGTGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGGGGCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGACAAAGTGTTTCTCA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCATAGAGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAATGTGTGTCTGA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................GCACTTGGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTCGGCAAAGTGGGTCTTA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAATGGGCAGAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................CTCACTGGGCGAAGTGTGTCTCG...................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGCGCAAAGTGAGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGGAAAGTGGGTCTCT...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAAAGGGCAAAGTGAGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................CACTGGGCAAAGTGTGCCTCA...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAGTGGGCAAAGAGAGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGGGTGCCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAATGGGCAAAGTGTGTCTTG...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTATGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGACAAAGTCTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGTGTGTCTCAA..................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACGGGGCATAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................GCACGGGGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TTAATGGGCAAAGTGTGTCTTA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGTCTCATC.................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TCACTAGGCAAAGTGTGTCTGA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TAACTGGGCAAAGAGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGGATAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCATTGGGCTAAGTGTGGCTCA...................................................... 22 3 2 1.00 2 2 0 0 0 0 0 0 0
.................................................................................................TCACTAGGCAGAGAGTGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGTGGCTCC...................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TTATTGGGCAAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................ACTGGGCATAGTGTGTCTCA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGTGCAAACTGCGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACCGGGCAAAGTGTGTCTCAT..................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAAAGTGAGACTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACATTCTGTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCATTGGACTAAGTGTGTCTCA...................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................TCACTGGGCAACGTGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGGAAAGTGTGTCTCT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................CTCACTGGGCAAAGTATGTCTCA...................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCACAGGGTGTCTCG...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACTGGGCAGAGAGTGTCTCG...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCAGTGGTCAAAGTGTTTCTCA...................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCACGGGGCAAAGTGTGTGTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCGCTGGGCAAAGTGTGTCTCG...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCCCTGGGCTAAGTGTGTCTCA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................TCATTGGGCAAAGTGTGTCTAA...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................ATCACTGGGCAAAGTGTGTCTCA...................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

GCTAGTCGCTCGCAGAGTCGCGTGTAACACTTGCTGCTATGGCTCCGTTGCTAGGACCCTACGTAAAACACGTCAATACAGATGCACTAGTAGGAGTAGTGACCCGTTTCACACAGAGTCCTAACGTCGGGGCGGTTGTTCACATGTTCTTACCGCTATTTCACACACACAGC

***************************************..(((..(((((((((((((((((((((.((((.(((................))).)))).)))))))))))))))))))))..)))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343916

embryo

 V112

male body
.......................................TGGTTCCGTTGCTAGTACGC.................................................................................................................. 20 3 12 0.08 1 1 0
..................................TGGTCTGGCTCCGGTGCTA........................................................................................................................ 19 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 3:12677705-12677877 - dps-mir-3 Known_mirbase CGA-----TCAGCGAG------CGTCTCAGCGCACATTG------------------------------------TGAACG-ACG-A----TACCGAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGT-GTACAAGAATG-GCGA------------------------TA--A-------AGTGT--GTG--T----------GTCG
droPer2 scaffold_2:8905789-8905961 + dpe-mir-3 Known_mirbase CGA-----TCAGCGAG------CGTCTCAGCGCACATTG------------------------------------TGAACG-ACG-A----TACCGAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGT-GTACAAGAATG-GCGA------------------------TA--A-------AGTGT--GTG--T----------GTCG
droWil2 scf2_1100000004514:1651883-1652060 - dwi-mir-3 Known_mirbase AAT-----ACAATTGG------AGTGTTAAAAAAAAAGG------------------------------------AGAGTA-ATCGAA-----TTTAGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAACC-CAAAAAGTTAG-CCAA-------------------------CCAA-------ACT--TAGTGAGTG------------A
droVir3 scaffold_12875:4111894-4112089 + dvi-mir-3 Known_mirbase CAG-----CAAA-----------AAAA----------AATAAAAATAAAACAATATTATTAAATAAAAATA----CCAGAA-TCT-CA--------TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAACGCA-----G-CTCA---------G--ATATTCCAGTGTTT--C--AG---TGTGACAG----T----------GTTC
droMoj3 scaffold_6496:20936947-20937101 - dmo-mir-3 Known_mirbase GAAAAAGTCCA-----GTC--AATTC--------------------------------------------------------AAC-GGAACTCTCGCAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAG-------GAGGA-GTGT------------------------TT--C-------AGTTCCAG----TG----------TTT
droGri2 scaffold_15112:2108943-2109135 - dgr-mir-3-1 Known_mirbase GGA-----TCA-----GCT--AAAAGA----------TG--------------------TATATAAAAATACTTGCCAAAT-TTT-CA--------TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAAGAATATAAAAT-G-GTGA------------ATTTTGCAGTGTTT--TGCAGTGTTTTGTGTG----T----------GTTG
droAna3 scaffold_13266:9731192-9731345 + dan-mir-3 Known_mirbase CCG----TCCA-----GAC--ATCTG-------------------------------------------------TGAGCC-CCCAAC--------TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAA---AAATA-TA-------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACGAAG-AATCAATTCAT-C----------------------------A--A-------ATTGTAAG----TGA--------TTTT
droBip1 scf7180000396427:874172-874326 + CGT-----CCA-----GAA--ATCTG-------------------------------------------------TGAATC-CTCCGC-----TCCGGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAA---AATCA--------TAACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACAAAGAAT-CCAGTC------A------------------------TC--A-------AATGTAAG----TGG--------TTAT
droKik1 scf7180000302679:89511-89665 - CGA-----CCAGCAAT------CCAG-------------------------------------------------TGAACC-AGC-AA--------AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGAT---AC-------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACGGAGACTCCAACAGCA-G---------CA-----------------C----------CAAGAAAG----TAAA-------GTTC
droFic1 scf7180000454039:848156-848307 - CGA-----CCA-----GTA--AAGTG-------------------------------------------------TTAACT-ACCAAA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTA-----------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCGAAT-CTTCAAACAAA-CCAAT--A-ATC--------------------C-------AA--CAAG----TGA--------ACTT
droEle1 scf7180000491201:2014103-2014266 - CGA-----CCA-----TCTCGAACAG-------------------------------------------------TGAATT-ATCGAA--------AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTAA-----------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCGC----TTCAACCATA-CAAAGCCA-ATA-----------------C--A-------AAAGTAAG----TGATAATCGGTGCTC
droRho1 scf7180000780066:73489-73641 + CGA-----CCA-----GCT--AACTG-------------------------------------------------TGATCA-AAC-AA--------AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCGCTA-CTTCAACCATA-TAAATACA-ATA-----------------C--A-------AAAGTAAG----TG-------------
droBia1 scf7180000302143:3059940-3060091 - CGA-----CCA-----GCA--AAGTG-------------------------------------------------TGAAGC-ACCCGA--------AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCGCAA-CGTAAACTGAA-A-AAT--ACGTG-----------------C--C-------AAAGTAAG----TG-------------
droTak1 scf7180000415384:83885-84026 + CGA-----CCA-----GCT--TATTG-------------------------------------------------TGAACC-AACCAA--------AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----GC-------AACCAAA-GAAAT--A-ATC-----------------T--C-------AAAGTAAG----TG-------------
droEug1 scf7180000409474:2396697-2396839 + CAA-----CCA-----GCT--AATAG-------------------------------------------------TGAATCTACC-AA-----AA-CGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCAAGA-CTTTAAACT--------------------------------G--A-------AAAGTAAG----TG-------------
dm3 chr2R:15549045-15549200 - dme-mir-3 Known_mirbase CGA-----CCA-----GCT--AATTG-------------------------------------------------TGAGCC-ACC-TA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTTCAAATCAATTAA------ATCAAAA--AAT--------C--A-------AGAGTAAG----TG-------------
droSim2 2r:16196317-16196470 - dsi-mir-3 Known_mirbase CGA-----CCA-----GCT--AATTG-------------------------------------------------TGAACC-ACC-AA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCTA-CTTCAAATCAA-C-A------ATCCAAA--AAG--------C--A-------AGAGTAAG----TG-------------
droSec2 scaffold_1:13063768-13063927 - dse-mir-3 Known_mirbase CGA-----CCA-----GCT--AATTG-------------------------------------------------TGAATC-ACC-AA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTACAAATCAA-C-A------ATCAAAA--AAT--------C--A-------AGAGTAAG----TTAT-------ATTG
droYak3 2R:13623586-13623748 + dya-mir-3 Known_mirbase CGA-----CCAGCA--GCC--AAGTG-------------------------------------------------TGAACC-ATC-AA--------AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACGCAG-CTACAAATCAA-C-AGT--A-ATGCAAA--AGA--------G--A-------AGAGTAAG----TG----------TTA
droEre2 scaffold_4845:9749292-9749444 - der-mir-3 Known_mirbase CGA-----CCA-----GCC--AATTG-------------------------------------------------TGAACC-CAC-CA--------AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACGCAA-CTACAAATCAA-C-AAC--AAAT------------------G--C-------AGAGTAAG----TG----------TTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
CGA-----TCAGCGAG------CGTCTCAGCGCACATTG------------------------------------TGAACG-ACG-A----TACCGAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGT-GTACAAGAATG-GCGA------------------------TA--A-------AGTGT--GTG--T----------GTCGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................22114794.001479407242804011228235010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................2111277.0012771111840332002000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................201222.0022201512408102000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................221113.00113054805901000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21199.0099079201800000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................20192.009205308400000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................22185.0085002905402000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23154.00540132901200000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................23145.0045052201800000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................20143.004300420100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................22131.003100103000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................23126.002602160800000
..............................................................................................................GGATGCATTTTGTGCAGTTATG.........................................................................................................................................................22125.002501402000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................23122.002202150500000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG.....................................................................................................22115.001500001500000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................20113.001301120000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................24112.00120090201000
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................19111.00110140212010
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1916.0060200400000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1915.0050100400000
...........................................................................................TACCGAGGCAACGATCCTG...............................................................................................................................................................................1915.0050010400000
............................................................................................................TGGGATGCATTTTGTGCAGTTA...........................................................................................................................................................2214.0040010300000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2414.0040020200000
.............................................................................................................GGGATGCATTTTGTGCAGTTATG.........................................................................................................................................................2314.0040010300000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCAGGA....................................................................................................2213.0030000300000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCT.........................................................................................................1813.0030010200000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCC.......................................................................................................2113.0030120000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT........................................................................................................2113.0030020100000
