ID:

dps-mir-2514

 Coordinate:

Unknown_group_258:6689-6768 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.0 -25.9 -25.8

Flybase annnotation

intergenic

No Repeatable elements found

-26.0 -25.9 -25.8

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. Unknown_group_258:6734-6756 -
  2. Unknown_group_258:15752-15774 -
  3. Unknown_group_30:8486-8508 +
  4. Unknown_group_322:12613-12635 -
  5. XR_group8:4351193-4351215 -
  6. Unknown_singleton_2748:24089-24111 -
  7. Unknown_singleton_2748:29684-29706 -
  8. Unknown_singleton_1634:954-976 +
  9. Unknown_singleton_2804:639-661 -
star
  1. Unknown_group_258:6704-6725 -
  2. Unknown_group_258:15722-15743 -

Sense Strand Reads

TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGAACCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCGCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTA
***********************************************....((((..((...(((((((((((((((...((.....((((....))))))....)))))))))))))))..))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 SRR902010
ovaries
 GSM343916
embryo
 V112
male body
..............................................................TTACAGCTTCAATACAGTGGTCC............................................................................................... 23 0 9 11.89 107 97 3 0 6 1
..............................................................TTACAGCTTCAATACAGTGGTC................................................................................................ 22 0 9 7.89 71 65 1 0 4 1
..............................................................TTACAGCTTCAATACAGTGGT................................................................................................. 21 0 9 2.67 24 20 1 1 2 0
..............................................................TTACAGCTTCAATACAGTGG.................................................................................................. 20 0 9 2.22 20 20 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCA.............................................................................................. 24 0 3 2.00 6 6 0 0 0 0
.............TACAATTTTACAAATTCAGGCGCAAA............................................................................................................................................. 26 0 1 2.00 2 0 0 2 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCATC............................................................................................ 26 0 3 1.33 4 4 0 0 0 0
.....................TACAAATTCAGGCGCAAAAGAGAA....................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCAT............................................................................................. 25 0 3 1.00 3 3 0 0 0 0
...............................................................TACAGCTTCAATACAGTGGTCC............................................................................................... 22 0 9 0.78 7 7 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCATCGC.......................................................................................... 28 0 3 0.67 2 2 0 0 0 0
....................................................................................................................GTGAAAACAAGGTTAATGTGTGCCC....................................... 25 0 3 0.67 2 2 0 0 0 0
...............................................................TACAGCTTCAATACAGTGGTCCATCGC.......................................................................................... 27 0 3 0.67 2 2 0 0 0 0
.............................................................................................AAGGCGCCTTTCGTGTTGGAGA................................................................. 22 1 2 0.50 1 0 1 0 0 0
.................................................................................................................................TAATGTGTGCCCTGATCGG................................ 19 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................TGTGCCCTGATCGGAGGGGGATTGG..................... 25 0 2 0.50 1 1 0 0 0 0
.............................................................................................AAGGCGCCTTTCGTGTTGGAGC................................................................. 22 0 2 0.50 1 0 1 0 0 0
...........................................................................................................................CAAGGTTAATGTGTGCCCTGATCGGAG.............................. 27 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTGA.................................... 27 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTG..................................... 26 0 2 0.50 1 1 0 0 0 0
..........................................................................TACAGTGGTCCATCGCTGAAAGGCGC................................................................................ 26 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCC........................................ 23 0 3 0.33 1 1 0 0 0 0
....................................................................................................................GTGAAAACAAGGTTAATGTGTGC......................................... 23 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGC......................................... 22 0 3 0.33 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCATCG........................................................................................... 27 0 3 0.33 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTG................................................................................................... 19 0 9 0.33 3 2 1 0 0 0
.............................................................CTTACAGCTTCAATACAGTGGT................................................................................................. 22 0 7 0.14 1 1 0 0 0 0
................................................GGAAATTGGGTCACTTACAGCT.............................................................................................................. 22 0 8 0.13 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGA................................................................................................. 21 1 9 0.11 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGGC................................................................................................ 22 2 9 0.11 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTA................................................................................................ 22 1 9 0.11 1 0 0 0 1 0
...............................................................TACAGCTTCAATACAGTGGTC................................................................................................ 21 0 9 0.11 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCA............................................................................................... 23 1 9 0.11 1 1 0 0 0 0
...............................................................TACAGCTTCAATACAGTGGT................................................................................................. 20 0 9 0.11 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTCGT................................................................................................. 21 3 9 0.11 1 1 0 0 0 0

