ID:

dps-mir-13a

 Coordinate:

2:9824939-9825012 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.7 -29.7 -29.6

Flybase annnotation

pre_miRNA [Dpse\mir-13a-RM]; utr3 [utr3_minus_7789]; miRNA [Dpse\miR-13a-RA]

No Repeatable elements found

Sense Strand Reads

GTTCGGCTCGTACTTTTTGGACAAAAAAAAAAAACCGTCAGCCCCATACTTACGTAACCCATCAAACGGTTGTGAAATGTTGCATTTATCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGAATGGCCAGCAATCCATCATCGATCGGGGCAGGGCAGGATGGAGCAC

******************************************.((((.((((((.(((.(((((((.((((((((.(((...............))).))))))))..))))))).))).)))).)).))))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total M059

embryo

 M062

head

 GSM343916

embryo

 GSM444067

head

 M040

female body

 V112

male body		 SRR902012

CNS imaginal disc

 SRR902011

testis

 SRR902010

ovaries
................................................................................................TATCACAGCCATTTTGATGAGTT....................................................... 23 0 1 56311.00 56311 29783 9000 8997 6423 1841 191 75 0 1
................................................................................................TATCACAGCCATTTTGATGAGT........................................................ 22 0 1 15200.00 15200 2925 7674 1277 2500 734 73 16 0 1
................................................................................................TATCACAGCCATTTTGATGAGTC....................................................... 23 1 1 3063.00 3063 2672 379 6 3 2 1 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGTT....................................................... 23 1 1 1584.00 1584 1215 352 11 4 1 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGC........................................................ 22 1 1 1455.00 1455 479 966 2 8 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 1293.00 1293 964 293 10 19 7 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTT....................................................... 23 1 1 1100.00 1100 803 265 14 18 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAG......................................................... 21 0 1 1058.00 1058 90 549 49 271 91 5 2 1 0
................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................... 24 0 1 1054.00 1054 408 412 39 148 38 7 2 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 451.00 451 251 169 21 7 3 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGT........................................................ 22 1 1 416.00 416 100 314 1 1 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGT........................................................ 22 1 1 390.00 390 100 275 1 10 4 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGTT....................................................... 22 0 1 368.00 368 127 95 2 2 142 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGTT....................................................... 23 1 1 354.00 354 250 64 34 6 0 0 0 0 0
.........................................................CCCATCAAACGGTTGTGAAATG............................................................................................... 22 0 1 333.00 333 49 3 217 10 45 0 9 0 0
................................................................................................TTTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 310.00 310 219 89 2 0 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGT........................................................ 22 1 1 289.00 289 87 196 0 5 0 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGCT....................................................... 23 1 1 229.00 229 92 28 73 36 0 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGT........................................................ 23 1 1 194.00 194 25 163 1 0 5 0 0 0 0
....................................................................................................ACAGCCATTTTGATGAGTT....................................................... 19 0 1 187.00 187 7 5 91 83 1 0 0 0 0
................................................................................................TATCACAGACATTTTGATGAGTT....................................................... 23 1 1 165.00 165 55 25 75 10 0 0 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 162.00 162 117 29 8 8 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGA.......................................................... 20 0 1 160.00 160 5 119 1 8 27 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGT........................................................ 21 0 1 160.00 160 7 94 1 2 56 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGTGTT....................................................... 23 1 1 154.00 154 89 22 31 12 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGTC....................................................... 23 2 1 151.00 151 124 27 0 0 0 0 0 0 0
................................................................................................TATCACGGCCATTTTGATGAGTT....................................................... 23 1 1 145.00 145 22 52 11 54 4 2 0 0 0
................................................................................................TATCACAGCCATTTTGATGGGTT....................................................... 23 1 1 134.00 134 20 62 17 20 14 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................... 24 1 1 133.00 133 78 44 4 6 1 0 0 0 0
................................................................................................CATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 132.00 132 82 30 9 10 1 0 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAGCT....................................................... 23 3 1 124.00 124 33 6 15 6 7 57 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................... 24 1 1 119.00 119 63 28 6 9 8 3 2 0 0
................................................................................................AATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 116.00 116 87 18 5 6 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGATTT....................................................... 23 1 1 115.00 115 76 23 7 9 0 0 0 0 0
................................................................................................TTTCACAGCCATTTTGATGAGT........................................................ 22 1 1 114.00 114 38 76 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGCTGAGTT....................................................... 23 1 1 114.00 114 2 0 48 64 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTC....................................................... 23 2 1 107.00 107 87 20 0 0 0 0 0 0 0
................................................................................................TATCACAGCCGTTTTGATGAGTT....................................................... 23 1 1 96.00 96 8 13 11 54 6 4 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGT........................................................ 22 1 1 92.00 92 19 67 4 2 0 0 0 0 0
..................................................................................................TCACAGCCATTTTGATGAGTT....................................................... 21 0 1 80.00 80 31 20 17 2 8 0 2 0 0
................................................................................................TATCACAGCCATTTTGATTAGTT....................................................... 23 1 1 78.00 78 38 12 19 9 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGCGTT....................................................... 23 1 1 77.00 77 2 0 40 35 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGGTGAGTT....................................................... 23 1 1 74.00 74 21 5 31 16 0 1 0 0 0
................................................................................................TATCTCAGCCATTTTGATGAGTT....................................................... 23 1 1 74.00 74 56 10 5 2 1 0 0 0 0
...............................................................................................CGATCACAGCCATTTTGATGAGTT....................................................... 24 2 1 73.00 73 47 26 0 0 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTC....................................................... 23 2 1 70.00 70 61 9 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGGT....................................................... 23 1 1 65.00 65 9 0 49 7 0 0 0 0 0
................................................................................................TATCACAGCCACTTTGATGAGTT....................................................... 23 1 1 61.00 61 33 7 11 9 1 0 0 0 0
................................................................................................TATCACAGCCATTTTGATAAGTT....................................................... 23 1 1 59.00 59 18 4 23 13 0 1 0 0 0
................................................................................................TATCACAGCCATTTTTATGAGTT....................................................... 23 1 1 57.00 57 27 9 14 7 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGC........................................................ 22 2 1 57.00 57 21 36 0 0 0 0 0 0 0
................................................................................................TATCACGGCCATTTTGATGAGT........................................................ 22 1 1 54.00 54 4 14 0 25 8 3 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGC........................................................ 22 2 1 53.00 53 17 36 0 0 0 0 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAGC........................................................ 22 3 1 51.00 51 26 12 2 1 6 2 0 0 2
................................................................................................TATCACAGCCATTTTGATG........................................................... 19 0 1 51.00 51 3 29 2 4 13 0 0 0 0
................................................................................................TATCATAGCCATTTTGATGAGTT....................................................... 23 1 1 51.00 51 21 11 13 5 1 0 0 0 0
................................................................................................TATCAGAGCCATTTTGATGAGTT....................................................... 23 1 1 50.00 50 36 11 3 0 0 0 0 0 0
................................................................................................TGTTACAGCCATTTTGATGAGTT....................................................... 23 2 1 49.00 49 36 13 0 0 0 0 0 0 0
................................................................................................CATCACAGCCATTTTGATGAGT........................................................ 22 1 1 46.00 46 8 34 1 2 1 0 0 0 0
....................................................................................................ACAGCCATTTTGATGAGT........................................................ 18 0 1 46.00 46 2 0 13 31 0 0 0 0 0
................................................................................................TATCACAGCTATTTTGATGAGTT....................................................... 23 1 1 46.00 46 24 4 12 5 1 0 0 0 0
................................................................................................TATCGCAGCCATTTTGATGAGTT....................................................... 23 1 1 43.00 43 16 4 8 12 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTG....................................................... 23 1 1 40.00 40 28 6 5 1 0 0 0 0 0
................................................................................................TAGCACAGCCATTTTGATGAGTT....................................................... 23 1 1 40.00 40 2 1 12 25 0 0 0 0 0
................................................................................................TATCACAGTCATTTTGATGAGTT....................................................... 23 1 1 40.00 40 8 6 21 5 0 0 0 0 0
.................................................................................................AGCACAGCCATTTTGATGAGTT....................................................... 22 1 1 39.00 39 22 16 1 0 0 0 0 0 0
................................................................................................TATCACAGACATTTTGATGAGT........................................................ 22 1 1 38.00 38 4 16 12 6 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGAT....................................................... 23 1 1 38.00 38 22 6 6 4 0 0 0 0 0
................................................................................................TATCACACCCATTTTGATGAGTT....................................................... 23 1 1 36.00 36 18 8 5 5 0 0 0 0 0
................................................................................................TATCACAGCCATTTCGATGAGTT....................................................... 23 1 1 35.00 35 14 4 7 9 1 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGTGT........................................................ 22 1 1 35.00 35 11 15 7 2 0 0 0 0 0
................................................................................................TATAACAGCCATTTTGATGAGTT....................................................... 23 1 1 34.00 34 4 0 22 8 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGTT....................................................... 23 1 1 34.00 34 0 0 21 13 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGA........................................................ 22 1 1 34.00 34 5 18 0 7 4 0 0 0 0
...................................................................................................CACAGCCATTTTGATGAGTT....................................................... 20 0 1 34.00 34 11 14 1 6 2 0 0 0 0
................................................................................................TATCACAGCCGTTTTGATGAGT........................................................ 22 1 1 33.00 33 0 5 3 20 4 1 0 0 0
................................................................................................TATCACAGCCATTTTGATGGGT........................................................ 22 1 1 33.00 33 1 17 4 4 7 0 0 0 0
................................................................................................TATCACAGCCATTTTGTTGAGTT....................................................... 23 1 1 33.00 33 3 0 20 10 0 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGTC....................................................... 24 2 1 32.00 32 23 9 0 0 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGTTT...................................................... 24 1 1 32.00 32 18 14 0 0 0 0 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGT........................................................ 22 1 1 32.00 32 11 20 0 1 0 0 0 0 0
................................................................................................TATCACAGCCATTTTAATGAGTT....................................................... 23 1 1 32.00 32 18 3 5 6 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGC........................................................ 22 2 1 31.00 31 11 20 0 0 0 0 0 0 0
................................................................................................TAACACAGCCATTTTGATGAGTT....................................................... 23 1 1 31.00 31 6 1 8 16 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGAAGAGT........................................................ 22 1 3 30.33 91 3 3 57 22 3 3 0 0 0
................................................................................................TATCACAGCCATTTTGATGATT........................................................ 22 1 1 30.00 30 10 14 2 4 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 28.00 28 8 19 0 1 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAG......................................................... 21 1 1 27.00 27 2 24 0 1 0 0 0 0 0
................................................................................................TACTACAGCCATTTTGATGAGTT....................................................... 23 2 1 27.00 27 25 2 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTTATGAGT........................................................ 22 1 1 27.00 27 2 11 7 7 0 0 0 0 0
................................................................................................TATCACAGCCATTCTGATGAGTT....................................................... 23 1 1 27.00 27 9 6 5 7 0 0 0 0 0
...............................................................................................CGATCACAGCCATTTTGATGAGT........................................................ 23 2 1 26.00 26 3 23 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAC......................................................... 21 1 1 25.00 25 7 18 0 0 0 0 0 0 0
................................................................................................TATCACATCCATTTTGATGAGTT....................................................... 23 1 1 25.00 25 5 1 11 8 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 25.00 25 10 15 0 0 0 0 0 0 0
................................................................................................AATCACAGCCATTTTGATGAGT........................................................ 22 1 1 25.00 25 7 17 1 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTA....................................................... 23 1 1 24.00 24 10 6 5 3 0 0 0 0 0
................................................................................................TATCAAAGCCATTTTGATGAGTT....................................................... 23 1 1 23.00 23 0 1 15 7 0 0 0 0 0
..................................................................................................TCACAGCCATTTTGATGAGT........................................................ 20 0 1 23.00 23 1 16 1 1 3 0 1 0 0