...........................................................................................................CTGGGATGCATTTTGTGCAGTT............................................................................................................................................................2213.0030030000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA.....................................................................................................2412.0020000200000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTTC.......................................................................................................2212.0020000200000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTG........................................................................................................2112.0020010100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC......................................................................................................2312.0020010100000
............................................................................................................TGGGATGCATTTTGTGCAGTT............................................................................................................................................................2112.0020000200000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCA......................................................................................................2312.0020000200000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCG.........................................................................................................2012.0020000001010
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGGT....................................................................................................2312.0020000200000
....................................................................................G-A----TACCGAGGCAACGATCCTG...............................................................................................................................................................................2111.0010000100000
............................................................................................ACCGAGGCAACGATCCTG...............................................................................................................................................................................1811.0010000100000
....................................................................................................................................................................TGGGCAAAGTGTGTCTCA.......................................................................................................1811.0010100000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.....................................................................................................2411.0010010000000
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.......................................................................................................2311.0010100000000
droPer2
CGA-----TCAGCGAG------CGTCTCAGCGCACATTG------------------------------------TGAACG-ACG-A----TACCGAGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAGT-GTACAAGAATG-GCGA------------------------TA--A-------AGTGT--GTG--T----------GTCGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................2211931.0019316727170718544
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................211281.00281198866045
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................20145.004511281014
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................20115.00150015000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................22112.00120012000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................2117.007061000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................2216.006103011
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................2315.005004010
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG.....................................................................................................2214.004004000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................2214.004103000
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................1914.004013000
..............................................................................................................GGATGCATTTTGTGCAGTTATG.........................................................................................................................................................2213.003003000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2012.002020000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................2312.002011000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT.......................................................................................................2211.001001000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2411.001000010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................2011.001000001
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT.....................................................................................................2411.001000001
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCAGG.....................................................................................................2111.001001000
................................................................................................................................................................TCACTGGGCAAAGTGTGT...........................................................................................................1811.001001000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................2311.001001000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAG......................................................................................................2111.001001000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGA.....................................................................................................2411.001001000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1911.001001000
.......................................................................................................................TTGTGCAGTTATGTCTACG--TGATCA--TC------C................................................................................................................................2811.001001000
droWil2
AAT-----ACAATTGG------AGTGTTAAAAAAAAAGG------------------------------------AGAGTA-ATCGAA-----TTTAGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAACC-CAAAAAGTTAG-CCAA-------------------------CCAA-------ACT--TAGTGAGTG------------ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................22142754.0042754092642474182
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................211559.0055921115441
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................201368.003680203651
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................201286.002860622771
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................231278.002780302741
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21151.00510110400
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23143.0043010420
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCATA.....................................................................................................22140.0040000400
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................22139.0039000390
..............................................................................................................GGATGCATTTTGTGCAGTTATG.........................................................................................................................................................22136.0036000360
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................22129.0029010280
......................................................................................AA-----TTTAGACCATGATTTTG...............................................................................................................................................................................19119.0019010180
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................22118.0018000180
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................23113.0013000130
............................................................................................................TGGGATGCATTTTGTGCAGTTA...........................................................................................................................................................22111.0011000110
.......................................................................................A-----TTTAGACCATGATTTTG...............................................................................................................................................................................18110.0010000100
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................2419.00901080
............................................................................................................TGGGATGCATTTTGTGCAGTT............................................................................................................................................................2118.00800080
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1917.00700070
.............................................................................................................................................................TCATCACTGGGCAAAGTGTGTC..........................................................................................................2216.00600060
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.....................................................................................................2416.00600060
....................................................................................................................................TCTTCATGTGATAATTCT------CTCA.............................................................................................................................2216.00600060
....................................................................................................................................................................TGGGCAAAGTGTGTCTCA.......................................................................................................1815.00501040
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................1915.00500050
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1914.00400040
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT......................................................................................................2114.00400040
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2014.00404000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA......................................................................................................2114.00400040
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................2313.00300030
................................................................................................................................................................TCACTGGGCAAAGTGTGT...........................................................................................................1813.00300030
.................................................................................................................................................................CACTGGGCAAAGTGTGTCT.........................................................................................................1912.00202000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTA........................................................................................................2112.00200020
..............................................................................................................................................................CATCACTGGGCAAAGTGTGTCT.........................................................................................................2212.00200020
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT.....................................................................................................2212.00200020
......................................................................................................................................................................................TAATTTTGGTAACCATATC....................................................................................1912.00200020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCCA........................................................................................................2112.00200020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAG.......................................................................................................2211.00100010
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.......................................................................................................2311.00100010
.............................................................................................................................................................TCATCACTGGGCAAAGTGTGT...........................................................................................................2111.00100010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.....................................................................................................2411.00100010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC....................................................................................................2511.00100010
..............................................................................................................GGATGCATTTTGTGCAGTTAT..........................................................................................................................................................2111.00100010
................................................................................................................................................................TCACTGGGCAAAGTGTGTA..........................................................................................................1911.00100010
..............................................................................................TTAGACCATGATTTTGGGA............................................................................................................................................................................1911.00100010
................................................................................................................ATGCATTTTGTGCAGTTATGT........................................................................................................................................................2111.00100010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATATA...................................................................................................2611.00100010
