ID:

dps-mir-2559

 Coordinate:

4_group3:4962040-4962148 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.6 -16.4

Flybase annnotation

intron [Dpse\GA16465-in]; utr5 [utr5_plus_556]; CDS [Dpse\GA16465-cds]; CDS [Dpse\GA16465-cds]

No Repeatable elements found

Sense Strand Reads

TGGCCAACAGATGGCTGAATCTGCTGCGCCAGGCTGCGTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGGATACTGATTTTAGAGAAAAAAAAAACCATTAACGTGAGGCTTCGTTTCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTTTGGCTATTTGCT

*******************************************************************.((((.((((...((((....((((((........(((....)))........))))))..))))...))))..)))).*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M062

head

 M040

female body

 GSM444067

head

 M059

embryo

 SRR902012

CNS imaginal disc

 GSM343916

embryo

 V112

male body		 SRR902010

ovaries
............................................................................................................................TCACATCATTTTCCCCTCACAG............................................................... 22 0 1 185.00 185 62 84 14 22 0 2 1 0
............................................................................................................................TCACATCATTTTCCCCTCACAGT.............................................................. 23 0 1 104.00 104 43 16 36 3 0 2 4 0
............................................................................................................................TCACATCATTTTCCCCTCACA................................................................ 21 0 1 56.00 56 16 38 2 0 0 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCACAGC.............................................................. 23 1 1 21.00 21 15 0 0 6 0 0 0 0
...................................................................GTGTGTGGGATACTGATTTTAGAGA..................................................................................................................... 25 0 1 18.00 18 1 2 0 1 11 1 2 0
............................................................................................................................TGACATCATTTTCCCCTCACAG............................................................... 22 1 1 7.00 7 7 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCACAGA.............................................................. 23 1 1 7.00 7 3 3 1 0 0 0 0 0
.............................................................................................................................CACATCATTTTCCCCTCACAG............................................................... 21 0 1 6.00 6 0 6 0 0 0 0 0 0
............................................................................................................................TCATATCATTTTCCCCTCACAG............................................................... 22 1 1 5.00 5 4 0 0 1 0 0 0 0
............................................................................................................................TGACATCATTTTCCCCTCACAGT.............................................................. 23 1 1 5.00 5 4 0 0 1 0 0 0 0
................................................................................................................................ATCATTTTCCCCTCACAG............................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0
.............................................................................................................................CACATCATTTTCCCCTCACAGT.............................................................. 22 0 1 3.00 3 1 1 1 0 0 0 0 0
..............................................................................................................................ACATCATTTTCCCCTCACAGT.............................................................. 21 0 1 3.00 3 1 0 2 0 0 0 0 0
.............................................................................................................................CACATCATTTTCCCCTCACA................................................................ 20 0 1 3.00 3 0 3 0 0 0 0 0 0
............................................................................................................................TCATATCATTTTCCCCTCACAGT.............................................................. 23 1 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCACAC............................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................................................TCATATCATTTTCCCCTCACAGC.............................................................. 23 2 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCACAGTC............................................................. 24 1 1 2.00 2 1 0 0 1 0 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCACAA............................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0
...................................................................GTGTGTGGGATACTGATTTTAGA....................................................................................................................... 23 0 1 2.00 2 0 0 0 1 1 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCAC................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0
............................................................................................................................TTACATCATTTTCCCCTCACA................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................TAGTGATTGTAGAGAAAAAAA............................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1
...........................................................................................................................CTCACATCATTTTCCCCTCACAGT.............................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GGGTGTGGGATACTGATTTTAGAGA..................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................ACATCATTTTCCCCTCACAG............................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................GTGTGTGGGATACTGATTTTAGAGAA.................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCACGG............................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................TCACATCATTTTCTCCTCACAG............................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................CACATCATTTTCCCCTCAC................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................TGACATCATTTTCCCCTCACAGG.............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................CTAACATCATTTTCCCCTCACAGT.............................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TCACAACATTTACCCCTCACAGT.............................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................TCACATCATTTTCCCCTCACACCC............................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................CACATCATTTTCCCCTCACAGTT............................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................CGCACATCATTTTCCCCTCACAGT.............................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TCACATCCTTTTCCCCTCAC................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TGACATTATTTTCCCCTCACAGA.............................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................ATACTGATTTTAGAGAAAAAAAA.............................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................TGGTTGGACTAGATGTGTGTGG...................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0
...........................................................................................................................TTCACATCATTTTCCCCTCACAG............................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................TCATATCATTTTCCCCTCACAGA.............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTCCACTCACAGT.............................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................................TGACATCATTTTCCCCTCACAGC.............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTACCCTCACA................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GTGTGGGGGATACTGGTTTTAGAGT..................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................TCATATCATTTTCCCCTCACA................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTCTCCCCTCACAGT.............................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................TGGCTTGATAAGAGGTGTGTGG...................................................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0
............................................................................................................................TCACATCATGTTCCCCTCACA................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................CATCATTTTCCCCTCACAG............................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................CAGAGGCCTGATTGCTTTGGC........ 21 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................TGACATCATTTTCCCCTCACA................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................ACATCATTTTCCCCTCACA................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................................................................................................CACATCATTTTCCCCTCACAGA.............................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTCCCCTCACAT............................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................GGGGCTTCGTTTCTCACATC.............................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................TCCCATCATTTTCCCCTCACAGC.............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................AAAAAAAAACCATTAACGTGAGGCTTC.......................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TGACATCATTTTCCCCTCAC................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................GCACATCATTTTCCCCTCACAG............................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GTTTGTGGGATACTGATTTTAGAGA..................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................TTACATCATTTTCCCCTCACAG............................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTCCCTTCACAG............................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................TTCACATCATTTTCCCCTCACA................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................TCACATCCTTTTCCCCTCACAG............................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................GTGTGTGGGATACTGATTTT.......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0
............................................................................................................................CCACATCATTTTCCCCTCACAG............................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................TCACATCATTTTAACCTCACAGT.............................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................TGGCAGGACAACAAGTGTGTGG...................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0
.............................................................................................................................CAAATCATTTTCCCCTCACAGTT............................................................. 23 2 2 0.50 1 0 0 0 1 0 0 0 0
..............................................................AACAGGTGTGTGGGATAGCGA.............................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0 0 0 0
.............................................................CAAGAGGTGTGTGGTATG.................................................................................................................................. 18 2 4 0.25 1 0 1 0 0 0 0 0 0
TGGACAACAGATGGCTGAA.............................................................................................................................................................................................. 19 1 5 0.20 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

