ID:

dps-mir-137

 Coordinate:

3:16385895-16386005 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.0 -28.5 -28.4

Flybase annnotation

utr3 [utr3_minus_3253]

No Repeatable elements found

Sense Strand Reads

TAGTTATGTCCAAAGTGGATTAAGATGACAGCGACGGCCAAGGCAATGCCGACGGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGATATCCGAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAACTGAAACGGAAAGTGTCTGTGAAAGGTGTCCTTAAAGTGAAAGCTTTC

*************************************************************(((((((....(((.((((((((.((((.(((.(((((.((.....))...))))).))))))).)))))))).)))....)))))))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 M059

embryo

 GSM444067

head

 GSM343916

embryo

 SRR902012

CNS imaginal disc

 M062

head

 V112

male body		 SRR902010

ovaries

 SRR902011

testis

 M022

male body
..................................................................................................................TATTGCTTGAGAATACACGTAG........................................................................... 22 0 1 4840.00 4840 1578 826 767 437 527 353 340 7 4 1
..................................................................................................................TATTGCTTGAGAATACACGTA............................................................................ 21 0 1 267.00 267 48 11 125 14 1 21 47 0 0 0
............................................................................ACGTGTATACTCATAGCTATAAC................................................................................................................ 23 0 1 204.00 204 7 96 5 82 0 14 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAG........................................................................... 21 0 1 111.00 111 82 10 5 2 5 5 2 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGT............................................................................. 20 0 1 91.00 91 9 2 60 1 0 7 12 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGT.......................................................................... 23 0 1 77.00 77 13 14 16 11 0 9 14 0 0 0
..................................................................................................................TGTTGCTTGAGAATACACGTAG........................................................................... 22 1 1 71.00 71 0 51 0 0 0 19 1 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAGT.......................................................................... 22 0 1 60.00 60 17 17 14 5 2 4 1 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTA............................................................................ 20 0 1 42.00 42 17 0 14 0 0 5 6 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAC........................................................................... 22 1 1 32.00 32 2 24 1 0 0 5 0 0 0 0
.................................................................................................................CTATTGCTTGAGAATACACGTAG........................................................................... 23 1 1 25.00 25 3 11 0 4 0 7 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGA.......................................................................... 23 1 1 23.00 23 3 2 2 2 7 7 0 0 0 0
..................................................................................................................TACTGCTTGAGAATACACGTAG........................................................................... 22 1 1 22.00 22 0 15 0 0 1 6 0 0 0 0
..................................................................................................................TATCGCTTGAGAATACACGTAG........................................................................... 22 1 1 17.00 17 0 9 0 0 1 6 1 0 0 0
...........................................................................CACGTGTATACTCATAGCTATAA................................................................................................................. 23 0 1 16.00 16 2 0 2 8 0 1 3 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGTAG........................................................................... 23 0 1 13.00 13 5 3 0 0 4 1 0 0 0 0
..................................................................................................................TATTGCTTGAGACTACACGTAG........................................................................... 22 1 1 11.00 11 0 3 0 2 0 5 1 0 0 0
....................................................................................................................TTGCTTGAGAATACACGTAG........................................................................... 20 0 1 11.00 11 3 3 2 0 1 1 1 0 0 0
..................................................................................................................TATGGCTTGAGAATACACGTAG........................................................................... 22 1 1 11.00 11 0 9 0 1 0 1 0 0 0 0
..................................................................................................................TTTTGCTTGAGAATACACGTAG........................................................................... 22 1 1 11.00 11 0 9 0 0 0 2 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGCAG........................................................................... 22 1 1 11.00 11 0 2 8 1 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGT............................................................................. 19 0 1 10.00 10 1 0 7 0 0 1 1 0 0 0
............................................................................ACGTGTATACTCATAGCTATA.................................................................................................................. 21 0 1 10.00 10 1 1 2 3 0 1 0 0 2 0
..................................................................................................................TATTGCTTGAGAATACACGTAGC.......................................................................... 23 1 1 9.00 9 0 3 2 2 0 2 0 0 0 0
...........................................................................CACGTGTATACTCATAGCTATA.................................................................................................................. 22 0 1 9.00 9 2 1 0 4 0 2 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTGG........................................................................... 22 1 1 8.00 8 6 0 1 0 0 1 0 0 0 0
............................................................................AGGTGTATACTCATAGCTATAAC................................................................................................................ 23 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAGC.......................................................................... 22 1 1 7.00 7 0 6 0 0 0 1 0 0 0 0
..................................................................................................................TATAGCTTGAGAATACACGTAG........................................................................... 22 1 1 7.00 7 0 3 0 1 0 3 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACG.............................................................................. 19 0 1 7.00 7 1 2 3 0 0 0 0 0 0 1
............................................................................ACGTGTATACTCATAGCTATAA................................................................................................................. 22 0 1 7.00 7 2 0 1 4 0 0 0 0 0 0
..................................................................................................................TATTGCTTTAGAATACACGTAG........................................................................... 22 1 1 6.00 6 2 0 2 1 0 0 1 0 0 0
..................................................................................................................TAGTGCTTGAGAATACACGTAG........................................................................... 22 1 1 6.00 6 0 0 5 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAT........................................................................... 22 1 1 6.00 6 1 0 3 0 0 0 2 0 0 0
..................................................................................................................TATTGCTTGAGAATACGCGTAG........................................................................... 22 1 1 5.00 5 1 1 2 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAA........................................................................... 22 1 1 5.00 5 3 1 0 1 0 0 0 0 0 0
............................................................................ACCTGTATACTCATAGCTATAAC................................................................................................................ 23 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACCCGTAG........................................................................... 22 1 1 5.00 5 0 0 3 1 0 0 1 0 0 0
..................................................................................................................TATTGCTTGAGGATACACGTAG........................................................................... 22 1 1 5.00 5 1 0 3 0 0 1 0 0 0 0
................................................................................................................TCTATTGCTTGAGAATACACGTAG........................................................................... 24 2 1 5.00 5 0 2 0 0 0 3 0 0 0 0
..................................................................................................................TATTGATTGAGAATACACGTAG........................................................................... 22 1 1 4.00 4 0 0 0 4 0 0 0 0 0 0
....................................................................................................................TTGCTTGAGAATACACGTAGT.......................................................................... 21 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0
....................................................................................................................TTGCTTGAGAATACACGTAGTT......................................................................... 22 0 1 4.00 4 0 0 1 1 0 0 2 0 0 0
......................................................................................................................GCTTGAGAATACACGTAG........................................................................... 18 0 1 4.00 4 3 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATCCACGTAG........................................................................... 22 1 1 4.00 4 0 1 0 0 0 2 1 0 0 0
..................................................................................................................TATTGCTTGAAAATACACGTAG........................................................................... 22 1 1 4.00 4 2 1 0 0 1 0 0 0 0 0
.................................................................................................................CGATTGCTTGAGAATACACGTAG........................................................................... 23 2 1 4.00 4 0 3 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACATGTAG........................................................................... 22 1 1 4.00 4 0 0 1 1 1 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTCG........................................................................... 22 1 1 4.00 4 0 0 2 2 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGGAG........................................................................... 22 1 1 3.00 3 0 0 0 2 1 0 0 0 0 0
..................................................................................................................TATTGCTTGGGAATACACGTAG........................................................................... 22 1 1 3.00 3 1 2 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAGA.......................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGTGAATACACGTAG........................................................................... 22 1 1 3.00 3 0 0 0 3 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAGTACACGTAG........................................................................... 22 1 1 3.00 3 2 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATATACGTAG........................................................................... 22 1 1 3.00 3 0 0 0 0 1 1 1 0 0 0
...................................................................................................................AGTGCTTGAGAATACACGTAGT.......................................................................... 22 1 1 3.00 3 0 1 0 0 0 2 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGT............................................................................. 21 0 1 3.00 3 0 0 2 0 0 1 0 0 0 0
..................................................................................................................CATTGCTTGAGAATACACGTAG........................................................................... 22 1 1 3.00 3 1 1 0 0 0 0 0 0 0 1
.................................................................................................................ATATTGCTTGAGAATACACGTAG........................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTGGT.......................................................................... 22 1 1 3.00 3 0 0 2 0 0 1 0 0 0 0
...........................................................................CACGTGTATACTCATAGCTATAAC................................................................................................................ 24 0 1 3.00 3 0 2 0 0 0 1 0 0 0 0
............................................................................ACGGGTATACTCATAGCTATAAC................................................................................................................ 23 1 1 3.00 3 0 2 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGCA............................................................................ 21 1 1 3.00 3 0 0 2 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACAAGTAG........................................................................... 22 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATGCACGTAG........................................................................... 22 1 1 3.00 3 0 0 2 0 0 0 1 0 0 0
............................................................................ACGTGTATGCTCGTAGCTATAAC................................................................................................................ 23 2 1 2.00 2 0 1 0 1 0 0 0 0 0 0
..................................................................................................................AATTGCTTGAGAATACACGTAG........................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................................CTATTGCTTGAGAATACACGTA............................................................................ 22 1 1 2.00 2 0 1 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGCGAATACACGTAG........................................................................... 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAACACACGTAG........................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...........................................................................CACGTGTATACTCATAGCTAT................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGATTACACGTAG........................................................................... 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0
............................................................................ACGTGTATACTCATAGCTATTAC................................................................................................................ 23 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0
..................................................................................................................TATTGGTTGAGAATACACGTAG........................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGCAG........................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0
............................................................................ACGTGTATACTCATAGCTATAACA............................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACTTAG........................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGAAG........................................................................... 22 1 1 2.00 2 0 1 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTTG........................................................................... 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGGATACACGGAG........................................................................... 22 2 1 2.00 2 0 0 1 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTT............................................................................ 21 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0
.....................................................................................................................TGCTTGAGAATACACGTAG........................................................................... 19 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACATAG........................................................................... 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0
..................................................................................................................GATTGCTTGAGAATACACGTAG........................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................TGTTGCTTGAGAATACACGT............................................................................. 20 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0
..................................................................................................................TATTCCTTGAGAATACACGTAG........................................................................... 22 1 1 2.00 2 0 1 0 0 0 1 0 0 0 0
...................................................................................................................ATCGCTTGAGAATACACGTAG........................................................................... 21 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGTT......................................................................... 24 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0
............................................................................ACGTGTATACTCCTAGCTATAAC................................................................................................................ 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