............................................................................................................TGGGATGCATTTTGTGCAGTTT...........................................................................................................................................................2211.00100010
................................................................................................................................................................TCACTGGGCAAAGTGTGTTCA........................................................................................................2140.25100010
droVir3
CAG-----CAAA-----------AAAA----------AATAAAAATAAAACAATATTATTAAATAAAAATA----CCAGAA-TCT-CA--------TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAACGCA-----G-CTCA---------G--ATATTCCAGTGTTT--C--AG---TGTGACAG----T----------GTTCSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................22119010.001901033151096123111112921621211257223111152681821564212538752531620025581421386315147325619155223421000292832712000461683430001003181471744572
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................2111472.0014722534100000010013301100000000000001190528778351000038285547416017171044300047630001857200000266561042028
..............................................................................................................GGATGCATTTTGTGCGGTTATG.........................................................................................................................................................2211462.00146200031000000001110000000000000100001120165203381528000011060000000000000070000000300000000110
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................231518.00518000150000000001001000000000000000300755815867000003122121000010001241000151230000001771064
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................221409.0040900038000000000200000000000010000011910990000116512741633141200057110001111650010005428382012
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................201167.00167001350000000001000001000001001101601225245100001050232300100003180000000300000041105
..................................................................................TCT-CA--------TAGCTCTGCTTTTG...............................................................................................................................................................................191123.0012300020000000000000000000000000000130920146100000110000000000000000000001100000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................201106.0010600000000000000100000000000000000407163617000001000000000000000230000000000000010000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23170.0070000120000000000000000000000000000204714500000231112020111000130000000200000011210
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................22161.0061000190000000001000000000000000000200110000000010000000000000201000020300000072100
..............................................................................................................GGATGCATTTTGTGCGGTTAT..........................................................................................................................................................21158.005800020000000001000000000000000000206793100000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................24149.004900030000000000000000000000010000406711500000010100000000000030000111200000010010
................................................................................A-TCT-CA--------TAGCTCTGCTTTTG...............................................................................................................................................................................20145.0045000000000000010000000000000000003031321900001200000000000000000000001000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAA....................................................................................................25120.00200001000000001000000000000000000010127400000000000000000000020000001000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................20118.001800018000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT......................................................................................................23115.00150003000000000000000000000000000000000000000102023021000000000000000000000000001
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21115.00150010000000000000000000010000000010212200000000000000000000050000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................24114.00140002000000000000000000000000000000000000000102112001100000020000000000000010000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................22114.00140100000000000000000000000000000000102000000000000010000000080000000000000000001
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................19113.00130002000000000000000000000000010000111000000010021110000000010000000000000000000
...................................................................................CT-CA--------TAGCTCTGCTTTTG...............................................................................................................................................................................18113.00130000000000000000000000000000000010211500002010000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAA...................................................................................................26111.00110000000000000100000000000000000000132000000000000000000000010000001000000010100
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA......................................................................................................2119.0090000000000000000000000000000000020130300000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................2316.0060004000000000000000000000000000000100000000000000000000000000000000000000000100
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.....................................................................................................2416.0060002000000000000000000000000000000012100000000000000000000000000000000000000000
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.......................................................................................................2316.0060000000000000000000000000000000000100100000010100000000000010000010000000000000
......................................................................................................................................................................................AAATTGTGGCTACCAGAGAA...................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000004011
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAAA..................................................................................................2715.0050000000000000000000000000000000000103000000000000000000000000001000000000000000
......................................................................................................................................................................................AAATTGTGGCTACCAGAGA....................................................................................1915.0050000000000000000000000000000000000001000000000000000000000000000000100000001101
...............................................................................AA-TCT-CA--------TAGCTCTGCTTTTG...............................................................................................................................................................................2115.0050000000000000000000000000000000000000300001000000000000000000000000100000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1915.0050001000000000000000000000000000000040000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.....................................................................................................2415.0050000000000000000000000000000000000000000000100003100000000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT......................................................................................................2114.0040000000000000000000000000000000000102100000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTA........................................................................................................2114.0040000000000000000000000000001000000001100000000000000000000010000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.....................................................................................................2414.0040001000000000000000000000000000000000000000010101000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................2314.0040001000000000000000000000000000000021000000000000000000000000000000000000000000
......................................................................................................................................................................................AAATTGTGGCTACCAGAG.....................................................................................1814.0040000000000000000000000000000000000000000000000000000000000010000000100000020000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1914.0040001000000000000000000000000000000001000000000001000000000010000000000000000000
..............................................................................................................GGATGCATTTTGTGCGGTTATC.........................................................................................................................................................2213.0030000000000000000000000000000000000010000001000000000000000010000000000000000000
......................................................................................................................................................................................AAATTGTGGCTACCAGAGAAAATAAA.............................................................................2613.0030001000000000000000000000000000000000000000000000000000000000000000000000001010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC.....................................................................................................2413.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATCT....................................................................................................2513.0030000000000000000000000000000000000000000000110000010000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT......................................................................................................2313.0030000000000000000000000000000000000000000000100010000000000000000000000000001000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC....................................................................................................2513.0030002000000000000000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................GGATGCATTTTGTGCGGTTA...........................................................................................................................................................2013.0030000000000000000000000000000000010100100000000000000000000000000000000000000000
..............................................................................................................GGATGCATTTTGTGCGGTTATGT........................................................................................................................................................2312.0020000000000000000000000000000000000010100000000000000000000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT.....................................................................................................2212.0020000000000000000000000000000000000101000000000000000000000000000000000000000000
...................................................................................CT-CA--------TAGCTCTGCTTT.................................................................................................................................................................................1612.0020000000000000000000000000000000000000000000110000000000000000000000000000000000
..............................................................................................................GGATGCATTTTGTGCGGTTATT.........................................................................................................................................................2212.0020000000000000000000000000000000001000000000000000000000000010000000000000000000
..............................................................................................................GGATGCATTTTGTGCGGTTATGA........................................................................................................................................................2312.0020000000000000000000000000000000010010000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC.....................................................................................................2412.0020000000000000000000000000000000000000000000000001000000000000000000000000010000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCT.........................................................................................................1812.0020000000000000000000000000000000000001100000000000000000000000000000000000000000
....................................................................................................................................TCTGCC---------TCC--AAAACC...............................................................................................................................1512.0020000000000000000000000000000000000000000000000020000000000000000000000000000000
......................................................................................................................................................................................AAATTGTGGCTACCAGAGAAAATAAC.............................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000002000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................CCAGAA-TCT-CA--------TAGCTCTGCTTTTG...............................................................................................................................................................................2512.0020000000000000000000000000000000000000100000000000000000000000000000100000000000
................................................................................................................................................................TCACTGGGCAAAGTG..............................................................................................................1531.3340000000000000000000000000000000000000000000021000010000000000000000000000000000