ACCGGTTGTCTACCGACTTAGACGACGCGGTCCGACGCAGGGTCCTATTGGTCACCGACCTGTTCTCCACACACCCTATGACTAAAATCTCTTTTTTTTTTGGTAATTGCACTCCGAAGCAAAGAGTGTAGTAAAAGGGGAGTGTCACGGGCCACGGACATGGTCCGAGGCTGGTCGTAAGTCTCCGGACTAACGAAACCGATAAACGA

***************************************************************.((((.((((...((((....((((((........(((....)))........))))))..))))...))))..)))).******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040

female body
.............................................................................................................................GTGTAGGAAAAGGTGAGT.................................................................. 18 2 20 2.00 40 40
............................................................................................................GCACTCCGAAGACAGGAGT.................................................................................. 19 3 12 1.08 13 13
.............................................................................................................................GTGTAGTAAAAGGTGAGTC................................................................. 19 2 6 0.17 1 1
..............................................................................................................................AGTAGGAAAAGGGGAGTG................................................................. 18 2 10 0.10 1 1
...................................................................................................................................................TGGGCCATGGACATGGTG............................................ 18 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 4_group3:4961990-4962198 - dps-mir-2559 Known_mirbase TGGCCAACAGATGGCTGAATCTGCTGCGCCAGGCTGCGTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAAAAA-------AAA-------------------------------------------------------CCATTA------ACGTGAGGCTTCG-T-----------------------------------TTCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTTTGGCTATTTGCT
droPer2 scaffold_1:6454634-6454840 - dpe_108 confident TGGCCAACAGATGGCTGAATCTGCTGCGCCAGGCTGCCTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAAATA---------A-------------------------------------------------------CCATTA------ACGTGAGGCTTCG-T-----------------------------------TTCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTTTGGCTATTTGCT
droWil2 scf2_1100000004521:9298715-9298921 - TGGCTCAAAGATGGTTAAATCTTTTGCGTCAGGCGGCTTCACAGGATAATCAATGGTTGGATAAAAGGT--GGGGT--ACAACAACAACAAAAA--------------TAC-------------------GAATAT----------------------------------------AATG-----GTAAACTCTCTCT-C--------------TC-----------ATCTCTTATCATTTTCTCCTCACAGTGCGCGTTCACTTTATCAGAGTCCATCGAGCATAATTCGGCCCGATTGCTTTGGCTATTTACT
droVir3 scaffold_12963:14941212-14941416 - TGGCCAACAGATGGTTGAATTTGCTGCGCCAGGCGGCCACACAGGATAATCAGTGGCTGGACAAAAGGT-TGGGGC--ACATTGATCTTCAAGAAACTCA-------CAGC-------------------CAGCTC----------------------------------------ATTT-----ACTCACTCTCT-------------------------------CTCTC---TTCTCT--CCCTCACAGTGCCCGCTGTCTGTACCAGAGCCCAGGCAACATTGTGCGACCCGATTGCTTTGGGCATTTGCT
droMoj3 scaffold_6500:17898403-17898598 - TGACCAACAGATGGTTGAATTTGCTGCGCCAAGCGGCCAATCAGGATAATCAGTGGCTGGACAAGAGGT-AATTGA---------TCACTCCTA-------------------------------------------------------------TCTCTGTCT-CTCTTTCTCTTTCT---------GACT-----------------------------------CTCTCCCA-CTCTT--TATTTGTAGTGCTCGCTGCCTGTACCAGAGCCCGGGCAGCATTGTGCGACCCGATTGCTTTGGCTATTTGCT
droGri2 scaffold_15126:4437315-4437545 + TGGCCAACAGATGGTTGAACTTGCTGCGCCAAGCGGCCACTCAAGACAATCAGTGGCTGGACAAAAGGT-AGGAGAGCACATTGATCTTGAAGAAACTTG-------CAGA-------------------AA--------------------------------------------ACTC-----TCTAATA----CT-CTCACTCCATTTCTCTAACTCTCCCTCTCTCTTATTTAACTT--CA-TTTTAGTGCGCGCTGTTTATATCAGAGCCCCGCCAGCATTGTGCGGCCCGATTGCTTTGGGTATCTGCT
droAna3 scaffold_12916:5837563-5837787 + dan_549 TGGCCAACCGATGGCTTCAGCTCCTGCGGCAGGCCGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-GAGATAACACGTT-----CTAACCAACTGATATGAAACTACGAATGTTTTTATCGCTGTCGATTCG-----AACGATCTCTCATATAAC-----------------------------------------------------------------------------CGTAC--CTATTACAGTGCGCGGTGTCTGTACCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTTCGGCTATTTACT
droBip1 scf7180000396568:1004327-1004515 - TGGCCAACCGGTGGCTACAACTTCTAAGACAGGCCGCTGCCCAGGACAACCAGTGGCTGGACAAGAGGT-ACGATC-------GA---------ATCTC-----------T-------------------CGTATAATTCAAACGATCTCTCATATAAC-----------------------------------------------------------------------------CGTCT--CTCCTACAGTGCCCGGTGTTTGTATCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTTCGGCTACTTGCT
droKik1 scf7180000302401:685533-685734 + TGGCCAATCGCTGGCTCCAGCTGCTGAGGCAGGCGGCCGCCCAGGACAACCAGTGGCTCGACAAGAGGT--GAAGG--ACACTGATCTTAGAGAAAGGCA-------ACA---------------------------------------------------------------------------GCAAATTATATGTAA--------------TT-----------CTCTCACATCACTT--CCTTCACAGTGCGAGGTGCTTGTACCAGAGTCCCAGCAACATTCAGAGGCCCGATTGCTTTGGCTATTTGCT
droFic1 scf7180000453924:1748551-1748753 + TGGCCAACCGGTGGCTCCAGCTGCTGCGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACACTGATCTCGGAGAATCGCT-------CA-T-------------------T----------------------------------------CGCTCACTG-----ATCCATT-----------------------------------CTCTCACATCTCTT--CCCTCACAGCGCGCGGGGCCTGTACCAGAGCCCGGGGAGCATCCAGAGGCCCGACTGCTTCGGCTACCTCCT
droEle1 scf7180000490728:519593-519796 + TGGCCAACCGATGGCTCCAACTCCTGCGGCAGGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-GCGGTT--TCATTGATCTTGGAGACCTTTT-------CGAC-------------------TATCCT----------------------------------------AGTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTTATAGCGCGAGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTTCGGATACCTACT
droRho1 scf7180000777886:5801-5998 - TGGCTAACAGGTGGCTTCAACTGCTGAGACAAGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACATTGATCTTGGAGA-------------CGGC-------------------TGGCTT----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTTCGGCTACCTCCT
droBia1 scf7180000302261:2154058-2154259 + TGGCCAACAGGTGGCTCCAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACACTGATCTCGGAGA-------------CTG---------------------------------------------------ATC-C-AT--TCCTTACTG-----ATCCACT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGCCCCACCAACATTCAGAGGCCCGATTGCTTTGGCTACCTACT
droTak1 scf7180000415709:76370-76572 - TGGCCAACCGATGGCTCCAGCTGCTCAGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACACTGATCTCGGAGA-------------CTG---------------------------------------------------ATCCCGA---TCTTTACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCACCAACATTCAGAGGCCCGATTGCTTTGGCTACCTACT
droEug1 scf7180000409554:2307443-2307645 - TGGCCAACAGGTGGCTCCAGCTGCTCCGACAAGCAGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACACTGATCTCGGAGA-------------TCGC-------------------TG-----------------------------ATC-CGATTT-----ACTG-----ATCTATT-----------------------------------CTCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAAAGCCCCACTAACATTCAGAGGCCCGACTGCTTCGGCTACCTACT
dm3 chr2L:3767554-3767751 + dme-mir-1004 Known_mirbase TGGCGAACAGGTGGCTCCAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTCGGCTACTTACT
droSim2 2l:3620485-3620682 + dsi_282 confident TGGCGAACAGGTGGCTCCAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTCGGCTACTTACT
droSec2 scaffold_5:1870633-1870830 + dse_75 confident TGGCGAACAGGTGGCTCCAGCTGCTTAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCTGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTCGGCTACTTACT
droYak3 2L:3769239-3769436 + dya_170 confident TGGCGAACAGGTGGCTCCAGCTGCTCCGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGATGTTTGTACCAGACGCCCAGCAACATTCAGCGGCCCGACTGCTTTGGCTACCTACT
droEre2 scaffold_4929:3813978-3814175 + der_51 confident TGGCGAACAGGTGGCTCCAGCTGCTCAGACAGGCGGCCGCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCAAT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCTGCGGCCGGACTGCTTTGGCTATCTGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGGCCAACAGATGGCTGAATCTGCTGCGCCAGGCTGCGTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAAAAA-------AAA-------------------------------------------------------CCATTA------ACGTGAGGCTTCG-T-----------------------------------TTCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTTTGGCTATTTGCTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAG...............................................................221185.0018508422622141000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGT..............................................................231104.001040163432364000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACA................................................................21156.0056038016020000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGC..............................................................23121.002100615000000
...................................................................GTGTGTGGG--ATACTGATTTTAGAGA.............................................................................................................................................................................................................................25118.001802111020011
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGA..............................................................2317.0070303010000
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACAG...............................................................2116.0060600000000
..........................................................................................................................................................................................................................................ATCATTTTCCCCTCACAG...............................................................1813.0030003000000
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGT..............................................................2213.0030101010000
........................................................................................................................................................................................................................................ACATCATTTTCCCCTCACAGT..............................................................2113.0030001020000
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACA................................................................2013.0030300000000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAC...............................................................2213.0030003000000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGTC.............................................................2412.0020011000000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAA...............................................................2212.0020001010000
...................................................................GTGTGTGGG--ATACTGATTTTAGA...............................................................................................................................................................................................................................2312.0020010000001
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCAC.................................................................2012.0020002000000
.....................................................................................................................................................................................................................................CTCACATCATTTTCCCCTCACAGT..............................................................2411.0010001000000
........................................................................................................................................................................................................................................ACATCATTTTCCCCTCACAG...............................................................2011.0010010000000
...................................................................GTGTGTGGG--ATACTGATTTTAGAGAA............................................................................................................................................................................................................................2611.0010010000000
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCAC.................................................................1911.0010100000000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACACCC.............................................................2411.0010001000000
