ID:

dps-mir-2507a

 Coordinate:

3:8680507-8680614 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.6 -29.4 -29.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

ACATCGGTAAATTCACAAAAATGTATAAATACATACTTATGAATGTGAAGATTTATAACGACAACAAATTAGTGGGCATGAATTTGTGCCAATATTTTATTTTTTAATTAATGTTGTACATTTTCGTGCCTATAAATTTCAATGTCTCGTCTATAGATAATATCTGCAAAGTGATTTCGCACACTTGTGTTAGAATCAAAAGTGAAAG

*********************************************************..((((..(((((.(((((((((((..(((((.((((((..(((....))).)))))))))))..))))))))))).)))))...))))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 SRR902011

testis

 M059

embryo

 GSM343916

embryo

 SRR902010

ovaries

 M062

head

 V112

male body		 GSM444067

head

 M022

male body		 SRR902012

CNS imaginal disc
...............................................................................................................TGTTGTACATTTTCGTGCCTAT........................................................................... 22 0 1 513.00 513 427 51 15 3 15 2 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCT............................................................................. 20 0 1 170.00 170 126 8 11 15 0 0 2 3 5 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATA.......................................................................... 23 0 1 105.00 105 91 3 3 3 5 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTAT........................................................................... 21 0 1 69.00 69 65 3 1 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTA............................................................................ 21 0 1 54.00 54 33 4 1 8 0 0 5 3 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATAA......................................................................... 24 0 1 34.00 34 25 2 0 5 2 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATT.......................................................................... 23 1 1 34.00 34 18 14 0 0 0 0 0 1 0 1
...............................................................................................................TGTTGTACATTTTCGTGCCTATAAA........................................................................ 25 0 1 23.00 23 22 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATC.......................................................................... 23 1 1 14.00 14 1 8 0 0 0 5 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTAA........................................................................... 22 1 1 14.00 14 13 1 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTATA.......................................................................... 22 0 1 13.00 13 11 1 1 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCG......................................................................... 24 2 1 12.00 12 0 12 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATAAAA....................................................................... 26 1 1 11.00 11 10 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATG.......................................................................... 23 1 1 10.00 10 5 5 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCT............................................................................. 19 0 1 8.00 8 8 0 0 0 0 0 0 0 0 0
.............................................................................................................AATGTTGTACATTTTCGTGCCT............................................................................. 22 0 1 8.00 8 7 0 1 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTC......................................................................... 24 2 1 7.00 7 1 6 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTATT.......................................................................... 22 1 1 6.00 6 5 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCCT........................................................................ 25 3 1 6.00 6 1 5 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTAAA.......................................................................... 23 1 1 6.00 6 4 2 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCCC........................................................................ 25 3 1 6.00 6 0 2 0 0 0 2 2 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTT......................................................................... 24 2 1 6.00 6 2 4 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTA............................................................................ 20 0 1 5.00 5 4 0 0 1 0 0 0 0 0 0
.................................................................................................................TTGTACATTTTCGTGCCTAT........................................................................... 20 0 1 4.00 4 3 0 0 0 1 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCC............................................................................. 20 1 1 4.00 4 0 0 2 0 0 0 0 1 1 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTCC........................................................................ 25 3 1 4.00 4 0 3 0 0 0 0 1 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTCA........................................................................ 25 2 1 4.00 4 0 4 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTAC........................................................................... 22 1 1 4.00 4 0 1 3 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTATAAA........................................................................ 24 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATAAAT....................................................................... 26 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCTC........................................................................ 25 3 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCC......................................................................... 24 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTG......................................................................... 24 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCT......................................................................... 24 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0
..................................................................................................................TGTACATTTTCGTGCCTAT........................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATAAAAA...................................................................... 27 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................CTGTTGTACATTTTCGTGCCTAT........................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTCT........................................................................ 25 3 1 3.00 3 0 2 0 0 0 0 1 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTATAA......................................................................... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTGTACATTTTCGTGCCTAT........................................................................... 22 1 1 3.00 3 0 0 2 0 0 1 0 0 0 0
.................................................................................................................TTGTACATTTTCGTGCCTATT.......................................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTTT........................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................TTTTGTACATTTTCGTGCCTAT........................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................TGTACATTTTCGTGCCTA............................................................................ 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTACTA......................................................................... 24 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCC.............................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTGT........................................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0
..............................................................................................................CTGTTGTACATTTTCGTGCCTATT.......................................................................... 24 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTATC.......................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..............................................................................................................ATGTTGTACATTTTCGTGCCTATCG......................................................................... 25 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................................TTGTACATTTTCGTGCCTATA.......................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATAAAAAA..................................................................... 28 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTACT.......................................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..............................................................................................................TTGTTGTACATTTTCGTGCCTAT........................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................TTCTGTACATTTTCGTGCCT............................................................................. 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................TAAATAATGTTGTACATTTTCGTGCC.............................................................................. 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
