ID:

dps-mir-1000

 Coordinate:

2:21158172-21158262 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.5 -41.2 -41.1

Flybase annnotation

Antisense to intron [Dpse\GA27393-in]; utr3 [utr3_minus_8785]

No Repeatable elements found

Sense Strand Reads

GATACATATATATCGAATTACATACGGCGTCGGATCGGAGCAGATGAGAGGGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACTTAATTATAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAGAGAAGGAGAAGCTACAAAGCTACAAAGCTACGGAAAA

*************************************************.((((((((.((.((.((.(((((((((.((((((((((((((.....))))))..)))))))))).))))))).)).)).)).))))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M062

head

 M059

embryo

 GSM444067

head

 GSM343916

embryo

 M040

female body

 V112

male body		 SRR902012

CNS imaginal disc

 M022

male body		 SRR902010

ovaries
................................................................ATATTGTCCTGTCACAGCAGT.......................................................................................................... 21 0 1 24735.00 24735 6583 2173 10327 2055 1982 1506 102 7 0
................................................................ATATTGTCCTGTCACAGCAGTA......................................................................................................... 22 0 1 24714.00 24714 3928 9515 1093 8201 1602 86 280 8 1
................................................................ATATTGTCCTGTCACAGCAG........................................................................................................... 20 0 1 2833.00 2833 583 61 1029 20 1048 38 46 8 0
................................................................AGATTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 2075.00 2075 611 1449 0 14 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGC.......................................................................................................... 21 1 1 1600.00 1600 1087 465 37 5 3 3 0 0 0
................................................................AGATTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 1365.00 1365 1026 324 14 1 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTT......................................................................................................... 22 1 1 850.00 850 325 10 287 60 123 39 6 0 0
................................................................ATATTGTCCTGTCACAGCA............................................................................................................ 19 0 1 533.00 533 78 1 368 9 70 2 4 1 0
...........................................................................................................CTGCTGGGTCGGGGCATTAACA.............................................................. 22 0 1 343.00 343 6 51 25 95 16 4 146 0 0
................................................................AGATTGTCCTGTCACAGCAGC.......................................................................................................... 21 2 1 290.00 290 213 77 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTAA........................................................................................................ 23 1 1 276.00 276 39 11 116 51 50 2 7 0 0
................................................................ATATTGTCCTGTCACAGCAGTAT........................................................................................................ 23 0 1 263.00 263 119 37 11 8 86 0 2 0 0
.................................................................TATTGTCCTGTCACAGCAGT.......................................................................................................... 20 0 1 196.00 196 37 4 8 5 139 2 1 0 0
.................................................................TATTGTCCTGTCACAGCAGTA......................................................................................................... 21 0 1 173.00 173 18 23 2 11 118 0 1 0 0
................................................................ATAGTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 140.00 140 33 95 2 10 0 0 0 0 0
...........................................................................................................CTGCTGGGTCGGGGCATTAAC............................................................... 21 0 1 139.00 139 3 54 9 25 1 2 45 0 0
................................................................ATACTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 130.00 130 36 85 1 7 1 0 0 0 0
................................................................TTATTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 118.00 118 43 69 1 5 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTC......................................................................................................... 22 1 1 116.00 116 46 34 13 20 2 1 0 0 0
.................................................................TATTGTCCTGTCACAGCAG........................................................................................................... 19 0 1 102.00 102 1 0 0 0 100 0 1 0 0
................................................................ATATTGTCCTGTCACAGCAGGA......................................................................................................... 22 1 1 96.00 96 17 37 6 36 0 0 0 0 0
................................................................AGATTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 94.00 94 86 8 0 0 0 0 0 0 0
................................................................ATAGTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 90.00 90 63 15 6 6 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGC............................................................................................................. 18 0 1 90.00 90 73 2 0 0 7 0 7 1 0
................................................................TTATTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 83.00 83 59 15 9 0 0 0 0 0 0
................................................................ATACTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 81.00 81 51 17 10 1 0 2 0 0 0
................................................................ATCTTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 80.00 80 35 11 27 5 0 2 0 0 0
................................................................ATATTTTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 79.00 79 24 50 1 4 0 0 0 0 0
................................................................ATATTGTCCTGCCACAGCAGT.......................................................................................................... 21 1 1 78.00 78 20 7 46 3 1 0 0 1 0
................................................................ATATTGGCCTGTCACAGCAGTA......................................................................................................... 22 1 1 72.00 72 12 18 3 39 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGG.......................................................................................................... 21 1 1 69.00 69 21 10 22 14 1 1 0 0 0
................................................................ATCTTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 69.00 69 15 47 4 3 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCCGT.......................................................................................................... 21 1 1 66.00 66 0 0 49 16 0 1 0 0 0
................................................................ATAATGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 66.00 66 19 42 0 5 0 0 0 0 0
................................................................ATATTGTACTGTCACAGCAGTA......................................................................................................... 22 1 1 65.00 65 16 23 3 22 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCCGTA......................................................................................................... 22 1 1 64.00 64 0 0 2 62 0 0 0 0 0
................................................................ATATTGGCCTGTCACAGCAGT.......................................................................................................... 21 1 1 59.00 59 12 2 36 9 0 0 0 0 0
..................................................................ATTGTCCTGTCACAGCAGT.......................................................................................................... 19 0 1 58.00 58 31 4 0 0 23 0 0 0 0
...............................................................CATATTGTCCTGTCACAGCAGT.......................................................................................................... 22 1 1 58.00 58 42 7 8 0 1 0 0 0 0
................................................................AGATTGTCCTGTCACAGCAGTT......................................................................................................... 22 2 1 57.00 57 54 1 1 1 0 0 0 0 0
...............................................................CATATTGTCCTGTCACAGCAGTA......................................................................................................... 23 1 1 55.00 55 26 19 0 8 2 0 0 0 0
................................................................ATATTGTCCTGTCAAAGCAGTA......................................................................................................... 22 1 1 55.00 55 9 25 1 20 0 0 0 0 0
..................................................................ATTGTCCTGTCACAGCAGTA......................................................................................................... 20 0 1 54.00 54 16 25 0 3 9 1 0 0 0
................................................................ATATTGTCCTGCCACAGCAGTA......................................................................................................... 22 1 1 53.00 53 11 26 2 11 3 0 0 0 0
................................................................ATATTGTCCTGTAACAGCAGTA......................................................................................................... 22 1 1 52.00 52 11 25 1 15 0 0 0 0 0
................................................................ATATTTTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 46.00 46 28 12 5 0 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGA.......................................................................................................... 21 1 1 45.00 45 10 3 24 2 4 1 1 0 0
................................................................ATAATGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 45.00 45 28 15 0 2 0 0 0 0 0
................................................................ATATTGTCATGTCACAGCAGTA......................................................................................................... 22 1 1 45.00 45 3 14 0 28 0 0 0 0 0
................................................................ATATTGTACTGTCACAGCAGT.......................................................................................................... 21 1 1 44.00 44 26 6 4 7 0 1 0 0 0
................................................................TGATTGTCCTGTCACAGCAGTA......................................................................................................... 22 2 1 42.00 42 12 30 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACATCAGT.......................................................................................................... 21 1 1 40.00 40 17 3 15 4 0 1 0 0 0
................................................................ATATTGTCCTGTCACCGCAGTA......................................................................................................... 22 1 1 38.00 38 0 0 1 37 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCATT.......................................................................................................... 21 1 1 38.00 38 10 0 23 2 3 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGCA......................................................................................................... 22 1 1 38.00 38 1 8 2 26 1 0 0 0 0
................................................................ATATTGTCCTGGCACAGCAGT.......................................................................................................... 21 1 1 37.00 37 2 0 27 8 0 0 0 0 0
................................................................ATATTGTCCTGTAACAGCAGT.......................................................................................................... 21 1 1 37.00 37 16 4 13 4 0 0 0 0 0
................................................................ATATTGTCCTGTCAAAGCAGT.......................................................................................................... 21 1 1 36.00 36 14 6 12 3 0 1 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTG......................................................................................................... 22 1 1 35.00 35 2 5 2 26 0 0 0 0 0