................................................................................................TATCACAACCATTTTGATGAGTT....................................................... 23 1 1 23.00 23 15 1 6 1 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAG......................................................... 21 1 1 23.00 23 1 22 0 0 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGTC....................................................... 23 2 1 23.00 23 20 2 1 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGCTGAGT........................................................ 22 1 1 22.00 22 0 0 9 13 0 0 0 0 0
..............................................................................................TCTATCACAGCCATTTTGATGAGTT....................................................... 25 2 1 20.00 20 12 7 0 1 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATTAGT........................................................ 22 1 1 20.00 20 0 8 5 5 0 2 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGC........................................................ 23 2 1 20.00 20 3 17 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATCTTGATGAGTT....................................................... 23 1 1 20.00 20 5 2 9 3 0 1 0 0 0
................................................................................................TATCACAGCCAGCTTGAGGAG......................................................... 21 3 6 19.00 114 0 13 5 8 24 63 0 1 0
................................................................................................TATCTCAGCCATTTTGATGAGT........................................................ 22 1 1 19.00 19 7 12 0 0 0 0 0 0 0
................................................................................................TATCACAGCCGTTTTGATGGGTT....................................................... 23 2 1 19.00 19 0 9 0 7 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGAAGAGTT....................................................... 23 1 3 19.00 57 13 1 27 8 8 0 0 0 0
................................................................................................TATCGCAGCCATTTTGATGAGT........................................................ 22 1 1 18.00 18 1 9 3 5 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAATT....................................................... 23 1 1 18.00 18 5 1 7 5 0 0 0 0 0
................................................................................................TTTCACAGCCATTTTGATGAGTC....................................................... 23 2 1 18.00 18 15 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCAATTTTGATGAGTT....................................................... 23 1 1 18.00 18 1 0 11 6 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATCAGTT....................................................... 23 1 1 17.00 17 4 1 6 6 0 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGTC....................................................... 22 1 1 17.00 17 13 4 0 0 0 0 0 0 0
................................................................................................TCTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 16.00 16 5 1 7 3 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGAC....................................................... 23 2 1 16.00 16 14 2 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGGTGAGT........................................................ 22 1 1 16.00 16 1 4 8 3 0 0 0 0 0
................................................................................................TATCACAGCCACTTTGATGAGT........................................................ 22 1 1 16.00 16 3 5 3 2 3 0 0 0 0
.........................................................CCCATCAAACGGTTGTGAAA................................................................................................. 20 0 1 15.00 15 5 1 1 6 2 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGGT....................................................... 23 2 1 15.00 15 0 0 13 2 0 0 0 0 0
..............................................................................................TCTATCACAGCCATTTTGATGAGT........................................................ 24 2 1 15.00 15 2 13 0 0 0 0 0 0 0
................................................................................................TATCACTGCCATTTTGATGAGTT....................................................... 23 1 1 15.00 15 6 5 3 1 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGCGT........................................................ 22 1 1 15.00 15 0 0 4 11 0 0 0 0 0
.................................................................................................AGCACAGCCATTTTGATGAGT........................................................ 21 1 1 14.00 14 3 11 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATGTTGATGAGTT....................................................... 23 1 1 14.00 14 0 0 9 4 1 0 0 0 0
................................................................................................TGTTACAGCCATTTTGATGAGT........................................................ 22 2 1 14.00 14 4 10 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGCC....................................................... 23 2 1 13.00 13 11 1 0 1 0 0 0 0 0
................................................................................................TATCACAGGCATTTTGATGAGTT....................................................... 23 1 1 13.00 13 4 1 7 1 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGAGGAGT........................................................ 22 1 3 13.00 39 6 8 14 8 1 2 0 0 0
................................................................................................TACCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 13.00 13 10 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTCATGAGTT....................................................... 23 1 1 13.00 13 0 1 4 8 0 0 0 0 0
................................................................................................TATCACAGTCATTTTGATGAGT........................................................ 22 1 1 12.00 12 0 3 5 4 0 0 0 0 0
................................................................................................TTTTACAGCCATTTTGATGAGTT....................................................... 23 2 1 12.00 12 7 5 0 0 0 0 0 0 0
................................................................................................TAGCACAGCCATTTTGATGAGT........................................................ 22 1 1 12.00 12 0 4 1 7 0 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAGTTT...................................................... 25 1 1 12.00 12 2 10 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATAAGT........................................................ 22 1 1 12.00 12 3 4 3 2 0 0 0 0 0
.........................................................CCCATCAAACGGTTGTGAAAT................................................................................................ 21 0 1 12.00 12 5 2 2 1 2 0 0 0 0
................................................................................................TATCACAGCCATTTTGAGGAGTT....................................................... 23 1 3 11.67 35 13 3 13 2 1 3 0 0 0
................................................................................................TATCACAGCCATTTTGACGAGTTCC..................................................... 25 2 3 11.33 34 0 6 0 2 1 15 0 10 0
................................................................................................TATCACAGCCATTTTAATGAGT........................................................ 22 1 1 11.00 11 4 7 0 0 0 0 0 0 0
.................................................................................................ATAACAGCCATTTTGATGAGTT....................................................... 22 1 1 11.00 11 4 7 0 0 0 0 0 0 0
................................................................................................TATCACAGCAATTTTGATGAGT........................................................ 22 1 1 11.00 11 0 1 5 5 0 0 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 11.00 11 9 2 0 0 0 0 0 0 0
...............................................................................................TTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 11.00 11 6 3 0 1 1 0 0 0 0
................................................................................................TATCACCGCCATTTTGATGAGTT....................................................... 23 1 1 11.00 11 0 0 10 1 0 0 0 0 0
................................................................................................TATCACAGCCATTGTGATGAGTT....................................................... 23 1 1 11.00 11 2 1 5 3 0 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................... 23 0 1 10.00 10 0 7 0 0 3 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGTGTT....................................................... 23 2 1 10.00 10 8 0 2 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGTTGAGT........................................................ 22 1 1 10.00 10 1 0 7 2 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................... 24 1 1 10.00 10 3 3 1 3 0 0 0 0 0
................................................................................................TATCACAGCCATTTGGATGAGTT....................................................... 23 1 1 10.00 10 2 0 5 3 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGC........................................................ 22 2 1 10.00 10 4 5 1 0 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAG......................................................... 21 1 1 10.00 10 3 5 0 2 0 0 0 0 0
................................................................................................TATCATAGCCATTTTGATGAGT........................................................ 22 1 1 10.00 10 1 3 3 3 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGCTGCGTT....................................................... 23 2 1 10.00 10 0 0 6 4 0 0 0 0 0
................................................................................................TATCACACCCATTTTGATGAGT........................................................ 22 1 1 10.00 10 1 5 0 4 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGACTT....................................................... 23 1 1 10.00 10 2 1 3 4 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGG........................................................ 22 1 1 10.00 10 0 2 6 2 0 0 0 0 0
................................................................................................TATCACAGACATTTTGATGAGTC....................................................... 23 2 1 10.00 10 9 1 0 0 0 0 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAGCTT...................................................... 24 3 1 10.00 10 1 0 0 1 0 8 0 0 0
................................................................................................TATCACAGCCATTTAGATGAGTT....................................................... 23 1 1 9.00 9 5 0 2 2 0 0 0 0 0
................................................................................................TATCACAGACCTTTTGATGAGTT....................................................... 23 2 1 9.00 9 4 1 3 1 0 0 0 0 0
................................................................................................TATAACAGCCATTTTGATGAGT........................................................ 22 1 1 9.00 9 0 0 6 3 0 0 0 0 0
................................................................................................TATCACAGCGATTTTGATGAGTT....................................................... 23 1 1 9.00 9 3 1 3 2 0 0 0 0 0
..........................................................CCATCAAACGGTTGTGAAATG............................................................................................... 21 0 1 9.00 9 0 0 4 0 5 0 0 0 0
................................................................................................TAGCACAGACATTTTGATGAGTT....................................................... 23 2 1 9.00 9 0 0 9 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGCTA...................................................... 24 2 1 9.00 9 1 1 6 1 0 0 0 0 0
................................................................................................TATCACAGCCATTGTGATGAGT........................................................ 22 1 1 9.00 9 0 5 2 2 0 0 0 0 0
................................................................................................TATCACGGCCATTTTGATGAG......................................................... 21 1 1 9.00 9 0 4 0 5 0 0 0 0 0
................................................................................................TATCACAGCCAGCTTGATGAG......................................................... 21 2 1 9.00 9 1 1 1 0 2 2 0 2 0
................................................................................................TATGACAGCCATTTTGATGAGTT....................................................... 23 1 1 9.00 9 3 1 4 1 0 0 0 0 0
...................................................................................................CACAGCCATTTTGATGAGT........................................................ 19 0 1 9.00 9 1 5 1 0 2 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGCT....................................................... 23 2 1 9.00 9 7 2 0 0 0 0 0 0 0
.....................................................................................................CAGCCATTTTGATGAGTT....................................................... 18 0 1 9.00 9 4 0 2 2 1 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAA......................................................... 21 1 1 9.00 9 0 8 0 0 1 0 0 0 0
................................................................................................TATCACAGCCATTTTGATTAGTC....................................................... 23 2 1 8.00 8 8 0 0 0 0 0 0 0 0
................................................................................................TATCACAACCATTTTGATGAGT........................................................ 22 1 1 8.00 8 1 4 3 0 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGAGTTT...................................................... 24 1 1 8.00 8 6 2 0 0 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTTC...................................................... 24 2 1 8.00 8 3 5 0 0 0 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGAG......................................................... 22 1 1 8.00 8 0 8 0 0 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGTGTT....................................................... 23 2 1 8.00 8 5 3 0 0 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGGGTT....................................................... 23 2 1 8.00 8 1 7 0 0 0 0 0 0 0
................................................................................................TATTACAGCCCTTTTGATGAGTT....................................................... 23 2 1 8.00 8 5 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCAGCTTGATGA.......................................................... 20 2 1 8.00 8 1 2 0 0 4 1 0 0 0
................................................................................................TTTCACAGCCATTTTGATGAG......................................................... 21 1 1 8.00 8 1 7 0 0 0 0 0 0 0
................................................................................................TATCAGAGCCATTTTGATGAGTC....................................................... 23 2 1 8.00 8 8 0 0 0 0 0 0 0 0
................................................................................................TGTCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 8.00 8 6 2 0 0 0 0 0 0 0
...............................................................................................CGATCACAGCCATTTTGATGAGTC....................................................... 24 3 1 8.00 8 7 1 0 0 0 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAGC........................................................ 21 1 1 7.00 7 0 7 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGTGC........................................................ 22 2 1 7.00 7 0 7 0 0 0 0 0 0 0
................................................................................................TATCACATCCATTTTGATGAGT........................................................ 22 1 1 7.00 7 0 4 0 0 3 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGTGTC....................................................... 23 2 1 7.00 7 4 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGACT........................................................ 22 1 1 7.00 7 2 2 1 2 0 0 0 0 0
................................................................................................TATCAGAGCCATTTTGATGAGT........................................................ 22 1 1 7.00 7 2 4 0 1 0 0 0 0 0
.................................................................................................ATCACAGCCATTTTGATGAG......................................................... 20 0 1 7.00 7 0 2 0 0 5 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGATTC....................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGCGTT....................................................... 23 2 1 7.00 7 0 0 7 0 0 0 0 0 0
................................................................................................TATTACAGACATTTTGATGAGTT....................................................... 23 2 1 7.00 7 5 1 1 0 0 0 0 0 0