........................................................................TGGGCATGAATTTGTGCCAATATT................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCA.............................................................................. 19 1 2 1.00 2 1 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCAA............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTGGTACATTTTCGTGCCTA............................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTT............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTTCCT............................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTGTACACTTTCGTGCCT............................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGTACATTTTCGTGCCTA............................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTAAG.......................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................TAATGTTGTACATTTTCGTGCCT............................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGTTGTACATTTTTGTGCC.............................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TTGTACATTTTCGTGCCTATAA......................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACCTTTTCGTGCCT............................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTTA........................................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTAC........................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTAAAA......................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CTGTTGTACATTTTCGTGCCT............................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCAAT........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................ATGTACATTTTCGTGCCTATAACA....................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................AATGTTGTACATTTTCGTGCCTAT........................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTATCCC........................................................................ 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTAAA.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGGACATTTTCGTGCCTATC.......................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTTT........................................................................ 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTG............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGTTGTACATTTTCGTGCC.............................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTAACTA........................................................................ 25 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTGCCTATCC......................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCTTGCCTATTCA........................................................................ 25 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
................................................................................................................CTTGTACATTTTCGTGCCTAT........................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTGTCGTGCCT............................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCCCT....................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TTTTGTACATTTTCGTGCCT............................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................ATGTTGTACATTTTCGTGCCT............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATCGTTT...................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATAG......................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................GTTGTACATTTTCGTTCCTATT.......................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATAAG........................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................GTACATTTTCGTGCCTATA.......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TCTTGTACATTTTCGTGCCTAT........................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTAAAAA........................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TTTTGTACATTTTCGTGCCTAC........................................................................... 22 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................TTTTGTACATTTTCGTGCCTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................................GGGCATGAATTTGTGCCAAT................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCTTGCCTAT........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTCTACATTTTCGTGCCT............................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCA............................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTCCC.............................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................CTGTTGTACATTTTCGTGCCTAAA.......................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTACCA......................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GTGTTGTACATTTTCGTGCCTATAAA........................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TTTTGTACATTTTCGTGCCTATA.......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................TGTTATACATTTTCGTGCCTAT........................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGCTGTACATTTTCGTGCCT............................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................CCTGTTGTACATTTTCGTGCCTAT........................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTACA.......................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................AATGTTGTACATTTTCGTGCC.............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTCTACATTTTCGTGCCTAT........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGCTGTACATTTTCGTGCCTATC.......................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................CGTTGTACATTTTCGTGCCTAT........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTATTA......................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................CGTTGTACATTTTCGTGCCT............................................................................. 20 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................AATTAGTGTTGTACTTTTTC................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................................AGAATGTTGTACATTTTCGTGCCC............................................................................. 24 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................TAATTAGTGTTGTACGTTTTC................................................................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
......................................................ATAACGACAACAAATTTGT....................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................TGTGAAGATTTAGAACGC................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTTCG.......................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTGTCTTGCCT............................................................................. 20 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTGTACATTTTCGTGCCTTTTT......................................................................... 24 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
ACATCGGGAAACTCACAAA............................................................................................................................................................................................. 19 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................ATGTTGGAAATTTTCGTCCCT............................................................................. 21 3 10 0.10 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTATACATTTTCATACCTA............................................................................ 21 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................CGTTGTACATTTTCGTGAA.............................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTAGCCATTTAAGTGTTTTTACATATTTATGTATGAATACTTACACTTCTAAATATTGCTGTTGTTTAATCACCCGTACTTAAACACGGTTATAAAATAAAAAATTAATTACAACATGTAAAAGCACGGATATTTAAAGTTACAGAGCAGATATCTATTATAGACGTTTCACTAAAGCGTGTGAACACAATCTTAGTTTTCACTTTC