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGTT.............................................................2311.0010001000000
..............................................................................ATACTGATTTTAGAGAAAAAAA-------A...............................................................................................................................................................................................................2311.0010001000000
.........................................................................................................................................................................................................................................CATCATTTTCCCCTCACAG...............................................................1911.0010001000000
..............................................................................................................................................................................................................................................................................................CAGAGGCCTGATTGCTTTGGC........2111.0010010000000
........................................................................................................................................................................................................................................ACATCATTTTCCCCTCACA................................................................1911.0010001000000
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGA..............................................................2211.0010100000000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAT...............................................................2211.0010100000000
..............................................................................................AAAAAA-------AAA-------------------------------------------------------CCATTA------ACGTGAGGCTTC..............................................................................................................................2711.0010001000000
...................................................................GTGTGTGGG--ATACTGATTTT..................................................................................................................................................................................................................................2011.0010000000001
droPer2
TGGCCAACAGATGGCTGAATCTGCTGCGCCAGGCTGCCTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGG--ATACTGATTTTAGAGAAAAATA---------A-------------------------------------------------------CCATTA------ACGTGAGGCTTCG-T-----------------------------------TTCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTTTGGCTATTTGCTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGT..............................................................23150.005015018251
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAG...............................................................22140.00400203890
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACA................................................................21114.0014040460
...................................................................GTGTGTGGG--ATACTGATTTTAGAGA.............................................................................................................................................................................................................................25111.0011200126
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACAG...............................................................2114.004030100
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACAGT..............................................................2214.004010300
...................................................................GTGTGTGGG--ATACTGATTTTAGAGAA............................................................................................................................................................................................................................2611.001000010
......................................................................................................................................................................................................................................................................CTGTACCAGGCTCCGACCAGCATT.............................2411.001010000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGA..............................................................2311.001010000
......................................................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGC..............................................................2311.001000010
.........................................................................................................................................................................................................................................CATCATTTTCCCCTCACAG...............................................................1911.001010000
.......................................................................................................................................................................................................................................CACATCATTTTCCCCTCACA................................................................2011.001000010
droWil2
TGGCTCAAAGATGGTTAAATCTTTTGCGTCAGGCGGCTTCACAGGATAATCAATGGTTGGATAAAAGGT--GGGGT--ACAACAACAACAAAAA--------------TAC-------------------GAATAT----------------------------------------AATG-----GTAAACTCTCTCT-C--------------TC-----------ATCTCTTATCATTTTCTCCTCACAGTGCGCGTTCACTTTATCAGAGTCCATCGAGCATAATTCGGCCCGATTGCTTTGGCTATTTACTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................................................................................................................................................................................................GTGCGCGTTCACTTTATCAGAGTCCAT.....................................2711.00100010
...............TAAATCTTTTGCGTCAGGC.........................................................................................................................................................................................................................................................................................1911.00100010
droVir3
TGGCCAACAGATGGTTGAATTTGCTGCGCCAGGCGGCCACACAGGATAATCAGTGGCTGGACAAAAGGT-TGGGGC--ACATTGATCTTCAAGAAACTCA-------CAGC-------------------CAGCTC----------------------------------------ATTT-----ACTCACTCTCT-------------------------------CTCTC---TTCTCT--CCCTCACAGTGCCCGCTGTCTGTACCAGAGCCCAGGCAACATTGTGCGACCCGATTGCTTTGGGCATTTGCTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................................................................................................................................................................TACCAGAGCCCAGGCAACAT..............................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..................................................CAGTGGCTGGACAAAAGGC-A....................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000001000000000000000000
.....AACAGATGGTTGAATTGA....................................................................................................................................................................................................................................................................................................18200.0510000000000000000100000000000000000000000000000000000000000000000000000000000000
droMoj3
TGACCAACAGATGGTTGAATTTGCTGCGCCAAGCGGCCAATCAGGATAATCAGTGGCTGGACAAGAGGT-AATTGA---------TCACTCCTA-------------------------------------------------------------TCTCTGTCT-CTCTTTCTCTTTCT---------GACT-----------------------------------CTCTCCCA-CTCTT--TATTTGTAGTGCTCGCTGCCTGTACCAGAGCCCGGGCAGCATTGTGCGACCCGATTGCTTTGGCTATTTGCTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
TGGCCAACAGATGGTTGAACTTGCTGCGCCAAGCGGCCACTCAAGACAATCAGTGGCTGGACAAAAGGT-AGGAGAGCACATTGATCTTGAAGAAACTTG-------CAGA-------------------AA--------------------------------------------ACTC-----TCTAATA----CT-CTCACTCCATTTCTCTAACTCTCCCTCTCTCTTATTTAACTT--CA-TTTTAGTGCGCGCTGTTTATATCAGAGCCCCGCCAGCATTGTGCGGCCCGATTGCTTTGGGTATCTGCTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
droAna3
TGGCCAACCGATGGCTTCAGCTCCTGCGGCAGGCCGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-GAGATAACACGTT-----CTAACCAACTGATATGAAACTACGAATGTTTTTATCGCTGTCGATTCG-----AACGATCTCTCATATAAC-----------------------------------------------------------------------------CGTAC--CTATTACAGTGCGCGGTGTCTGTACCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTTCGGCTATTTACTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................................GCTGTCGATTCG-----AACGATC.......................................................................................................................................................................1916.006000114
...............................................................................CGTT-----CTAACCAACTGATATGAAACTACG...........................................................................................................................................................................................................2813.003300000
...................................................................................................................GTTTTTATCGCTGTCGATTCG-----A.............................................................................................................................................................................2213.003000003
.........................................................................................................................ATCGCTGTCGATTCG-----AACGATC.......................................................................................................................................................................2213.003000003
...............................................................................CGTT-----CTAACCAACTGATATGAAACT..............................................................................................................................................................................................................2512.002000002
.........................................................................................................AACTACGAATGTTTTTATCGCT............................................................................................................................................................................................2212.002200000
............................................................................................................TACGAATGTTTTTATCGCTGT..........................................................................................................................................................................................2111.001100000
.................................................................................................TGATATGAAACTACGAATGT......................................................................................................................................................................................................2011.001000010
...............................................................................................................GAATGTTTTTATCGCTGTCGATTC....................................................................................................................................................................................2411.001100000
.........................................................................................................AACTACGAATGTTTTTATCGC.............................................................................................................................................................................................2111.001000001
............................................................................................................................GCTGTCGATTCG-----AACGATCT......................................................................................................................................................................2011.001000010