...................................................................................................................CATTTTGTGCGGTTATG.........................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................................TTTGTGCGGTTATGTCTG.....................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC.......................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................................................................GGATGCATTTTGTGCGGTTATGC........................................................................................................................................................2311.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................GGGATGCATTTTGTGCGGTTATG.........................................................................................................................................................2311.0010000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGC.....................................................................................................2411.0010000000000000000000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
droMoj3
GAAAAAGTCCA-----GTC--AATTC--------------------------------------------------------AAC-GGAACTCTCGCAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAG-------GAGGA-GTGT------------------------TT--C-------AGTTCCAG----TG----------TTTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................2219703.0097031138284452572444
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................2114606.00460622962343021
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................2011411.0014115891313121
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................201415.0041500004150
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................221293.00293226012640
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................221214.00214030001840
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................231114.0011407101060
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................23178.007802600511
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................20145.00450370071
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................19142.00420201390
..............................................................................................................................................................CATCACTGGGCAAAGTGTGTCT.........................................................................................................22133.00330500280
..................................................................................................................................TCTAACGA---------TTG--GAAACCCA.............................................................................................................................19131.00310100300
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.....................................................................................................24130.00300200280
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................23125.00250100240
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................24122.00221600150
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21119.00193400111
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC......................................................................................................23119.00190200170
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................22118.00180130050
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT......................................................................................................23117.00171000160
...........................................................................................TCTCGCAGCTCTACTTTTG...............................................................................................................................................................................19113.0013070060
..............................................................................................................................................................CATCACTGGGCAAAGTGTGTCC.........................................................................................................22113.00130000130
..........................................................................................CTCTCGCAGCTCTACTTTTG...............................................................................................................................................................................20111.0011050060
......................................................................................................................................................................................AAATTGGGGCAACTAGCAC....................................................................................19111.00110100100
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................2319.009020070
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2418.008020060
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1916.006010050
.........................................................................................ACTCTCGCAGCTCTACTTTTG...............................................................................................................................................................................2115.005000050
.................................................................................................................................................................CACTGGGCAAAGTGTGTCT.........................................................................................................1915.005000050
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTG........................................................................................................2115.005010040
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1915.005030020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT........................................................................................................2115.005000050
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2014.004000040
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT....................................................................................................2514.004000040
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.....................................................................................................2413.003000030
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTC.....................................................................................................2413.003000030
...................................................................................................................................................................CTGGGCAAAGTGTGTCTC........................................................................................................1813.003000030
..................................................................................................................................................................ACTGGGCAAAGTGTGTCT.........................................................................................................1813.003000030
................................................................................................................................................................TCACTGGGCAAAGTGTGT...........................................................................................................1813.003010020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCC.....................................................................................................2412.002000020
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCC.......................................................................................................2012.002010010
............................................................................................CTCGCAGCTCTACTTTTG...............................................................................................................................................................................1812.002010010
....................................................................................................................................................................TGGGCAAAGTGTGTCTCA.......................................................................................................1812.002010010
......................................................................................................................................................................................AAATTGGGGCAACTAGCACAA..................................................................................2112.002000020
......................................................................................................................................................................................AAATTGGGGCAACTAGCACA...................................................................................2012.002000020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCT.....................................................................................................2412.002000020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT......................................................................................................2311.001010000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCC......................................................................................................2311.001000010
......................................................................................................................................................................................AAATTGGGGCAACTAGCACT...................................................................................2011.001000010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC.....................................................................................................2411.001000010
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCT.......................................................................................................2011.001000010
droGri2
GGA-----TCA-----GCT--AAAAGA----------TG--------------------TATATAAAAATACTTGCCAAAT-TTT-CA--------TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAAGAATATAAAAT-G-GTGA------------ATTTTGCAGTGTTT--TGCAGTGTTTTGTGTG----T----------GTTGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................2221.50321
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCT.......................................................................................................2120.50110
droAna3
CCG----TCCA-----GAC--ATCTG-------------------------------------------------TGAGCC-CCCAAC--------TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAA---AAATA-TA-------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACGAAG-AATCAATTCAT-C----------------------------A--A-------ATTGTAAG----TGA--------TTTTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................2211247.001247197249603696564
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................211153.001532310719121
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................20147.004710293221
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21122.00221812001
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................22111.0011019100
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23110.0010421111
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................2219.009152100
..............................................................................................................GGACGCATTTTGTGCAGTTATG.........................................................................................................................................................2217.007043000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................2317.007231100
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................1917.007070000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................2415.005410000
............................................................................................................TGGGACGCATTTTGTGCAGTTA...........................................................................................................................................................2213.003003000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................2013.003003000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCATT.....................................................................................................2313.003300000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................2013.003030000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.....................................................................................................2412.002020000
............................................................................................................TGGGACGCATTTTGTGCAGTT............................................................................................................................................................2112.002002000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2012.002110000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT........................................................................................................2112.002100010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................2212.002002000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................2312.002020000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................2312.002101000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1912.002002000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC.......................................................................................................2211.001001000
...................................................................................CCAAC--------TGGCTACGATCTTG...............................................................................................................................................................................1911.001001000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCT.........................................................................................................1911.001100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT.....................................................................................................2411.001100000
..............................................................................................................................................................CATCACTGGGCAAAGTGTGTCT.........................................................................................................2211.001010000