************************************************************..((((..(((((.(((((((((((..(((((.((((((..(((....))).)))))))))))..))))))))))).)))))...))))..********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 V112

male body		 SRR902010

ovaries
..................................................................................................................................................AGCTGATATCTATTCTAG............................................ 18 2 5 0.20 1 1 0 0
.........................................................................................................................................AAGTTACGGAACAGATGTCTA.................................................. 21 3 5 0.20 1 0 1 0
........................................................................................................................................AAAGTTACAGAGGGGATA...................................................... 18 2 10 0.10 1 0 0 1
.GTAGTGATTTAAGTGTTT............................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 3:8680457-8680664 + dps-mir-2507a Known_mirbase ACATCGGTAAATTCACAAAAATGTATAAATACATAC----TTATGAATGTGAAGATTTATAACGACAACAAATTAGTGGGCATGAATTTGTGCCAATATTTTA--TTTTTTAATTAATGTTGTACATTTTCGTGCCTATAAATTT-CAATGTCTCGTCTATAGATAATATCTGCAAAGTGATTTCGCACACTTGTGTTAGAATCAAAAGTGAAAG
droPer2 scaffold_4:2567235-2567447 + dpe_211 candidate-rescued ACATCGGTAAATTCACAAAAATGTATAAATACATATGTACATATGAATGTGAAGATTTATAACGACAACAAATTTGTGGGCATGAATTTGT-CCAATATTATACTTTTTTAAATTAATGTTGTACATTTTTGTGCCTATAAATTT-CAATGTGTCGTCTATAGATAATATCTGCAAAGTGATTTCGCACACTTGTGTTAGAATCAAAAGTGAAAG
droBip1 scf7180000396427:2575669-2575761 + ATT-------------------------------------------------------------------------------------TGTGACAATATGATA-----TTTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCA-TTCGTCA-------------------------------TCTGTGAGTCTGTGAAAAGTGCGCG
droEle1 scf7180000491201:735866-735969 - TTTGCAATGTA--CACAAACA---------------------------------------------------TTTGCAGGCGGGGTGGTGCGTCAATATATTT--TGTTTTTATCTATATTGCACACTTCCCGGCCTATAAATGCACAGTGTTTCGACT--------------------------------------------------------
droEug1 scf7180000409474:1490452-1490488 + ACATCTGTGAAATCATAAAATTATATAATTTCATAT----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:10616409-10616533 - der-mir-310a Known_mirbase AGTCTTGCAAATACACAAATATTTGC---------------------------------------------------AGGACGGGTCGTGTGTCAATGTATTG--ATCTCTTAGCTATATTGCACACTTCCCGCCCTTTAAATGTCCAGTGTTTCAACTTG----AATATCTGTGAAATCAT---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
ACATCGGTAAATTCACAAAAATGTATAAATACATAC----TTATGAATGTGAAGATTTATAACGACAACAAATTAGTGGGCATGAATTTGTGCCAATATTTTA--TTTTTTAATTAATGTTGTACATTTTCGTGCCTATAAATTT-CAATGTCTCGTCTATAGATAATATCTGCAAAGTGATTTCGCACACTTGTGTTAGAATCAAAAGTGAAAGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................................TGTTGTACATTTTCGTGCCTAT............................................................................221513.00513042715230015510
.....................................................................................................................TGTTGTACATTTTCGTGCCT..............................................................................201170.0017051261101532080
.....................................................................................................................TGTTGTACATTTTCGTGCCTATA...........................................................................231105.0010509130300530
......................................................................................................................GTTGTACATTTTCGTGCCTAT............................................................................21169.006906510000030
.....................................................................................................................TGTTGTACATTTTCGTGCCTA.............................................................................21154.005403310835040
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAA..........................................................................24134.003402500500220
.....................................................................................................................TGTTGTACATTTTCGTGCCTATT...........................................................................23134.0034018000100141
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAAA.........................................................................25123.002302200100000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATC...........................................................................23114.00140105000080
.....................................................................................................................TGTTGTACATTTTCGTGCCTAA............................................................................22114.001401300000010
......................................................................................................................GTTGTACATTTTCGTGCCTATA...........................................................................22113.001301110000010
.....................................................................................................................TGTTGTACATTTTCGTGCCTATCG..........................................................................24112.001200000000120
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAAAA........................................................................26111.001101000000010
.....................................................................................................................TGTTGTACATTTTCGTGCCTATG...........................................................................23110.00100500000050
......................................................................................................................GTTGTACATTTTCGTGCCT..............................................................................1918.0080800000000
...................................................................................................................AATGTTGTACATTTTCGTGCCT..............................................................................2218.0080710000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATTC..........................................................................2417.0070100000060
......................................................................................................................GTTGTACATTTTCGTGCCTATT...........................................................................2216.0060500000010
.....................................................................................................................TGTTGTACATTTTCGTGCCTATCCT.........................................................................2516.0060100000050
.....................................................................................................................TGTTGTACATTTTCGTGCCTATCCC.........................................................................2516.0060002002020
.....................................................................................................................TGTTGTACATTTTCGTGCCTATTT..........................................................................2416.0060200000040