................................................................ATATTGCCCTGTCACAGCAGT.......................................................................................................... 21 1 1 34.00 34 8 1 18 3 1 3 0 0 0
................................................................ATATTGTCCCGTCACAGCAGT.......................................................................................................... 21 1 1 34.00 34 6 2 13 7 4 2 0 0 0
................................................................ATATTGTCATGTCACAGCAGT.......................................................................................................... 21 1 1 31.00 31 4 2 15 10 0 0 0 0 0
................................................................ATATTGTCCTGTCACTGCAGTA......................................................................................................... 22 1 1 31.00 31 10 9 1 11 0 0 0 0 0
................................................................TGATTGTCCTGTCACAGCAGT.......................................................................................................... 21 2 1 29.00 29 24 5 0 0 0 0 0 0 0
................................................................ACATTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 29.00 29 7 16 0 5 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCGGTA......................................................................................................... 22 1 1 28.00 28 3 8 3 10 3 0 1 0 0
................................................................ATATTGTCCTGTCACTGCAGT.......................................................................................................... 21 1 1 28.00 28 15 6 6 1 0 0 0 0 0
................................................................ATATTGTCCTGTCACATCAGTA......................................................................................................... 22 1 1 27.00 27 3 6 2 12 4 0 0 0 0
................................................................ACATTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 26.00 26 14 5 3 1 0 3 0 0 0
................................................................ATATTGTCCTGTCACACCAGT.......................................................................................................... 21 1 1 25.00 25 0 0 22 2 1 0 0 0 0
................................................................ATATTGTCCTGTCATAGCAGTA......................................................................................................... 22 1 1 25.00 25 1 5 1 17 0 0 1 0 0
................................................................ATATTGTCCTGTCACAGCAGTTT........................................................................................................ 23 1 1 25.00 25 9 0 9 0 6 1 0 0 0
................................................................AGATTGTCCTGTCACAGCAGTAT........................................................................................................ 23 1 1 25.00 25 17 8 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCACT.......................................................................................................... 21 1 1 24.00 24 2 0 15 6 0 1 0 0 0
................................................................ATATTGTCCTGTCACAGCGGT.......................................................................................................... 21 1 1 24.00 24 1 2 14 5 1 1 0 0 0
................................................................ATATTGTCCTGTCACAGCTGTA......................................................................................................... 22 1 1 24.00 24 0 9 2 13 0 0 0 0 0
................................................................ATATCGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 24.00 24 2 7 4 10 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCATTA......................................................................................................... 22 1 1 23.00 23 4 10 1 8 0 0 0 0 0
................................................................ATATTGCCCTGTCACAGCAGTA......................................................................................................... 22 1 1 23.00 23 2 6 0 15 0 0 0 0 0
................................................................ATATTGTCCTGTTACAGCAGTA......................................................................................................... 22 1 1 23.00 23 3 5 0 14 1 0 0 0 0
................................................................AGATTGTACTGTCACAGCAGTA......................................................................................................... 22 2 1 23.00 23 5 15 0 3 0 0 0 0 0
................................................................ATATTATCCTGTCACAGCAGTA......................................................................................................... 22 1 1 23.00 23 2 9 0 12 0 0 0 0 0
................................................................ATGTTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 23.00 23 1 1 15 4 1 1 0 0 0
................................................................AAATTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 23.00 23 3 19 0 1 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGTAGTA......................................................................................................... 22 1 1 22.00 22 5 5 2 9 1 0 0 0 0
................................................................TTATTGTCCTGTCACAGCAGC.......................................................................................................... 21 2 1 22.00 22 18 4 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCGCAGCAGTA......................................................................................................... 22 1 1 21.00 21 3 4 2 11 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGAAGT.......................................................................................................... 21 1 1 20.00 20 0 0 16 3 0 1 0 0 0
................................................................ATATTGTCCTGTCACAGCTGT.......................................................................................................... 21 1 1 20.00 20 5 0 9 5 0 1 0 0 0
................................................................ATATTGTCCTGGCACAGCAGTA......................................................................................................... 22 1 1 20.00 20 0 0 2 18 0 0 0 0 0
................................................................ATATTGTCCTGTCACCGCAGT.......................................................................................................... 21 1 1 20.00 20 0 0 13 7 0 0 0 0 0
................................................................ATATTGTCTTGTCACAGCAGT.......................................................................................................... 21 1 1 20.00 20 5 0 13 1 0 1 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTAC........................................................................................................ 23 1 1 19.00 19 7 7 0 3 2 0 0 0 0
................................................................GTATTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 19.00 19 3 1 13 1 0 1 0 0 0
................................................................ATATTGTCCTGTCACAACAGTA......................................................................................................... 22 1 1 19.00 19 1 4 1 13 0 0 0 0 0
......................................................................................TTGTAACTTAATTATAGCCTA.................................................................................... 21 0 1 19.00 19 1 7 1 9 0 1 0 0 0
................................................................ATATTGTCCTATCACAGCAGT.......................................................................................................... 21 1 1 19.00 19 7 0 11 1 0 0 0 0 0
................................................................AGCTTGTCCTGTCACAGCAGTA......................................................................................................... 22 2 1 19.00 19 4 15 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACGGCAGTA......................................................................................................... 22 1 1 18.00 18 3 5 0 9 1 0 0 0 0
................................................................AGATTGTCCTGTCACAGCAGGA......................................................................................................... 22 2 1 18.00 18 6 10 0 2 0 0 0 0 0
................................................................GTATTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 18.00 18 4 4 1 8 1 0 0 0 0
................................................................ATATTATCCTGTCACAGCAGT.......................................................................................................... 21 1 1 18.00 18 4 1 9 4 0 0 0 0 0
................................................................ATATTGTCCTGTCATAGCAGT.......................................................................................................... 21 1 1 17.00 17 4 0 10 2 0 1 0 0 0
................................................................ATATTGTCCTGTCACACCAGTA......................................................................................................... 22 1 1 17.00 17 2 0 7 7 1 0 0 0 0
................................................................ATATTGTCCTTTCACAGCAGTA......................................................................................................... 22 1 1 17.00 17 4 4 2 7 0 0 0 0 0
................................................................ATATTGTCCCGTCACAGCAGTA......................................................................................................... 22 1 1 17.00 17 2 3 0 11 0 0 1 0 0
................................................................ATATTGTCTTGTCACAGCAGTA......................................................................................................... 22 1 1 17.00 17 3 5 1 7 0 1 0 0 0
................................................................ATATTGTCCTTTCACAGCAGT.......................................................................................................... 21 1 1 17.00 17 3 3 8 2 0 1 0 0 0
................................................................ATATTGTCCTGTCGCAGCAGT.......................................................................................................... 21 1 1 16.00 16 3 1 10 0 1 1 0 0 0
................................................................AGACTGTCCTGTCACAGCAGTA......................................................................................................... 22 2 1 16.00 16 4 11 1 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGTAGT.......................................................................................................... 21 1 1 16.00 16 6 1 7 1 0 1 0 0 0
................................................................ATATTGACCTGTCACAGCAGTA......................................................................................................... 22 1 1 16.00 16 0 2 1 13 0 0 0 0 0
................................................................ATATTGTCCTGTTACAGCAGT.......................................................................................................... 21 1 1 16.00 16 3 3 7 3 0 0 0 0 0
................................................................ATGTTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 15.00 15 1 5 2 7 0 0 0 0 0
................................................................ATATTGTCCTCTCACAGCAGTA......................................................................................................... 22 1 1 15.00 15 1 2 1 10 1 0 0 0 0
................................................................ATATTGTCCTGTCACAACAGT.......................................................................................................... 21 1 1 15.00 15 2 2 8 3 0 0 0 0 0
................................................................AGATTGTACTGTCACAGCAGT.......................................................................................................... 21 2 1 15.00 15 10 5 0 0 0 0 0 0 0
................................................................ATATTGTTCTGTCACAGCAGT.......................................................................................................... 21 1 1 15.00 15 2 1 6 4 0 2 0 0 0
................................................................ATATTGACCTGTCACAGCAGT.......................................................................................................... 21 1 1 15.00 15 0 1 9 4 1 0 0 0 0