...........................................................................................................TTGGGACGCATTTTGTGCAGTT............................................................................................................................................................2211.001000001
................................................................................................................................................................TCACTGGGCAAAGTGTGT...........................................................................................................1811.001000100
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTC....................................................................................................2511.001010000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.....................................................................................................2411.001000100
..............................................................................................................................................................CATCACTGGGCAAAGTGTGTCC.........................................................................................................2211.001010000
..................................................................................CCCAAC--------TGGCTACGATCTTG...............................................................................................................................................................................2011.001010000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCA.........................................................................................................2011.001010000
droBip1
CGT-----CCA-----GAA--ATCTG-------------------------------------------------TGAATC-CTCCGC-----TCCGGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAA---AATCA--------TAACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACAAAGAAT-CCAGTC------A------------------------TC--A-------AATGTAAG----TGG--------TTATSizeHit CountTotal NormTotal
No Reads
droKik1
CGA-----CCAGCAAT------CCAG-------------------------------------------------TGAACC-AGC-AA--------AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGAT---AC-------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACGGAGACTCCAACAGCA-G---------CA-----------------C----------CAAGAAAG----TAAA-------GTTCSizeHit CountTotal NormTotal
No Reads
droFic1
CGA-----CCA-----GTA--AAGTG-------------------------------------------------TTAACT-ACCAAA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTA-----------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCGAAT-CTTCAAACAAA-CCAAT--A-ATC--------------------C-------AA--CAAG----TGA--------ACTTSizeHit CountTotal NormTotal
No Reads
droEle1
CGA-----CCA-----TCTCGAACAG-------------------------------------------------TGAATT-ATCGAA--------AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTAA-----------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCGC----TTCAACCATA-CAAAGCCA-ATA-----------------C--A-------AAAGTAAG----TGATAATCGGTGCTCSizeHit CountTotal NormTotal
No Reads
droRho1
CGA-----CCA-----GCT--AACTG-------------------------------------------------TGATCA-AAC-AA--------AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCGCTA-CTTCAACCATA-TAAATACA-ATA-----------------C--A-------AAAGTAAG----TG-------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGA-----CCA-----GCA--AAGTG-------------------------------------------------TGAAGC-ACCCGA--------AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCGCAA-CGTAAACTGAA-A-AAT--ACGTG-----------------C--C-------AAAGTAAG----TG-------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGA-----CCA-----GCT--TATTG-------------------------------------------------TGAACC-AACCAA--------AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----GC-------AACCAAA-GAAAT--A-ATC-----------------T--C-------AAAGTAAG----TG-------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAA-----CCA-----GCT--AATAG-------------------------------------------------TGAATCTACC-AA-----AA-CGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCAAGA-CTTTAAACT--------------------------------G--A-------AAAGTAAG----TG-------------SizeHit CountTotal NormTotal
No Reads
dm3
CGA-----CCA-----GCT--AATTG-------------------------------------------------TGAGCC-ACC-TA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTTCAAATCAATTAA------ATCAAAA--AAT--------C--A-------AGAGTAAG----TG-------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................2211109209.001109209000060431180437422110000000033283020130411251055934828207775138719176412695202001000000000000000000002102248678858606657869457105113478212488872219434029283213502133331146071015929552111103018260701811000031440088122137463126036617675369405421829100119465183210000012180316751620191012511258113016395224714152615921012956107000001127361221001437116545124610951033913566557132012000016584180491179251145131100353111022165710316582013790176921632795351025415973118132499344652561144152715622161122546513749212550181347412589103127392139133418942913488527535511717984124979362234929740
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................20152059.0052059000000019293000100000000220000100000466440203000130510000250100010000000000000000000000001876546634943310001002222110008478600018290780300001010100100000000004184164811421116700033000000000305160490200400111050004103701000090100000030008000480041801410030017200000001852290112121140001003210010400542911111000112244424344127310700160020122050505245401626123013263401302030110
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................21128441.0028441000000810242000000001000153001000000072110030018023010015020000000000000000000000000000102745578610711990102060051332051105563433500483821580700002100301300000011001919253527898557567010311211000000350180670400300002000000201100100010320000010000200013086483883124829228910250000640739001000001021123410101001262171003516412600423722412260147032803323113126481331251333162524236211631137040
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................20117909.001790900000002000000000000000000000000003972110101201000120020000000000000000000000000000287691200000000000100000000400001010000000000000000000000000143131452669976589101400150000000001000000000000000000000000011000010000000000000000003110000002517000000001381320000000100100002000001000100002010010521000001000863445017000110100000120470101210202110780002010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................2316909.0069090000201628810000000000002000101000003911011000010010030100020000000000000000000010007031861529522910010200100000011000223550009431800000000000000000000000003618029141091180000100000000000000022000000101000000000021010001000000009100000000011016180542460690000000010796000000010000000100000000000010000310002500000000023077001015040000002210300100100002000251000010
..............................................................................................................GGATGCATCTTGTGCAGTTATG.........................................................................................................................................................2214675.004675000000266601000000000000000000000000590000000000000000000000000000000000000000000000141798428969000000000000022500103187193000111351600000000000000000000000001282505364690000000000000000000000000000000000000000000000000000000000000000000000000000001060000000029130000000000000000000001000000000000000000100000000262300000000000000020000000001100000000010000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................2213589.003589000000000000000000000010000000000000001000601000312000000000000000000000000000000171510649000000000000000100001300031020210000000102200000000002042634731142840101000000000000000021000000000001000000000000000000000000000000000000000000010100000000685900010000001000001100000000000000000000100000000002197500100001110000000010010000000001040000010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................2212003.00200300000015000000000000002000000000001000000000000000002000000000000000000000000000069215327170010030000000003000011200020010000000100000010000000000236451372101970000010000000000000020000000000000000000010010000000000000000000000000010100011020000000047300000000000000000100000000000000000000001000001000484100000001100000100011000010000011010100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACTG....................................................................................................2511844.001844000000000000000000000000000000000018390000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................2311758.00175800000018800000000000000100000000009000100000100000000000000000000000000000000000081171017914000000011000000000000800032012300000000000000000000000092248274305000000000000000000000000000000010010000000000000000000000000000000000110003010440210000000046340000000000000000000010000000000010000000000000000561300000000000000000000000000000000030000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................2111525.00152500000025200000000000000000000000006000000000000000000000000000000000000000000000079415622290000000000000001000003000120020000000000000000000000007911210730000001000000000000010000000000000000000000000000000000000000000000000000001200040300000000181800000000000000001000000000000000000001000000000008607001000100001020000000000201000000120000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................2211316.001316000000616200000000000000000000000000000000000000000000000000000000000000000000000080208142000000000000000000010080002310600100000000000000000000043827539310000000000000000000011000000000000000000000000000000000000000000000000000000000000000000282910000000001000001000000000001000001000000000001007774001000000000001100010000000001000160000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................191965.009650000000000000000000000000000000000219000000000300000000000000000000000000000000000013411156000000000000000002000300051080000000000000000000000001761131073019000100000000000000000000000000000100001000010000000000000000010000000010000003011000000029330000000000000000000000000000000000000000000000000176600000000000000000000000000000000010001000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................231889.0088900000012100000000000000000000000002100000000000000000000000000000000000000000000004714192370000000000000001000010000150070000000000000000000000005212716032000000000000000000000000000000000000000000000000000000000000000000000000000110114041000000014190000000000000000000000000000000000000001000000100295200100000000000000000000000000010030000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................241509.00509000000010000000000000000000000000020000000100000000000000000000000000000000000000151714250000000001000000000000000600000000000000000000000000046112135124000010000000000000000000000000000000000000010000000000000000000000000000003011290110000000034000000000000000000000000000000000000000000000000075000000020000000121000000000000000010000000
..................................................................................ACC-TA--------AGGTCCCGATCCTG...............................................................................................................................................................................191450.0045000000000000000000000000000000000000000000000000000000000000000000000000000000000074805144910000100020000000000990001200400000000000000000000000007000300000000000000000000000000000000000000000000000000000000000000000000001000200010000000000210000000000000000200000000000000000000000000000000134100000000000000000000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................191386.00386000000000000000000000000000000000010001000000000001000000000000000000000000000000203010000000000000000000000000000000000000000000000000000023554622610000000000000000000000000000000000000000000000000000000000000000000010000000050400000000490000000000000000000000000000000000000000000000000199100100000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGT...........................................................................................................181324.003240000000000000000000000000000000000001000000020000000000000000000000000000000000013165540900000000000000000000210002120600000000000000000000000010550040000000000000000000000000000000000000000000000000010000000000000000000000000010000000000713000000000000000000000000110000000000000000000000089800000000000000000000000000000000020000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA......................................................................................................221320.0032000000010000000000000000000000000004000000000000000000000000000000000000000000000074221162200000000000000000000150001400200000000000000000000000059816000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000119100000000000000000000000000000000000000000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................191303.0030300000000000000000000000000000000000000000000000000000000000000000000000000000000033023000000000000000000000100001000000000000000000000000002754320000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000230000000000000000000000000000000000000000000000000165300000000000000000000000000000100020000000
..............................................................................................................GGATGCATCTTGTGCAGTTA...........................................................................................................................................................201295.00295000000000000000000000000000000000025000000000000000000000000000000000000000000000007007130000000000000000000061000000700000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.....................................................................................................221295.00295000000100000000000000000000000000030000000000000000000000000000000000000000000000386710400000000000000000000010005003000000000000000000000000171974900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000740000000000000000000000000000000000000000000000000146300000000000000000000100000000000000000000
................................................................................C-ACC-TA--------AGGTCCCGATCCTG...............................................................................................................................................................................201276.00276000000260000000000000000000000000040000000000000000000000000000000000000000000000614442370000000000000000000045000122080000000000000000000000001100060000000000000000000000000000000000000000000000000000000000000000000000000010003010000000011000000000000000010000000000000000000000000000000055400000000000000000000000000000000000000010