......................................................................................................................GTTGTACATTTTCGTGCCTA.............................................................................2015.0050400100000
.......................................................................................................................TTGTACATTTTCGTGCCTAT............................................................................2014.0040300000100
.....................................................................................................................TGTTGTACATTTTCGTGCCC..............................................................................2014.0041020010000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATTCC.........................................................................2514.0040000001030
.....................................................................................................................TGTTGTACATTTTCGTGCCTAC............................................................................2214.0040030000010
......................................................................................................................GTTGTACATTTTCGTGCCTATAAA.........................................................................2414.0040300000010
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAAAT........................................................................2613.0030000000030
.....................................................................................................................TGTTGTACATTTTCGTGCCTATCTC.........................................................................2513.0030100000020
.....................................................................................................................TGTTGTACATTTTCGTGCCTATCC..........................................................................2413.0030000000030
.....................................................................................................................TGTTGTACATTTTCGTGCCTATTG..........................................................................2413.0030000000030
.....................................................................................................................TGTTGTACATTTTCGTGCCTATCT..........................................................................2413.0030000000030
........................................................................................................................TGTACATTTTCGTGCCTAT............................................................................1913.0030300000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAAAAA.......................................................................2713.0030300000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATTCT.........................................................................2513.0030000001020
......................................................................................................................GTTGTACATTTTCGTGCCTATAA..........................................................................2313.0030300000000
.......................................................................................................................TTGTACATTTTCGTGCCTATT...........................................................................2112.0020100000010
........................................................................................................................TGTACATTTTCGTGCCTA.............................................................................1812.0020000000200
.....................................................................................................................TGTTGTACATTTTCGTGCC...............................................................................1912.0020200000000
......................................................................................................................GTTGTACATTTTCGTGCCTATC...........................................................................2212.0020100000010
....................................................................................................................ATGTTGTACATTTTCGTGCCTATCG..........................................................................2512.0020000000020
.......................................................................................................................TTGTACATTTTCGTGCCTATA...........................................................................2112.0020200000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAAAAAA-.....................................................................2812.0020200000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTACT...........................................................................2312.0020000000020
............................................................................TGGGCATGAATTTGTGCCAATATT...................................................................................................................2411.0010000000010
.....................................................................................................................TGTTGTACATTTTCGTGCA...............................................................................1921.0020100100000
.....................................................................................................................TGTTGTACATTTTCGTGCCTT.............................................................................2111.0010100000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTAAG...........................................................................2311.0010100000000
..................................................................................................................TAATGTTGTACATTTTCGTGCCT..............................................................................2311.0010100000000
.......................................................................................................................TTGTACATTTTCGTGCCTATAA..........................................................................2211.0010100000000
......................................................................................................................GTTGTACATTTTCGTGCCTAC............................................................................2111.0010010000000
...................................................................................................................AATGTTGTACATTTTCGTGCCTAT............................................................................2411.0010100000000
......................................................................................................................GTTGTACATTTTCGTGCCTATCCC.........................................................................2411.0010001000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATTTT.........................................................................2511.0010000000010
.....................................................................................................................TGTTGTACATTTTCGTGCCTG.............................................................................2111.0010100000000