.................................................................TATTGTCCTGTCACAGCAGTAT........................................................................................................ 22 0 1 15.00 15 0 2 4 0 8 0 1 0 0
................................................................AGAGTGTCCTGTCACAGCAGTA......................................................................................................... 22 2 1 15.00 15 3 12 0 0 0 0 0 0 0
................................................................ATATTGTCCTATCACAGCAGTA......................................................................................................... 22 1 1 15.00 15 3 0 2 9 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGAAGTA......................................................................................................... 22 1 1 14.00 14 0 0 2 11 1 0 0 0 0
................................................................ATATTCTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 14.00 14 1 1 8 3 0 1 0 0 0
................................................................ATCTTGTCCTGTCACAGCAGC.......................................................................................................... 21 2 1 14.00 14 12 1 0 0 0 1 0 0 0
................................................................AGATTGTCCTGTCAAAGCAGTA......................................................................................................... 22 2 1 14.00 14 5 8 0 1 0 0 0 0 0
................................................................ATATTGTCCTGTCACGGCAGT.......................................................................................................... 21 1 1 14.00 14 4 0 6 2 1 1 0 0 0
...................................................................TTGTCCTGTCACAGCAGTA......................................................................................................... 19 0 1 13.00 13 3 3 0 2 5 0 0 0 0
................................................................ATATCGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 13.00 13 3 0 7 1 0 2 0 0 0
................................................................ATATTGTCCTGACACAGCAGT.......................................................................................................... 21 1 1 13.00 13 3 0 9 0 0 1 0 0 0
................................................................ATATTGTCCTCTCACAGCAGT.......................................................................................................... 21 1 1 13.00 13 1 0 9 1 1 1 0 0 0
..........................................................................................................ACTGCTGGGTCGGGGCATTAAC............................................................... 22 0 1 13.00 13 0 5 3 2 0 0 3 0 0
................................................................ATATTGTTCTGTCACAGCAGTA......................................................................................................... 22 1 1 13.00 13 2 6 0 5 0 0 0 0 0
................................................................ATATTGTCCGGTCACAGCAGT.......................................................................................................... 21 1 1 13.00 13 0 1 10 2 0 0 0 0 0
................................................................AGATTGGCCTGTCACAGCAGTA......................................................................................................... 22 2 1 12.00 12 5 7 0 0 0 0 0 0 0
...........................................................................................................CGGCTGGGTCGGGGCATTAACA.............................................................. 22 1 1 12.00 12 2 10 0 0 0 0 0 0 0
................................................................ATATTGTGCTGTCACAGCAGT.......................................................................................................... 21 1 1 12.00 12 3 0 3 6 0 0 0 0 0
................................................................AGATTGTCCTGTCACAGCAGTAA........................................................................................................ 23 2 1 12.00 12 7 4 0 1 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCACTA......................................................................................................... 22 1 1 12.00 12 1 3 2 6 0 0 0 0 0
................................................................AAATTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 12.00 12 5 2 5 0 0 0 0 0 0
................................................................AGATTGTCCTGTCACAGCA............................................................................................................ 19 1 1 12.00 12 9 1 2 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCCG........................................................................................................... 20 1 1 11.00 11 0 0 10 1 0 0 0 0 0
................................................................ATATTGTCCTGTCCCAGCAGT.......................................................................................................... 21 1 1 11.00 11 1 0 9 1 0 0 0 0 0
................................................................ATATTGTCCTGTAAAAGCAGTA......................................................................................................... 22 2 1 11.00 11 3 8 0 0 0 0 0 0 0
................................................................ATATGGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 11.00 11 5 0 6 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCTTT.......................................................................................................... 21 2 1 11.00 11 7 0 1 0 3 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGAA......................................................................................................... 22 1 1 11.00 11 2 7 1 1 0 0 0 0 0
.................................................................TATTGTCCTGTCACAGCAGTT......................................................................................................... 21 1 1 11.00 11 1 0 1 0 8 1 0 0 0
................................................................ATATTGTCCTGTCACAGCTT........................................................................................................... 20 2 2 10.00 20 9 0 5 0 5 1 0 0 0
................................................................ATATTGTCCTGTCTCAGCAGT.......................................................................................................... 21 1 1 10.00 10 2 0 3 5 0 0 0 0 0
................................................................ATATTGTCCTGCCAAAGCAGTA......................................................................................................... 22 2 1 10.00 10 2 8 0 0 0 0 0 0 0
................................................................ATACTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 10.00 10 8 1 1 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAAT.......................................................................................................... 21 1 1 10.00 10 1 1 4 3 0 1 0 0 0
................................................................AGATTGGCCTGTCACAGCAGT.......................................................................................................... 21 2 1 10.00 10 2 2 3 3 0 0 0 0 0
................................................................ATAGTGTCCTGTCACAGCAGC.......................................................................................................... 21 2 1 9.00 9 8 1 0 0 0 0 0 0 0
................................................................ATATGGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 9.00 9 0 2 0 7 0 0 0 0 0
................................................................AGATTGTCCTGTCACAGCAGTC......................................................................................................... 22 2 1 9.00 9 1 8 0 0 0 0 0 0 0
................................................................AGAATGTCCTGTCACAGCAGTA......................................................................................................... 22 2 1 9.00 9 1 8 0 0 0 0 0 0 0
................................................................AGAATGTCCTGTCACAGCAGT.......................................................................................................... 21 2 1 9.00 9 8 1 0 0 0 0 0 0 0
................................................................ATATTGGCCTGCCACAGCAGT.......................................................................................................... 21 2 1 9.00 9 0 0 7 2 0 0 0 0 0
................................................................AGACTGTCCTGTCACAGCAGT.......................................................................................................... 21 2 1 9.00 9 5 4 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCAGAGCAGTA......................................................................................................... 22 1 1 9.00 9 0 1 0 8 0 0 0 0 0
................................................................AGCTTGTCCTGTCACAGCAGT.......................................................................................................... 21 2 1 9.00 9 9 0 0 0 0 0 0 0 0
...............................................................CATATTGTCCTGTCACAGCAG........................................................................................................... 21 1 1 9.00 9 3 0 2 0 4 0 0 0 0
................................................................ATATTGTCCTGTCACACCAG........................................................................................................... 20 1 1 9.00 9 0 0 9 0 0 0 0 0 0
................................................................ATATTGTACTGTCACAGCAGTC......................................................................................................... 22 2 1 9.00 9 2 5 0 2 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGGAGTA......................................................................................................... 22 1 1 9.00 9 1 0 0 8 0 0 0 0 0
................................................................ATAATGTCCTGTCACAGCAGC.......................................................................................................... 21 2 1 9.00 9 6 3 0 0 0 0 0 0 0
................................................................ATTTTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 8.00 8 1 0 3 4 0 0 0 0 0
..................................................................ATTGTCCTGTCACAGCAGC.......................................................................................................... 19 1 1 8.00 8 8 0 0 0 0 0 0 0 0
................................................................ATATTGTCGTGTCACAGCAGTA......................................................................................................... 22 1 1 8.00 8 0 5 0 3 0 0 0 0 0
................................................................ATATTGTCCTGTCTCAGCAGTA......................................................................................................... 22 1 1 8.00 8 0 0 0 8 0 0 0 0 0
...........................................................................................................CGGCTGGGTCGGGGCATTAAC............................................................... 21 1 1 8.00 8 1 7 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTGACAGCAGTA......................................................................................................... 22 1 1 8.00 8 3 1 0 4 0 0 0 0 0
................................................................ATATTGTCCTGTCCCAGCAGTA......................................................................................................... 22 1 1 8.00 8 0 0 0 8 0 0 0 0 0
................................................................AGATTGTCCTGTAACAGCAGTA......................................................................................................... 22 2 1 8.00 8 3 4 0 1 0 0 0 0 0
................................................................ATATTGGCCTGTCACAGCAGTT......................................................................................................... 22 2 1 8.00 8 3 0 2 3 0 0 0 0 0
................................................................ATATTGTCCTGTCACATCAGC.......................................................................................................... 21 2 1 8.00 8 2 2 4 0 0 0 0 0 0
.................................................................TATTGTCCTGTCACAGCA............................................................................................................ 18 0 1 8.00 8 1 0 0 0 7 0 0 0 0