................................................................................................TATCACAGCCAGCTTTATGAG......................................................... 21 3 1 7.00 7 0 1 0 0 5 1 0 0 0
................................................................................................TTTCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 7.00 7 5 2 0 0 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGTTC...................................................... 24 2 1 7.00 7 3 4 0 0 0 0 0 0 0
...............................................................................................ATATCACAGCCATTTTGATGAGTT....................................................... 24 0 1 7.00 7 5 1 0 0 1 0 0 0 0
.........................................................CGCATCAAACGGTTGTGAAATG............................................................................................... 22 1 1 7.00 7 6 1 0 0 0 0 0 0 0
................................................................................................TGTCACAGCCCTTTTGATGAGT........................................................ 22 2 1 6.00 6 4 2 0 0 0 0 0 0 0
.............................................................................................ATCTATCACAGCCATTTTGATGAGTT....................................................... 26 3 1 6.00 6 4 2 0 0 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGG........................................................ 22 2 1 6.00 6 0 0 4 2 0 0 0 0 0
................................................................................................CATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 6.00 6 6 0 0 0 0 0 0 0 0
...............................................................................................CTAGCACAGCCATTTTGATGAGTT....................................................... 24 2 1 6.00 6 3 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................... 25 1 1 6.00 6 2 2 0 1 1 0 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGC........................................................ 22 2 1 6.00 6 3 3 0 0 0 0 0 0 0
...............................................................................................CTAACACAGCCATTTTGATGAGTT....................................................... 24 2 1 6.00 6 3 3 0 0 0 0 0 0 0
................................................................................................TACTACAGCCATTTTGATGAGT........................................................ 22 2 1 6.00 6 1 5 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATATTGATGAGTT....................................................... 23 1 1 6.00 6 4 0 1 1 0 0 0 0 0
................................................................................................TATTTCAGCCATTTTGATGAGTT....................................................... 23 2 1 6.00 6 6 0 0 0 0 0 0 0 0
................................................................................................TATCACAGCCGTTTTGATGAG......................................................... 21 1 1 6.00 6 0 0 0 5 1 0 0 0 0
................................................................................................TATCACAGCCATTTCGATGAGT........................................................ 22 1 1 6.00 6 1 3 1 1 0 0 0 0 0
................................................................................................TATCACAGCCATTCTGATGAGT........................................................ 22 1 1 6.00 6 1 2 2 1 0 0 0 0 0
.................................................................................................ATAACAGCCATTTTGATGAGT........................................................ 21 1 1 6.00 6 1 5 0 0 0 0 0 0 0
................................................................................................TGTTACAGCCATTTTGATGAGTC....................................................... 23 3 1 6.00 6 6 0 0 0 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGGTGAGTT....................................................... 23 2 1 6.00 6 0 0 4 2 0 0 0 0 0
................................................................................................TATCCCAGCCATTTTGATGAGTT....................................................... 23 1 1 6.00 6 2 0 2 2 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGACGAGTTAC..................................................... 25 2 3 5.67 17 4 0 3 0 8 0 0 0 2
................................................................................................TATCACAGCCATTTTGATCAGT........................................................ 22 1 1 5.00 5 0 2 1 2 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGATGAGT........................................................ 22 1 1 5.00 5 0 0 3 2 0 0 0 0 0
................................................................................................TATCACAGACATTTTGTTGAGTT....................................................... 23 2 1 5.00 5 0 0 4 1 0 0 0 0 0
................................................................................................TATCACAGCCTTTTTGATGAGTT....................................................... 23 1 1 5.00 5 0 0 3 1 0 1 0 0 0
................................................................................................TATCACAGCCATTTTCATGAGT........................................................ 22 1 1 5.00 5 0 2 0 3 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGGTGGGTT....................................................... 23 3 1 5.00 5 0 0 5 0 0 0 0 0 0
................................................................................................TGTCACAGCCGTTTTGATGAGTT....................................................... 23 2 1 5.00 5 0 2 1 2 0 0 0 0 0
................................................................................................TATCACAGCTATTTTGATGAGT........................................................ 22 1 1 5.00 5 2 2 1 0 0 0 0 0 0
................................................................................................TATCACGGCCATTTTGATGAGC........................................................ 22 2 1 5.00 5 1 4 0 0 0 0 0 0 0
.........................................................CCCATCAAACGGTTGTGAA.................................................................................................. 19 0 1 5.00 5 1 0 0 0 3 0 1 0 0
................................................................................................TGCCACAGCCATTTTGATGAGTT....................................................... 23 2 1 5.00 5 3 2 0 0 0 0 0 0 0
................................................................................................TATCATAGCCATTTTGATGAGTC....................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0 0 0
...............................................................................................CTATCACAGCCATTTTGATGGGTT....................................................... 24 2 1 5.00 5 3 2 0 0 0 0 0 0 0
................................................................................................TTTCACAGCCATTTTGATGAGC........................................................ 22 2 2 5.00 10 4 6 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATAAGTC....................................................... 23 2 1 5.00 5 4 1 0 0 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGA.......................................................... 20 1 1 5.00 5 0 5 0 0 0 0 0 0 0
................................................................................................TGCCACAGCCATTTTGATGAGT........................................................ 22 2 1 5.00 5 0 5 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGGTGAGGT....................................................... 23 2 1 5.00 5 0 0 5 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGATTTT...................................................... 24 1 1 5.00 5 2 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATGTTGATGAGT........................................................ 22 1 1 5.00 5 0 1 3 1 0 0 0 0 0
................................................................................................TATTACGGCCATTTTGATGAGTT....................................................... 23 2 1 5.00 5 1 4 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGGGC........................................................ 22 2 1 5.00 5 0 4 0 1 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGATGATTT....................................................... 23 2 1 5.00 5 4 0 0 1 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGACGAGTTCCC.................................................... 26 3 3 4.67 14 0 3 0 1 0 6 0 4 0
................................................................................................TATCACAGCCAGTTTGGTGAGGT....................................................... 23 3 2 4.50 9 0 0 9 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGAAGAGG........................................................ 22 2 3 4.33 13 0 0 13 0 0 0 0 0 0
................................................................................................TATCACAGCCAGTTTGAAGAGG........................................................ 22 3 3 4.33 13 0 0 13 0 0 0 0 0 0
................................................................................................TATAACAGACATTTTGATGAGTT....................................................... 23 2 1 4.00 4 0 0 3 1 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGCT....................................................... 23 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................................................CATCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 4.00 4 2 1 0 1 0 0 0 0 0
................................................................................................TATCACAGACATTTTGCTGAGTT....................................................... 23 2 1 4.00 4 0 0 4 0 0 0 0 0 0
................................................................................................TTTTACAGCCATTTTGATGAGT........................................................ 22 2 1 4.00 4 3 1 0 0 0 0 0 0 0
...............................................................................................GTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 4.00 4 0 0 0 0 4 0 0 0 0
................................................................................................GATCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................................................TATCACAGCCAATTTGATGAGTT....................................................... 23 1 1 4.00 4 0 1 1 2 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATTAGTT....................................................... 23 2 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................................................TATCACAGACATTTTGATGAGC........................................................ 22 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCTTTTTGATGAGT........................................................ 22 1 1 4.00 4 0 1 3 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGAAT........................................................ 22 1 1 4.00 4 0 1 2 1 0 0 0 0 0
................................................................................................TATCACACCCATTTTGATGAGTC....................................................... 23 2 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................................................TACCACAGCCATTTTGATGAGTTA...................................................... 24 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGTTGTGTT....................................................... 23 2 1 4.00 4 0 0 3 1 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGGGTT....................................................... 23 2 1 4.00 4 0 3 0 0 1 0 0 0 0
................................................................................................TATTACGGCCATTTTGATGAGT........................................................ 22 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGGTGTGTT....................................................... 23 2 1 4.00 4 0 0 3 1 0 0 0 0 0
..............................................................................................CCTATCACAGCCATTTTGATGAGTT....................................................... 25 1 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................................................TAGCACAGCCAGTTTGATGAGTT....................................................... 23 2 1 4.00 4 0 0 1 3 0 0 0 0 0
................................................................................................TATCACAGCCAGGTTGATGAGTT....................................................... 23 2 1 4.00 4 0 0 2 2 0 0 0 0 0
................................................................................................TATCACGGCCATTTTTATGAGTT....................................................... 23 2 1 4.00 4 0 0 0 4 0 0 0 0 0
.........................................................CCCATCAAACGGTTGTGCAATG............................................................................................... 22 1 1 4.00 4 0 0 4 0 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGTGT........................................................ 22 2 1 4.00 4 1 1 2 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGCGCT....................................................... 23 2 1 4.00 4 0 0 1 3 0 0 0 0 0
................................................................................................TATTACAGCCATTTTGATGAGTTA...................................................... 24 2 1 4.00 4 3 1 0 0 0 0 0 0 0
.............................................................................................AGCTATCACAGCCATTTTGATGAGTT....................................................... 26 3 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGCTGAGCT....................................................... 23 2 1 4.00 4 0 0 1 3 0 0 0 0 0
................................................................................................TAACACAGACATTTTGATGAGTT....................................................... 23 2 1 4.00 4 0 0 4 0 0 0 0 0 0
....................................................................................................ACAGCCATTTTGATGAGTTT...................................................... 20 0 1 4.00 4 0 1 0 3 0 0 0 0 0
.................................................................................................ATCTCAGCCATTTTGATGAGTT....................................................... 22 1 1 4.00 4 2 2 0 0 0 0 0 0 0
................................................................................................TACCACAGACATTTTGATGAGTT....................................................... 23 2 1 4.00 4 3 0 1 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGACGAGTTTC..................................................... 25 1 3 3.33 10 1 0 0 1 3 1 0 3 1
................................................................................................TATCACAGCCCTTTTGATGATT........................................................ 22 2 1 3.00 3 0 3 0 0 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGA.......................................................... 20 1 1 3.00 3 0 2 0 0 1 0 0 0 0
.........................................................CCAATCAAACGGTTGTGAAATG............................................................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0
................................................................................................TATCACACCCATTTTGATGAGC........................................................ 22 2 1 3.00 3 1 1 0 1 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGCTGAGTT....................................................... 23 2 1 3.00 3 0 0 2 1 0 0 0 0 0
................................................................................................TGTCACAGCCATTTTGATGAGTTA...................................................... 24 2 1 3.00 3 2 1 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATTAGTTT...................................................... 24 1 1 3.00 3 1 0 1 1 0 0 0 0 0
................................................................................................TATCACAGCCACTTTGCTGAGTT....................................................... 23 2 1 3.00 3 0 0 0 3 0 0 0 0 0
................................................................................................TATAACAGCCATTTTGTTGAGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0 0 0 0
................................................................................................TATCACAGCCCTTTTGTTGAGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0 0 0 0
................................................................................................TAACACAGCCATTTTGATGAGT........................................................ 22 1 1 3.00 3 0 0 1 2 0 0 0 0 0
................................................................................................TATCACAGCCGTTTTGATGAGC........................................................ 22 2 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................AGCACAGCCATTTTGATGAGTC....................................................... 22 2 1 3.00 3 1 2 0 0 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATGTG......................................................... 21 1 1 3.00 3 1 1 1 0 0 0 0 0 0
................................................................................................TATCACAGACATTTTGATGAGGT....................................................... 23 2 1 3.00 3 0 0 2 1 0 0 0 0 0
................................................................................................TATCACAGCCATTTTGATTAGCT....................................................... 23 2 1 3.00 3 1 0 2 0 0 0 0 0 0