Anti-sense strand reads

ACGCGTACAGAAAATGTTAAAATGTTTAAGTCCGCGTTTTCTCTTGGCCCTTTAACCCAGTGAATGTCGAAGTTATGTCACCAGGTAGCGACTTTCCGCGGAAAGCACAACCTCGACACTTTTGTTCCAATTACACACGGGACTAGCCTCCCCCTAACCATTTACCCCCCCACTAGAGAT
**************************************************....((((..((...(((((((((((((((...((.....((((....))))))....)))))))))))))))..))..))))*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
...............................................CCCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 25 0 3 4.00 12 5 5 2
.............................................GGCCCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 27 0 2 2.50 5 5 0 0
.................................................CTTTAACCCAGTGAATGTCGAAG............................................................................................................ 23 0 8 2.38 19 13 6 0
................................................CCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 24 0 8 2.13 17 17 0 0
....................................................................................................GAAAGCACAACCTCGACACTTTTGTT...................................................... 26 0 2 0.50 1 1 0 0
.............................................................................................................................TCCAATTACACACGGGACTAGCCTC.............................. 25 0 2 0.50 1 1 0 0
.......................................................................................................AGCACAACCTCGACACTTTTGTTC..................................................... 24 0 2 0.50 1 1 0 0
.......................................................................................................AGCACAACCTCGACACTTTTGTT...................................................... 23 0 2 0.50 1 1 0 0
....................................................................................................................................ACACACGGGACTAGCCTCCCCCTAACCAT................... 29 0 2 0.50 1 1 0 0
.......................................................................................................................................CACGGGACTAGCCTCCCCCTAACCATT.................. 27 0 2 0.50 1 1 0 0
...........................................................................................................................................GGACTAGCCTCCCCCTAACCAT................... 22 0 2 0.50 1 1 0 0
..............................................GCCCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 26 0 2 0.50 1 1 0 0
.............................................................................................TTCCGCGGAAAGCACAACCTCGACACT............................................................ 27 0 2 0.50 1 1 0 0
........................................................................................................GCACAACCTCGACACTTTTGTTCCAAT................................................. 27 0 2 0.50 1 0 0 1
.......................................................................................................................................CACGGGACTAGCCTCCCCCTAACCAT................... 26 0 2 0.50 1 1 0 0
........................................................................................................................TTTGTTCCAATTACACACGGGACTAGCCT............................... 29 0 2 0.50 1 1 0 0
.........................................................................................................CACAACCTCGACACTTTTGTT...................................................... 21 0 2 0.50 1 1 0 0
.......................................................................................................................................................CCCTAACCATTTACCCCCCCACT...... 23 0 2 0.50 1 1 0 0
.............................................................GAATGTCGAAGTTATGTCACCAGGTAG............................................................................................ 27 0 3 0.33 1 0 0 1
........................................................................TTATGTCACCAGGTAGCGACT....................................................................................... 21 0 3 0.33 1 1 0 0
..............................................................................CACCAGGTAGCGACTTTCCGCG................................................................................ 22 0 3 0.33 1 1 0 0
..................................................TTTAACCCAGTGAATGTCGAAG............................................................................................................ 22 0 8 0.25 2 2 0 0
................................................CCTTTAACCCAGTGAATGTCGAA............................................................................................................. 23 0 8 0.25 2 2 0 0
.............................................................GAATGTCGAAGTTATGTCACCAG................................................................................................ 23 0 7 0.14 1 0 1 0
................................................ACTTTAACCCAGTGAATGTCGAAG............................................................................................................ 24 1 8 0.13 1 1 0 0
................................................CCTTTAACCCAGTGAATGTCGAAGT........................................................................................................... 25 0 8 0.13 1 1 0 0
mature
  1. Unknown_group_258:6734-6756 -
  2. Unknown_group_258:15752-15774 -
  3. Unknown_group_30:8486-8508 +
  4. Unknown_group_322:12613-12635 -
  5. XR_group8:4351193-4351215 -
  6. Unknown_singleton_2748:24089-24111 -
  7. Unknown_singleton_2748:29684-29706 -
  8. Unknown_singleton_1634:954-976 +
  9. Unknown_singleton_2804:639-661 -
star
  1. Unknown_group_258:6704-6725 -
  2. Unknown_group_258:15722-15743 -