.......................................................................................................................TTATCGCTGTCGATTCG-----AACGATC.......................................................................................................................................................................2411.001000010
..........................................................................................AACCAACTGATATGAAACTACGAATGT......................................................................................................................................................................................................2711.001010000
...............................................................................CGTT-----CTAACCAACTGATAT....................................................................................................................................................................................................................1911.001100000
..............................................................................................AACTGATATGAAACTACGAATGT......................................................................................................................................................................................................2311.001100000
..................................................................................................................TGTTTTTATCGCTGTCGATTCG-----AACG..........................................................................................................................................................................2611.001100000
................................................................................GTT-----CTAACCAACTGATATGAAACTACG...........................................................................................................................................................................................................2711.001100000
...................................................................................................................GTTTTTATCGCTGTCGATTC....................................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................AAAGGCCCGATTGCTTCGGCT.......2111.001100000
...................................................................................................................GTTTTTATCGCTGTCGATTCG-----..............................................................................................................................................................................2111.001100000
.....................................................................................................ATGAAACTACGAATGTTTTTATCGC.............................................................................................................................................................................................2511.001100000
..............................................................................................AACTGATATGAAACTACGAAT........................................................................................................................................................................................................2111.001000001
..................................................................................T-----CTAACCAACTGATATGAAACT..............................................................................................................................................................................................................2211.001100000
........................................................................GATAACACGTT-----CTAACCAACTGATAT....................................................................................................................................................................................................................2611.001100000
.............................................................................................................ACGAATGTTTTTATCGCTGTCGAT......................................................................................................................................................................................2411.001100000
...................................................................................................................GTTTTTATCGCTGTCGATTCG-----AACGATC.......................................................................................................................................................................2811.001100000
.......................................................................................................GAAACTACGAATGTTTTTATCGC.............................................................................................................................................................................................2311.001100000
..................................................................................................GATATGAAACTACGAATGTTTT...................................................................................................................................................................................................2211.001000001
........................................................................................................................TATCGCTGTCGATTCG-----AACGATC.......................................................................................................................................................................2311.001100000
droBip1
TGGCCAACCGGTGGCTACAACTTCTAAGACAGGCCGCTGCCCAGGACAACCAGTGGCTGGACAAGAGGT-ACGATC-------GA---------ATCTC-----------T-------------------CGTATAATTCAAACGATCTCTCATATAAC-----------------------------------------------------------------------------CGTCT--CTCCTACAGTGCCCGGTGTTTGTATCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTTCGGCTACTTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
TGGCCAATCGCTGGCTCCAGCTGCTGAGGCAGGCGGCCGCCCAGGACAACCAGTGGCTCGACAAGAGGT--GAAGG--ACACTGATCTTAGAGAAAGGCA-------ACA---------------------------------------------------------------------------GCAAATTATATGTAA--------------TT-----------CTCTCACATCACTT--CCTTCACAGTGCGAGGTGCTTGTACCAGAGTCCCAGCAACATTCAGAGGCCCGATTGCTTTGGCTATTTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
TGGCCAACCGGTGGCTCCAGCTGCTGCGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACACTGATCTCGGAGAATCGCT-------CA-T-------------------T----------------------------------------CGCTCACTG-----ATCCATT-----------------------------------CTCTCACATCTCTT--CCCTCACAGCGCGCGGGGCCTGTACCAGAGCCCGGGGAGCATCCAGAGGCCCGACTGCTTCGGCTACCTCCTSizeHit CountTotal NormTotal
No Reads
droEle1
TGGCCAACCGATGGCTCCAACTCCTGCGGCAGGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-GCGGTT--TCATTGATCTTGGAGACCTTTT-------CGAC-------------------TATCCT----------------------------------------AGTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTTATAGCGCGAGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTTCGGATACCTACTSizeHit CountTotal NormTotal
No Reads
droRho1
TGGCTAACAGGTGGCTTCAACTGCTGAGACAAGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACATTGATCTTGGAGA-------------CGGC-------------------TGGCTT----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTTCGGCTACCTCCTSizeHit CountTotal NormTotal
No Reads
droBia1
TGGCCAACAGGTGGCTCCAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACACTGATCTCGGAGA-------------CTG---------------------------------------------------ATC-C-AT--TCCTTACTG-----ATCCACT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGCCCCACCAACATTCAGAGGCCCGATTGCTTTGGCTACCTACTSizeHit CountTotal NormTotal
No Reads
droTak1
TGGCCAACCGATGGCTCCAGCTGCTCAGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACACTGATCTCGGAGA-------------CTG---------------------------------------------------ATCCCGA---TCTTTACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCACCAACATTCAGAGGCCCGATTGCTTTGGCTACCTACTSizeHit CountTotal NormTotal
No Reads
droEug1
TGGCCAACAGGTGGCTCCAGCTGCTCCGACAAGCAGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACACTGATCTCGGAGA-------------TCGC-------------------TG-----------------------------ATC-CGATTT-----ACTG-----ATCTATT-----------------------------------CTCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAAAGCCCCACTAACATTCAGAGGCCCGACTGCTTCGGCTACCTACTSizeHit CountTotal NormTotal
No Reads
dm3
TGGCGAACAGGTGGCTCCAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTCGGCTACTTACTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...............................................................2214429.004429000032200022530000400000123000010653200000000002000101000000031000000000000000000001098001120005620182103936017674249358161500102631421302321241119011524013691589800000000000000000000000000000000000090200012800114341671740108700000388100900005070000000000000000001010138301700010000114013200308124014000012100000000000720002000000000013924235902100100003001000000000000200009230333000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..............................................................2211042.001042000011000000002000000003000000000000000000000000000000000000000000000000000000002001000001021105247200531172000000021003013002013309448000000000000000000001000000000000000192901200450110110460000009150100000702000000000000000000000000000010000000011021920002330400000110000000000010000000000100100483853950200010000302300000300000030003229841986201000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA................................................................211916.0091600003000000100000100000150000102190000000000000000000000000010000000000000000000001800000000442404293610521362001000110000032205035803932736000000000000000000000000000000000000847021004510021122045200000145204000020100000000000000000000001000002000000000101500000240000000200000000000010100000000000007561300100000002000000000000000000001500000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAG..............................................................................................................................................................................................................................231822.008220000000000000000000000000001300000000000000000000000000000000000000000000000000010000000001301152000011200000000100000020101200000711000000000000000000001000000000000000130021221022126382120000018150140000401800000200000000000200000000000000000004404500002340600001230000000000012000000000000000202016240458548000000400990000020001000700016030335200000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................241550.0055000000000000000000000000000005000000000000000000000000000001000000000000000000000000000000000005010000900000000000000000003000005800000000000000000000100000000000000091024001419016690000000034609000000600000000000000000100000000000100021004402000202010200000900000100101211001000000000003816101972515000100280390000021000003600023331114000110
...................................................................GT-TGGGGG--ACATTGATCTCGGA...............................................................................................................................................................................................................................221175.0017500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000002000001100000000000000000000000000000000000030010002060300000000630100000501500000000000000000000000010000000000001000000007103000007000000000002000000000000000136271413501000020090000010000000000001510102100000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..............................................................221136.00136000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000111131000306000100000000305001010201160000000000000000000000000000000000000101607003102050212000005000000000100000000000000000000000000000000000000000100000200000001000000000000000000000000000031320000000000000000000000000000000800020000000