................................................................ATATTGTCCTGTCACAGCG............................................................................................................ 19 1 1 8.00 8 4 0 4 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGCT......................................................................................................... 22 2 1 8.00 8 0 0 1 7 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTAG........................................................................................................ 23 1 1 8.00 8 1 0 1 0 5 0 1 0 0
................................................................ATATTGTCCTGTCACAGCATTC......................................................................................................... 22 2 1 8.00 8 1 7 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCT............................................................................................................ 19 1 2 7.50 15 5 0 5 0 5 0 0 0 0
................................................................ATATTGTCCTGCCACAGCAG........................................................................................................... 20 1 1 7.00 7 0 0 7 0 0 0 0 0 0
................................................................ATATTTTCCTGTCACAGCAGC.......................................................................................................... 21 2 2 7.00 14 10 3 0 1 0 0 0 0 0
................................................................ATAGTGGCCTGTCACAGCAGTA......................................................................................................... 22 2 1 7.00 7 0 2 0 5 0 0 0 0 0
.............................................................ATCATATTGTCCTGTCACAGCAGT.......................................................................................................... 24 2 1 7.00 7 6 1 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAA........................................................................................................... 20 1 1 7.00 7 1 0 4 0 1 0 1 0 0
................................................................ATATTGTCCTGTCACAGCAT........................................................................................................... 20 1 1 7.00 7 4 0 3 0 0 0 0 0 0
................................................................ATATTCTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 7.00 7 1 1 1 3 1 0 0 0 0
..................................................................ATTGTCCTGTCACAGCAG........................................................................................................... 18 0 1 7.00 7 3 1 0 0 3 0 0 0 0
................................................................ATTTTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 7.00 7 1 2 1 2 1 0 0 0 0
...........................................................................................................CTGCTGGGTCGGGGCATTA................................................................. 19 0 1 7.00 7 0 0 4 3 0 0 0 0 0
................................................................ATACTGTCCTGTCACAGCAGC.......................................................................................................... 21 2 1 7.00 7 4 3 0 0 0 0 0 0 0
................................................................CTATTGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 7.00 7 1 2 0 4 0 0 0 0 0
................................................................ATATTGTCCTGCCACAGCAGC.......................................................................................................... 21 2 1 7.00 7 3 0 4 0 0 0 0 0 0
................................................................ATATTGTACTGTCACAGCAGC.......................................................................................................... 21 2 1 7.00 7 1 5 0 1 0 0 0 0 0
................................................................ATATAGTCCTGTCACAGCAGTA......................................................................................................... 22 1 1 7.00 7 0 3 0 4 0 0 0 0 0
...................................................................TTGTCCTGTCACAGCAGT.......................................................................................................... 18 0 1 7.00 7 1 0 0 1 4 1 0 0 0
................................................................ATATAGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 6.00 6 1 2 2 0 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTAAA....................................................................................................... 24 2 1 6.00 6 0 0 3 0 2 1 0 0 0
................................................................AGATTTTCCTGTCACAGCAGT.......................................................................................................... 21 2 1 6.00 6 5 1 0 0 0 0 0 0 0
................................................................TTATTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 6.00 6 4 0 1 1 0 0 0 0 0
................................................................ATATTGTCTTGTCACAGCAGTT......................................................................................................... 22 2 1 6.00 6 0 0 2 3 0 1 0 0 0
................................................................ATATTGGCATGTCACAGCAGTA......................................................................................................... 22 2 1 6.00 6 0 0 0 6 0 0 0 0 0
................................................................ATAGTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 6.00 6 5 0 0 1 0 0 0 0 0
..................................................................ATTGTCCTGTCACAGCAGTATT....................................................................................................... 22 0 1 6.00 6 3 2 1 0 0 0 0 0 0
................................................................ATCTTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 6.00 6 3 0 3 0 0 0 0 0 0
...............................................................CATATTGTCCTGTCACAGCAGC.......................................................................................................... 22 2 1 6.00 6 5 1 0 0 0 0 0 0 0
................................................................AGAGTGTCCTGTCACAGCAGT.......................................................................................................... 21 2 1 6.00 6 4 2 0 0 0 0 0 0 0
................................................................AGATTTTCCTGTCACAGCAGTA......................................................................................................... 22 2 1 6.00 6 3 3 0 0 0 0 0 0 0
................................................................ATATTGTGCTGTCACAGCAGTA......................................................................................................... 22 1 1 6.00 6 0 2 1 3 0 0 0 0 0
................................................................ATATTGTCCTGTCAGAGCAGT.......................................................................................................... 21 1 1 6.00 6 2 0 2 2 0 0 0 0 0
................................................................CTATTGTCCTGTCACAGCAGT.......................................................................................................... 21 1 1 6.00 6 1 1 2 0 0 2 0 0 0
................................................................ATATTGGCCTGTCACAGCAGC.......................................................................................................... 21 2 1 6.00 6 3 2 1 0 0 0 0 0 0
............................................................GATCATATTGTCCTGTCACAGCAGTA......................................................................................................... 26 3 1 6.00 6 2 4 0 0 0 0 0 0 0
................................................................ATATTGTCATGTCACAGCAG........................................................................................................... 20 1 1 6.00 6 3 0 3 0 0 0 0 0 0
..................................................................AGTGTCCTGTCACAGCAGTA......................................................................................................... 20 1 1 6.00 6 4 2 0 0 0 0 0 0 0
................................................................ATATTGTCCAGTCACAGCAGTA......................................................................................................... 22 1 1 6.00 6 4 1 0 1 0 0 0 0 0
................................................................AGATTGTCCTGTAACAGCAGT.......................................................................................................... 21 2 1 6.00 6 3 2 0 1 0 0 0 0 0
................................................................ATATTGTACTGTCACAGCAGTT......................................................................................................... 22 2 1 6.00 6 3 0 2 1 0 0 0 0 0
................................................................ATATTGTCCTGTAAAAGCAGT.......................................................................................................... 21 2 1 5.00 5 2 3 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACATCAGTC......................................................................................................... 22 2 1 5.00 5 2 3 0 0 0 0 0 0 0
................................................................ATATTGTACTGTCACATCAGTA......................................................................................................... 22 2 1 5.00 5 2 3 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACACCAGG.......................................................................................................... 21 2 1 5.00 5 0 0 4 1 0 0 0 0 0
................................................................ATATTGGCCTGTCACAGCAGTG......................................................................................................... 22 2 1 5.00 5 0 0 1 4 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAC........................................................................................................... 20 1 1 5.00 5 5 0 0 0 0 0 0 0 0
................................................................AGATTGTCCTGTCACAGCATTA......................................................................................................... 22 2 1 5.00 5 4 1 0 0 0 0 0 0 0
...............................................................CATATTGTCCTGTCACAGCAGTT......................................................................................................... 23 2 1 5.00 5 4 0 1 0 0 0 0 0 0
...............................................................CATTTTGTCCTGTCACAGCAGT.......................................................................................................... 22 2 1 5.00 5 4 1 0 0 0 0 0 0 0
...........................................................................................................CTGCTGGGTCGGGGCATTT................................................................. 19 1 1 5.00 5 0 0 3 0 1 1 0 0 0
................................................................ATAGTGTCCTGTCACAGCAGTT......................................................................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTAACAGCAGC.......................................................................................................... 21 2 1 5.00 5 3 1 1 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGGT......................................................................................................... 22 2 1 5.00 5 1 0 0 4 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTATT....................................................................................................... 24 0 1 5.00 5 2 1 0 1 1 0 0 0 0
................................................................ATATTGTAATGTCACAGCAGTA......................................................................................................... 22 2 1 5.00 5 1 3 0 1 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAATA......................................................................................................... 22 1 1 5.00 5 0 1 0 4 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCATA.......................................................................................................... 21 2 1 5.00 5 4 0 1 0 0 0 0 0 0
............................................................GATCATATTGTCCTGTCACAGCAGT.......................................................................................................... 25 3 1 5.00 5 3 2 0 0 0 0 0 0 0