....................................................................................................................ATGTTGTACATTTTCGTGCC...............................................................................2011.0010100000000
......................................................................................................................GTTGTACATTTTCGTGCCTATCC..........................................................................2311.0010100000000
....................................................................................................................ATGTTGTACATTTTCGTGCCT..............................................................................2111.0010100000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAG..........................................................................2411.0010100000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTATAAG.........................................................................2511.0010100000000
.........................................................................................................................GTACATTTTCGTGCCTATA...........................................................................1911.0010100000000
.............................................................................GGGCATGAATTTGTGCCAAT......................................................................................................................2011.0010100000000
.....................................................................................................................TGTTGTACATTTTCGTGCCA..............................................................................2011.0010100000000
...................................................................................................................AATGTTGTACATTTTCGTGCC...............................................................................2111.0010100000000
.....................................................................................................................TGTTGTACATTTTCGTGCCTTCG...........................................................................2320.5010000000010
droPer2
ACATCGGTAAATTCACAAAAATGTATAAATACATATGTACATATGAATGTGAAGATTTATAACGACAACAAATTTGTGGGCATGAATTTGT-CCAATATTATACTTTTTTAAATTAATGTTGTACATTTTTGTGCCTATAAATTT-CAATGTGTCGTCTATAGATAATATCTGCAAAGTGATTTCGCACACTTGTGTTAGAATCAAAAGTGAAAGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................................ATGTTGTACATTTTTGTGCCT..............................................................................21184.0084155015103
.....................................................................................................................TGTTGTACATTTTTGTGCCT..............................................................................20164.006474011006
....................................................................................................................ATGTTGTACATTTTTGTGCC...............................................................................20123.00232210000
.....................................................................................................................TGTTGTACATTTTTGTGCCTATA...........................................................................23122.00220211000
.....................................................................................................................TGTTGTACATTTTTGTGCCTAT............................................................................22115.00150132000
.....................................................................................................................TGTTGTACATTTTTGTGCCTA.............................................................................21113.00130103000
...................................................................................................................AATGTTGTACATTTTTGTGCCT..............................................................................2216.006132000
......................................................................................................................GTTGTACATTTTTGTGCCT..............................................................................1914.004040000
....................................................................................................................ATGTTGTACATTTTTGTGCCTA.............................................................................2214.004012001
....................................................................................................................ATGTTGTACATTTTTGTGC................................................................................1914.004030001
.....................................................................................................................TGTTGTACATTTTTGTGCCTATAAAA........................................................................2612.002020000
....................................................................................................................ATGTTGTACATTTTTGTGCCC..............................................................................2112.002020000
.....................................................................................................................TGTTGTACATTTTTGTGCC...............................................................................1912.002010001
......................................................................................................................GTTGTACATTTTTGTGCCTAT............................................................................2111.001010000
....................................................................................................................ATGTTGTACATTTTTGTGCCTTC............................................................................2311.001010000
.....................................................................................................................TGTTGTACATTTTTGTGCCTATAAA.........................................................................2511.001010000
....................................................................................................................ATGTTGTACATTTTTGTGCCTT.............................................................................2211.001000001
....................................................................................................................ATGTTGTACATTTTTGTGT................................................................................1921.002000002
......................................................................................................................GTTGTACATTTTTGTGCCTATCTT.........................................................................2411.001010000
.....................................................................................................................TGTTGTACATTTTTGTGCCTATAA..........................................................................2411.001010000
.......................................................................................................................TTGTACATTTTTGTGCCTATA...........................................................................2111.001010000
.....................................................................................................................TGTTGTACATTTTTGTGCCTAA............................................................................2211.001001000