Anti-sense strand reads

CAAGCCGAGCATGAAAAACCTGTTTTTTTTTTTTGGCAGTCGGGGTATGAATGCATTGGGTAGTTTGCCAACACTTTACAACGTAAATAGTTTAGTATAGTGTCGGTAAAACTACTCAAAGCACACCTTACCGGTCGTTAGGTAGTAGCTAGCCCCGTCCCGTCCTACCTCGTG

****************************************.((((.((((((.(((.(((((((.((((((((.(((...............))).))))))))..))))))).))).)))).)).))))..****************************************** 		Read size # Mismatch Hit Count Total Norm Total M059

embryo

 SRR902012

CNS imaginal disc

 GSM343916

embryo
.............................................................................................................................................GTAGTAGCTAGCCCCGTCCCGT........... 22 0 1 1.00 1 1 0 0
..................................GGCAGTCGGGGTATGAA........................................................................................................................... 17 0 1 1.00 1 0 1 0
.............................TTTTTGGAAGTTGGGGTAT.............................................................................................................................. 19 2 2 0.50 1 0 0 1
..................................GGCATTCGGGGAATGAAGG......................................................................................................................... 19 3 11 0.09 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 2:9824889-9825062 + dps-mir-13a Known_mirbase -----------------------GTTCG---G---------------CTCGTACTTT--------TTG-------------------GACAAAAAAAAAAAACCGTCAGCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGAA-TGGCC---AG---C--------------------A--ATC-CA-----T--------CATCGATCG-----GGGC-------------------------------------AGGGCAGGATGGAGCAC
droPer2 scaffold_0:10660033-10660204 - dpe-mir-13a Known_mirbase -----------------------GTTCG---G---------------CTCGTACTAT--------TTG-------------------GACAAAAAAAAA--ACCGTCATCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGAA-TGGCC---AG---C--------------------A--ATC-CA-----T--------CATCGATCG-----GGGC-------------------------------------AGGGCAGGATGGAGCAC
droWil2 scf2_1100000004902:2143180-2143337 - dwi-mir-13a Known_mirbase -----------------------GTTTTTTTGGAATCC-GTTCCGGCAA---AAGAT----------------------------------------GG------------AATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATTC----CTGCAACAGTA--------TTCG--AAA--T-----------------------------------------GG----AT--GGTAT---------------C----------------CTT
droVir3 scaffold_13047:13335571-13335764 + dvi-mir-13a Known_mirbase -----------------------GTTTG---C--ATCTTATTACGGTGAT---AGATAACGTCGCTTC-------------------GATACGTAAAGA--CCAACCCACTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCT---TA-----------------------AA--TT--CATTG-CCCTCGTCGGCA--GAATGGGCTG--GCA--AGG----AC--GAT------------------------------------T
droMoj3 scaffold_6540:10568303-10568481 + dmo-mir-13a Known_mirbase -----------------------GTTTG---C---------------ATCTCATTAT--------ATG------------------GGACACTTAACGATCTCCGCCCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TTGCTTTCAGCA-------------------------TTG-TC-----C--------CATCC---------------------------G------------TTT-TGTGTCACTGGATTATCCACCTC
droGri2 scaffold_14906:4357635-4357829 - dgr-mir-13a Known_mirbase -----------------------GTTTG---T---------------ATCTCATTAT--------TTTATTCTTGCATACATCTGCAGACTGTGAGCGAACCAAGCCCACCCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCTTTCAT------------------CA--CAGTGAT--CATTGTCC------------------CTCGCCGG----GG----CC--G------------GTT-CGTG------------------C
droAna3 scaffold_13340:12827581-12827744 - dan-mir-13a Known_mirbase -----------------------GTGCTACAAGAATCC-CCTC--------------------------------------------AA----AAAAGG--ACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TCGTC---AG-----------------------AA--AAC-CG-----T--------CA--GAAAGGGGCGCGGCGGCAG---------GATGT----------------------------------C
droBip1 scf7180000396691:1710473-1710633 - -----------------------GTTCT---CGAAGCC-CCCCT---AACCCG------------------------------------------------AAGATCCATCCAGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTCCA---AA-----------------------AA--ATCGCA-----T--------CGT-----GGGGCGCGGCA---G-----GC--GATTTCGTA-----------------------------AC
droKik1 scf7180000302639:1443194-1443319 + -----------------------GTTTG---T---------------GATCCAAGAT---------------------------------------------------GTCTGATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TTT----CGGCAGCCAGA----------AG----G--A-----------------------------------------GT----------------------------------------------AC
droFic1 scf7180000452523:592225-592372 - -----------------------GTTCG---T---------------GATCCCATAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCTGGG----------CA--AAT--A-----------------------------------------TC-------AATTTCCATAACCGATTGTATC------------------C
droEle1 scf7180000491080:1007096-1007232 - -----------------------GTTCG---T---------------GATCCGACAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CAGCAACTGGA----------TA-------G-----------------------------------------ACATAAATCAGTTTTT--------------------------------AT
droRho1 scf7180000779250:92649-92788 + -----------------------GTTCG---T---------------GATATATA-T---G----TCG-------------------GAT--------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCTGGG----------CT--AAA--A-----------------------------------------TC-------AAGTTTC--------------------------------AT
droBia1 scf7180000302136:835521-835655 - -----------------------GTTCG---T---------------GATCCAACAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCCGGT----------CA--AAA--A-----------------------------------------TC-------GCATTTCGCA-------------------------------
droTak1 scf7180000415769:1925964-1926092 + -----------------------GTTCG---T---------------GATCCAACAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCTGGG----------CACTAAA--A-----------------------------------------TC----------------------------------------------AT
droEug1 scf7180000409281:109525-109673 + -----------------------GTTCG---T---------------GATCCGATAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TTT----CGGCATCTGGT----------CA--AAGTTA-----------------------------------------TT-------ATATTTCATAACCGATT-TATT------------------C
dm3 chr3R:11243236-11243383 - dme-mir-13a Known_mirbase TTGGA--TGCTAAACCAACAAGTGTTTG---T---------------GATCCAAGCC-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCG----CGGCAGCGGAT----------CA--AAA--A-----------------------------------------AC----------------------------------------------AT
droSim2 3r:9985574-9985728 + dsi-mir-13a Known_mirbase TTGGATATGCTAAACCAACAAGTGTTCG---T---------------GATCCAAGCC-----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCT----CGGCAGCGGAT----------CG--AAA--A-----------------------------------------AC-------ATATTT----------------------------------C
droSec2 scaffold_0:10705044-10705175 + dse-mir-13a Known_mirbase -----------------------GTTCG---T---------------GATCCAAGCC-----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCT----GGTCAGCGGAT----------CG--AAA--A-----------------------------------------AC-------ATATTT----------------------------------C
droYak3 3R:15188568-15188707 + dya-mir-13a Known_mirbase -----------------------GTTCG---T---------------GATCCAAGCC-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCT----CGGCAACTTATTTCATGTATTTC----A--A-----------------------------------------AC-------ATATTT----------------------------------C
droEre2 scaffold_4770:10769369-10769502 - der-mir-13a Known_mirbase -----------------------GTTCG---T---------------GATCCAAGAC-----------------------------------------------------ACAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----AAAAAGCGGGT----------TAAG-AA--A-----------------------------------------AC-------ATATTTC--------------------------------A-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
-----------------------GTTCG---G---------------CTCGTACTTT--------TTG-------------------GACAAAAAAAAAAAACCGTCAGCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGAA-TGGCC---AG---C--------------------A--ATC-CA-----T--------CATCGATCG-----GGGC-------------------------------------AGGGCAGGATGGAGCACSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23156311.005631101841297839000899764231911075
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................22115200.001520007342925767412772500731016
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................2313063.003063022672379631000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................2211455.00145500479966280000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................2111058.00105809190549492715012
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2411054.001054038408412391487002
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................221368.00368014212795220000
.............................................................................................................................CCCATCAAAC-GGTTGTGAAATG........................................................................................................................................................................................221333.00333045493217100009
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191187.00187017591830000
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................201160.001600275119180000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................211160.00160056794120000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................241133.00133017844460000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................241119.00119086328693002
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21180.00800831201720002
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................19151.0051013329240000
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18146.0046002013310000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................23140.004000286510000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22134.003404518070000
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20134.0034021114160000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................21125.002500718000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23124.002400106530000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................20123.002303116110001
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC............................................................................................................................................22117.001700134000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGAC............................................................................................................................................23116.001600142000000
.............................................................................................................................CCCATCAAAC-GGTTGTGAAA..........................................................................................................................................................................................20115.00150251160000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC............................................................................................................................................23113.001300111010000
.............................................................................................................................CCCATCAAAC-GGTTGTGAAAT.........................................................................................................................................................................................21112.00120252210000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................23110.00100307000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................24110.00100033130000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................22110.00100002620000
..............................................................................................................................CCATCAAAC-GGTTGTGAAATG........................................................................................................................................................................................2119.0090500400000
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................1919.0090215100000
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................1819.0090140220000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAA..............................................................................................................................................2119.0090108000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGC.............................................................................................................................................2117.0070007000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................2017.0070502000000
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................2417.0070151000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT..........................................................................................................................................2516.0060122010000
.............................................................................................................................CCCATCAAAC-GGTTGTGAA...........................................................................................................................................................................................1915.0050310000001
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTT...........................................................................................................................................2014.0040001030000
droPer2
-----------------------GTTCG---G---------------CTCGTACTAT--------TTG-------------------GACAAAAAAAAA--ACCGTCATCCCCATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGAA-TGGCC---AG---C--------------------A--ATC-CA-----T--------CATCGATCG-----GGGC-------------------------------------AGGGCAGGATGGAGCACSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23114724.001472417346227965765406100
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................2214959.00495953163632380186332
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................211477.0047714592571623
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................241361.003610651531898
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191147.00147001670610
.............................................................................................................................CCCATCAAAC-GGTTGTGAAATG........................................................................................................................................................................................22193.0093134488200
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18158.005800331240
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................22142.00423311340
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................24140.004001512220
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21132.00320290210
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................22121.002100011100
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................23119.00190106120
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................24117.0017002951
.............................................................................................................................CCCATCAAAC-GGTTGTGAAAT.........................................................................................................................................................................................21115.00152100111
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................22112.0012022350
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22112.0012011640
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23110.0010000370
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20110.0010211510
.............................................................................................................................CCCATCAAAC-GGTTGTGAAA..........................................................................................................................................................................................20110.0010111430
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................2019.009012240
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................2117.007001420
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................1916.006110130
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT..........................................................................................................................................2516.006010140
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................1815.005011300
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................2315.005000140
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................2515.005000320
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................2014.004020200
.............................................................................................................................CCCATCAAAC-GGTTGTGA............................................................................................................................................................................................1814.004000040
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................2014.004040000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................2413.003000120
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................1813.003100020
...........................................................................................................................................................................TCACAGCCATTTTGATGAG..............................................................................................................................................1913.003000210
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAA...........................................................................................................................................2412.002000110
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTT...........................................................................................................................................2012.002000020
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTA...........................................................................................................................................2012.002001010
.............................................................................................................................CCCATCAAAC-GGTTGTGAAATGA.......................................................................................................................................................................................2312.002200000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2312.002010010
.........................................................................................................................................................................TATCACAGCCATTTTGATGATC.............................................................................................................................................2212.002000020
................................................................................................................................................................................................TCGTGTGGAA-TGGCC---AG---C--------------------...............................................................................................1812.002000020
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................1912.002002000
droWil2
-----------------------GTTTTTTTGGAATCC-GTTCCGGCAA---AAGAT----------------------------------------GG------------AATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATTC----CTGCAACAGTA--------TTCG--AAA--T-----------------------------------------GG----AT--GGTAT---------------C----------------CTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23154258.005425824712822583985612615
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................22110521.00105211793935036416258
.............................................................................................................................CTCTTCAAGGGGGTTGTGAAATG........................................................................................................................................................................................2314092.00409224153299772
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................2111119.001119234402115728
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................241289.00289010721458
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................221157.00157211102816
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................241143.0014303001067
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................191109.001095320153
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191108.0010812016629
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................251105.001050210840
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21183.008301004627
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................20163.0063860247
..............................................................................................................................TCTTCAAGGGGGTTGTGAAATG........................................................................................................................................................................................22155.0055012439
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................23147.00470003215
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18144.00444001228
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21141.0041526037
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................22138.0038500429
....................................................................................................................................................TTGCC-ATTTTATTCAACTCA...................................................................................................................................................................20129.0029820163
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20126.0026030716
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................22125.0025180025
.............................................................................................................................CTCTTCAAGGGGGTTGTGAAAT.........................................................................................................................................................................................22121.0021000210