...................................................................GT-TGGGGG--ACATTGATCTCGG................................................................................................................................................................................................................................211105.001050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000000010100000000000000000001000000010000000000000000004000205030200000004060000201300000000000000000000000000000000000002000200002001001011000000000000000000000000000042250253030000201000000000001050000712002000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------TC..............................................................................................................................................................................................................26179.007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.................................................................20177.00770000000000000000000000020000000000000000000000000000000000000000000000000000000030000000000201512000018000000000000001010000106022000000000000000000000000000000000000120100310201020000008000000000000000000000000000000000000000000000001000100001201000001000000000000000000000000000001000000000000000000000000000000000100000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..............................................................21167.006700000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000120000000000000010000000030110000000000000000000000000000000000001102001000000300000050020000000000000000000000000000000000000000000000000000003000000000000000000002000000000000000232300000000001021000001000000000001000000200000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...............................................................21147.0047000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000220030100009000000000000001000000001012000000000000000000000000000000000000340300000200020000001000000000100000000000000000000000000100000000000000000000201000000000000000000000000000000000000120000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..............................................................23126.0026000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000200000110000001000000503000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000011020000000000000000000100000000000200020000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA..............................................................23124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000001000000000120000000000000000000000000000000000000120100010000020000007000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCA..................................................................19121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000111000000000000000001000000131000000000000000000000000000000000000020000200001010000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAA...............................................................22121.0021000011000000000000000001000000000000000000000000000000000000000000000000000000001000000000050100000004000100000000102000000000000000000000000000000000000000000000000010000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAT...............................................................22118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000007113000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC..............................................................22118.0018000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000002000000101000000000000000000000000000000000000000020100000000060000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000001000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACC................................................................21118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000003023000000000000000000000000000000000000110100000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAA..............................................................................................................................................................................................................................23117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000000000000000100100000100000000000101000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000040000000201000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------CG..............................................................................................................................................................................................................26116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100100310000000000005100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000100000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------ATC.............................................................................................................................................................................................................27115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...............................................................22113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000000006000000000000000000000002000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACA................................................................20113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000010000000010000000000000000000000000000000000000000000000110100001000020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTC...................................................................18113.0013000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAG...............................................................19113.0013000000000000000000000001000000000000000000000000000000000000000000000000000000010000000010000010000000000000000000000000000000010000000000000000000000000000000000000100100000101000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAGA..............................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000030000000001030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100001000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGC-------------................................................................................................................................................................................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000001000000000000000000000000000000000210000000100000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------A...............................................................................................................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000021000000001000000000000000000300001000000
...................................................................GT-TGGGGG--ACATTGATCTCG.................................................................................................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000002100000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...............................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000100000000000000003000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------C.......................................................................................2218.008000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAGT..............................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000110000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACCT...............................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------C...............................................................................................................................................................................................................2517.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000012000000000000000000001000000000001000000000000000001000000000000000000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------CGAT-------------------C........................................................................................................................................................................................2917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACG................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGG-------------................................................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGAA.............................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ACATCACTT--CCCTCACAGT..............................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000100000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAC..............................................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGTG.............................................................2313.003000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................T-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------AA..............................................................................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------T...............................................................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000100000000000
...................................................................GT-TGGGGG--ACATTGATCT...................................................................................................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
.......................................................................GGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGGCGAACAGGTGGCTCCAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTCGGCTACTTACTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...............................................................2211695.0016959942093480473002202601000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................241737.0073744455213002003101603000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA................................................................211180.0018097210156200200100000
...................................................................GT-TGGGGG--ACATTGATCTCGGAG..............................................................................................................................................................................................................................231151.00151107184101010000306100
...................................................................GT-TGGGGG--ACATTGATCTCGGA...............................................................................................................................................................................................................................221134.001349222812300000005001
...................................................................GT-TGGGGG--ACATTGATCTCGGAGG-------------................................................................................................................................................................................................................24191.00914693600000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.................................................................20168.00689000154400000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCA..................................................................19140.0040500082700000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTC...................................................................18140.0040000073300000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...............................................................21129.00291000021700000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..............................................................22128.0028610051300000300000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------A...............................................................................................................................................................................................................25125.0025212100000000100000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...............................................................22120.0020190100000000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..............................................................22116.0016141100000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGG...............................................................................................................................................................................................................................22111.0011101000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------CG..............................................................................................................................................................................................................26110.001030401200000000000
