ID:

dps-mir-2537

 Coordinate:

XL_group1e:8362508-8362587 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATACCAGAATCATGAACGATTTATGTAGCTAACGGACAACCGTCTATATTGTTCTAAAAATCCAAAATAGTCGCTTGTCCTTTAGCCGCTGCGATCCACTTGCCAACGATCGACTAACAATCCCAGGGAGAACGATCCGTCGACGAT

***********************************************...((((...((.(((((.((((((.((.((((.(((...........))).)))).)).)))))).))))).))...)))).....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902011

testis

 M040

female body

 V112

male body		 GSM444067

head

 M062

head

 M059

embryo

 SRR902010

ovaries

 GSM343916

embryo

 SRR902012

CNS imaginal disc

 M022

male body
.................................................................................................AAATAGTCGCTTGTCCTTTAGC............................................................. 22 0 1 401.00 401 325 19 9 9 15 9 6 4 5 0
.................................................................................................AAATAGTCGCTTGTCCTTTAG.............................................................. 21 0 1 326.00 326 289 12 13 6 1 1 3 0 0 1
................................................................................................AAAATAGTCGCTTGTCCTTTAG.............................................................. 22 0 1 76.00 76 72 2 0 1 0 0 0 0 0 1
..............................................................TAACGGACAACCGTCTATATTG................................................................................................ 22 0 1 76.00 76 59 11 3 3 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGT............................................................. 22 1 1 19.00 19 19 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGA............................................................. 22 1 1 17.00 17 17 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGCC............................................................ 23 0 1 16.00 16 14 0 1 1 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCCTTTAGC............................................................. 23 0 1 14.00 14 12 0 1 1 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCCTTTAGT............................................................. 23 1 1 14.00 14 14 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGCT............................................................ 23 1 1 11.00 11 7 0 2 0 0 1 0 1 0 0
..............................................................TAACGGACAACCGTCTATATT................................................................................................. 21 0 1 10.00 10 9 0 0 1 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGA............................................................................................... 23 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGCA............................................................ 23 1 1 8.00 8 7 0 0 1 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCCTTTAGA............................................................. 23 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATAT.................................................................................................. 20 0 1 4.00 4 2 0 0 2 0 0 0 0 0 0
..................................................................................................AATAGTCGCTTGTCCTTTAGC............................................................. 21 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAA.............................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGTTC........................................................... 24 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCCTTTA............................................................... 21 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGT............................................................................................... 23 0 1 4.00 4 2 1 0 0 1 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGTC.............................................................................................. 24 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTCCC.............................................................................................. 24 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGCCCC.......................................................... 25 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTA............................................................... 20 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGCCC........................................................... 24 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGTCCC.......................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGTAA............................................................................................. 25 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGTT.............................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................ACGGACAACCGTCTATATTG................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGAA.............................................................................................. 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGTT............................................................ 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCCTTTCTCC............................................................ 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGTC............................................................ 23 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGTTT........................................................... 24 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCACTTGTCCTTTAGC............................................................. 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0
............................................ATGAACGATTTATGTAGC...................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTATC............................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................AAATAGTCGCTTATCCTTTAGC............................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................................AAATAGTCGCTTATCCTTTAG.............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGGCCTTTAG.............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................AATAGTCGCTTGTCCTTTAG.............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGTTTGTCCTTTAGC............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TACCGGACAACCGTCTATATTGA............................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGTTCT............................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................AAAATAGCCGCTTGTCCTTTAGC............................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGTTTTTTAG.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AGATAGTCGCTTGTCCTTTAGC............................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCCTTTAGG............................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTGAAA............................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAACAGGCGCTTGTCCTGTAGC............................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGGCCTTTAG.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................AACGGACAACCGTCTATATTG................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATAA.................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TAACGGACAACCGTCTATATTCT............................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................AAATAGTCGCTTGTCCTTTCGC............................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................AAATAGACGCTTGTCCTTTAAC............................................................. 22 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAAC............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTT............................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTTGC............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................AACGGACAACCGTCTATATTGT............................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCTCTTGTCCTTTAGA............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTTTACTTTAGC............................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTTTCCTTTAG.............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TGACGGACAACCGTCTATATTGT............................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................AAATAGTCGCCTGTCCTTTA............................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTTG.............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTCCTTTAGTCC........................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................AAATAGTCGCTTGTTTTTTAG.............................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............TGCAACCGAAAAAAGCATC..................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0
...GATAAGTTCTGCAGGCAAAAA............................................................................................................................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TATATTCTTCTAAAACTCCA................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCCTTTTTT............................................................. 23 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................AAATCGCTTGTCCTTTAGC............................................................. 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGGCAGAACCATCCGTCG..... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0
................................................................................................AAAATAGTCGCTTGTCTTTAG............................................................... 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................GGGCCGTTGCGATCCACTT.............................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................ATTAACAATCCCGGGGCG................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......TAGTTCCGCACTGAAAAAAA.......................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAGCTAATCAAGACGTTAGTTTTTTTCGTAGCGTATGGTCTTAGTACTTGCTAAATACATCGATTGCCTGTTGGCAGATATAACAAGATTTTTAGGTTTTATCAGCGAACAGGAAATCGGCGACGCTAGGTGAACGGTTGCTAGCTGATTGTTAGGGTCCCTCTTGCTAGGCAGCTGCTA