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23121.0021020811
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22120.0020010316
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................19120.0020010019
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.........................................................................................................................................26217.0034050290
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................20116.0016000115
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................18114.001404037
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................21113.0013120001
.............................................................................................................................CTCTTCAAGGGGGTTGTGAAA..........................................................................................................................................................................................21112.0012000120
..............................................................................................................................TCTTCAAGGGGGTTGTGAAA..........................................................................................................................................................................................20111.001102153
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTTT...........................................................................................................................................22110.001000082
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................24110.001013042
..............................................................................................................................TCTTCAAGGGGGTTGTGA............................................................................................................................................................................................1819.00900045
..............................................................................................................................TCTTCAAGGGGGTTGTGAAAT.........................................................................................................................................................................................2118.00800053
....................................................................................................................................................TTGCC-ATTTTATTCAACTC....................................................................................................................................................................1918.00860011
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................2427.5015000105
.............................................................................................................................CTCTTCAAGGGGGTTGTG.............................................................................................................................................................................................1817.00710024
.............................................................................................................................CTCTTCAAGGGGGTTGTGAA...........................................................................................................................................................................................2016.00600060
.............................................................................................................................CTCTTCAAGGGGGTTGTGA............................................................................................................................................................................................1916.00600042
.........................................................................................................................................................................TATCACAGCCATTTTGATAGT..............................................................................................................................................2185.88470011630
.............................................................................................................................CTCTTCAAGGGGGTTGTGAAATT........................................................................................................................................................................................2315.00500050
.........................................................................................................................................................................TATCACAGCCATTTTGATGT...............................................................................................................................................2015.00500005
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAA...........................................................................................................................................2415.00500050
.........................................................................................................................................................................TATCACAGCCATTTTGATGG...............................................................................................................................................2014.00440000
.............................................................................................................................CTCTTCAAGGGGGTTGTGAAATA........................................................................................................................................................................................2314.00400022
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTA...........................................................................................................................................2313.00303000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAT..........................................................................................................................................2513.00300030
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2313.00303000
.............................................................................................................................CTCTTCAAGGGGGTTGTGAAATC........................................................................................................................................................................................2313.00300012
.........................................................................................................................................................................TATCACAGCCATTTTGATGTT..............................................................................................................................................2113.00301002
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTTA...........................................................................................................................................2213.00300012
.........................................................................................................................................................................TATCACAGCCATTTTGATGAA..............................................................................................................................................2112.00200002
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................2012.00201001
.............................................................................................................................CTCTTCAAGGGGGTTGTGAATG.........................................................................................................................................................................................2212.00200011
.........................................................................................................................................................................TATCACAGCCATTTTGATGAT..............................................................................................................................................2112.00200011
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAAA..........................................................................................................................................2512.00200020
...........................................................................................................................................................................TCACAGCCATTTTGATGAG..............................................................................................................................................1912.00200002
..........................................................................................................................................................................ATCACAGCCATTTTGATGA...............................................................................................................................................1912.00202000
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................1812.00200002
.............................................................................................................................CTCTTCAAGGGGGTTGTGAAATGT.......................................................................................................................................................................................2412.00200020
droVir3
-----------------------GTTTG---C--ATCTTATTACGGTGAT---AGATAACGTCGCTTC-------------------GATACGTAAAGA--CCAACCCACTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCT---TA-----------------------AA--TT--CATTG-CCCTCGTCGGCA--GAATGGGCTG--GCA--AGG----AC--GAT------------------------------------TSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23130205.0030205224105143455520117283340003195610164461111108155841194012766533355737150522835311670727012612918275910106612111539294251454241758171185056443500101800310023121000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................22119272.0019272039944814163913194181012419161040680151713636881121390155914321653539831109385121487211232316913000000011122222200211128265376012556206004260000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................2416046.00604600201362220790000000201310734121892151211928573371293235311102872200000200000022000041573300000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2413040.00304001511692392003001025713559160142986812819482153216367994221832108161080000000011231210001161371602201100000020000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................2111964.00196426115718160261121000113624886664388983032312171709632908002001500000000120412200139195800211200000100000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................241840.0084000110361001000015731033458109567818113258180920414745390000000000000000000412503200000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................231347.00347005243000000000001011050110010162841902000004000000000000000000039300000000000000000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191248.00248101217100200001411255619791000381121105030001400000000000000000002275000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................251216.002160010001000003000001150234344352412375432391068000000000000000000000204110000000000000
.............................................................................................................................CTCTTCAAGG-GGTTGTGAAATG........................................................................................................................................................................................221204.002040023405010000024053213111000003060004210000000000000100000001046200000200000004310
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................221149.001490511030000000000031210103000002103000000000000000000000000000023000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCA..........................................................................................................................................251139.00139000033100000000000001100102322519435090100511000000000000000000000201100000000000000
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................181124.001240000101101000034377421013000007224060030030000000000000000000139000000000000000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................221115.00115008421000000000011100001300001110000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................20196.00960427600000000005512330620000024010020000000000000000000000000111100000010000000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21196.009600787000000000011200002000000000500000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................19183.00830351510000000000321202023000000201100000000000000000000000011011000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23179.00790002000000000013014360100020141361502010012000000000000000000002000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................24175.00750010000000000025153021200000101421202001103000000000000000000008000000000000000000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTC...........................................................................................................................................20173.007300101800000000000000800100009368090000316000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCT..........................................................................................................................................25161.0061000000000000000000002000010099524000000010000000000000000000000100000000000000000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTT...........................................................................................................................................20142.00420000020000000023100327100000132104000008000000000000000000002000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAA...........................................................................................................................................24141.004100001000000000000010000100003451011134023000000000000000000001000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT..........................................................................................................................................25137.00370000000000000044022204200000381500000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22134.00340070000000000022011211200000024600000000000000000000000000003000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.........................................................................................................................................26225.005000000000000030000000100211512126401311310000000000000000000000000100100000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTA..........................................................................................................................................25123.00230000020000000010000010000000330301001003000000000000000000000000500000000000000
..............................................................................................................................TCTTCAAGG-GGTTGTGAAATG........................................................................................................................................................................................21121.00210012000000000000010101000001111100000000000000000000000000042300000000000000001
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................20118.00180032000000000101021000300000320000000000000000000000000000000000000000000000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................20117.001700170000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21115.00150034000000000000000001000000210100000000000000000000000000011100000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTC..........................................................................................................................................25114.00140000000000000000000040000000121300000003000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................18114.00140200000000000011111011000000200200000000000000000000000000001000000000000000000
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20111.00110016100000000000010000000000000000000000000000000000000000011000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................23110.00100003000000000000000000010000000000000000000000000000000000013002000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................22110.00100300000000000010000000000000000000000000000000000000000000006000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTCC...........................................................................................................................................24110.00100000011000000000000010000100001101000003000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAT..........................................................................................................................................25110.00100000000000000000000000000000420301000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTCA...........................................................................................................................................24110.00100000000000000000000000000000151201000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTCC.........................................................................................................................................2619.0090000011000000000000000000000030002000002000000000000000000000000000000000000000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTA...........................................................................................................................................2018.0080000110000000000000000000000101000000004000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................2118.0080401000000000000000000000000000000000000000000000000000000003000000000000000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2318.0080043000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................1817.0070002000000000001100000010000010100000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATC................................................................................................................................................1917.0070000000000000000000000000000320200000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGA..................................................................................................................................................1736.67200000000000000000000000000000000000000000000000000200000000000009600200000000001
.........................................................................................................................................................................TATCACAGCCATTTTGATGAA..............................................................................................................................................2115.0050000000000000000101001000000100000000000000000000000000000001000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTTCC........................................................................................................................................2715.0050000000000000000000000000100010201000000000000000000000000000000000000000000000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTTT...........................................................................................................................................2215.0050001000000000012000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................1915.0050030000000000000101000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAT..............................................................................................................................................2114.0040000000000000000010000010000000000000000000000000000000000002000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTTT.........................................................................................................................................2614.0040000000001000000000000000000102000000000000000000000000000000000000000000000000
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................2414.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGA...............................................................................................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCTC.........................................................................................................................................2614.0040000100000000000000010000000011000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTAA.........................................................................................................................................2623.5070000000000000000000000000021111100000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCAA.........................................................................................................................................2623.5070000000000000000000000000010200201010000000000000000000000000000000000000000000
..........................................................................................................CCACTCAATTCTTGCGTAA...............................................................................................................................................................................................................1913.0030000000000000010000000000000100000000000000000000000000000001000000000000000000
droMoj3
-----------------------GTTTG---C---------------ATCTCATTAT--------ATG------------------GGACACTTAACGATCTCCGCCCATTCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TTGCTTTCAGCA-------------------------TTG-TC-----C--------CATCC---------------------------G------------TTT-TGTGTCACTGGATTATCCACCTCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................231190549.0019054929361155441457518163827569
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................22117075.001707513529341070172111853145
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................2319237.0092377166192070
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2413042.0030425982122264249025
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................2212246.00224628951319480
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................2211724.0017241421117060