..................................................................................................................TATTTCTTGAGAATACACGTAG........................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGCATACACGTAG........................................................................... 22 1 1 2.00 2 0 0 1 1 0 0 0 0 0 0
...............................................................................................................ATCTATTGCTTGAGAATACACGTAG........................................................................... 25 3 1 2.00 2 0 0 0 0 0 2 0 0 0 0
..................................................................................................................TATTGCTTGAGAATAAACGTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................CATTGCTTGAGAATACCCGTAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................CCTATTGCTTGAGAATACACGTAG........................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TTGTTTGAGAATACACGTAGG.......................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTACTTGAGAATACACGTG............................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TGTTGCTCGAGAATACACGTAG........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGACCACACGTAGT.......................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATCGCTTGAGAATACACGGA............................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACGCTTAGC.......................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................GATTTATTGCTTGAGAATACACGTAG........................................................................... 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................................CTTATTGCTTGAGAATACACGTAG........................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATGGCTTGTGAATACACGTAGT.......................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGATTACACGTAA........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACG.............................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGTGAATACACGTTG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGTGAATACAAGGAG........................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTCAGAATACACGTAG........................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................TTGCTTGAGAATACACGTAGC.......................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATTCACGTA............................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGGTT........................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTTAGAATACACGTAGC.......................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TTTTGCATGAGAATACACGTAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATCCACGGAG........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTCAGCATACACGTAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TAATGCTTGAGAATACACGTAG........................................................................... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................ACGTGTATACTCATAGTTATAAC................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................TGTTGCTTGAGACTACACGTA............................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGCATACACGTAGT.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATAAACGTAG........................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGACTACACGTAC........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTAAGAATACACGTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGGGAATACACGCAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTGGAGAATAAACGTAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................TTGCTTGAGAATACACGTA............................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTACTTGCGAATACACGTAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................................................................ATGTGTATACTCATAGCTATAAC................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................GATTGCTTGAGAATACCCGTA............................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGACAATACACGTAG........................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGATTGAGAATACTCGTAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................TTTATTGCTTGAGAATACACGTAG........................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................AGTTCTTGAGAATACACGTAG........................................................................... 21 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGATTGCGAATACACGTCG........................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................ATTGCGTGAGAATACACGTA............................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TTGTGGTTGAGAATACACGTAG........................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGCGAATACACGTAGT.......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................ACGTGTATACTCATAGCCATAAC................................................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TGTTGCTTGAAAATACACGTAG........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGTGAATACACGTAGC.......................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTGGAGAATACACGTAG........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCCTGAGAATACACGCAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAGTA......................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................GTATTGCTTGAGAATACACGTAG........................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................ACGGGTTTACTCATAACTATAAC................................................................................................................ 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACATAC........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................CGCGTGTATACTCATTGCTATG.................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................ATTGATTGAGAATACACGTAGT.......................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................ATTGCGTGAGAATACACGTAGC.......................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTACA.......................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCGTGAGAATACACGTAC........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGCGAATACACTTAT........................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCCTGAGAATACACGTAG........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................ACGTGTATACTCATAGCTAT................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TAGTGCTTGAGAATACACGT............................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................ACTATTGCTTGAGAATACACGTAG........................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAAGACACGTAGC.......................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TCTTGCTTGAGAATATACGCAGT.......................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGTGATTACACGTAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................TTGCTTGAGAATACACGTAGTA......................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................ACGTGTATACTCATAGCTA.................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TACTGCTTGAGAATACACGT............................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................AGTGCTTGAGAATACACGTAG........................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAA........................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGTGAATACACGTAGT.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACAAA............................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGTGAATACGCGTAGT.......................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGACTCCACGTAG........................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................ACGTGTATGCTCGTCGCTATAAC................................................................................................................ 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................CAAGTGTATACTCATAGCTATAAC................................................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATGCACGTAGT.......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTTGT.......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................TACGTGTATACTCATAGCTATAA................................................................................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGGATACACG.............................................................................. 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................CATTGCTTGAGAATACACGTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACGCGTAGT.......................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGGATGCACGTAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATAAACGTGGC.......................................................................... 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATCCACGTAC........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................ATGCGTATACTCATAGCTATAACC............................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGTTTGAGAATACACGGAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................AGTGCTTGAGAATACACGTA............................................................................ 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCGTGAGAATACACGTAG........................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCGTGAGAGTACACGTA............................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................CATTGCTTGAGAATACACGTAGT.......................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................GATTGCTTGAGAATACACGCAT........................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATAAACGTAGC.......................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTCAGACTACACGTA............................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TGTTGCGTGAGAATACACGTAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACTCGTAG........................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................CACGTGTATAATCATAGATATAA................................................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGCGTATTCACGTAGT.......................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TGTCGCTTGAGAATACACGTAG........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................ACATGTATACTCATAGCTATAAC................................................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TAATGCTTGAGAATACACGGAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TACTGCTTGAGAATACACGTAC........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................ACGGGTATACTCATAGATATAAC................................................................................................................ 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GGGCTATTGCTTGAGAATACACGTAG........................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................ACGTGGATACTCATAGCTATAAC................................................................................................................ 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TGTTGCTTGAGAATACACGTAGC.......................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................GATCCACGTGTATACTCATAGCTATA.................................................................................................................. 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATATACGT............................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................ATTTCTTGAGAATACACGTAGT.......................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTCGAGAATACACGTAC........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TAGTGCGTGAGAATACACGTAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGATTGAGAATACACGTACT.......................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGGTTGAGAATACACGTAC........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACATGTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACGCCTAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TAGTGCGTGAGAATGCACGTA............................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGGATACACGTA............................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TACTGCTTGAGAATACACGTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATGGCTTGAGAATAAACGTAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................CTATTGCTTGAGAATACACGTAGA.......................................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAGTT......................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TGTTGCTTGAGAATACACGTGG........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATCCACTTAG........................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAACATACACGTAG........................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGGGAATACACGTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................ATCTCTTGAGAATACACGTAGT.......................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGTATACACTGAG........................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGGAGA.......................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................AGTGCTTGAGAATACACGTAGC.......................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGCT............................................................................ 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACCTAG........................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TACTGCTTGAGACTACACGTA............................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................CCTTATTGCTTGAGAATACACGTAG........................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTAGAGAATACACGTAG........................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACATGTAGT.......................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................CTATTGCTTGAGAATACACGTAC........................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................TACTGCTTAAGAATACACGTAG........................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTT............................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............................................................................ACGTGTATACTCATAGCTAAAAC................................................................................................................ 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TAGTGCTTGAGAATACACGTA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................TCTATTGCTTGAGAATACACGTA............................................................................ 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TGTTGCTTGAGGATACACGGAG........................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGC............................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGACTACTCGTAG........................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................TGTTATTGCTTGAGAATACACGTAG........................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAGTACACG.............................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................ACGTTTATACTCATCGCTATAAC................................................................................................................ 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACGCGTAGT.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TCTTGCTTGAGAATACCCGTAT........................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTTAGAATACCCG.............................................................................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................GATGGCTTGAGAATACCCGTA............................................................................ 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATGGGTTGAGAATACACGTAT........................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGCAGACACGGAG........................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGGTTGGGAATACACGTTG........................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTTAGCGTACACGTAG........................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................AATTGTTTGATAATACACGTAG........................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATCCACATAT........................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
............................................................................ACGTGTCTTCTCATAACTATA.................................................................................................................. 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGCTTACACGTG............................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............................CGACTGCCAAGGCTATGACG................................................................................................................................................................ 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................GAGTGCTTGAGAGTACACGTA............................................................................ 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................TATTCTTGAGAATACACGTAG........................................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................TATCTTGAGAATCCACGTAG........................................................................... 20 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................AATGTTATACCTTGAGCATA.................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
............................................................................................................................GAATACACGGCGTTTAAT..................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ATCAATACAGGTTTCACCTAATTCTACTGTCGCTGCCGGTTCCGTTACGGCTGCCGCTGATCTTAGAAGTTGCCGGTGCACATATGAGTATCGATATTGGACTATAGGCTTACAATAACGAACTCTTATGTGCATCAAATTGTTCTAAGCAAGTCGTTAGTTTGACTTTGCCTTTCACAGACACTTTCCACAGGAATTTCACTTTCGAAAG