Sense Strand Reads

TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAGAGAGAACCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCGCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTA
***********************************************....((((..((...(((((((((((((((...((.....((((....))))))....)))))))))))))))..))..))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 M059
embryo
 GSM343916
embryo
 V112
male body		 SRR902010
ovaries
..............................................................TTACAGCTTCAATACAGTGGTCC............................................................................................... 23 0 9 11.89 107 97 3 6 1 0
..............................................................TTACAGCTTCAATACAGTGGTC................................................................................................ 22 0 9 7.89 71 65 1 4 1 0
..............................................................TTACAGCTTCAATACAGTGGT................................................................................................. 21 0 9 2.67 24 20 1 2 0 1
..............................................................TTACAGCTTCAATACAGTGG.................................................................................................. 20 0 9 2.22 20 20 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCA.............................................................................................. 24 0 3 2.00 6 6 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCATC............................................................................................ 26 0 3 1.33 4 4 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCAT............................................................................................. 25 0 3 1.00 3 3 0 0 0 0
...............................................................TACAGCTTCAATACAGTGGTCC............................................................................................... 22 0 9 0.78 7 7 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCATCGC.......................................................................................... 28 0 3 0.67 2 2 0 0 0 0
....................................................................................................................GTGAAAACAAGGTTAATGTGTGCCC....................................... 25 0 3 0.67 2 2 0 0 0 0
...............................................................TACAGCTTCAATACAGTGGTCCATCGC.......................................................................................... 27 0 3 0.67 2 2 0 0 0 0
.................................................................................................................................TAATGTGTGCCCTGATCGG................................ 19 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTG..................................... 26 0 2 0.50 1 1 0 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTGA.................................... 27 0 2 0.50 1 1 0 0 0 0
.............................................................................................AAGGCGCCTTTCGTGTTGGAGA................................................................. 22 1 2 0.50 1 0 1 0 0 0
...........................................................................................................................CAAGGTTAATGTGTGCCCTGATCGGAG.............................. 27 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................TGTGCCCTGATCGGAGGGGGATTGG..................... 25 0 2 0.50 1 1 0 0 0 0
.............................................................................................AAGGCGCCTTTCGTGTTGGAGC................................................................. 22 0 2 0.50 1 0 1 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCC........................................ 23 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................TGAAAACAAGGTTAATGTGTGC......................................... 22 0 3 0.33 1 1 0 0 0 0
..........................................................................TACAGTGGTCCATCGCTGAAAGGCGC................................................................................ 26 0 3 0.33 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCCATCG........................................................................................... 27 0 3 0.33 1 1 0 0 0 0
....................................................................................................................GTGAAAACAAGGTTAATGTGTGC......................................... 23 0 3 0.33 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTG................................................................................................... 19 0 9 0.33 3 2 1 0 0 0
.............................................................CTTACAGCTTCAATACAGTGGT................................................................................................. 22 0 7 0.14 1 1 0 0 0 0
................................................GGAAATTGGGTCACTTACAGCT.............................................................................................................. 22 0 8 0.13 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGA................................................................................................. 21 1 9 0.11 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTCA............................................................................................... 23 1 9 0.11 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTCGT................................................................................................. 21 3 9 0.11 1 1 0 0 0 0
..............................................................TTACAGCTTCAATACAGTGGTA................................................................................................ 22 1 9 0.11 1 0 0 1 0 0
..............................................................TTACAGCTTCAATACAGTGGGC................................................................................................ 22 2 9 0.11 1 1 0 0 0 0
...............................................................TACAGCTTCAATACAGTGGT................................................................................................. 20 0 9 0.11 1 1 0 0 0 0
...............................................................TACAGCTTCAATACAGTGGTC................................................................................................ 21 0 9 0.11 1 1 0 0 0 0