.............................................................................................................................CTCTTCAAGG-GGTTGTGAAATG........................................................................................................................................................................................221999.0099954366125373
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................211795.00795160289012038116
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................241423.004231314543816
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................211362.0036259123450
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191351.0035129247951150
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................211243.002431341111060
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................241223.0022361012131811
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................201217.0021752122070
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................231111.0011110021080
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC............................................................................................................................................221107.0010700001070
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................181101.001012111960
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC............................................................................................................................................23190.00900001890
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................20175.0075244710300
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18165.0065220172420
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................24149.00493232390
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................23146.00462000431
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23137.00372043280
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22135.00355115230
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGAC............................................................................................................................................23128.00280000280
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................24126.00261000250
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................19124.00241405500
............................................................................................................................................................................CACAGCCATTTTGATGAGTC............................................................................................................................................20124.00240000240
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................20124.00244003170
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGC.............................................................................................................................................21122.00220000220
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTC............................................................................................................................................21122.00220000220
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT..........................................................................................................................................25120.00201132130
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................22118.0018052380
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................20117.00171400030
.............................................................................................................................CTCTTCAAGG-GGTTGTGAAAT.........................................................................................................................................................................................21115.00150100140
.............................................................................................................................CTCTTCAAGG-GGTTGTGAAA..........................................................................................................................................................................................20115.00150001140
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................21113.00130000130
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................19112.0012220080
.............................................................................................................................................................................ACAGCCATTTTGATGAGTC............................................................................................................................................19111.00110000110
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................2519.009301131
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTA...........................................................................................................................................2319.009200070
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTTT...........................................................................................................................................2217.007000070
.........................................................................................................................................................................TATCACAGCCATTTTGATGATC.............................................................................................................................................2217.007000070
droGri2
-----------------------GTTTG---T---------------ATCTCATTAT--------TTTATTCTTGCATACATCTGCAGACTGTGAGCGAACCAAGCCCACCCAATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCTTTCAT------------------CA--CAGTGAT--CATTGTCC------------------CTCGCCGG----GG----CC--G------------GTT-CGTG------------------CSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................231455.00455293162
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................221180.0018014436
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................22128.0028280
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................21121.0021201
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................24119.0019118
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21117.0017170
.............................................................................................................................CTCTTCAAGG-GGTTGTGAAATG........................................................................................................................................................................................2214.00422
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................2013.00321
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................2112.00220
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................1912.00220
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................2412.00220
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................2412.00220
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2311.00110
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................2411.00110
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................2411.00110
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................2011.00110
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................2211.00101
........................................................................................................................................................................ATATCACAGCCATTTTGATGAG..............................................................................................................................................2211.00110
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................2320.50101
.........................................................................................................................................................................TATCACAGCCATTTTGAGT................................................................................................................................................1960.17101
droAna3
-----------------------GTGCTACAAGAATCC-CCTC--------------------------------------------AA----AAAAGG--ACGATCCATCGAGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TCGTC---AG-----------------------AA--AAC-CG-----T--------CA--GAAAGGGGCGCGGCGGCAG---------GATGT----------------------------------CSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23122015.0022015284667547844153759788
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................2217585.0075851605589312511045419
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................211713.0071320152749593
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................241490.00490790716130195
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................231461.0046104510613
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................221134.00134011409011
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................22198.009833570017
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................24162.0062225213416
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................19157.00570824007
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................20152.005251504127
.............................................................................................................................CTCCTCAAAG-GGCTGTGAAATG........................................................................................................................................................................................22150.005081032117
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................19143.00432504032
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................24128.00280007021
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21128.00282151217
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18123.00230011516
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21121.00211070004
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20119.00190120106
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................23118.0018071307
.........................................................................................................................................................................TATCACAGCCATTTTGATGAT..............................................................................................................................................21117.00170000017
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23115.0015111309
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................25113.0013190003
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................24111.0011120305
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22110.0010001108
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................2019.009020007
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................2217.007000205
..............................................................................................................................TCCTCAAAG-GGCTGTGAAATG........................................................................................................................................................................................2116.006300300
.............................................................................................................................CTCCTCAAAG-GGCTGTGA............................................................................................................................................................................................1816.006100401
.............................................................................................................................CTCCTCAAAG-GGCTGTGAA...........................................................................................................................................................................................1916.006001410
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................1916.006010104
.........................................................................................................................................................................TATCACAGCCATTTTGATGT...............................................................................................................................................2016.006000105
.............................................................................................................................CTCCTCAAAG-GGCTGTGAAAT.........................................................................................................................................................................................2115.005131000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAA..............................................................................................................................................2115.005100004
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................1814.004110002
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................1814.004040000
.............................................................................................................................CTCCTCAAAG-GGCTGTGAAA..........................................................................................................................................................................................2014.004010201
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2314.004110002
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT..........................................................................................................................................2514.004000211
.........................................................................................................................................................................TATCACAGCCATTTTGAGT................................................................................................................................................1943.00120000012
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.........................................................................................................................................2613.003030000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC............................................................................................................................................2313.003030000
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................2413.003030000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTG..........................................................................................................................................2533.009000207
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGAC............................................................................................................................................2313.003030000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................2113.003020001
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCA............................................................................................................................................2313.003010002
.........................................................................................................................................................................TATCACAGCCATTTTGATGATC.............................................................................................................................................2212.002000200
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTC............................................................................................................................................2112.002020000
droBip1
-----------------------GTTCT---CGAAGCC-CCCCT---AACCCG------------------------------------------------AAGATCCATCCAGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTCCA---AA-----------------------AA--ATCGCA-----T--------CGT-----GGGGCGCGGCA---G-----GC--GATTTCGTA-----------------------------ACSizeHit CountTotal NormTotal
No Reads
droKik1
-----------------------GTTTG---T---------------GATCCAAGAT---------------------------------------------------GTCTGATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TTT----CGGCAGCCAGA----------AG----G--A-----------------------------------------GT----------------------------------------------ACSizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------GTTCG---T---------------GATCCCATAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCTGGG----------CA--AAT--A-----------------------------------------TC-------AATTTCCATAACCGATTGTATC------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
-----------------------GTTCG---T---------------GATCCGACAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CAGCAACTGGA----------TA-------G-----------------------------------------ACATAAATCAGTTTTT--------------------------------ATSizeHit CountTotal NormTotal
No Reads
droRho1
-----------------------GTTCG---T---------------GATATATA-T---G----TCG-------------------GAT--------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCTGGG----------CT--AAA--A-----------------------------------------TC-------AAGTTTC--------------------------------ATSizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------GTTCG---T---------------GATCCAACAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCCGGT----------CA--AAA--A-----------------------------------------TC-------GCATTTCGCA-------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
-----------------------GTTCG---T---------------GATCCAACAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----CGGCAGCTGGG----------CACTAAA--A-----------------------------------------TC----------------------------------------------ATSizeHit CountTotal NormTotal
No Reads
droEug1
-----------------------GTTCG---T---------------GATCCGATAT-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TTT----CGGCATCTGGT----------CA--AAGTTA-----------------------------------------TT-------ATATTTCATAACCGATT-TATT------------------CSizeHit CountTotal NormTotal
No Reads
dm3
TTGGA--TGCTAAACCAACAAGTGTTTG---T---------------GATCCAAGCC-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCG----CGGCAGCGGAT----------CA--AAA--A-----------------------------------------AC----------------------------------------------ATSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................231165783.0016578300009944201181091664182401010603611605451917619748245746586311255633819740106192233306299727042181904227600000000000000000566728392216971422587164946183235822274463439755126159146205542879371792267136290424484076114561020767771101910881474048225943814701652392123400001000207332938646478823444743326123282716000005031221715493945439603303492116876362211509418925137735014260824210483919351634000164193600000462400000270402138478691679371461577639292287400970000308937882354167299532349272329803850466832023252440100264587409060473985712313960432391311053946608148821441791103391329712848396867632585305395138851089541105673243661171317191108277191428796147169253542177741607631344543652803132852271016516757514304837
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................22149902.0049902000089301122131350109301350137130334545501920193817111420812773252256662331272016503801597000000000000000002216151635532613015367201214474318815072717948621522354431167145310923291774568715712217303241742931245908354206523020002100020241932201211312106189106800000239225124932105608591385682332542144499651412226711033701907811660007110120000014130011042714962282581112212518103511400131100177237020311115616131914472974164312948151616706208192572715209013385419158260300105157215278310180432522114411871272159821119135715066133079872532234232271901214912227482613210744524351992055231165468416641384689226268850
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................2117096.007096000038200010100150021000090000212289299105400101001001002212105059400000000000000000274211840021012136717201224351727106820091843123301073890188036197923868444000000000020200000000000000000000060127165066207834912314214011621206110256101000000030000000000000000500021340309100000007801263713011377334925400113010112004023310862991181101422100100205391360103220114116728210711100140106251421737411740
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................2214149.004149000000144200000000000000000366710516223050000000000200100000000000000000000000000001001761867501502207203400203141300001720417720013703034915211400000000005113878200000001000000000000076180305642828113177261192421340000019000200000000000000000000000140000000000100000000144122033100031304120008002012002000100010000000005270102949210974241285200001321021000202300120110004106226151106300
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2412296.00229600002100100100000010100000403000000011000120100021100000118100000000000000000201446319180010015056040110014100343202331001220404290251473800000000001041810021150102000000210900617205200341465112378096300870971013000306100000200000001322732101320203200110003746128210013180425111511130121130132012229142315221818224110625975763514620135035241591590144556411232817501452122006191320
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................2012048.00204800000000000000100400000100021110788643280000000000000000000004110000000000000000001006000000000114007006720640000000010001337650460181633738217839001400000100000000000000000000000000114162066223297109112168116029000101180000000000000000000000000000000001000022000000000003001004202000001100000000000000035000813000009974701000000201000000004000000000006600000011000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................2411450.001450000000000000000000000420002000000000111110300526533410000000000000000000000000014310610000071250101054112111000130116402022911742114000000000021071123620001500000000111170640440017431480360693000003916180001048000009500000021161202123210190000320035014000055000401140010010110020025670305750716739411211112151810174202152210100241029914010100030000510131000400