************************************************************(((((((....(((.((((((((.((((.(((.(((((.((.....))...))))).))))))).)))))))).)))....)))))))..************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 V112

male body		 M022

male body		 GSM343916

embryo
..................................................................................................................................TGCCTCAAAGTGTTCTAA............................................................... 18 2 4 3.25 13 8 2 1 2
..................................................................................................................................TGCCTCAAAGTGTTCTAAT.............................................................. 19 3 16 1.88 30 30 0 0 0
........................................................................................................................................................................................TGTCGACAGGAATTTCACTTT...... 21 2 1 1.00 1 0 1 0 0
...........................................................................................................................................................................................GAACAGGAATTTCACTTT...... 18 2 10 0.60 6 0 0 6 0
.........................................................................................................AGGCTCACAGTAACGGACTCT..................................................................................... 21 3 3 0.33 1 1 0 0 0
.............................................................................................................................................................................................ACAGGAATTTCACTTTTC.... 18 2 7 0.14 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 3:16385845-16386055 - dps-mir-137 Known_mirbase TAGTTAT--G-----TCC-AAAGT--------------GGATTAAGATGACAGCGA--CGGCC-----A-AG------GCAATGCCGACGGCGACTAGAATCT-TCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-CTGAA--ACGGAAAGTGTCTGTGAAAGGTGTCCTTAAAGTGAAAGCTTTC---
droPer2 scaffold_4:376909-377124 + dpe_44 confident TAGTTAC--G-----TCC-AAAGT--------------GGATTAAGATGACAGCGA--CGGCCACGCCA-CG------GCAATGCCGACGGCGACTAGAATCT-TCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-CTGAA--ATGGAAAGTGTCTGTGAAAGGTGTCCTTAAAGTGAAAGCTTTC---
droWil2 scf2_1100000004954:1110984-1111103 - dwi_38 confident A---------------------------------------------------------------------------------------------CAAGAATCTTTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTAA-CTAGATTCGTTCAACGGGTCAAACAACA--AAAAAAA---------------------------------------
droVir3 scaffold_10468:1947-2131 - dvi-mir-137 Known_mirbase TATATTT--T-----TAT-AAAGTGAAGCAG-------GGATTAAGGTA-CGTCGGAGCAGACACGACAGCGGACACAACAAT-----TGGAAATTGGAATCT-GAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTCTCTCAACGATCCAA-TAAAA--AC--------------------------------------------
droMoj3 scaffold_6496:10610011-10610156 + dmo_25 confident TGATTATATT-----TAT-GAAGTGGTCAACGGAGTGTGGACACAATTGGAAA-----------------------------------------TTGGAATCG-GCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-GCCAGATTCGCCCAACA------------------------------------------------------------
droGri2 scaffold_15245:16918490-16918590 - dgr_35 candidate-rescued ----------------------------------------ATT-----------------------------------------------------AAAATCT-GAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTGCCTCAACGA-----------------------------------------------------------
droAna3 scaffold_13266:15447204-15447344 + dan_23 confident TGGTTAT--G-----TGG-CAAGT--------------GGATTAAAGTGGCAAC----------------------------------------CTGGAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAA-GTG--------------------------------------------------
droBip1 scf7180000396547:1600286-1600445 - TGGTTAT--G-----TGC-CAAGT--------------GGATTAAAGTGGCAAT----------------------------------------CTGAAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATCGAAAGGAAA--ATGGAAAAGGACGATGA-----------------------------
droKik1 scf7180000302476:2644143-2644308 - CATTTGT--C-----CCC-C------------------GGACTAT--------AA-----------------------------------------GCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATCCAAACGGAA--ATCGAAAGTGT-------AGAAGCCGTTAAAATCACGACTAT----
droFic1 scf7180000453948:1198618-1198758 - TATCCCG--GCTATTCGC-AGCGA--------------GGATTACAGTGGCAGAA-----------------------------------------GCTATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAG-C----------------------------------------------------
droEle1 scf7180000491107:959925-960065 - TACTCAT--GC----CGCACAAGT--------------GGATTAAAGTGGCGACG-----------------------------------------GCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAA-CGGA-------------------------------------------------
droRho1 scf7180000779911:146886-147021 + TACTTAT--G-----CGC-CAAGT--------------GGATTAAAGTGGCGACG-----------------------------------------GCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATGAAA-C----------------------------------------------------
droBia1 scf7180000301506:2893872-2894017 - CAGTTAT--G-----TGC-CAAGT--------------GGATTAAAGTGGCCAT-----------------------------CTCAACCGCAGC-CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATTAAA------------------------------------------------------
droTak1 scf7180000415795:609464-609644 + CAGTTAT--G-----CGG-CAAGT--------------GGATCAACGTGGCGACG-----------------------------------GCCACCTCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA-CGGAGCCACAAAACGGGGCGATAAAAACTGCAGTTACAGT-------------
droEug1 scf7180000409672:857321-857478 - CAGTTAA--C-----CGC-CAAGT--------------GGATTAAATGGTCGACG-----------------------------------------GCAATCT-CCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA-CCAAGCCACTGAA------------------------------AGCTATAAAA
dm3 chr2R:11952748-11952883 - dme-mir-137 Known_mirbase CTGTTGT--G-----CTC-CAAGT--------------GGATTACGATGGCGTCG-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAA------------------------------------------------------
droSim2 2r:12622835-12622958 - dsi-mir-137 Known_mirbase --------------------AAGT--------------GGATTACGATGGCGTCG-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA------------------------------------------------------
droSec2 scaffold_1:9448876-9448999 - dse_23 confident --------------------AAGT--------------GGATTACGATGGCGTCG-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA------------------------------------------------------
droYak3 2R:17032222-17032321 + dya_26 confident --------------------------------------------------------------------------------------------------AATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAA------------------------------------------------------
droEre2 scaffold_4845:13905042-13905163 + der_26 confident ---------------------AGT--------------GGATTACGGTGGCGACT-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
TAGTTAT--G-----TCC-AAAGT--------------GGATTAAGATGACAGCGA--CGGCC-----A-AG------GCAATGCCGACGGCGACTAGAATCT-TCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-CTGAA--ACGGAAAGTGTCTGTGAAAGGTGTCCTTAAAGTGAAAGCTTTC---SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2214840.0048401157882635343776734074527
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211267.0026704811211412547001
.................................................................................................................ACGTGTATACTCATAGCTATAAC.........................................................................................................................231204.002040796148250000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................211111.00111082105252005
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................20191.0091092716012000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................23177.0077013149111614000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................22160.00600171745141002
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................20142.0042017050146000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................22132.003202245010000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23123.00230327220007
................................................................................................................CACGTGTATACTCATAGCTATAA..........................................................................................................................23116.00160201823000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................23113.00130531000004
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................20111.00110331021001
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................19110.00100101071000
.................................................................................................................ACGTGTATACTCATAGCTATA...........................................................................................................................21110.00100111320020
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................2319.0090032220000
................................................................................................................CACGTGTATACTCATAGCTATA...........................................................................................................................2219.0090212400000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGC................................................................................2217.0070061000000
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................1917.0071120030000
.................................................................................................................ACGTGTATACTCATAGCTATAA..........................................................................................................................2217.0070200410000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................2216.0060100032000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................2215.0050310100000
............................................................................................................................................................TTGCTTGAGAATACACGTAGT................................................................................2114.0040300010000
............................................................................................................................................................TTGCTTGAGAATACACGTAGTT...............................................................................2214.0040000112000
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1814.0040300100000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGA................................................................................2213.0030300000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2113.0030001020000
................................................................................................................CACGTGTATACTCATAGCTATAAC.........................................................................................................................2413.0030021000000
................................................................................................................CACGTGTATACTCATAGCTAT............................................................................................................................2112.0020200000000
.................................................................................................................ACGTGTATACTCATAGCTATAACA........................................................................................................................2412.0020020000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................2112.0020000002000
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1912.0020101000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTT...............................................................................2412.0020000002000
...........................................................................................................................................................ATTGCTTGAGAATACACG....................................................................................1811.0010100000000
............................................................................................................................................................TTGCTTGAGAATACACGTAGC................................................................................2111.0010001000000
............................................................................................................................................................TTGCTTGAGAATACACGTA..................................................................................1911.0010100000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGTA...............................................................................2311.0010000001000
..........................................................................................................................................................TATTGCTTGAGAATACACGTACA................................................................................2311.0010000010000
.................................................................................................................ACGTGTATACTCATAGCTAT............................................................................................................................2011.0010000010000
............................................................................................................................................................TTGCTTGAGAATACACGTAGTA...............................................................................2211.0010000010000
.................................................................................................................ACGTGTATACTCATAGCTA.............................................................................................................................1911.0010000100000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAA.................................................................................2111.0010100000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGTT...............................................................................2311.0010000010000
..........................................................................................................................................................TATTGCTTGAGAATACACGCT..................................................................................2111.0010000010000
...........................................................................................................................................................ATTGCTTGAGAATACACGTT..................................................................................2011.0010000001000
..........................................................................................................................................................TATTGCTTGAGAATACACGC...................................................................................2011.0010001000000
.......................................................................................................................................................TGTTATTGCTTGAGAATACACGTAG.................................................................................2511.0010100000000
droPer2
TAGTTAC--G-----TCC-AAAGT--------------GGATTAAGATGACAGCGA--CGGCCACGCCA-CG------GCAATGCCGACGGCGACTAGAATCT-TCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-CTGAA--ATGGAAAGTGTCTGTGAAAGGTGTCCTTAAAGTGAAAGCTTTC---SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2212043.0020432422089638770302
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211375.0037505214720120
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201163.0016302264887
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................19166.00666200130
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................23153.0053001192211
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................20136.003600016182
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................22121.00210401250
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................19120.00200007130
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21120.0020071480
................................................................................................................CACGTGTATACTCATAGCTATAA..........................................................................................................................23116.0016301570
.................................................................................................................ACGTGTATACTCATAGCTATAAC.........................................................................................................................23116.0016905200
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23114.0014020651
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................2218.008000530
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................2218.008010160
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................2318.008000071
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................2217.007001420