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA......................................................................................................211263.0026300000000000000000000000000000000004000000000000000000000000000000000000000000000021141711310000000000000000000020008100000000000000000000000000103140021000000000000000000000000000000000000000000000000000000000000000000000000010004000000000045000000000000000000000000000000000010000000000000080100000000000010000000000000000000000000000
..............................................................................................................GGATGCATCTTGTGCAGTTAT..........................................................................................................................................................211247.0024700000027000000000000000000000000001900000000000000000000000000000000000000000000007783770000001000000010000006140009110000000000000000000000000241000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.......................................................................................................231246.0024600000000010000000000000000000000000000000000000000000000000000000000000000000000050841570000010000000000000065000800400000000000000000000000041480000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000330000000000000000100000000000000000000000000000000103100000000000000000000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.....................................................................................................221217.0021700000001000000000000000000000000002000000000100000000000000000000000000000000000071102700000000001000000000500002000000000000000000000000000847391400000000000000000000000000000000000000000000000000000000000000000000000000000001010000000022000000000010000000000000000000000000000000000000063000000000000000000000000000000000000000000
....................................................................................................................................................................TGGGCAAAGTGTGTCTCA.......................................................................................................181146.00146000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000012780000000100000000000000000000000000000001000000000000000000000000000000000000000000000000000240000000000000000000000000000000000000000000000000107100000000000000000000000000000000000000000
...................................................................................CC-TA--------AGGTCCCGATCCTG...............................................................................................................................................................................181137.0013700000000000000000000000000000000000000000000000000000000000000000000000000000000030101772000000000000000000000300004008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000000000000000036000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................241136.001360000000000000000000000000000000000100000000000000000000000000000000000000000000004010100000000000000000000000000000000000000000000000000000151838000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000014000000000000000000000000000000000000000000000000048000000000001000000000000000000000020000000
.............................................................................................................GGGATGCATCTTGTGCAGTTATG.........................................................................................................................................................231107.001070000000100000000000000000000000000100000000000000000000000000000000000000000000002590015000000000000000000002110003000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037000000000000000000000000000000000000000000
......................................................................................................................................................................................AGATCCTGGCCACATCGTCGC..................................................................................21189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000081514300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000042100000000000000000000000000000000120000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCC.......................................................................................................20187.00870000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000449100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000059000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.....................................................................................................24179.0079000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000200000000000000000000000000062416600000000000000000000000000000000000000000000000000000000000000000000000000000000010000000012000000000000000000000000000000000000000000000000018000000000000000100000000000000000000000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................20177.007700000000000000000000000000000000003700000000000000000000000000000000000000000000005043001000000000000000000000003200000000000000000000000000215000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.....................................................................................................24171.00710000000000000000000000000000000000500000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000005200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000008000000000000000000000000000000000020000000
..............................................................................................................GGATGCATCTTGTGCAGTTATT.........................................................................................................................................................22170.00700000000000000000000000000000000000000000000000000000000000000000000000000000000002613002000000000000000000001200000000000000000000000000000003121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCA.........................................................................................................20163.00630000000000000000000000000000000000320000000000000000000000000000000000000000000000602220000000000000000000000000100100000000000000000000000032100100000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000007000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................20162.00620000000000000000000000000000000000480000000000000000000000000000000000000000000000002200000000000000000000000000000100000000000000000000000020100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCT.........................................................................................................18161.00610000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000395006000000000000000000000000000000000000000000000000000000000000010000000000000000010000000023000000000000000000000000000000000000000001000000025200100001000000000000000000000000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCT.......................................................................................................20160.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002267700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.....................................................................................................24152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000005903100000000000000000000000003000000000000000000000000000437000000000000000000000000000000000000000000000000000000000000000000000000000010101000000000011000000000000000000000000000000000000000000000000011000000000000000000100000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................23152.005200000000000000000000000000000000000000000000000000000000000000000000000000000000030600000000000000000000000000010010000000000000000000000001093000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000018000000000000000000000000000000000000000000
.................................................................................................................TGCATCTTGTGCAGTTATGTTT......................................................................................................................................................22147.004700000006000000000000000000000000000000000000000000000000000000000000000000000000010112340000000000000007000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT........................................................................................................21147.00470000001220000000000000000000000000500000001010000000000000000000000000000000000003031000000000000000000000000000000000000000000000000000100044002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000014000000000000000000000000100000000000000000
......................................................................................................................................................................................AGATCCTGGCCACATCGTCGCA.................................................................................22144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000000330200000000010000000000000000000000000000000000000000000135020000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
......................................................................................................................................................................................AGATCCTGGCCACATCGTCG...................................................................................20140.0040000000000000000000000000000000000080000000000000000000000000000000000000000000000300000000000000000000000003000000500000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000008400000000000000000000000000000000000000000
droSim2
CGA-----CCA-----GCT--AATTG-------------------------------------------------TGAACC-ACC-AA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCTA-CTTCAAATCAA-C-A------ATCCAAA--AAG--------C--A-------AGAGTAAG----TG-------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................22134191.003419160507210612158144211128425774200000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................2112151.002151239156730011157214217301000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................231527.005270010016123826501500000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................201215.00215006010037010822500000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................20177.007700100000161404600000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................22141.0041000000003203600000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................22140.00401016000002301800000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................22131.0031001000002102700000
..................................................................................ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................19129.00290016000000001300000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21120.002000110000650700000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA......................................................................................................22115.001500000000590100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................19114.001400001000760000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................24114.0014000000001040000000
................................................................................C-ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................20113.001300900000000400000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23110.001000200000520001000
..............................................................................................................GGATGCATCTTGTGCAGTTATG.........................................................................................................................................................2219.00900000000100800000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2219.00900000000360000000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1918.00800200000130200000
................................................................................................................................................................TCACTGGGCAAAGTGTG............................................................................................................1717.00700000000142000000
...................................................................................CC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................1815.00500500000000000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA......................................................................................................2115.00500000000410000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................2314.00400100000100200000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2014.00401300000000000000
......................................................................................................................................................................................AGATCCTGGCCACATCGTCGC..................................................................................2113.00300300000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................2413.00300000000000102000
....................................................................................................................................................................TGGGCAAAGTGTGTCTCA.......................................................................................................1813.00300000000201000000
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.......................................................................................................2313.00300000000210000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTA........................................................................................................2112.00200000000000200000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCAAGA....................................................................................................2212.00200000000200000000
.................................................................................................................TGCATCTTGTGCAGTTATGTTC......................................................................................................................................................2212.00200000000110000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2312.00200000000110000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT....................................................................................................2512.00200000000000002000