......................................................................................................................GTTGTACATTTTTGTGCCTATA...........................................................................2211.001001000
....................................................................................................................ATGTTGTACATTTTTGTGCCTAA............................................................................2311.001010000
droBip1
ATT-------------------------------------------------------------------------------------TGTGACAATATGATA-----TTTCAATCATATTGCACTTGTACCGGCCTGATAATATCTGGCA-TTCGTCA-------------------------------TCTGTGAGTCTGTGAAAAGTGCGCGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTGCAATGTA--CACAAACA---------------------------------------------------TTTGCAGGCGGGGTGGTGCGTCAATATATTT--TGTTTTTATCTATATTGCACACTTCCCGGCCTATAAATGCACAGTGTTTCGACT--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
ACATCTGTGAAATCATAAAATTATATAATTTCATAT----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEre2
AGTCTTGCAAATACACAAATATTTGC---------------------------------------------------AGGACGGGTCGTGTGTCAATGTATTG--ATCTCTTAGCTATATTGCACACTTCCCGCCCTTTAAATGTCCAGTGTTTCAACTTG----AATATCTGTGAAATCAT---------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................TATTGCACACTTCCCGCCCTTT............................................................................22113097.0013097108042134113116110
.....................................................................................................................TATTGCACACTTCCCGCCCTT.............................................................................2111101.001101945117025950
......................................................................................................................ATTGCACACTTCCCGCCCTTT............................................................................211901.009018732701000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAA..........................................................................241334.003343102202000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTA...........................................................................231325.003252793808000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAAA.........................................................................251197.00197195200000
.....................................................................................................................TATTGCACACTTCCCGCCCTTC............................................................................221150.00150514500000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTT...........................................................................23172.007260821010
.....................................................................................................................TATTGCACACTTCCCGCCCT..............................................................................20170.0070531300130
......................................................................................................................ATTGCACACTTCCCGCCCTT.............................................................................20169.006969000000
.......................................................................................................................TTGCACACTTCCCGCCCTTT............................................................................20168.006863500000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAAAA........................................................................26153.005352000001
.............................................................................AGGACGGGTCGTGTGTCAATGTA...................................................................................................................23150.005040000505
.....................................................................................................................TATTGCACACTTCCCGCCCTTTG...........................................................................23126.002626000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAAAAA.......................................................................27126.002626000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTA...........................................................................22125.002525000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTAA..........................................................................23125.002525000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTA............................................................................22123.002320300000
......................................................................................................................ATTGCACACTTCCCGCCCTTTAAA.........................................................................24122.002222000000
.............................................................................AGGACGGGTCGTGTGTCAATGT....................................................................................................................22117.001711110310
....................................................................................................................ATATTGCACACTTCCCGCCCTTT............................................................................23116.001615100000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTC...........................................................................23113.001310102000
.............................................................................AGGACGGGTCGTGTGTCAATG.....................................................................................................................21111.001110000100
........................................................................................................................TGCACACTTCCCGCCCTTT............................................................................1919.0098100000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAAAAAA......................................................................2818.0088000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTT...........................................................................2217.0077000000
.....................................................................................................................TATTGCACACTTCCCGCCCTG.............................................................................2117.0077000000
.....................................................................................................................TATTGCACACTTCCCGCCCTA.............................................................................2117.0077000000
.....................................................................................................................TATTGCACACTTCCCGCCC...............................................................................1917.0074300000
......................................................................................................................ATTGCACACTTCCCGCCCTTTAAAA........................................................................2517.0077000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTGG..........................................................................2415.0055000000