**********************************************...((((...((.(((((.((((((.((.((((.(((...........))).)))).)).)))))).))))).))...)))).....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M040

female body
.......................................................TTAATCGATTGCCTGTAGG.......................................................................................................... 19 3 20 0.10 2 2
.....................................................................................................................CGGCTTCGCTAGTTGAACG............................................ 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 XL_group1e:8362458-8362637 - dps-mir-2537 Known_mirbase TTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATACCAGAATCATGAACGATTTATGTAGCTAACGGACAACCGTCTATATTGTTCTAAAAATCCAAAATAGTCGCTTGTCCTTTAGCCGCTGCGATCCACTTGCCAACGATCGACTAACAATCCCAGGGAGAACGATCCGTCGACGAT
droPer2 scaffold_13:201795-201958 + dpe_135 confident TTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATTCCAGAATCATAAACGATTTATGTAGCTAACGGACAACCTTCTATATTGTTCTGAAAATCCAAAATAGTCGCTTGTCCTTTAGCTGCTGCGATCCACTTGGCAACGATCG----------------AGCACGAACCGTCGACGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATACCAGAATCATGAACGATTTATGTAGCTAACGGACAACCGTCTATATTGTTCTAAAAATCCAAAATAGTCGCTTGTCCTTTAGCCGCTGCGATCCACTTGCCAACGATCGACTAACAATCCCAGGGAGAACGATCCGTCGACGATSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................AAATAGTCGCTTGTCCTTTAGC.............................................................221401.0040101991549963255
.................................................................................................AAATAGTCGCTTGTCCTTTAG..............................................................211326.0032611211061332890
................................................................................................AAAATAGTCGCTTGTCCTTTAG..............................................................22176.007612000100720
..............................................................TAACGGACAACCGTCTATATTG................................................................................................22176.0076011000330590
.................................................................................................AAATAGTCGCTTGTCCTTTAGT.............................................................22119.001900000000190
.................................................................................................AAATAGTCGCTTGTCCTTTAGA.............................................................22117.001700000000170
.................................................................................................AAATAGTCGCTTGTCCTTTAGCC............................................................23116.001600000110140
................................................................................................AAAATAGTCGCTTGTCCTTTAGC.............................................................23114.001400000110120
................................................................................................AAAATAGTCGCTTGTCCTTTAGT.............................................................23114.001400000000140
.................................................................................................AAATAGTCGCTTGTCCTTTAGCT............................................................23111.00110010102070
..............................................................TAACGGACAACCGTCTATATT.................................................................................................21110.00100000010090
..............................................................TAACGGACAACCGTCTATATTGA...............................................................................................2319.0090000000090
.................................................................................................AAATAGTCGCTTGTCCTTTAGCA............................................................2318.0080000010070
................................................................................................AAAATAGTCGCTTGTCCTTTAGA.............................................................2318.0080000000080
..............................................................TAACGGACAACCGTCTATAT..................................................................................................2014.0040000020020
..................................................................................................AATAGTCGCTTGTCCTTTAGC.............................................................2114.0040400000000
.................................................................................................AAATAGTCGCTTGTCCTTTAA..............................................................2114.0040000000040
.................................................................................................AAATAGTCGCTTGTCCTTTAGTTC...........................................................2414.0040000000040
................................................................................................AAAATAGTCGCTTGTCCTTTA...............................................................2114.0040000010030
..............................................................TAACGGACAACCGTCTATATTGT...............................................................................................2314.0040101000020
..............................................................TAACGGACAACCGTCTATATTGTC..............................................................................................2413.0030000000030