.......................................................................................................................................................................GCAAAGTGTGTCTCA.......................................................................................................1521.50300000000210000000
......................................................................................................................................................................................AGATCCTGGCCACATCGTCG...................................................................................2011.00100100000000000000
..............................................................................ACC-ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................2211.00100000000000100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.....................................................................................................2411.00100000000100000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTTT.......................................................................................................2211.00100000000000100000
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC........................................................................................................2211.00100100000000000000
.................................................................................................................TGCATCTTGTGCAGTTATGTTT......................................................................................................................................................2211.00100000000010000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCT.........................................................................................................1811.00100000000100000000
......................................................................................................................................................................................AGATCCTGGCCACATCGTCGCT.................................................................................2211.00100100000000000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTTG.......................................................................................................2211.00100000000000100000
droSec2
CGA-----CCA-----GCT--AATTG-------------------------------------------------TGAATC-ACC-AA--------AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTACAAATCAA-C-A------ATCAAAA--AAT--------C--A-------AGAGTAAG----TTAT-------ATTGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................22126152.002615235748237012046
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................2111658.001658294159431
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................201434.004345041910
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................201188.001882017313
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................23178.007840704
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21163.0063290304
..................................................................................ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................19149.004950440
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23135.003500350
................................................................................................................................................................TCACTGGGCAAAGTGTGT...........................................................................................................18131.003100301
..............................................................................................................GGATGCATCTTGTGCAGTTATG.........................................................................................................................................................22129.002900290
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................22128.002800280
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................19124.002401221
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................22123.002300203
................................................................................C-ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................20118.001820142
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................22116.001610150
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................19115.001500150
...................................................................................CC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................18111.001110100
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................23110.00100091
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1916.0060060
....................................................................................................................................................................TGGGCAAAGTGTGTCTCA.......................................................................................................1816.0060060
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2415.0051031
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.......................................................................................................2315.0052030
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA......................................................................................................2115.0050050
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................2414.0040040
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT........................................................................................................2114.0040040
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2014.0044000
......................................................................................................................................................................................AGATCCTGGCCACATCGTCG...................................................................................2013.0030030
.............................................................................................................GGGATGCATCTTGTGCAGTTATG.........................................................................................................................................................2312.0020020
..................................................................................................................................................................ACTGGGCAAAGTGTGTCT.........................................................................................................1812.0021010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA.....................................................................................................2412.0020020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCCA........................................................................................................2112.0020020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCA.........................................................................................................2012.0020020
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC....................................................................................................2512.0020020
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCT.........................................................................................................2112.0020020
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2212.0020020
...............................................................................TC-ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................2112.0020020
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT......................................................................................................2111.0010010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.....................................................................................................2411.0010010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT.......................................................................................................2211.0010010
.................................................................................................................................................................CACTGGGCAAAGTGTGTCT.........................................................................................................1911.0010010
.............................................................................................................GGGATGCATCTTGTGCAGTTAT..........................................................................................................................................................2211.0010010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.....................................................................................................2411.0010010
..............................................................................ATC-ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................2211.0010001
.............................................................................AATC-ACC-AA--------AGGTCCCGATCCTG...............................................................................................................................................................................2311.0010010
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.....................................................................................................2211.0010010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT......................................................................................................2311.0010010
......................................................................................................................................................................................AGATCCTGGCCACATCGT.....................................................................................1811.0010010
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT......................................................................................................2211.0010010
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA......................................................................................................2211.0010010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC....................................................................................................2511.0010010
...............................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC........................................................................................................2211.0010010
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.....................................................................................................2411.0010010
droYak3
CGA-----CCAGCA--GCC--AAGTG-------------------------------------------------TGAACC-ATC-AA--------AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACGCAG-CTACAAATCAA-C-AGT--A-ATGCAAA--AGA--------G--A-------AGAGTAAG----TG----------TTASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................22119463.00194630339095102502347150000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................2113579.0035795833042572300000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................201410.0041000378302000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................201149.001490014900000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................221126.001260075480300000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................231120.001200077430000000
..............................................................................................................GGATGCATCTTGTGCAGTCATG.........................................................................................................................................................221114.001140069450000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................221103.001030086160100000
..................................................................................ATC-AA--------AGGTCCTGATCCTG...............................................................................................................................................................................19181.00810060210000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................20176.00760010660000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21157.00570619320000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................23148.0048004530000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23147.0047004160000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................19141.0041003830000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................22130.0030006240000000
................................................................................C-ATC-AA--------AGGTCCTGATCCTG...............................................................................................................................................................................20126.0026002330000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................24117.0017001700000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA......................................................................................................22116.001600790000000
.............................................................................................................GGGATGCATCTTGTGCAGTCATG.........................................................................................................................................................23115.0015001230000000
......................................................................................................................................................................................AGATCTTGGCCACTTCGAC....................................................................................19114.0014001220000000
...........................................................................................................CTGGGATGCATCTTGTGCAGTC............................................................................................................................................................22112.001200480000000
...............................................................................CC-ATC-AA--------AGGTCCTGATCCTG...............................................................................................................................................................................21111.0011001010000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2419.00900630000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2017.00701600000000