...................................................................GT-TGGGGG--ACATTGATCT...................................................................................................................................................................................................................................18110.001000003700000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAA..............................................................................................................................................................................................................................2319.00962000000000001000
...................................................................GT-TGGGGG--ACATTGATCTC..................................................................................................................................................................................................................................1919.00940000500000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGC-------------................................................................................................................................................................................................................2419.00951300000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------C...............................................................................................................................................................................................................2518.00843000100000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCAC.................................................................1918.00800002600000000000
...................................................................GT-TGGGGG--ACATTGATCTCGG................................................................................................................................................................................................................................2118.00830010300010000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACA................................................................2017.00700010600000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAC..............................................................................................................................................................................................................................2316.00651000000000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCA..................................................................1816.00600000600000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..............................................................2316.00620002200000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..............................................................2115.00510001200000000001
...................................................................GT-TGGGGG--ACATTGATCTCG.................................................................................................................................................................................................................................2015.00500001400000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC..............................................................2214.00440000000000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...............................................................2014.00400002200000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA..............................................................2313.00330000000000000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGG..............................................................2213.00330000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------T...............................................................................................................................................................................................................2512.00220000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGT-------------................................................................................................................................................................................................................2412.00220000000000000000
........................................................................................................................................................................................................................................ACATCACTT--CCCTCACAG...............................................................1811.00100000100000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCAC.................................................................1811.00100000100000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAAT-------------................................................................................................................................................................................................................2411.00110000000000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGC...............................................................................................................................................................................................................................2211.00110000000000000000
....................................................................T-TGGGGG--ACATTGATCTCGGAG..............................................................................................................................................................................................................................2211.00101000000000000000
....................................................................T-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................2311.00110000000000000000
..............................................................................................................C-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTC...................................................................................2311.00100000100000000000
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAG...............................................................1911.00100000100000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------AA..............................................................................................................................................................................................................2611.00110000000000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGAA.............................................................2411.00110000000000000000
.........................................................................GGG--ACATTGATCTCGGAGG-------------................................................................................................................................................................................................................1911.00110000000000000000
...........................................................................................................CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCAT............................................................................................................................2011.00100000100000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACA................................................................1911.00100000100000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCCAG................................................................2130.33110000000000000000
droSec2
TGGCGAACAGGTGGCTCCAGCTGCTTAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCTGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTCGGCTACTTACTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................GT-TGGGGG--ACATTGATCTCTGAG..............................................................................................................................................................................................................................231124.001244103674
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...............................................................221119.001193521666
...................................................................GT-TGGGGG--ACATTGATCTCTGAGA-------------................................................................................................................................................................................................................24155.0055212527
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA................................................................21127.002780118
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..............................................................22123.0023001211
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..............................................................21119.001910216
...................................................................GT-TGGGGG--ACATTGATCTCTGA...............................................................................................................................................................................................................................2218.0081025
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..............................................................2314.0040004
...................................................................GT-TGGGGG--ACATTGATCTCTGAGA-------------CG..............................................................................................................................................................................................................2614.0040031
...................................................................GT-TGGGGG--ACATTGATCTCTG................................................................................................................................................................................................................................2114.0040004
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...............................................................2113.0033000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.................................................................2013.0031002
...................................................................GT-TGGGGG--ACATTGATCTCT.................................................................................................................................................................................................................................2012.0020002
...................................................................GT-TGGGGG--ACATTGATCTCTGAGA-------------A...............................................................................................................................................................................................................2512.0020002
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..............................................................2212.0021001
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAGA..............................................................2112.0021100
..........................................................................GG--ACATTGATCTCTGAGA-------------CGGC-------------------.........................................................................................................................................................................................2211.0010100
....................................................................T-TGGGGG--ACATTGATCTCTGAGA-------------................................................................................................................................................................................................................2311.0010100
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAG...............................................................1911.0010001