................................................................ATATGGGCCTGTCACAGCAGTA......................................................................................................... 22 2 1 5.00 5 0 0 2 3 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCATC.......................................................................................................... 21 2 1 5.00 5 2 1 2 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACCGCCGT.......................................................................................................... 21 2 1 5.00 5 0 0 5 0 0 0 0 0 0
................................................................ATATTGTACTGTCACAGCAGGA......................................................................................................... 22 2 1 5.00 5 0 1 0 4 0 0 0 0 0
................................................................ATATTGTCCTGACACAGCAGTA......................................................................................................... 22 1 1 5.00 5 0 0 0 4 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCCGCA......................................................................................................... 22 2 1 4.00 4 0 0 0 4 0 0 0 0 0
................................................................ATATTGTCTTGTCACAGCAG........................................................................................................... 20 1 1 4.00 4 0 0 4 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACACCAGC.......................................................................................................... 21 2 1 4.00 4 2 0 2 0 0 0 0 0 0
..................................................................ATATTCCTGTCACAGCAGTA......................................................................................................... 20 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................ATATTGTCATGTCACAGCAGTG......................................................................................................... 22 2 1 4.00 4 0 0 2 2 0 0 0 0 0
..................................................................AGTGTCCTGTCACAGCAGT.......................................................................................................... 19 1 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAGTTG........................................................................................................ 23 2 1 4.00 4 1 0 1 0 1 0 1 0 0
..............................................................TCATATTGTCCTGTCACAGCAGT.......................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................ATATTGGCCTGTCACCGCAGT.......................................................................................................... 21 2 1 4.00 4 0 0 2 2 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCAAC.......................................................................................................... 21 2 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................ATATTGGCCTGTCACAGCAG........................................................................................................... 20 1 1 4.00 4 1 0 2 1 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGGAGT.......................................................................................................... 21 1 1 4.00 4 0 0 2 2 0 0 0 0 0
................................................................AGATTGTCCTGTCACAGCTGT.......................................................................................................... 21 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCAAAGCAGG.......................................................................................................... 21 2 1 4.00 4 1 2 1 0 0 0 0 0 0
................................................................ATATTGTCCTGTGACAGCAGT.......................................................................................................... 21 1 1 4.00 4 0 1 3 0 0 0 0 0 0
................................................................ATATTGTCCTGTCGCAGCAG........................................................................................................... 20 1 1 4.00 4 2 0 2 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCTGTT......................................................................................................... 22 2 1 4.00 4 0 0 0 4 0 0 0 0 0
................................................................ATATTGTCCGGTCACAGCAGC.......................................................................................................... 21 2 1 4.00 4 3 0 0 1 0 0 0 0 0
...............................................................TATATTGTCCTGTCACAGCAGT.......................................................................................................... 22 1 1 4.00 4 1 0 0 0 3 0 0 0 0
................................................................ACATTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 4.00 4 1 0 2 0 1 0 0 0 0
................................................................ATATTGTCCTGTCACAGCGG........................................................................................................... 20 1 1 4.00 4 0 0 3 0 1 0 0 0 0
.................................................................TGTTGTCCTGTCACAGCAGTA......................................................................................................... 21 1 1 4.00 4 0 4 0 0 0 0 0 0 0
................................................................ATATTGTTCTGTCACAGCAGGA......................................................................................................... 22 2 1 4.00 4 0 0 0 4 0 0 0 0 0
................................................................ATGTTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 4.00 4 0 0 4 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACATCAG........................................................................................................... 20 1 1 4.00 4 0 0 4 0 0 0 0 0 0
................................................................ATATTGTCCAGTCACAGCAGT.......................................................................................................... 21 1 1 4.00 4 0 1 3 0 0 0 0 0 0
................................................................ATATTGGCCTGTCACAGCAGGA......................................................................................................... 22 2 1 4.00 4 0 0 1 3 0 0 0 0 0
................................................................AGATTGTCCTGTCACTGCAGT.......................................................................................................... 21 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................ATCTTGTCCTGTCACAGCAGTT......................................................................................................... 22 2 1 4.00 4 1 1 2 0 0 0 0 0 0
...............................................................GATATTGTCCTGTCACAGCAGT.......................................................................................................... 22 0 1 4.00 4 0 0 0 0 4 0 0 0 0
................................................................ATATTGTCCTGTCACA............................................................................................................... 16 0 1 4.00 4 0 0 0 0 0 0 4 0 0
.............................................................ATCATATTGTCCTGTCACAGCAGTA......................................................................................................... 25 2 1 4.00 4 1 3 0 0 0 0 0 0 0
................................................................ATATTTTCCTGTCACAGCAG........................................................................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................ATAATGTCCTGTCACAGCAGTT......................................................................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACCTCAGT.......................................................................................................... 21 2 1 4.00 4 0 0 4 0 0 0 0 0 0
................................................................GTATTGTCCTGTCACAGCAG........................................................................................................... 20 1 1 4.00 4 0 0 4 0 0 0 0 0 0
................................................................AGATTGTCCTGTCAAAGCAGT.......................................................................................................... 21 2 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................ATATTATCCTGTCACAGCAGC.......................................................................................................... 21 2 1 4.00 4 3 1 0 0 0 0 0 0 0
................................................................GGATTGTCCTGTCACAGCAGTA......................................................................................................... 22 2 1 4.00 4 0 4 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCCTT.......................................................................................................... 21 2 1 4.00 4 0 0 2 2 0 0 0 0 0
................................................................ATATTGTCCCGTCACAGCAGC.......................................................................................................... 21 2 1 4.00 4 0 3 1 0 0 0 0 0 0
................................................................TGATTGTCCTGTCACAGCAGC.......................................................................................................... 21 3 2 3.50 7 5 2 0 0 0 0 0 0 0
................................................................ACATTGTCCTGTCACAGCAGC.......................................................................................................... 21 2 2 3.50 7 3 2 2 0 0 0 0 0 0
................................................................ATATTGTCCTGGCACAGCAGTG......................................................................................................... 22 2 1 3.00 3 0 0 0 3 0 0 0 0 0
................................................................ATATTGTCCTGTCACAGCCGC.......................................................................................................... 21 2 1 3.00 3 0 0 3 0 0 0 0 0 0
...................................................................TGGTCCTGTCACAGCAGTA......................................................................................................... 19 1 1 3.00 3 1 2 0 0 0 0 0 0 0
...........................................................................................................CTGTTGGGTCGGGGCATTAACA.............................................................. 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0
................................................................ATATTGTCCTGTCAAAGCTGT.......................................................................................................... 21 2 1 3.00 3 1 0 2 0 0 0 0 0 0
................................................................AGATTGTCCGGTCACAGCAGT.......................................................................................................... 21 2 1 3.00 3 2 0 1 0 0 0 0 0 0
................................................................AGATTGTCCTGTCACAGC............................................................................................................. 18 1 1 3.00 3 2 1 0 0 0 0 0 0 0
................................................................ATATTGACCTGTCACAGCAGC.......................................................................................................... 21 2 1 3.00 3 1 0 2 0 0 0 0 0 0
................................................................ATATTGTCCTGTCACAACAG........................................................................................................... 20 1 1 3.00 3 0 0 2 0 1 0 0 0 0
................................................................AGATTGTCCTGTCACAGTAGTA......................................................................................................... 22 2 1 3.00 3 1 2 0 0 0 0 0 0 0
................................................................ATATTGTCCTGGCACAGCAGGA......................................................................................................... 22 2 1 3.00 3 0 0 0 3 0 0 0 0 0
...........................................................................................................CTGCTGGGTCGGGGCATTAA................................................................ 20 0 1 3.00 3 0 1 0 1 0 0 1 0 0
................................................................ATATTGACCTGGCACAGCAGTA......................................................................................................... 22 2 1 3.00 3 0 0 0 3 0 0 0 0 0