................................................................................................................CACGTGTATACTCATAGCTAT............................................................................................................................2116.006000240
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................2315.005011120
................................................................................................................CACGTGTATACTCATAGCTATA...........................................................................................................................2214.004002110
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................2014.004011020
................................................................................................................CACGTGTATACTCATAGCT..............................................................................................................................1913.003000030
...........................................................................................................................................................ATTGCTTGAGAATACACGTT..................................................................................2013.003000030
............................................................................................................................................................TTGCTTGAGAATACACGTAGTT...............................................................................2213.003000300
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1912.002010001
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGTT...............................................................................2312.002000020
...........................................................................................................................................................ATTGCTTGAGAATACACG....................................................................................1812.002000200
..........................................................................................................................................................TATTGCTTGAGAATACACGTGT.................................................................................2212.002000020
.................................................................................................................ACGTGTATACTCATAGCTATAA..........................................................................................................................2212.002010100
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2112.002000110
............................................................................................................................................................TTGCTTGAGAATACACGTAGT................................................................................2112.002000020
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................2111.001000010
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGG................................................................................2211.001000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTTA.................................................................................2211.001000010
...........................................................................................................................................................ATTGCTTGAGAATACACGCC..................................................................................2011.001000010
.................................................................................................................ACGTGTATACTCATAGCTATA...........................................................................................................................2111.001100000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTT...............................................................................2411.001000010
............................................................................................................................................................TTGCTTGAGAATACACGTAGAA...............................................................................2211.001000010
............................................................................................................................................................TTGCTTGAGAATACACGTAGA................................................................................2111.001000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTG..................................................................................2111.001000100
...........................................................................................................................................................ATTGCTTGAGAATACACGTAA.................................................................................2111.001000100
..........................................................................................................................................................TATTGCTTGAGAATACACGTTT.................................................................................2211.001000010
................................................................................................................CACGTGTATACTCATAGCTATAAT.........................................................................................................................2411.001000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................2111.001000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTATC................................................................................2311.001000010
.........................................................................................................................................................TTATTGCTTGAGAATACACG....................................................................................2011.001000010
............................................................................................................................................................TTGCTTGAGAATACACGT...................................................................................1811.001010000
.................................................................................................................ACGTGTATACTCATAGCT..............................................................................................................................1811.001100000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGGGA..............................................................................2511.001010000
.................................................................................................................ACGTGTATACTCATAGCTAT............................................................................................................................2011.001000100
droWil2
A---------------------------------------------------------------------------------------------CAAGAATCTTTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTAA-CTAGATTCGTTCAACGGGTCAAACAACA--AAAAAAA---------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2214067.00406713843017814041917
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211375.003751222368261
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................191306.003063020004
.................................................................................................................ACGTGTATTCTTATAGCTGTAAC.........................................................................................................................231135.001359911286
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201109.0010921416572
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................23149.0049125329
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21132.0032024017
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23119.001912484
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................23115.0015020211
.................................................................................................................ACGTGTATTCTTATAGCTGTA...........................................................................................................................21114.0014120011
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................22112.001212009
.................................................................................................................ACGTGTATTCTTATAGCTGTAA..........................................................................................................................2219.00970011
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................2217.00701123
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................2016.00602004
.................................................................................................................ACGTGTATTCTTATAGCTGT............................................................................................................................2015.00550000
.................................................................................................................ACGTGTATTCTTATAGCTG.............................................................................................................................1914.00440000
..........................................................................................................................................................TATTGCTTGAGAATACACGTG..................................................................................2114.00400103
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................2214.00400013
............................................................................................................................................................TTGCTTGAGAATACACGTAGTT...............................................................................2213.00300003
.........................................................................................................................................................TTATTGCTTGAGAATACACG....................................................................................2013.00330000
.................................................................................................................ACGTGTATTCTTATAGCTGTAACC........................................................................................................................2413.00330000
............................................................................................................................................................TTGCTTGAGAATACACGTAGTTT..............................................................................2312.00200011
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1912.00200011
..........................................................................................................................................................TATTGCTTGAGAATACACGG...................................................................................2012.00220000
................................................................................................................CACGTGTATTCTTATAGCTGTAA..........................................................................................................................2312.00220000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................2212.00200011
...........................................................................................................................TTATAGCTGTAACCTGTT--AT................................................................................................................2011.00110000
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................2011.00100010
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................2111.00100010
............................................................................................................................................................TTGCTTGAGAATACACGTAGT................................................................................2111.00101000
.................................................................................................................ACGTGTATTCTTATAGCTGTAACCT.......................................................................................................................2511.00110000
..........................................................................................................................................................TATTGCTTGAGAATACAC.....................................................................................1811.00100010
.................................................................................................................ACGTGTATTCTTATAGCTGC............................................................................................................................2011.00110000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAA...............................................................................2411.00100010
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGA................................................................................2211.00101000
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................2111.00100001
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................2311.00100001
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2111.00100001
..........................................................................................................................................................TATTGCTTGAGAATACACGTGT.................................................................................2211.00100001
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1811.00100010
.............................................................................................................................................................TGCTTGAGAATACACGTAGG................................................................................2011.00101000
..........................................................................................................................................................TATTGCTTGAGAATACACGTCC.................................................................................2211.00100010
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................2211.00100010
............................................................................................................................................................TTGCTTGAGAATACACGTA..................................................................................1911.00100001
..........................................................................................................................................................TATTGCTTGAGAATACACTAG..................................................................................2150.20100001
droVir3
TATATTT--T-----TAT-AAAGTGAAGCAG-------GGATTAAGGTA-CGTCGGAGCAGACACGACAGCGGACACAACAAT-----TGGAAATTGGAATCT-GAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTCTCTCAACGATCCAA-TAAAA--AC--------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2213284.003284357652179112103000017812354134916212601406305235342041060001020133000000000100211552118601353020201680152170418143863
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211867.0086702436010000000069402750522704737000002304020001020100000000000000001113548300200000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201414.004140323003000000002616192033182342011000041000000000000000000000000011001632300000002000000000
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................191126.00126387100000010000010000001000000010000000000000000000000000019051000000014010000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................23182.00823171130000000000603332011000001000000000000000000000000000006515100000000000010000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21179.0079005540000000000211210000000001000000000000000000000000000000111000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................23147.0047004400000000002101330220000001000100000000000000000000000001111100000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................22136.00360000000000000043314303400000001100000000000000000000000000009000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23133.00330225000000000022021000100000020000000000000000000000000000202100000000000002034
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................22120.00200000010000000021021210000000100000000000000000000000000000015300000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATG........................................................................................................38116.00160000000000000000000000000000000000000000000000000000000403900000000000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................22114.00140011000000000010011000100000100100000000000000000000000000005100000000000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................23112.00120020000000000031001101100000000000000000000000000000000000002000000000000000000
................................................................................................................CACGTGTATGCTCGTAGCTATAA..........................................................................................................................23110.00100001000000000032010000200000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................20110.00100060000000000000010100000000000000000000000000000000000000001100000000000000000