.....................................................................................................................TATTGCACACTTCCCGCCCTC.............................................................................2115.0050500000
......................................................................................................................ATTGCACACTTCCCGCCCTTA............................................................................2114.0044000000
..............................................................................GGACGGGTCGTGTGTCAATGTA...................................................................................................................2214.0044000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTG............................................................................2214.0044000000
......................................................................................................................ATTGCACACTTCCCGCCCTTC............................................................................2114.0040400000
.............................................................................AGGACGGGTCGTGTGTCAATGTATTG--AT............................................................................................................2814.0040000004
......................................................................................................................ATTGCACACTTCCCGCCCTTG............................................................................2114.0044000000
.....................................................................................................................TATTGCACACTTCCCGCC................................................................................1814.0044000000
......................................................................................................................ATTGCACACTTCCCGCCCT..............................................................................1913.0033000000
..............................................................................GGACGGGTCGTGTGTCAATGT....................................................................................................................2113.0033000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTG...........................................................................2213.0033000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAG..........................................................................2413.0033000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAAC.........................................................................2513.0033000000
.......................................................................................................................TTGCACACTTCCCGCCCTTTAA..........................................................................2213.0033000000
.......................................................................................................................TTGCACACTTCCCGCCCTT.............................................................................1913.0033000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAT..........................................................................2413.0032100000
..............................................................................GGACGGGTCGTGTGTCAATG.....................................................................................................................2012.0022000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTAAAAA.......................................................................2612.0022000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTGG..........................................................................2312.0022000000
.........................................................................................................................GCACACTTCCCGCCCTTT............................................................................1812.0022000000
....................................................................................................................ATATTGCACACTTCCCGCCCTTTA...........................................................................2412.0022000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAC..........................................................................2412.0022000000
....................................................................................................................ATATTGCACACTTCCCGCCCTTTAAA.........................................................................2611.0011000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTGGC.........................................................................2411.0011000000
.............................................................................AGGACGGGTCGTGTGTCAATTA....................................................................................................................2211.0011000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAAAAT.......................................................................2711.0011000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTAAAAC.......................................................................2711.0011000000
.....................................................................................................................TATTGCACACTTCCCGCCCTTTTC..........................................................................2411.0011000000
......................................................................................................................ATTGCACACTTCCCGCCCTTTAAAAAA......................................................................2711.0011000000
.............................................................................AGGACGGGTCGTGTGTCAATGA....................................................................................................................2211.0010001000
.....................................................................................................................TATTGCACACTTCCCGCCCTTGG...........................................................................2311.0011000000
.....................................................................................................................TATTGCACACTTCCCGCCCAC.............................................................................2111.0010100000
.........................................................................................................................GCACACTTCCCGCCCTTTAAAA........................................................................2211.0011000000
........................................................................................................................TGCACACTTCCCGCCCTTTAA..........................................................................2111.0011000000
........................GC---------------------------------------------------AGGACGGGTCGTGTGTCAATGT....................................................................................................................2411.0011000000

Generated: 10/20/2015 at 10:16 PM