Anti-sense strand reads

CTATGTATATATAGCTTAATGTATGCCGCAGCCTAGCCTCGTCTACTCTCCCGCGAACGGTAACTATAACAGGACAGTGTCGTCATAACATTGAATTAATATCGGATGACGACCCAGCCCCGTAATTGTAACAACTCGCGGTAACCGTTGTTTCTCTTCCTCTTCGATGTTTCGATGTTTCGATGCCTTTT

***********************************************.((((((((.((.((.((.(((((((((.((((((((((((((.....))))))..)))))))))).))))))).)).)).)).))))))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total M040

female body

 GSM444067

head

 V112

male body
..........................................................................................................TGACGACCCAGCCCCGTAATT................................................................ 21 0 1 4.00 4 2 1 1
...........................................................................................................GACGACCCAGCCCCGTAATT................................................................ 20 0 1 1.00 1 1 0 0
............................................................................................................................ATTGTGCGAACTCGCGGTA................................................ 19 3 9 0.11 1 1 0 0
.........................................................................................ATGGAATTAATATCAGATG................................................................................... 19 2 10 0.10 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
dp5 2:21158122-21158312 - dps-mir-1000 Known_mirbase GA--------------------------------T----AC------------------------ATA----T--ATATCGAATTACATACGGCGTCGGATCGGAGCAGATGAGAGGGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TA-TAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAGA-GAA-G-------------------GAGAAGCTACAAA------------------------------------GCTAC----------AAAGCTACGGAAAA
droPer2 scaffold_3:3932628-3932801 - dpe_6 confident GA--------------------------------T----AC------------------------ATA----T--ATATCGAATTACATACGGCGTCGGATCGGAGCAGATGAGAGGGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TA-TAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAGA-GCT-A-------C---------------------------------------------------------------------------AAAGCTACGGAAAA
droWil2 scf2_1100000004943:14638667-14638872 + dwi_7 confident GT--------------------------------G----TT------------------------AAA----C--ATTCCCAACTTCGTCCTGCTATCCATCT-----AACAAAAGAGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CA-TTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAGCG-GAA-A-------------------ACT---CTACTTC-------------TGATGATGATAATAATGATTCAAGTCAA----------AAGGGAACGAAAAA
droVir3 scaffold_12855:6810210-6810425 - dvi-mir-1000 Known_mirbase AC----------------------TGCATATATT-TGATATATACAGGCGGCATATATGTGTCTGATTG----TGA----------TATA--TCGTCG-ATCG------------TTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AA-TTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAAAAGC-----------C---------AGAAAAGCCACAAATCAGAGATGACAA--------------------------AT----------TCGGTTTCGGGAAG
droMoj3 scaffold_6540:25791519-25791694 + dmo_3 confident GA--------------------------------T----AT------------------------C------CATC----------TAT---C-----AATCAACGCGTCTATTATAGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC---AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGAA-GAA-A-------------------TCTAATCGAGTCG------------------------------------ACTATGCGGCAT-----A--CACAGAGGA
droGri2 scaffold_14906:2964670-2964844 - dgr_8 confident GA----------------------TAC-----TT-GGATAT------------------------ATA----TATA----------TATA-----TTTAATCG------------TTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC---AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGCAGCGAGAAGCAGAGA------------------------------------------------------------------AGCAAAAA
droAna3 scaffold_13340:3670400-3670558 - dan_4 confident AA------------CAGG-------AC-TATAAA-GGATAT------------------------AT----------------------G--GTGTCATAT-A-------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGGA-GG-------------------------------------------------------------------------------------AAAAGTCAAGGAAAA
droBip1 scf7180000396712:682199-682340 + GA--------------------------------T----AT------------------------A--------------------------CCGTCATAT-A-------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGGA-GG-------------------------------------------------------------------------------------AAAAGTCAAGGAAAA
droKik1 scf7180000302639:1623461-1623608 + AATGAAGCGCCAGGCAAATCCATAA----------GGATAT------------------------AT----------------------C--GCG-CAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGA----------------------------------------------------------------------------------------------------------
droFic1 scf7180000454055:1331146-1331312 - CA----------------------AAC-CAAATC-GGATAT------------------------AT----------------------T--CCATGGAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAAA-ACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACAG-GCG-GCGGCG-GCA----------------------------------------------------------------------AGGAAAAGCCGAGGAAAA
droEle1 scf7180000491280:3122804-3122960 - TA--------------------------------T----AT------------------------ATA----T--ATATATATGTATACA--CTACGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGGA-----------------------------------------------------------------------------------------AAACCCGAGG-AAA
droRho1 scf7180000779501:511372-511513 + AA----------------------A----------GGATAT------------------------AT----------------------G--TCACGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-G-------CC---------------------------------------------------------------------------------AGG-AAA
droBia1 scf7180000302136:2260801-2260969 - AG----------------------A-----------GATAG------------------------AT----------CCCAGAATACAT---CCATCGAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-GCGGCG-GCA----------------------------------------------------------------------AGGAAAACCCGAGG-AAA
droTak1 scf7180000415257:294612-294758 - GA--------------------------------T----AT------------------------ATA-CGCCATG----------TACA-----CAAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-G-------C--------------------------------------------------------------------------------GGCGG-CAA
droEug1 scf7180000409798:1136836-1136998 + AA----------------------A----------GGATAT------------------------ATA----TATA----------TATG--CCACAAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGTG-GCG-G-------CA----------------------------------------------------------------------AGGAAAACCCGAGG-AAA
dm3 chr3R:21414570-21414705 - dme-mir-1000 Known_mirbase TA--------------------------------T----AT------------------------A------CATA----------TATA--CCATGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------------------------------------------------------------------------------------------------
droSim2 3r:20926961-20927106 - dsi-mir-1000 Known_mirbase GA--------------------------------T----AT------------------------ATA----CATA----------TATA--CCGTGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TA-TAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------AC---------------------------------------------------------------------------------AGG-AAA
droSec2 scaffold_13:202508-202647 - dse_8 confident A----------------------------------GGATAT------------------------ATG----CATA----------TATA--CCATGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------------------------------------------------------------------------------------------------
droYak3 3R:25064539-25064673 + dya_5 confident GA--------------------------------T----AT------------------------T-----------------------------CGAATTGG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-G-------CC--------------------------------------------------------------------------------AGGAAAAA
droEre2 scaffold_4820:6627802-6627948 + der_7 confident A-------------------------------------TAT------------------------ATA---CCATG----------TATA--CCATGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------TC--------------------------------------------------------------------------------A-GGAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dp5
GA--------------------------------T----AC------------------------ATA----T--ATATCGAATTACATACGGCGTCGGATCGGAGCAGATGAGAGGGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TA-TAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAGA-GAA-G-------------------GAGAAGCTACAAA------------------------------------GCTAC----------AAAGCTACGGAAAASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21124735.00247357198221736583205510327150600102
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22124714.00247148160295153928820110938610280
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2012833.0028338104861583201029380046
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................2111600.0016000346510875373000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................221850.008500123103256028739006
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................191533.0053317017893682004
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................221343.003430165169525400146
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................231276.002760501139511162007
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231263.00263086371198110002
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201196.001960139437582001
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................211173.00173011823181120001
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................211139.001390154325920045
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................221116.0011602344620131000
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................191102.00102010001000001
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................18190.009017273000007
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................21169.006901102114221000
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19158.0058023431000000
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20154.0054092516301000
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................21145.0045043102241001
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22135.003500522620000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................23119.00190277300000
........................................................................................................................................................TTGTAAC--TTAAT--TA-TAGCCTA.......................................................................................................................................................21119.00190071911000
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................22115.00150820040001
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................19113.00130533200000
.................................................................................................................................................................................ACTGCTGGGTCGGGGCATTAAC..................................................................................................................................22113.00130050230003
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................21111.00110801011000
..................................................................................................................................ATATTGTCCTGTCACAGCTT...................................................................................................................................................................................20210.00200509051000
....................................................................................................................................ATTGTCCTGTCACAGCAGC..................................................................................................................................................................................1918.0080008000000
...................................................................................................................................TATTGTCCTGTCACAGCA....................................................................................................................................................................................1818.0080701000000
..................................................................................................................................ATATTGTCCTGTCACAGCG....................................................................................................................................................................................1918.0080004040000
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................2218.0080000710000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................2318.0080501010001
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................1927.50150505050000
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................2017.0070101040001
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................2017.0070004030000
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................1817.0070313000000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTA....................................................................................................................................1917.0070000340000
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1817.0070401101000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................2416.0060200031000