................................................................................................................CACGTGTATGCTCGTAGCT..............................................................................................................................19110.00100200000000000000112000000000000000000000000000000000000000004000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................2119.0090001000000000001001021200000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................2218.0080001000000000000011000000000000000000000000000000000000000005000000000000000000
................................................................................................................CACGTGTATGCTCGTAGCTAT............................................................................................................................2117.0070010000000000002001001000000000000000000000000000000000000002000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAA..........................................................................................................................2216.0060000000000000010012000000000000100000000000000000000000000001000000000000000000
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1815.0050021000000000010000000010000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................2115.0050000000000000000100000000000000000000000000000000000000000003100000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGC...................................................................................2015.0050000000000000000000000000000000000000000000000000000000000005000000000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................1914.0040020000000000000000000000000000000000000000000000000000000002000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................2314.0040000000000000000000000000000000000000000000000000000000000013000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTAT............................................................................................................................2014.0040010000000000010000000000000000000000000000000000000000000002000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGT.......................................................................................................3913.0030000000000000000000000000000000000000000000000000000010000200000000000000000000
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................2013.0030010000000000000000000100000000000000000000000000000000000000100000000000000000
................................................................................................................CACGTGTATGCTCGTAGCTATAAA.........................................................................................................................2413.0030100000000000011000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CACGTGTATGCTCGTAGCTATA...........................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000002000000001000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................2113.0030000000000000000101000000000000000000000000000000000000000001000000000000000000
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1912.0020001000000000000100000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTA.............................................................................................................................1912.0020000000000000000000000000000010000000000000000000000000000001000000000000000000
............................................................................................................................................................TTGCTTGAGAATACACGT...................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2112.0020000000000000010010000000000000000000000000000000000000000000000000000000000000
................................................................................................................CACGTGTATGCTCGTAGCC..............................................................................................................................1912.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAACC........................................................................................................................2412.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGG................................................................................2312.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTA...............................................................................2411.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................................................CACGTGTATGCTCGTAGCTATC...........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATC...........................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGG...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCT..............................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGTTTT-............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACC....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGA................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
................................................................................................................CACGTGTATGCTCGTAGCTA.............................................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CACGTGTATGCTCGTAGCTATAC..........................................................................................................................2311.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGC................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTCCC................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTCA.................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................TGCTTGAGAATACACGTA..................................................................................1811.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGCCC.................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTT..................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................CACGTGTATGCTCGTAGCTATAAAAA.......................................................................................................................2611.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGA...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATT...........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAA...............................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TTGCTTGAGAATACACGTAGT................................................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................GCTTGAGAATACACGTAGTATT-............................................................................2230.3310000000000000010000000000000000000000000000000000000000000000000000000000000000
droMoj3
TGATTATATT-----TAT-GAAGTGGTCAACGGAGTGTGGACACAATTGGAAA-----------------------------------------TTGGAATCG-GCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-GCCAGATTCGCCCAACA------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2218045.008045231813480016542187952
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211796.0079670018937818141
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201399.0039942086192970
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................231223.0022352012201633
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................211207.002071390710492
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................231153.0015315421284837
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................22146.004660111838
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23145.0045111410712
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................20132.00321800293
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................22129.00290022241
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................23118.00181012140
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................21115.00150302100
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................19113.0013004621
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................21112.0012202503
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................2219.009202410
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTT...............................................................................2418.008210113
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................2018.008700100
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1917.007500110
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................2315.005400100
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................1915.005202001
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................2215.005200120
.................................................................................................................ACGTGTATGCTCGTAGCTATAA..........................................................................................................................2214.004011200
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1813.003100020
..........................................................................................................................................................TATTGCTTGAGAATACACGC...................................................................................2012.002000110
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGG................................................................................2312.002100010
...........................................................................................................................................................ATTGCTTGAGAATACACGTAT.................................................................................2112.002000020
.................................................................................................................ACGTGTATGCTCGTAGCTAT............................................................................................................................2012.002001100
..........................................................................................................................................................TATTGCTTGAGAATACACGTG..................................................................................2112.002000101
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTC...............................................................................2411.001000001
..........................................................................................................................................................TATTGCTTGAGAATACACGTATA................................................................................2311.001000001
..............................................................................................................................................................GCTTGAGAATACACGTAGT................................................................................1911.001100000
............................................................................................................................................................TTGCTTGAGAATACACGT...................................................................................1811.001000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTCT.................................................................................2211.001000100
................................................................................................................CACGTGTATGCTCGTAGCTATAA..........................................................................................................................2311.001100000
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................2111.001000100
................................................................................................................CACGTGTATGCTCGTAGCTATA...........................................................................................................................2211.001000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTAAA................................................................................2311.001000001
..........................................................................................................................................................TATTGCTTGAGAATACACGTCA.................................................................................2211.001001000
droGri2
----------------------------------------ATT-----------------------------------------------------AAAATCT-GAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTAA-CAAGATTGCCTCAACGA-----------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................221175.0017512946
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................21118.0018612
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................20112.001266
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................2118.00880
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................2313.00321
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................2013.00330
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................2312.00211
..................................................................................................................CGTGTATGCTCGTAGCTATAAC.........................................................................................................................2211.00110
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................2211.00110
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................2311.00110
droAna3
TGGTTAT--G-----TGG-CAAGT--------------GGATTAAAGTGGCAAC----------------------------------------CTGGAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAA-GTG--------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2213316.003316386452406375121289
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211436.00436810211785214
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201198.00198430635078
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................231123.001233163183845
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................23180.008032724242
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21173.0073236014624
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................22142.004210171023
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23131.00316119212
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................19113.0013200227
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................21111.0011000218
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................1919.009020322
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................2318.008040310
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2118.008000332
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................2318.008220103
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................2218.008100214
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................2116.006011103
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................2215.005030101
.................................................................................................................ACGTGTATGCTCGTAGCTATAA..........................................................................................................................2215.005100004
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................2215.005000014
............................................................................................................................................................TTGCTTGAGAATACACGTAGTT...............................................................................2214.004001003
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTT...............................................................................2414.004000220
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................2014.004220000
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................2013.003000012
..........................................................................................................................................................TATTGCTTGAGAATACAC.....................................................................................1813.003010200
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGG................................................................................2313.003100200
...........................................................................................................................................................ATTGCTTGAGAATACACG....................................................................................1812.002000200
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................2112.002000020
..........................................................................................................................................................TATTGCTTGAGAATACACGTTT.................................................................................2212.002000110