..............................................................TAACGGACAACCGTCTATATTCCC..............................................................................................2413.0030000000030
.................................................................................................AAATAGTCGCTTGTCCTTTA...............................................................2013.0030000001020
.................................................................................................AAATAGTCGCTTGTCCTTTAGCCC...........................................................2412.0020001000010
..............................................................TAACGGACAACCGTCTATATTGTAA.............................................................................................2512.0020000000020
..............................................................TAACGGACAACCGTCTATATTGTT..............................................................................................2412.0020000000020
................................................................ACGGACAACCGTCTATATTG................................................................................................2012.0020000000020
..............................................................TAACGGACAACCGTCTATATTGAA..............................................................................................2412.0020000000020
.................................................................................................AAATAGTCGCTTGTCCTTTAGTT............................................................2312.0020000000020
.................................................................................................AAATAGTCGCTTGTCCTTTAGTTT...........................................................2412.0020000000020
............................................ATGAACGATTTATGTAGC......................................................................................................................1811.0010000000010
..................................................................................................AATAGTCGCTTGTCCTTTAG..............................................................2011.0010000000010
..............................................................TAACGGACAACCGTCTATATTGTTCT............................................................................................2611.0010000000010
................................................................................................AAAATAGTCGCTTGTCCTTTAGG.............................................................2311.0010000000010
..............................................................TAACGGACAACCGTCTATATTGAAA.............................................................................................2511.0010000000010
...............................................................AACGGACAACCGTCTATATTG................................................................................................2111.0010000000010
..............................................................TAACGGACAACCGTCTATAA..................................................................................................2011.0010000000010
.................................................................................................AAATAGTCGCTTGTCCTTTT...............................................................2011.0010000001000
...............................................................AACGGACAACCGTCTATATTGT...............................................................................................2211.0010000000010
................................................................................................AAAATAGTCGCTTGTCCTTTTTT.............................................................2340.2510000000010
droPer2
TTCGATTAGTTCTGCAATCAAAAAAAGCATCGCATTCCAGAATCATAAACGATTTATGTAGCTAACGGACAACCTTCTATATTGTTCTGAAAATCCAAAATAGTCGCTTGTCCTTTAGCTGCTGCGATCCACTTGGCAACGATCG----------------AGCACGAACCGTCGACGATSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................TAACGGACAACCTTCTATATTG................................................................................................22115.0015240243
.................................................................................................AAATAGTCGCTTGTCCTTTAG..............................................................21110.0010000316
.................................................................................................AAATAGTCGCTTGTCCTTTAGC.............................................................2213.003011010
..............................................................TAACGGACAACCTTCTATATTGA...............................................................................................2313.003100002
.................................................................................................AAATAGTCGCTTGTCCTTTAGCT............................................................2313.003000012
...............................................................AACGGACAACCTTCTATATTG................................................................................................2112.002020000
...............................................................AACGGACAACCTTCTATATTGT...............................................................................................2211.001100000
.................................................................................................AAATAGTCGCTTGTCCTTTAGCC............................................................2311.001000001

Generated: 10/20/2015 at 07:03 PM