....................................................................................................................................ATTGTCCTGTCACAGCAGTATT...............................................................................................................................................................................2216.0060023010000
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................2015.0050005000000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTT....................................................................................................................................1915.0050100031000
..................................................................................................................................ATATTGTCCTGTCACAGCAGGT.................................................................................................................................................................................2215.0050001400000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTATT...............................................................................................................................................................................2415.0050112100000
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................2115.0050004010000
..................................................................................................................................ATATTGTCCTGTCACAGCATC..................................................................................................................................................................................2115.0050012020000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTG................................................................................................................................................................................2314.0040101010001
..................................................................................................................................ATATTGTCCTGTCACAGCAAC..................................................................................................................................................................................2114.0040004000000
.................................................................................................................................GATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................2214.0040400000000
..................................................................................................................................ATATTGTCCTGTCACA.......................................................................................................................................................................................1614.0040000000004
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAA...................................................................................................................................2013.0030010100001
droPer2
GA--------------------------------T----AC------------------------ATA----T--ATATCGAATTACATACGGCGTCGGATCGGAGCAGATGAGAGGGCGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAAC--TTAAT--TA-TAGCCTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGCCATTGGCAACAAAGA-GCT-A-------C---------------------------------------------------------------------------AAAGCTACGGAAAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21154875.0054875745134201250240531835
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................2214888.00488826529811691050206937
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2014244.00424478188121162279212
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2211699.0016990266304134320
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................191914.0091401643475452
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................231452.00452019141472684
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................211418.00418500643472
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................211227.002271201281860
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211157.00157010391161
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231120.00120026225670
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................22193.009301415730
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................20161.006103406210
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................22155.0055120152611
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................20132.00320005270
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................21128.00280211240
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................20121.00211008120
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19119.00190170020
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................18119.00191402120
..................................................................................................................................ATATTGTCCTGTCACAGCATG..................................................................................................................................................................................21117.00170002150
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................23116.00160302110
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19113.0013000580
..................................................................................................................................ATATTGTCCTGTCACAGCATC..................................................................................................................................................................................21113.00130003100
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22113.0013011380
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20112.0012010290
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................19212.00240002220
..................................................................................................................................................................................CTGCTGGGTCGGGGCATT.....................................................................................................................................18110.0010410050
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................22110.0010000280
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................2119.009503100
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................2419.009000270
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................2319.009000270
..................................................................................................................................ATATTGTCCTGTCACAGCAGGT.................................................................................................................................................................................2218.008000170
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2118.008030230
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................2017.007041020
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................2317.007010240
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTT....................................................................................................................................1917.007000160
.................................................................................................................................................................................ACTGCTGGGTCGGGGCATTAAC..................................................................................................................................2216.006101220
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2216.006050010
..................................................................................................................................ATATTGTCCTGTCACAGCTT...................................................................................................................................................................................2036.00180005130
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1816.006010230
..................................................................................................................................ATATTGTCCTGTCACAGCAGCC.................................................................................................................................................................................2216.006000060
droWil2
GT--------------------------------G----TT------------------------AAA----C--ATTCCCAACTTCGTCCTGCTATCCATCT-----AACAAAAGAGAGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATAGTAACA-TAT-T--CA-TTTCGTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCTGTGGCAACGAGCG-GAA-A-------------------ACT---CTACTTC-------------TGATGATGATAATAATGATTCAAGTCAA----------AAGGGAACGAAAAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21193112.00931124343114816611791868042
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22154414.00544143931886433599213562
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................20118088.00180889449567413607671
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1914262.004262247514383922
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2311526.00152622293700772
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2211162.00116235157361069
........................................................................................................................................................TAGTAACA-TAT-T--CA-TTTCGTA.......................................................................................................................................................211626.006261411041272
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................211486.004863101335137
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................221414.00414778129830
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................211399.0039936002631
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231318.003183559163160
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211272.002723025262
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................181225.0022520300616
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201178.001785763589
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................211175.0017536614362
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................201152.001521440008
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19194.00940731074
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19168.006810460012
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20165.00650303428
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAG.........................................................................................................24158.0058520015
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC..................................................................................................................................21152.00521040335
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................22137.00372101816
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22135.00351000178
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20130.0030410025
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGC........................................................................................................25129.0029221042
............................................................................................................AACAAAAGAGAGCTTGCCAGTG.......................................................................................................................................................................................................22125.00250011212
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................23125.0025430414
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGA........................................................................................................25122.0022220000
.................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC..................................................................................................................................22121.0021141042
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGA..........................................................................................................23120.0020200000
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................19116.001670009
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................18115.001524009
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................22115.001514055
.............................................................................................................ACAAAAGAGAGCTTGCCAGTG.......................................................................................................................................................................................................21114.0014000212
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................20113.0013100111
..................................................................................................................................................................................CTGCTGAGCCGGGGCATT.....................................................................................................................................18113.0013130000