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1912.002100010
..........................................................................................................................................................TATTGCTTGAGAATACACGC...................................................................................2012.002000200
..........................................................................................................................................................TATTGCTTGAGAATACACGTTA.................................................................................2211.001100000
.................................................................................................................ACGTGTATGCTCGTAGCTATAAT.........................................................................................................................2311.001000100
..........................................................................................................................................................TATTGCTTGAGAATACACGTG..................................................................................2111.001000001
...........................................................................................................................................................ATTGCTTGAGAATACACGTAT.................................................................................2111.001000001
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGA................................................................................2211.001000100
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAA...............................................................................2411.001000010
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1811.001010000
..................................................................................................................CGTGTATGCTCGTAGCTATA...........................................................................................................................2011.001100000
.................................................................................................................ACGTGTATGCTCGTAGCTATAACT........................................................................................................................2411.001000100
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................2211.001010000
..........................................................................................................................................................TATTGCTTGAGAATACACGCTT.................................................................................2211.001000100
..........................................................................................................................................................TATTGCTTGAGAATACACGG...................................................................................2011.001000100
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGC................................................................................2211.001010000
..........................................................................................................................................................TATTGCTTGAGAATACACGTTC.................................................................................2211.001000100
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAA.................................................................................2311.001010000
droBip1
TGGTTAT--G-----TGC-CAAGT--------------GGATTAAAGTGGCAAT----------------------------------------CTGAAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATCGAAAGGAAA--ATGGAAAAGGACGATGA-----------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CATTTGT--C-----CCC-C------------------GGACTAT--------AA-----------------------------------------GCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATCCAAACGGAA--ATCGAAAGTGT-------AGAAGCCGTTAAAATCACGACTAT----SizeHit CountTotal NormTotal
No Reads
droFic1
TATCCCG--GCTATTCGC-AGCGA--------------GGATTACAGTGGCAGAA-----------------------------------------GCTATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAG-C----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TACTCAT--GC----CGCACAAGT--------------GGATTAAAGTGGCGACG-----------------------------------------GCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAA-CGGA-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TACTTAT--G-----CGC-CAAGT--------------GGATTAAAGTGGCGACG-----------------------------------------GCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATGAAA-C----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGTTAT--G-----TGC-CAAGT--------------GGATTAAAGTGGCCAT-----------------------------CTCAACCGCAGC-CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATTAAA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAGTTAT--G-----CGG-CAAGT--------------GGATCAACGTGGCGACG-----------------------------------GCCACCTCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA-CGGAGCCACAAAACGGGGCGATAAAAACTGCAGTTACAGT-------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGTTAA--C-----CGC-CAAGT--------------GGATTAAATGGTCGACG-----------------------------------------GCAATCT-CCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA-CCAAGCCACTGAA------------------------------AGCTATAAAASizeHit CountTotal NormTotal
No Reads
dm3
CTGTTGT--G-----CTC-CAAGT--------------GGATTACGATGGCGTCG-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAA------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................22147512.004751200002450001303004003500033403121448129614625400001110001210131310046036332700000000000000000122246100300232129434311942137121820396371120245853834602677027273906444175359954801698000020000031200231205820400000010004422532892017769329620105615771810622912724200210753251423300050057000000716000000300227884772717110625937200000005364020804622143042264292153178500936334012010612120619100103171272842415131012135113821413148539204156841019147822913989377593242617254223117441017875442824715796710269108257954353322160
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................2119825.00982500002000000100200200000200017710514320000000000010000000000011200000000000000000000020000000100702222900003110000010000021542319010949267666690000000000000000000050000000000000001902870145128816071137223432040000032073101000708000000020000000000143002100115000100002413014137250036120125221000844000031110201110133201220012250759161568215310765053020226213094170112501863612413087237013935939558203110
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................2012863.00286300000000000000100000010000000229271010000101000000000000003110000000000000000000001000000000000110000006000000010000001620102110131912000000000000000000000100000000100000315502910314223505016514000007202300004020000000100000000003901003200300000000340241210013480131900001138010010000000001101101001100177180177236022811127100174055136000020310100202056762449182725000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................2311019.001019000000000000000000000001000000000000000000000010000100120134200000000000000000000000000000000002001000017000000100010006101010301065000000000000000010005000000000000000181101200516014020016000000221211000104000000010000001001120000001000103000015120110020038011700003260101000000100002000001000113629343256284020100301394901043115201122030301672310252124100220
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................231689.00689000000001300000000000000000000000000000000000100000000000010000000000000000000000005000001030141302003200010001303000300200160100100000000000000000000000000000000000026500260022101003206500000013001000000100000000000000000000010011100200000001916013030069034000030000000100100000000000000200182421330964111010012057020002300101001024411300000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................221470.004700000410002010000000000000000000000000000000000000000000000000000000000000000000030000000001901701010037100000010010005000011201109800000000000000000000000000000000000026390210011381160250280000002200100000000000000000000000000100001000000001000000020000150100000210000000110000000000000000001912211700221000006059000000000000000021610301000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................231389.0038900001000000000000000000001000000000000000000000000000000000000000000000000000000200000000001001110000000000000100000320002120213700000000000000000000000000000000000011110900712170250240000001300000000000000000000000000000100003000200004300110230000630220000440000000001100000000000000002017211409126000000120614000010010001101014143323010000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................211389.00389000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000010000010000000000000006002033301002000000000000000000000000000000000000395402601434220024103500000018000000000000000000000000000000100000000000000003302000000200400000700000000000000000000000000079410010101100003034010000100000000011510220000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................221334.00334000010000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000004000000000000017000000101201412000000000000000000000000000000000000121607003403050900000070100000001000000000000000000012000010002001000030001010046122000031300000000000000000000000000015171690111202000080210000000110011000074740724000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTATC.............................................................................261110.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006149000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................22176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000202500000000000000000000000000000000000010100400000201000000002100000000000000000000000000100000000000000010000000100001100100000300000000000000010000000000032320200010000302001000110000000000310010000000
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................19162.0062000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000001130000000000000000000000000000000000000040200021011102000002000000030100000000000000000000000000000000000001000201000000100000000000010100100000000000000015220000000000010200000000000000000710003000100
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................20159.0059000000000000000000600000000010000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000000000000000000000340200380712100000001100000000000000000000000000002000000000000000005000000000000000000000000000000000000000000000011020100000000001100000000000000000100000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................21153.0053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000004028000000000000000000000000000000000000220000010000010000000000000000000000000000000000000000000000000000000000400000100000001000000000000000000000000000001010010000000901400000000000000000200010000000
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................21150.0050000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000400010100000000000000000000000000000000000000000330000210002020000003000000000000000000000000000000000000000000000000100001000501400002000000000000000000000000000006110200000000000100000000000000000100100000000
.................................................................................................................ACGTGTATGCTCGTAGCTAT............................................................................................................................20146.0046000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000680200000405060000001000000000000000000000000000001000000000000000000100100000000000000000000000000000000000000000014010000000000000100000000000000000100000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................23138.0038000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000006000000000000001000000000200000000000000000000000000000000000000230200200100000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001330200000000300000000000000000001210000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAA..........................................................................................................................22138.0038000010000100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000230000010001013000000000000000000000000000000000000000000000000000001501100000000000000100000000000000000000010000021030100010000101000000000000000000310000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................23136.0036000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000130000000000040000000000000000100000000000000000000000000000000000001000100000001000002100000000000000000000000000043010401000000201000000000000000000210001000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................21131.0031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000210000000000020000000000000000000000000000000000000000000000000000000001000000500200000000000000000000000000000000001020000000000100100000000000000000810111000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................21131.00310000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000003000000000000000000010000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000021200001000000001200000000000000000110000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000420100020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000100000000000000000000200111000000
..........................................................................................................................................................TATTGCTTGAGAATACACGG...................................................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000002040000004000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000021400000000000100100000000000000000100000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000001000000000000000000000000000000000000000140200110002020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000000000000000000010000000100000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................19119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100010101040000001000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000110000010000000000000000000000000200020000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAAA................................................................................23118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000320300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032100010000000000000000000000000000200000000000
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................18118.0018000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000500000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000001010110000000001000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTT...............................................................................24117.0017000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000400000000000000000000000000001100000000000000201000000000000000301000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTCT.................................................................................22115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002032000000000000000000000000000000000000200100000000010000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAC...............................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGG................................................................................23114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001011000002000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010100000000000002000000000000000000020001000000
..........................................................................................................................................................TATTGCTTGAGAATACAC.....................................................................................18113.0013000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100400000000000000000000000000000000000000000102000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAA...............................................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000010000100000000000000000000000000000210000001000
................................................................................................................CACGTGTATGCTCGTAGCT..............................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010100000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000300000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGC...................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000010000000000200100000000000000000000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTG..................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000100000000000000000200000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000200100000000
.................................................................................................................ACGTGTATGCTCGTAGCTA.............................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000001110000000000000000000000000000000100000000000