...................................................................................TC-AA--------AGGTCCTGATCCTG...............................................................................................................................................................................1816.00600330000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................2316.00600420000000
..............................................................................................................GGATGCATCTTGTGCAGTC............................................................................................................................................................1915.00500410000000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1914.00400220000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.....................................................................................................2414.00400400000000
..............................................................................ACC-ATC-AA--------AGGTCCTGATCCTG...............................................................................................................................................................................2214.00400400000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA......................................................................................................2114.00400130000000
......................................................................................................................................................................................AGATCTTGGCCACTTCGACGC..................................................................................2114.00400400000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1913.00300120000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2213.00300210000000
.............................................................................................................GGGATGCATCTTGTGCAGTC............................................................................................................................................................2013.00300300000000
..............................................................................................................GGATGCATCTTGTGCAGTCAT..........................................................................................................................................................2113.00300210000000
.............................................................................................................GGGATGCATCTTGTGCAGTCA...........................................................................................................................................................2113.00300210000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC.......................................................................................................2212.00200020000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCT.......................................................................................................2012.00200110000000
......................................................................................................................................................................................AGATCTTGGCCACTTCGACGCAG-...............................................................................2312.00200200000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.....................................................................................................2412.00200200000000
.............................................................................AACC-ATC-AA--------AGGTCCTGATCCTG...............................................................................................................................................................................2312.00200200000000
................................................................................................................................................................TCACTGGGCAAAGTGTGT...........................................................................................................1812.00200110000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.....................................................................................................2412.00200110000000
......................................................................................................................................................................................AGATCTTGGCCACTTCGACG...................................................................................2012.00200200000000
......................................................................................................................................................................................AGATCTTGGCCACTTCGACA...................................................................................2012.00200200000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT....................................................................................................2512.00200200000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC.....................................................................................................2412.00200200000000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTC........................................................................................................1812.00200200000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT......................................................................................................2312.00200200000000
....................................................................................................................................................................TGGGCAAAGTGTGTCTCA.......................................................................................................1811.00100010000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATAC....................................................................................................2511.00100100000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC......................................................................................................2311.00100100000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTGT.......................................................................................................2211.00100010000000
...............................................................................CC-ATC-AA--------AGGTCCTGATCCT................................................................................................................................................................................2011.00100100000000
droEre2
CGA-----CCA-----GCC--AATTG-------------------------------------------------TGAACC-CAC-CA--------AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACGCAA-CTACAAATCAA-C-AAC--AAAT------------------G--C-------AGAGTAAG----TG----------TTASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.......................................................................................................2214885.00488511633276330829520
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTC........................................................................................................211329.0032955180087250
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.......................................................................................................21193.009389004000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCT.........................................................................................................20177.00771331030210
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA......................................................................................................23140.0040203017000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.......................................................................................................22129.002902126000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.......................................................................................................20118.001840014000
..................................................................................CAC-CA--------AGGTCCTGATCCTG...............................................................................................................................................................................19118.00188109000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.......................................................................................................22116.00161509100
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT......................................................................................................23110.00103502000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.......................................................................................................2219.0091008000
................................................................................C-CAC-CA--------AGGTCCTGATCCTG...............................................................................................................................................................................2019.0096102000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC......................................................................................................2318.0080305000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCC.........................................................................................................2018.0080800000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTC........................................................................................................2017.0076100000
..............................................................................................................GGATGCATCTTGTGCAGTTATG.........................................................................................................................................................2216.0066000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTG........................................................................................................2114.0044000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTC..........................................................................................................1914.0041300000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCT.........................................................................................................1913.0033000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG......................................................................................................2312.0022000000
......................................................................................................................................................................................AGATCCTGGCCACTTCGACG...................................................................................2012.0021001000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTT........................................................................................................2112.0020001010
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA......................................................................................................2212.0022000000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCA.......................................................................................................1912.0021001000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA......................................................................................................2112.0021001000
..............................................................................ACC-CAC-CA--------AGGTCCTGATCCTG...............................................................................................................................................................................2212.0021100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.....................................................................................................2412.0022000000
..............................................................................................................GGATGCATCTTGTGCAGTTA...........................................................................................................................................................2011.0010100000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTC........................................................................................................1911.0010001000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCA.........................................................................................................2011.0010100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.....................................................................................................2411.0010100000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAG.....................................................................................................2311.0011000000
..................................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.....................................................................................................2211.0010001000
................................................................................C-CAC-CA--------AGGTCCTGATCC.................................................................................................................................................................................1811.0010100000
...................................................................................................................................................................CTGGGCAAAGTGTGTCTCAAT.....................................................................................................2111.0011000000
.................................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT......................................................................................................2211.0011000000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.....................................................................................................2411.0010100000
................................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT......................................................................................................2311.0010100000
......................................................................................................................................................................................AGATCCTGGCCACTTCGAC....................................................................................1911.0010100000

Generated: 10/20/2015 at 10:18 PM