Anti-sense strand reads

ACGCGTACAGAAAATGTTAAAATGTTTAAGTCCGCGTTCTCTCTTGGCCCTTTAACCCAGTGAATGTCGAAGTTATGTCACCAGGTAGCGACTTTCCGCGGAAAGCACAACCTCGACACTTTTGTTCCAATTACACACGGGACTAGCCTCCCCCTAACCATTTACCCCCCCACTAGAGAT
**************************************************....((((..((...(((((((((((((((...((.....((((....))))))....)))))))))))))))..))..))))*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M040
female body
 SRR902010
ovaries
 M059
embryo
...............................................CCCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 25 0 3 4.00 12 5 5 2
.............................................GGCCCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 27 0 2 2.50 5 5 0 0
.................................................CTTTAACCCAGTGAATGTCGAAG............................................................................................................ 23 0 8 2.38 19 13 6 0
................................................CCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 24 0 8 2.13 17 17 0 0
.................TAAAATGTTTAAGTCCGCGTTCTCTCT........................................................................................................................................ 27 0 1 2.00 2 0 2 0
...............GTTAAAATGTTTAAGTCCGCGTTCTCTC......................................................................................................................................... 28 0 1 1.00 1 1 0 0
....................................................................................................GAAAGCACAACCTCGACACTTTTGTT...................................................... 26 0 2 0.50 1 1 0 0
........................................................................................................................TTTGTTCCAATTACACACGGGACTAGCCT............................... 29 0 2 0.50 1 1 0 0
.......................................................................................................................................CACGGGACTAGCCTCCCCCTAACCAT................... 26 0 2 0.50 1 1 0 0
.......................................................................................................................................................CCCTAACCATTTACCCCCCCACT...... 23 0 2 0.50 1 1 0 0
....................................................................................................................................ACACACGGGACTAGCCTCCCCCTAACCAT................... 29 0 2 0.50 1 1 0 0
.......................................................................................................................................CACGGGACTAGCCTCCCCCTAACCATT.................. 27 0 2 0.50 1 1 0 0
.............................................................................................................................TCCAATTACACACGGGACTAGCCTC.............................. 25 0 2 0.50 1 1 0 0
...........................................................................................................................................GGACTAGCCTCCCCCTAACCAT................... 22 0 2 0.50 1 1 0 0
.......................................................................................................AGCACAACCTCGACACTTTTGTTC..................................................... 24 0 2 0.50 1 1 0 0
........................................................................................................GCACAACCTCGACACTTTTGTTCCAAT................................................. 27 0 2 0.50 1 0 0 1
..............................................GCCCTTTAACCCAGTGAATGTCGAAG............................................................................................................ 26 0 2 0.50 1 1 0 0
.........................................................................................................CACAACCTCGACACTTTTGTT...................................................... 21 0 2 0.50 1 1 0 0
.............................................................................................TTCCGCGGAAAGCACAACCTCGACACT............................................................ 27 0 2 0.50 1 1 0 0
.......................................................................................................AGCACAACCTCGACACTTTTGTT...................................................... 23 0 2 0.50 1 1 0 0
........................................................................TTATGTCACCAGGTAGCGACT....................................................................................... 21 0 3 0.33 1 1 0 0
.............................................................GAATGTCGAAGTTATGTCACCAGGTAG............................................................................................ 27 0 3 0.33 1 0 0 1
..............................................................................CACCAGGTAGCGACTTTCCGCG................................................................................ 22 0 3 0.33 1 1 0 0
................................................CCTTTAACCCAGTGAATGTCGAA............................................................................................................. 23 0 8 0.25 2 2 0 0
..................................................TTTAACCCAGTGAATGTCGAAG............................................................................................................ 22 0 8 0.25 2 2 0 0
.............................................................GAATGTCGAAGTTATGTCACCAG................................................................................................ 23 0 7 0.14 1 0 1 0
................................................CCTTTAACCCAGTGAATGTCGAAGT........................................................................................................... 25 0 8 0.13 1 1 0 0
................................................ACTTTAACCCAGTGAATGTCGAAG............................................................................................................ 24 1 8 0.13 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_258:15657-15836 - dps-miR-2514 TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGAACCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCGCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTA
droPer2 scaffold_119:28610-28789 - TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGACCCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCTCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGAACCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCGCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................TTACAGCTTCAATACAGTGGTCC...............................................................................................23911.8910709730601000
..............................................................TTACAGCTTCAATACAGTGGTC................................................................................................2297.897106510401000
..............................................................TTACAGCTTCAATACAGTGGT.................................................................................................2192.672402010200100
..............................................................TTACAGCTTCAATACAGTGG..................................................................................................2092.222002000000000
..............................................................TTACAGCTTCAATACAGTGGTCCA..............................................................................................2432.0060600000000
.............TACAATTTTACAAATTCAGGCGCAAA.............................................................................................................................................2612.0020000000200
..............................................................TTACAGCTTCAATACAGTGGTCCATC............................................................................................2631.3340400000000