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000010000000000000100100000000000000000000000000000000000000000
............................................................................................................................................................TTGCTTGAGAATACACGTAGTT...............................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000100000000000000000000200100000000
droSim2
--------------------AAGT--------------GGATTACGATGGCGTCG-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2211537.0015374794711350164602352563240115000
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................1911299.001299896932060210100010000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211218.00218323013767452283900000
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................231130.001307044420200000800000
..........................................................................................................................................................TATTGCTTGAGAATACAC.....................................................................................18192.0092000029000000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................23157.0057604012510740900000
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................20150.0050500143900010000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23133.0033020100002070201000
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................21126.0026000000026000000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21122.0022000301700100001000
.................................................................................................................ACGTGTATGCTCGTAGCTATAACC........................................................................................................................24117.0017000011600000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................22112.001200000007220100000
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................2117.00711000300000200000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................2217.00750000000001100000
.................................................................................................................ACGTGTATGCTCGTAGCTAT............................................................................................................................2016.00600000600000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................2215.00540000000000100000
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................1913.00300001200000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGG................................................................................2313.00320100000000000000
...........................................................................................................................................................ATTGCTTGAGAATACACG....................................................................................1813.00330000000000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTT..................................................................................2213.00300000003000000000
..........................................................................................................................................................TATTGCTTGAGAATACACA....................................................................................1913.00320100000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAACA........................................................................................................................2412.00200000000000101000
.........................................................................................................................................................TTATTGCTTGAGAATACACG....................................................................................2012.00200100001000000000
.................................................................................................................ACGTGTATGCTCGTAGCT..............................................................................................................................1812.00200000200000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................2212.00200000000000002000
.................................................................................................................ACGTGTATGCTCGTAGCTA.............................................................................................................................1912.00200000200000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA..............................................................................2511.00100000000000001000
................................................................................................................CACGTGTATGCTCGTAGCT..............................................................................................................................1911.00101000000000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGA...................................................................................2111.00100000001000000000
................................................................................................................CACGTGTATGCTCGTAGCTATAAC.........................................................................................................................2411.00100000100000000000
..........................................................................................................................................................TATTGCTTGAGAATACA......................................................................................1711.00100000000010000000
.......................................................................................................................................................TGTTATTGCTTGAGAA..........................................................................................1611.00100000001000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGG...................................................................................2011.00110000000000000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAAG.........................................................................................................................2311.00100000000000100000
..........................................................................................................................................................TATTGCTTGAGAATAC.......................................................................................1611.00100000000010000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAA...............................................................................2411.00110000000000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAA.................................................................................2311.00100000001000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTACC................................................................................2311.00100000000000100000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAGA................................................................................2411.00100000000100000000
.........................................................................................................................................................TTATTGCTTGAGAATACACT....................................................................................2011.00100000001000000000
.................................................................................................................ACGTGTATGCTCGTAGCC..............................................................................................................................1811.00110000000000000000
.................................................................................................................ACGTGTATGCTCGTAGC...............................................................................................................................1711.00100000001000000000
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1811.00100000100000000000
..........................................................................................................................................................TATTGCTTGAGAATA........................................................................................1540.25100000000001000000
..........................................................................................................................................................TATTGCTTGAGAATACACTAG..................................................................................2160.17100000000001000000
droSec2
--------------------AAGT--------------GGATTACGATGGCGTCG-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2216061.006061945110015412475
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................2111075.0010752622642781
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201275.0027513788176
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................231211.0021116795264
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................231108.0010817272242
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................23182.0082454429
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21162.0062434510
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................20121.00215583
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................23119.00190298
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTT...............................................................................24114.00141508
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................22112.00120507
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................22110.00102305
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................22110.00100226
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................2117.0070043
.................................................................................................................ACGTGTATGCTCGTAGCTATAA..........................................................................................................................2215.0050320
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................1915.0051004
.................................................................................................................ACGTGTATGCTCGTAGCTA.............................................................................................................................1914.0041003
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................2114.0040301
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAA...............................................................................2414.0040022
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1914.0041012
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................2314.0042101
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................2014.0043001
............................................................................................................................................................TTGCTTGAGAATACACGTAGT................................................................................2113.0030021
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................1913.0032001
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1813.0032001
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA..............................................................................2512.0020110
...........................................................................................................................................................ATTGCTTGAGAATACACGTAT.................................................................................2112.0021100
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2112.0020002
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTTT..............................................................................2512.0020011
............................................................................................................................................................TTGCTTGAGAATACACGTAGTT...............................................................................2212.0021001
...........................................................................................................................................................ATTGCTTGAGAATACACG....................................................................................1812.0020002
................................................................................................................CACGTGTATGCTCGTAGCTATAA..........................................................................................................................2311.0010010
.................................................................................................................ACGTGTATGCTCGTAGCTATAACA........................................................................................................................2411.0011000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTA...............................................................................2411.0010010
.................................................................................................................ACGTGTATGCTCGTAGCTAT............................................................................................................................2011.0010001
..........................................................................................................................................................TATTGCTTGAGAATACACGTAAA................................................................................2311.0010001
.................................................................................................................ACGTGTATGCTCGTAGCT..............................................................................................................................1811.0011000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAGT................................................................................2411.0010100
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAC...............................................................................2411.0010010
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................2211.0010010
................................................................................................................CACGTGTATGCTCGTAGCTATA...........................................................................................................................2211.0010001
..........................................................................................................................................................TATTGCTTGAGAATACAC.....................................................................................1811.0010010
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTTTT.............................................................................2611.0010001
.................................................................................................................ACGTGTATGCTCGTAGCTATAACCTG......................................................................................................................2611.0011000
.................................................................................................................ACGTGTATGCTCGTAGCTT.............................................................................................................................1911.0010001
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGG................................................................................2311.0010100
....................................................................................................................TGTATGCTCGTAGCTATA...........................................................................................................................1811.0010001
..........................................................................................................................................................TATTGCTTGAGAATACACT....................................................................................1911.0010001
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................2211.0010010
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGA................................................................................2211.0011000
..........................................................................................................................................................TATTGCTTGAGAATACACTAG..................................................................................2150.6030003
droYak3
--------------------------------------------------------------------------------------------------AATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAA------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2213476.003476987668151583458514421000
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................211412.004124358667218740000