.............................................................................................A-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CT......................................................................................2411.0010001
....................................................................T-TGGGGG--ACATTGATCTCTGAG..............................................................................................................................................................................................................................2211.0011000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCA..................................................................1911.0011000
...................................................................GT-TGGGGG--ACATTGATCTCTGAGA-------------TT..............................................................................................................................................................................................................2611.0010001
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC..............................................................2211.0010001
........................................................................................................................................................................................................................................ACATCACTT--CCCTCACAGT..............................................................1911.0010001
...........................................................................................................CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCT....................................................................................2511.0011000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...............................................................2011.0011000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACA................................................................2011.0010001
...................................................................GT-TGGGGG--ACATTGATCTCTGAGC-------------................................................................................................................................................................................................................2411.0010001
...................................................................GT-TGGGGG--ACATTGATCTCTGAGA-------------C...............................................................................................................................................................................................................2511.0010001
...................................................................GT-TGGGGG--ACATTGATCTC..................................................................................................................................................................................................................................1911.0010001
droYak3
TGGCGAACAGGTGGCTCCAGCTGCTCCGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCATT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGATGTTTGTACCAGACGCCCAGCAACATTCAGCGGCCCGACTGCTTTGGCTACCTACTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...............................................................221781.007813523002736263730000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................241402.004023313261181580000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA................................................................211109.0010938485011610000
...................................................................GT-TGGGGG--ACATTGATCTCGGAG..............................................................................................................................................................................................................................231107.00107264302438101010
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..............................................................22136.0036292281210000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGG-------------................................................................................................................................................................................................................24135.0035350000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGA...............................................................................................................................................................................................................................22129.002984013850000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.................................................................20122.002288003300000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...............................................................21119.0019118000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------A...............................................................................................................................................................................................................25116.0016140011000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGC-------------................................................................................................................................................................................................................24111.001190100100000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACA................................................................2018.00817000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...............................................................2218.00871000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------CG..............................................................................................................................................................................................................2617.00760000100000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..............................................................2116.00602002200000
...................................................................GT-TGGGGG--ACATTGATCTCGG................................................................................................................................................................................................................................2115.00503002000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...............................................................2015.00504001000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..............................................................2314.00411011000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..............................................................2214.00404000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------C...............................................................................................................................................................................................................2513.00320010000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCA..................................................................1913.00330000000000
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAG...............................................................1913.00303000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA..............................................................2312.00201000100000
...................................................................GT-TGGGGG--ACATTGATCTCGGG...............................................................................................................................................................................................................................2212.00220000000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACA................................................................1912.00201001000000
........................................................................................................................................................................................................................................ACATCACTT--CCCTCACAG...............................................................1812.00202000000000
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAGT..............................................................2012.00202000000000
...................................................................GT-TGGGGG--ACATTGATCTC..................................................................................................................................................................................................................................1912.00220000000000
....................................................................T-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................2312.00202000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAC..............................................................................................................................................................................................................................2312.00210100000000
........................................................................GGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................2011.00110000000000
....................................................................T-TGGGGG--ACATTGATCTCGGAGG-------------................................................................................................................................................................................................................2311.00110000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACC................................................................2111.00110000000000
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACA................................................................1811.00101000000000
...................................................................GT-TGGGGG--ACATTGATCTCG.................................................................................................................................................................................................................................2011.00100000100000
...................................................................GT-TGGGGG--ACATTGATCTCGGAT..............................................................................................................................................................................................................................2311.00100000100000
...................................................................................................................................................................................................................................CTCTCACATCACTT--CCCTCACAG...............................................................2311.00101000000000
...................................................................GT-TGGGGG--ACATTGATCT...................................................................................................................................................................................................................................1811.00100001000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGG..............................................................2211.00110000000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGT-------------................................................................................................................................................................................................................2411.00110000000000
....................................................................T-TGGGGG--ACATTGATCTCGGA...............................................................................................................................................................................................................................2111.00101000000000
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAA...............................................................2211.00110000000000
.........................................................................GGG--ACATTGATCTCGGAG..............................................................................................................................................................................................................................1811.00110000000000