.....................TACAAATTCAGGCGCAAAAGAGAA.......................................................................................................................................2411.0010010000000
..............................................................TTACAGCTTCAATACAGTGGTCCAT.............................................................................................2531.0030300000000
...............................................................TACAGCTTCAATACAGTGGTCC...............................................................................................2290.7870700000000
..............................................................TTACAGCTTCAATACAGTGGTCCATCGC..........................................................................................2830.6720200000000
....................................................................................................................GTGAAAACAAGGTTAATGTGTGCCC.......................................2530.6720200000000
...............................................................TACAGCTTCAATACAGTGGTCCATCGC..........................................................................................2730.6720200000000
.............................................................................................AAGGCGCCTTTCGTGTTGGAGA.................................................................2220.5010010000000
.................................................................................................................................TAATGTGTGCCCTGATCGG................................1920.5010100000000
......................................................................................................................................TGTGCCCTGATCGGAGGGGGATTGG.....................2520.5010100000000
.............................................................................................AAGGCGCCTTTCGTGTTGGAGC.................................................................2220.5010010000000
...........................................................................................................................CAAGGTTAATGTGTGCCCTGATCGGAG..............................2720.5010100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTGA....................................2720.5010100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTG.....................................2620.5010100000000
..........................................................................TACAGTGGTCCATCGCTGAAAGGCGC................................................................................2630.3310100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCC........................................2330.3310100000000
....................................................................................................................GTGAAAACAAGGTTAATGTGTGC.........................................2330.3310100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGC.........................................2230.3310100000000
..............................................................TTACAGCTTCAATACAGTGGTCCATCG...........................................................................................2730.3310100000000
..............................................................TTACAGCTTCAATACAGTG...................................................................................................1990.3330210000000
.............................................................CTTACAGCTTCAATACAGTGGT.................................................................................................2270.1410100000000
................................................GGAAATTGGGTCACTTACAGCT..............................................................................................................2280.1310100000000
..............................................................TTACAGCTTCAATACAGTGGA.................................................................................................2190.1110100000000
..............................................................TTACAGCTTCAATACAGTGGGC................................................................................................2290.1110100000000
..............................................................TTACAGCTTCAATACAGTGGTA................................................................................................2290.1110000100000
...............................................................TACAGCTTCAATACAGTGGTC................................................................................................2190.1110100000000
..............................................................TTACAGCTTCAATACAGTGGTCA...............................................................................................2390.1110100000000
...............................................................TACAGCTTCAATACAGTGGT.................................................................................................2090.1110100000000
..............................................................TTACAGCTTCAATACAGTCGT.................................................................................................2190.1110100000000
droPer2
TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGACCCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCTCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................TACAGTGGTCCATCTCTGAAAGGCGC................................................................................2621.002110000
..................TTTTACAAATTCAGGCGCAAAAGA..........................................................................................................................................2420.501010000
..........................................................................TACAGTGGTCCATCTCTGAAAGGCGCC...............................................................................2720.501100000
....................................................................................................................................TGTGTGCCCTGATCGGAGGGGGAT........................2420.501010000
..........TTTTACAATTTTACAAATTCAGGCGCAAA.............................................................................................................................................2920.501010000
..........................................................................TACAGTGGTCCATCTCTGAAAGGCGCCTT.............................................................................2920.501010000
.............................................................................................................TGGAGCTGTGAAAACAAGGTTAATG..............................................2530.331010000
...............................................GGGAAATTGGGTCACTTACAGCT..............................................................................................................2360.171010000
......................................................TGGGTCACTTACAGCTTCAATACAGTGG..................................................................................................2870.141010000
...............................................................TACAGCTTCAATACAGTGGTC................................................................................................2190.111010000
......................................................TGGGTCACTTACAGCTTCAATACA......................................................................................................24310.031010000
......................................................TGGGTCACTTACAGCTTCAA..........................................................................................................20330.031010000