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................1911363.00136300000000000000100000000000200242411102220001000004230100000000000000000000000010030000000000000001121000000000000000005506043291200100000000001116391520332320101000002061003848022004542460901100000016230100000000000000000000010721130321104000000005998031700011616051200030020210316001010363034124910361470006324541561573111021510013030101011000000001410100101000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................221656.006560000401232000000000000000000000000000000002010001100000000000000000000000000000032000000020015001010000100010020100001860403618031960000000000000000000000000000000110001221010004292191310312000003100000000000000000000000000000000000000000000000000031000324100000011000000000120101937114306218560000135940100027330011100000000000000000500000001100
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................181535.0053500000000000000000000010000002212425300000000000000000000000000000000000000000011000000000000000010001004000000000100500210000002302100210000000000000000000000000000000006046052124247943120000022000000000000000000000000000000000000000000000001000100000000000000000000001000000000000110000025010000000000000000000000000000000000000000001
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................191479.004790000000000000020060000000001971317021000000000000000000000110000000000000000000000000900000024009010102800000000001000110100020612200320000000000000000000000000000000082002111187151041721010006000000000000000000000000000000000000000000000000101500003801110000900000000000000001000000000007573100100200000000000000000000000008110000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................251450.004500000000000000000000000000000000000221100030300023001000000000000000000000000000009000400000100400000012000100002100202000000001022000000000001512033130100000000000000111206002407160700000031300000000100000190000000000000310032013000100000100000001100000101000000000000000263810272826258101000225112200456440100005215100000000000004110000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................231431.00431000000000420001000000000000000000000000000000000000000000000000000000000000000001102500030000010000111800000000100010200202140202000000000000001000010000100000000000017707007717060132000002800000000000000000000000000000000000000000010000340230000250200000200010000001000032201032141801201915143565911005111001101000010000000000110010101100
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................221345.0034500000000000000200000001000100000000000000110000010010000000000000000000000000000200300000004002000000130000000000000024010217030200000000000000000110000000000000000001112010003803060300000030000000010000000000000000200000010001100000000001101840013801110012110010102054100511110376821309101013130310023430411101100101000000000100100201400
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................231337.0033700002000111020000000000000000000000000100000000020000000000000000000000000000110000000001000000001000200100000101010010000100202100000000000000000000000200000010000036050001304045045400000101000000000000000000000000001000000000000000000002000000013000000000001000000000101368316141452021413181931100022320130300000000000000000100000002000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................221302.003020000100000010000000000000000000000000000000000003010000000000000000000000000000000001000000101001000150102000000000000000001000210000000000000000120100000000000010004504000903035133100000160000000000000000000000000000000000000000000000000011000046040110110011010000010001044327592010118172641100020102113300000000000000000000000001100
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................181301.0030100000000000000000000000000100000000020000000011100010000000000000000000000000000000000000000000000000000000000000000210300280102000000000001220000000000000000000011091309000200130003000000411000000000000000000000020010000001000000000000030115100115283510010800010100513201062921009231000895190400000010000100000100000000000200000000001
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................231231.002310000400243030000000000100000000000000000000000000010000000000000000000000000000000000000410000000000030000000010000031030323010410000000000000100000000000000000000001016030071117190130000001700000000010000000000000000000000000000010001000100010000480101000000000000000000003000242001007101051001013000200000312100100000000500000003000
..............................................................................................................................TCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................211217.0021700001000000000000000000000030140030000000000000000000000000000000000000000000000200020000002022010001200000000001001010101120000000000000000120000000000000000000000007043310140578150000070000000000000000000000000000000000000000000000023001000030000000040000010000000000000000001000813718133030000003038000001000000000011700200000000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................211192.00192000000000000000000000000000010000000000000000000000000000000000000000000000000001202112100001102200222745000020004350100002010613013000000000000000000000000000000000010220200230410000000004000000000000000000000000000000000000000000000003600100001400000000000000000000000331000000000011150500000000000000000000100000000100000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.........................................................................................................................................261192.0019200000000000000000000010000000000000103000000010010000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000150000201000200000000000001000001000000000000001010000003000001400000000000001020010700000000000000000000000000000000000000000018239152228910000000012000014201000000218000000000000000010000000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT.........................................................................................................................................................................................211163.0016300000000020000000000000000000134001000000000000000000000100000000000000000001120155532000001017000022500000000131000000000000011000000000000040000000000000000000000061602204413072650000020000000000000000000000000000000000000000000000012000000000000000000000100000000000000000000000121317510000000000000000000000000010100100000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................221142.001420000100000010000010000000000000000000000000000000000100001000000000000000000012010036000000000100100080000000012000000000000000000000000000000000000000000000000000006100100504000200000010010000000000000000000000000000000000000000000022001000020000100000000000000001001272907190000012232300002101111002000000000000000000000003000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................241138.001380000000000010000000000000010000000000000001000000000000000000000000000000000000001010000000000100000050001000000100000010005010430000000000101000000000000000000000001301001603020200001040000000000000000000000000003000000001000000420013001000037100000040000002010000100203010100100343155110000000011100001200000000000500000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTATC.........................................................................................................................................26198.009800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGA..................................................................................................................................................17493.7537500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050300000000000000010000000000000000000000000000010000000000000000000000000000000000000000000010110274004538000071161715300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAA..............................................................................................................................................21179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000010000000000000001000000001005000000000000000000000000000000000000770400280105050000005000000000000000000000000000000000000000000000000000000001301000000000000000000000020000000000020310000020000000000000000000000000100000000000
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20177.0077000000000000000000000000000000470100000010000000000000000000000000000000000000000000000000000000026200000000000110000000000000021000000000000000000000000000000000000240100090401000000001000000000000000000000000000000000000000000000002100000000000000001000000000000000230202010100003061110000000000000000000000000000000000000000
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................18175.0075000000000000000000000000000010420000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000200000000000001000000100000000000000000350400120410020000000000000000000000000000000000000000000000000000003300000000000000000000000000000000451202010010010144700000000000100000000000000000000000000000
droSim2
TTGGATATGCTAAACCAACAAGTGTTCG---T---------------GATCCAAGCC-----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCT----CGGCAGCGGAT----------CG--AAA--A-----------------------------------------AC-------ATATTT----------------------------------CSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................2316948.006948160210460112832914118621119338485400001
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................2211889.00188919962514339734131314131767300000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................2111309.001309291492162872000164300000
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................181646.0064610006957500000000001
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................191288.002881073001316400000100000
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................201240.00240260032818000111000000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................221169.00169100156238000109700000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................24176.007600010061029224400000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................25158.00580011000729162200000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................19147.0047602011000043300000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.........................................................................................................................................26140.0040000000422292100000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................22137.0037200281200020200000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................24126.00260001100000201300000
.........................................................................................................................................................................TATCACAGCCATTTTGA..................................................................................................................................................17426.0010400000012165962000000
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18124.0024700002000141000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21121.0021200140400000100000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTCG.........................................................................................................................................26119.0019000001900000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................22118.0018130000000000500000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................22118.0018100200000006000000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT.........................................................................................................................................................................................21116.001641110700020000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................21114.0014140000000000000000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21111.001100020001100700000
.........................................................................................................................................................................TATCACAGCCATTTTG...................................................................................................................................................1649.2537000000100036000000
..............................................................................................................................TCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................2118.00800020300000300000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAA...........................................................................................................................................................................................1918.00800000800000000000
................................................................................................................................................................................GCCATTTTGATGAGTT............................................................................................................................................1618.00800000000017000000
.............................................................................................................................CTCCTCAAAG-GGTTGTGA............................................................................................................................................................................................1817.00700000700000000000
....................................................................................................................................................TCGACTATT--A-TCTACTCA...................................................................................................................................................................1817.00700500200000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................2315.00510000000000400000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAA..........................................................................................................................................................................................2015.00500000500000000000
.........................................................................................................................................................................TATCACAGCCATTTT....................................................................................................................................................1554.2021000000001119000000
..........................................................................................................................................................................ATCACAGCCATTTTGATG................................................................................................................................................1814.00400000400000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCAA...........................................................................................................................................2414.00400000000004000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGG...............................................................................................................................................2014.00440000000000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................2414.00400020000010100000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGT.......................................................................................................................................................................................2313.00300001000010100000
..............................................................................................................................TCCTCAAAG-GGTTGTGAAAT.........................................................................................................................................................................................2013.00310000100010000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................2213.00320000000100000000
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................1813.00300000000100200000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................2013.00300000300000000000
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................1913.00310001000000100000
..............................................................................................................................TCCTCAAAG-GGTTGTGAA...........................................................................................................................................................................................1813.00300000300000000000
................................................................................................................................................................................................TCGTGCGAA--TCT----CGGCAG....................................................................................................................1813.00300300000000000000
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................2412.00200000100000100000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTA...........................................................................................................................................2012.00200000000101000000
........................................................................................................................................................................ATATCACAGCCATTTTGA..................................................................................................................................................1832.00600000600000000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTTCG.........................................................................................................................................2512.00200000200000000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCA............................................................................................................................................2312.00200000000002000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2312.00200020000000000000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................2012.00200000000000200000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTTAA..........................................................................................................................................2112.00200000000002000000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGTCG.....................................................................................................................................................................................2512.00200001100000000000
................................................................................................................................................................................................TCGTGCGAA--TCT----CGGCAGCG..................................................................................................................2012.00220000000000000000
...................................................CAAGCC-----------------------------------------------------ATAGTTCTTACGTAA...............................................................................................................................................................................................................2111.00100000000000100000
.........................................................................................................................................................................TATCACAGCCATTTTGATGT...............................................................................................................................................2011.00100000000001000000
droSec2
-----------------------GTTCG---T---------------GATCCAAGCC-----------------------------------------------------ATAGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCT----GGTCAGCGGAT----------CG--AAA--A-----------------------------------------AC-------ATATTT----------------------------------CSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23146028.00460286065463350711369
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................2216525.00652543510414434543
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................211597.00597571448478
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................221491.0049117637791
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191290.002900022367
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................241165.00165488172
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................22168.006858082
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21158.005830523
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................24152.0052313612
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................19152.005270045
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18151.005100942
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................23137.003711278
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23135.0035101123
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................24132.0032011813
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................20131.003140027
..............................................................................................................................TCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................21127.002710818
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21127.002726001
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................22113.00130058
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22112.001210110
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................25111.00112153
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................18110.001000100
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................2016.0066000
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................2015.0050050
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................2214.0040022
.............................................................................................................................CTCCTCAAAG-GGTTGTGTT...........................................................................................................................................................................................1914.0042002
.............................................................................................................................CTCCTCAAAG-GGTTGTGAA...........................................................................................................................................................................................1914.0040040