droEre2
TGGCGAACAGGTGGCTCCAGCTGCTCAGACAGGCGGCCGCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGG--ACATTGATCTCGGAGA-------------CGGC-------------------GGTTTA----------------------------------------ACTG-----ATCCAAT-----------------------------------CTCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCTGCGGCCGGACTGCTTTGGCTATCTGCTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...............................................................221791.0079123146663584050
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................241297.00297531314412210
...................................................................GT-TGGGGG--ACATTGATCTCGGAG..............................................................................................................................................................................................................................231205.0020560172531270
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA................................................................211124.001244141313620
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..............................................................221101.001013510111710
...................................................................GT-TGGGGG--ACATTGATCTCGG................................................................................................................................................................................................................................21133.0033002013180
...................................................................GT-TGGGGG--ACATTGATCTCGGA...............................................................................................................................................................................................................................22126.002610106180
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...............................................................21120.002014100140
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.................................................................2019.0092000070
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..............................................................2117.0071010140
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..............................................................2217.0072000050
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...............................................................2017.0073011020
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..............................................................2316.0060000060
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------CG..............................................................................................................................................................................................................2615.0050000050
...................................................................GT-TGGGGG--ACATTGATCTCGGAA..............................................................................................................................................................................................................................2315.0050010130
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCA..................................................................1913.0030000030
...................................................................GT-TGGGGG--ACATTGATCTCGGAGC-------------................................................................................................................................................................................................................2413.0030010020
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAG...............................................................1913.0031000020
...................................................................GT-TGGGGG--ACATTGATCTCGGAT..............................................................................................................................................................................................................................2313.0030000030
...................................................................................................................................................................................................................................CTCTCACATCACTT--CCCTCACAG...............................................................2312.0020100010
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------C...............................................................................................................................................................................................................2512.0020000020
...................................................................GT-TGGGGG--ACATTGATCTC..................................................................................................................................................................................................................................1912.0020000020
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------A...............................................................................................................................................................................................................2512.0020000110
...................................................................GT-TGGGGG--ACATTGATCTCGGAGT-------------................................................................................................................................................................................................................2412.0020010010
........................................................................................................................................................................................................................................ACATCACTT--CCCTCACAG...............................................................1812.0021000010
.......................................................................................................................................................................................................................................CACATCACTT--CCCTCACAGT..............................................................2012.0020000020
...................................................................GT-TGGGGG--ACATTGATCTCG.................................................................................................................................................................................................................................2012.0020000200
..............................................................................................................................................................................................AT-----------------------------------CTCTCACATCACTT--CCCTCACAG...............................................................2511.0011000000
...................................................................GT-TGGGGG--ACATTGATCTCGGAGA-------------T...............................................................................................................................................................................................................2511.0010000010
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGC..............................................................2311.0010000010
...................................................................GT-TGGGGG--ACATTGATCTCGGT...............................................................................................................................................................................................................................2211.0010000010
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...............................................................2211.0010100000
....................................................................T-TGGGGG--ACATTGATCTCGGAG..............................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCACA................................................................2011.0011000000
......................................................................TGGGGG--ACATTGATCTCGG................................................................................................................................................................................................................................1911.0011000000
...................................................................GT-TGGGGG--ACATTGATCTCGT................................................................................................................................................................................................................................2111.0011000000
....................................................................T-TGGGGG--ACATTGATCTCGGAGA-------------................................................................................................................................................................................................................2311.0011000000
......................................................................................................................................................................................................................................TCACATCACTT--CCCTCAC.................................................................1811.0011000000
...................................................................................................................................GTTTA----------------------------------------ACTG-----ATCCAAT-----------------------------------CTCTC...................................................................................2111.0010000010
....................................................................................................................................................................................................................................TCTCACATCACTT--CCCTCACG................................................................2111.0011000000
............................................................................................................................................................................................................................................................TGCGCGGTGCTTGTACCA.............................................1811.0011000000
.....................................................................................................................................................................................................................................CTCACATCACTT--CCCTCAC.................................................................1911.0010000010
...................................................................GT-TGGGGG--ACATTGATCTCGAGA..............................................................................................................................................................................................................................2311.0010000010
...................................................................GT-TGGGGG--ACATTGATCTCGGG...............................................................................................................................................................................................................................2211.0010000010
..............................................................................................................C-------------------GGTTTA----------------------------------------ACTG-----ATCCAAT-----------------------------------CT......................................................................................2011.0010000010
......................................................................................................................................................................................................................................................................................GCAACATTCTGCGGCCGGA..................1911.0010000100

Generated: 10/20/2015 at 07:10 PM