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................191194.001941921100000000
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201121.00121114901852270000
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................23196.009615455171400000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................23169.006914195819130000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21144.0044029802410000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................22121.0021010051410000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23121.002106233700000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................22120.0020101300420000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................22115.001523103510000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................2318.00801401200000
.................................................................................................................ACGTGTATGCTCGTAGCTAT............................................................................................................................2018.00800003500000
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................2018.00802101130000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................2317.00700202300000
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................2116.00603120000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2115.00500001400000
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................2115.00500000410000
.................................................................................................................ACGTGTATGCTCGTAGCTATAA..........................................................................................................................2214.00411010100000
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................2113.00300000300000
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1812.00201100000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................2012.00201001000000
............................................................................................................................................................TTGCTTGAGAATACACGTAGT................................................................................2112.00201100000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTCT.................................................................................2211.00100000100000
.......................................................................................................................................CCTGAC--ATCC--AATGTTATTGCT................................................................................................2211.00110000000000
..........................................................................................................................................................TATTGCTTGAGAATACACTC...................................................................................2011.00100001000000
.................................................................................................................ACGTGTATGCTCGTAGCTATAACA........................................................................................................................2411.00100100000000
....................................................................................................................TGTATGCTCGTAGCTATAAC.........................................................................................................................2011.00110000000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................2211.00100010000000
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................2211.00100001000000
..........................................................................................................................................................TATTGCTTGAGAATACAC.....................................................................................1811.00110000000000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAAA................................................................................2311.00100000010000
................................................................................................................CACGTGTATGCTCGTAGCTA.............................................................................................................................2011.00100000010000
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1911.00100000010000
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................1911.00101000000000
..........................................................................................................................................................TATTGCTTGAGAATACACTAG..................................................................................2130.33100000010000
droEre2
---------------------AGT--------------GGATTACGGTGGCGACT-----------------------------------------CCAATCT-CCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAA------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................................................................................TATTGCTTGAGAATACACGTAG.................................................................................2217446.007446966446598252105741270
..........................................................................................................................................................TATTGCTTGAGAATACACGTA..................................................................................2111221.00122131511321489220
..........................................................................................................................................................TATTGCTTGAGAATACACGT...................................................................................201301.00301121341482050
.................................................................................................................ACGTGTATGCTCGTAGCTATAAC.........................................................................................................................231128.001284257184700
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGT................................................................................231102.00102918622560
...........................................................................................................................................................ATTGCTTGAGAATACACGTAG.................................................................................21192.00924625111270
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGA................................................................................23181.00817612014420
..........................................................................................................................................................TATTGCTTGAGAATACACGTAT.................................................................................22160.0060006103410
..........................................................................................................................................................TATTGCTTGAGAATACACGTAA.................................................................................22131.003140504180
.................................................................................................................ACGTGTATGCTCGTAGCTATA...........................................................................................................................21120.002000061130
..........................................................................................................................................................TATTGCTTGAGAATACACGTAC.................................................................................22118.00180720180
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGC................................................................................23117.00171222190
............................................................................................................................................................TTGCTTGAGAATACACGTAG.................................................................................20117.001751000110
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAG.................................................................................23112.00121010280
..........................................................................................................................................................TATTGCTTGAGAATACACG....................................................................................1918.0080120230
.................................................................................................................ACGTGTATGCTCGTAGCTAT............................................................................................................................2017.0070010150
.................................................................................................................ACGTGTATGCTCGTAGCTA.............................................................................................................................1917.0071000060
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGT................................................................................2216.0061102020
..........................................................................................................................................................TATTGCTTGAGAATACACGTG..................................................................................2115.0051000040
.............................................................................................................................................................TGCTTGAGAATACACGTAG.................................................................................1915.0051000220
.........................................................................................................................................................TTATTGCTTGAGAATACACGTA..................................................................................2214.0041010110
..............................................................................................................................................................GCTTGAGAATACACGTAG.................................................................................1814.0040000040
...........................................................................................................................................................ATTGCTTGAGAATACACGTA..................................................................................2014.0042000020
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGAA...............................................................................2413.0030010020
.................................................................................................................ACGTGTATGCTCGTAGCTATAA..........................................................................................................................2213.0030011100
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGG................................................................................2313.0030001110
..........................................................................................................................................................TATTGCTTGAGAATACACGTT..................................................................................2113.0030100200
.........................................................................................................................................................TTATTGCTTGAGAATACACG....................................................................................2013.0030000030
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGA................................................................................2212.0022000000
.........................................................................................................................................................TTATTGCTTGAGAATACACGT...................................................................................2112.0020000110
..........................................................................................................................................................TATTGCTTGAGAATACACGTC..................................................................................2112.0020010010
.................................................................................................................ACGTGTATGCTCGTAGCTATAAA.........................................................................................................................2312.0020010010
.................................................................................................................ACGTGTATGCTCGTAGCT..............................................................................................................................1812.0020000020
...........................................................................................................................................................ATTGCTTGAGAATACACGT...................................................................................1912.0020000020
................................................................................................................CACGTGTATGCTCGTAGCTATAA..........................................................................................................................2312.0021000100
.............................................................................................................................................................TGCTTGAGAATACACGTAA.................................................................................1911.0010000100
............................................................................................................................................................TTGCTTGAGAATACACGTAGTCT..............................................................................2311.0010000010
..........................................................................................................................................................TATTGCTTGAGAATACACGTAAA................................................................................2311.0010000010
..........................................................................................................................................................TATTGCTTGAGAATACACTAG..................................................................................2141.0043000010
................................................................................................................CACGTGTATGCTCGTAGCTATA...........................................................................................................................2211.0010000010
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGC................................................................................2211.0010000010
............................................................................................................................................................TTGCTTGAGAATACACGT...................................................................................1811.0010000010
.................................................................................................................ACGTGTATGCTCGTAGCTATAAT.........................................................................................................................2311.0010000010
..........................................................................................................................................................TATTGCTTGAGAATACACTA...................................................................................2011.0010000010
.........................................................................................................................................................TTATTGCTTGAGAATACACGTAA.................................................................................2311.0010010000
..................................................................................................................................................C--AATGTTATTGCTTGAGAATACACG....................................................................................2511.0010010000
..........................................................................................................................................................TATTGCTTGAGAATACACGTAGTT...............................................................................2411.0010000010
...........................................................................................................................................................ATTGCTTGAGAATACACGTAGTC...............................................................................2311.0011000000
............................................................................................................................................................TTGCTTGAGAATACACGTAGT................................................................................2111.0010000100

Generated: 10/20/2015 at 10:19 PM