.................................................................................................................................TCAAAG-GGTTGTGAAATG........................................................................................................................................................................................1814.0041003
.............................................................................................................................CTCCTCAAAG-GGTTGTGA............................................................................................................................................................................................1814.0040013
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAA..........................................................................................................................................................................................2013.0031011
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................2013.0030012
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT.........................................................................................................................................................................................2113.0030030
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................1813.0030012
.........................................................................................................................................................................TATCACAGCCATTTTGAGT................................................................................................................................................1952.20111046
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................2412.0020020
.........................................................................................................................................................................TATCACAGCCATTTTGATGAT..............................................................................................................................................2112.0021001
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA.........................................................................................................................................2612.0020020
.........................................................................................................................................................................TATCACAGCCATTTTGATGT...............................................................................................................................................2012.0020002
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................2412.0020011
..............................................................................................................................TCCTCAAAG-GGTTGTGAAA..........................................................................................................................................................................................1912.0021001
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATA........................................................................................................................................................................................2211.0010010
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................2111.0011000
.............................................................................................................................................................................ACAGCCATTTTGATGAGC.............................................................................................................................................1811.0010001
.........................................................................................................................................................................TATCACAGCCATTTTGATA................................................................................................................................................1921.0020002
..............................................................................................................................TCCTCAAAG-GGTTGTGAAAT.........................................................................................................................................................................................2011.0010001
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC............................................................................................................................................2211.0010001
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGG.............................................................................................................................................2111.0011000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAAA.............................................................................................................................................2211.0011000
.........................................................................................................................................................................TATCACAGCCATTTTGATT................................................................................................................................................1911.0011000
droYak3
-----------------------GTTCG---T---------------GATCCAAGCC-----------------------------------------------------ATAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TCT----CGGCAACTTATTTCATGTATTTC----A--A-----------------------------------------AC-------ATATTT----------------------------------CSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23135057.0035057441354185946623219959093340000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................2214356.0043563943711765416081477771000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................2311380.001380011361351000000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................2211187.001187069602114420000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................241331.003310151303537104100000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................221274.00274011915311000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................211256.0025670343018307040000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................221215.002152020331600000
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191157.0015720358325930000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT.........................................................................................................................................................................................21141.0041203621000000
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18141.004110011101900000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................21137.0037032500000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................24135.00350015631010000
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20132.0032012820100000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................24131.0031001651810000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21130.0030041461500000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................23127.0027002212200000
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................19126.0026146301200000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAA..........................................................................................................................................................................................20116.0016011100400000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................23113.0013001010200000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC............................................................................................................................................22113.0013001300000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................20110.001044101000000
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................1819.00900620100000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC............................................................................................................................................2318.00800800000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................2418.00801302200000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................2218.00830011300000
..............................................................................................................................TCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................2117.00702220100000
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................2017.00702203000000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGT.......................................................................................................................................................................................2316.00600600000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAC..............................................................................................................................................2116.00640200000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................2214.00400110200000
............................................................................................................................................................................CACAGCCATTTTGATGAGTC............................................................................................................................................2014.00400400000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAA..............................................................................................................................................2114.00420001100000
....................................................................................................................................................TCGCCTATT--A-TCTACTCA...................................................................................................................................................................1813.00310200000000
................................................................................................................................................................................................TCGTGCGAA--TCT----CGGCAACT..................................................................................................................2013.00330000000000
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2313.00302100000000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT..........................................................................................................................................2513.00301100100000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAA...........................................................................................................................................................................................1912.00200100100000
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGA.......................................................................................................................................................................................2312.00200200000000
droEre2
-----------------------GTTCG---T---------------GATCCAAGAC-----------------------------------------------------ACAATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTT----AAAAAGCGGGT----------TAAG-AA--A-----------------------------------------AC-------ATATTTC--------------------------------A-SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT............................................................................................................................................23143373.0043373224714749423340366811738839
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGT.............................................................................................................................................22114339.001433913171875135055514290991
.........................................................................................................................................................................TATCACAGCCATTTTGATGAG..............................................................................................................................................2111143.00114312846721988700
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC............................................................................................................................................231778.0077855728201910
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT...........................................................................................................................................241394.0039426177479131220
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT............................................................................................................................................221273.0027316492410120
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGC.............................................................................................................................................221235.002350210600190
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................221189.0018915976912770
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA............................................................................................................................................231164.00164012011600
.............................................................................................................................................................................ACAGCCATTTTGATGAGTT............................................................................................................................................191148.001481247443510
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGT.............................................................................................................................................211101.00101861200030
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG............................................................................................................................................23195.0095213020780
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC...........................................................................................................................................24193.0093541652340
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA...........................................................................................................................................24185.008514231305300
.........................................................................................................................................................................TATCACAGCCATTTTGATG................................................................................................................................................19154.005465000421
.........................................................................................................................................................................TATCACAGCCATTTTGATGA...............................................................................................................................................20152.0052153500290
.............................................................................................................................................................................ACAGCCATTTTGATGAGT.............................................................................................................................................18149.0049101070310
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG...........................................................................................................................................24146.004671400340
...........................................................................................................................................................................TCACAGCCATTTTGATGAGTT............................................................................................................................................21145.0045517230180
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGA.............................................................................................................................................22129.002931301210
............................................................................................................................................................................CACAGCCATTTTGATGAGTT............................................................................................................................................20126.002619210130
............................................................................................................................................................................CACAGCCATTTTGATGAGT.............................................................................................................................................19112.001210010100
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA..........................................................................................................................................25111.00110040070
..........................................................................................................................................................................ATCACAGCCATTTTGATGAG..............................................................................................................................................20111.001110010000
.........................................................................................................................................................................TATCACAGCCATTTTGAT.................................................................................................................................................18110.00100001090
..............................................................................................................................................................................CAGCCATTTTGATGAGTT............................................................................................................................................18110.00100013060
...........................................................................................................................................................................TCACAGCCATTTTGATGAGT.............................................................................................................................................2018.0081100060
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAATT........................................................................................................................................................................................2216.0060004020
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC............................................................................................................................................2315.0050400010
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAA..........................................................................................................................................................................................2015.0050010040
.........................................................................................................................................................................TATCACAGCCATTTTGATGAGG.............................................................................................................................................2215.0050011120
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT...........................................................................................................................................2314.0041100020
..............................................................................................................................TCCTCAAAG-GGTTGTGAAATG........................................................................................................................................................................................2114.0041001020
..........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC............................................................................................................................................2214.0040400000
............................................................................................................................................................................CACAGCCATTTTGATGAG..............................................................................................................................................1814.0040000040
.........................................................................................................................................................................TATCACAGCCATTTTGATGAA..............................................................................................................................................2113.0030100020
........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT............................................................................................................................................2413.0031101000
.........................................................................................................................................................................TATCACAGCCATTTTGATGAT..............................................................................................................................................2113.0030001020
.............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT.........................................................................................................................................................................................2113.0030011010
.........................................................................................................................................................................TATCACAGCCATTTTGAGT................................................................................................................................................1972.001410002110

Generated: 10/20/2015 at 10:14 PM