Generated: 11/04/2014 at 10:03 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dp5 Unknown_group_258:15657-15836 - dps-miR-2514 TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGAACCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCGCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTA
droPer2 scaffold_119:28610-28789 - TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGACCCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCTCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGAACCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCGCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................TTACAGCTTCAATACAGTGGTCC...............................................................................................23911.8910709730601000
..............................................................TTACAGCTTCAATACAGTGGTC................................................................................................2297.897106510401000
..............................................................TTACAGCTTCAATACAGTGGT.................................................................................................2192.672402010200100
..............................................................TTACAGCTTCAATACAGTGG..................................................................................................2092.222002000000000
..............................................................TTACAGCTTCAATACAGTGGTCCA..............................................................................................2432.0060600000000
.............TACAATTTTACAAATTCAGGCGCAAA.............................................................................................................................................2612.0020000000200
..............................................................TTACAGCTTCAATACAGTGGTCCATC............................................................................................2631.3340400000000
.....................TACAAATTCAGGCGCAAAAGAGAA.......................................................................................................................................2411.0010010000000
..............................................................TTACAGCTTCAATACAGTGGTCCAT.............................................................................................2531.0030300000000
...............................................................TACAGCTTCAATACAGTGGTCC...............................................................................................2290.7870700000000
..............................................................TTACAGCTTCAATACAGTGGTCCATCGC..........................................................................................2830.6720200000000
....................................................................................................................GTGAAAACAAGGTTAATGTGTGCCC.......................................2530.6720200000000
...............................................................TACAGCTTCAATACAGTGGTCCATCGC..........................................................................................2730.6720200000000
.............................................................................................AAGGCGCCTTTCGTGTTGGAGA.................................................................2220.5010010000000
.................................................................................................................................TAATGTGTGCCCTGATCGG................................1920.5010100000000
......................................................................................................................................TGTGCCCTGATCGGAGGGGGATTGG.....................2520.5010100000000
.............................................................................................AAGGCGCCTTTCGTGTTGGAGC.................................................................2220.5010010000000
...........................................................................................................................CAAGGTTAATGTGTGCCCTGATCGGAG..............................2720.5010100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTGA....................................2720.5010100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCCCTG.....................................2620.5010100000000
..........................................................................TACAGTGGTCCATCGCTGAAAGGCGC................................................................................2630.3310100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGCC........................................2330.3310100000000
....................................................................................................................GTGAAAACAAGGTTAATGTGTGC.........................................2330.3310100000000
.....................................................................................................................TGAAAACAAGGTTAATGTGTGC.........................................2230.3310100000000
..............................................................TTACAGCTTCAATACAGTGGTCCATCG...........................................................................................2730.3310100000000
..............................................................TTACAGCTTCAATACAGTG...................................................................................................1990.3330210000000
.............................................................CTTACAGCTTCAATACAGTGGT.................................................................................................2270.1410100000000
................................................GGAAATTGGGTCACTTACAGCT..............................................................................................................2280.1310100000000
..............................................................TTACAGCTTCAATACAGTGGA.................................................................................................2190.1110100000000
..............................................................TTACAGCTTCAATACAGTGGGC................................................................................................2290.1110100000000
..............................................................TTACAGCTTCAATACAGTGGTA................................................................................................2290.1110000100000
...............................................................TACAGCTTCAATACAGTGGTC................................................................................................2190.1110100000000
..............................................................TTACAGCTTCAATACAGTGGTCA...............................................................................................2390.1110100000000
...............................................................TACAGCTTCAATACAGTGGT.................................................................................................2090.1110100000000
..............................................................TTACAGCTTCAATACAGTCGT.................................................................................................2190.1110100000000
droPer2
TGCGCATGTCTTTTACAATTTTACAAATTCAGGCGCAAAAGAGACCCGGGAAATTGGGTCACTTACAGCTTCAATACAGTGGTCCATCTCTGAAAGGCGCCTTTCGTGTTGGAGCTGTGAAAACAAGGTTAATGTGTGCCCTGATCGGAGGGGGATTGGTAAATGGGGGGGTGATCTCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................TACAGTGGTCCATCTCTGAAAGGCGC................................................................................2621.002110000
..................TTTTACAAATTCAGGCGCAAAAGA..........................................................................................................................................2420.501010000
..........................................................................TACAGTGGTCCATCTCTGAAAGGCGCC...............................................................................2720.501100000
....................................................................................................................................TGTGTGCCCTGATCGGAGGGGGAT........................2420.501010000
..........TTTTACAATTTTACAAATTCAGGCGCAAA.............................................................................................................................................2920.501010000
..........................................................................TACAGTGGTCCATCTCTGAAAGGCGCCTT.............................................................................2920.501010000
.............................................................................................................TGGAGCTGTGAAAACAAGGTTAATG..............................................2530.331010000
...............................................GGGAAATTGGGTCACTTACAGCT..............................................................................................................2360.171010000
......................................................TGGGTCACTTACAGCTTCAATACAGTGG..................................................................................................2870.141010000
...............................................................TACAGCTTCAATACAGTGGTC................................................................................................2190.111010000
......................................................TGGGTCACTTACAGCTTCAATACA......................................................................................................24310.031010000
......................................................TGGGTCACTTACAGCTTCAA..........................................................................................................20330.031010000

Generated: 11/04/2014 at 10:03 PM