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGCG-G.....................................................................................................27113.001350080
..................................................................................................................................ATATTGTCCTGTCACAGCG....................................................................................................................................................................................19112.001280004
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................19110.001011026
................................................................................................................AAAGAGAGCTTGCCAGTG.......................................................................................................................................................................................................1819.00900036
..............................................................................................................................................................................CGTACTGCTGAGCCGGGGCATT.....................................................................................................................................2219.00980010
..................................................................................................................................ATATTGTCCTGTCACAGCC....................................................................................................................................................................................1919.00930006
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................2318.00830005
...........................................................................................................................................................TAACA-TAT-T--CA-TTTCGTA.......................................................................................................................................................1818.00850030
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................2117.00700061
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAA...................................................................................................................................2017.00700070
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAAC............................................................................................................2117.00770000
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2117.00700007
....................................................................................................................................ATTGTCCTGTCACAGCAGTATA...............................................................................................................................................................................2216.00600033
....................................................................................................................................ATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2116.00601014
..................................................................................................................................ATATTGTCCTGTCACAGT.....................................................................................................................................................................................1816.00600024
...................................................................................................................................TATTGTCCTGTCACAGCA....................................................................................................................................................................................1816.00605001
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGAA-......................................................................................................2615.00550000
...................................................................................................................................TATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2215.00503002
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGCG-GA....................................................................................................2815.00550000
.........................................................................................................................................................AGTAACA-TAT-T--CA-TTTCGTA.......................................................................................................................................................2015.00501040
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTA....................................................................................................................................1915.00530011
..............................................................................................................CAAAAGAGAGCTTGCCAGTG.......................................................................................................................................................................................................2015.00500005
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGA................................................................................................................................................................................2315.00511003
.........................................................................................................................................................................A-TTTCGTACTGCTGAGCCGGGGCATT.....................................................................................................................................2615.00550000
....................................................................................................................................ATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2114.00401021
..............................................................................................................................................................................CGTACTGCTGAGCCGGGGCATTAAC..................................................................................................................................2514.00440000
...........................................................................................................................................................TAACA-TAT-T--CA-TTTCGTACTGCTGAGCC.............................................................................................................................................2814.00440000
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1814.00411002
...................................................................................................................................................................................TGCTGAGCCGGGGCATTAACA.................................................................................................................................2114.00412010
................................................................................................................................................................................TACTGCTGAGCCGGGGCATT.....................................................................................................................................2014.00440000
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGAA-A.....................................................................................................2713.00330000
...............................................................................................................................................................................GTACTGCTGAGCCGGGGCATTA....................................................................................................................................2213.00320010
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGCA-A.....................................................................................................2713.00330000
........................................................................................................................................................TAGTAACA-TAT-T--CA-TTTCGT........................................................................................................................................................2013.00330000
........................................................................................................................................................................................................TTGTTGAGCGTCTGTGGCAACGAGG........................................................................................................2513.00330000
droVir3
AC----------------------TGCATATATT-TGATATATACAGGCGGCATATATGTGTCTGATTG----TGA----------TATA--TCGTCG-ATCG------------TTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTA-CGTTAAGC--AA-TTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAAAAAGC-----------C---------AGAAAAGCCACAAATCAGAGATGACAA--------------------------AT----------TCGGTTTCGGGAAGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21141284.00412848876711161205030011200045712689115427843496132972646327950234232111811210192131100001017413710124620142885134301394002031274176001202
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22115885.00158858544254629120200000000189396458413498994371860148603203137514000008001400060685680161811691351465749652112858012003130323510000
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2018105.008105305269595039000000000021919461108185671113350010001313011000000000000023052320171372547630001004138233000100
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2311810.00181002371001000000004271819628412888012525400110310300201200000000000000000001012144303000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2211688.0016884979600000000001621157714117067011820711000300000000000000000000000000000284843300000001000000000
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1911001.00100141114510000000000503718204121043360000010000000000000000000000000000012563300000004000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231749.0074902461900000000001467735934842076132000002020000000000000000000000000003422000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................211498.00498783220400000000003522410220000000000000000000000000000000000005168800000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................211170.0017013103260000000000040031002000000000000000000000000000000100000332000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................181141.00141974420000000000433241038000000000000000000000000000000000122017000000002000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211141.00141011200000000000781631030000000000000000000000000000000000000092700000000000000000
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201111.00111008120000000000341310003000000000000000000000000000000000000012100000000000000000
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................22198.0098054150000000000621571043000000000000010000000000141322000009812000000000000001100
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................22188.00880101300000000001223863022000000000000000000000000000001000002725100000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................20187.0087563000000000000000000001000000000000000000000000000000000000018000000000000000000
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19179.007907710000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TTGTA-CGTTAAGC--AA-TTG-GTA.......................................................................................................................................................21171.00710002600000000001111010020000000000000000000000000412110010011160000000100000000000
........................................................................................................................................................................................................TTGTTGAGCGTCGTTAGCAACC...........................................................................................................22167.006705900000000000000010000100000000000000000000000000010000001200000010000000010000
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................21160.006000404000000000050210001300000000000000000000000000000000000103000000000000000000
........................................................................................................................................................................................................TTGTTGAGCGTCGTTAGCAAC............................................................................................................21153.005314000000000000040001102200000000000000000000000000000000000001000000000000010000
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19147.004700160000000000043052103300000000000000000000000000000000000008200000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................24146.0046001000000000001630111103400000000000001000000000000000000000004001000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................23139.00390020000000000055270303900000000000000000000000000000000000003000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22135.00352652000000000030112000300000000000000000000000000000000000037000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20131.003101100000000000112203051000000000000000000000000000000000000014000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................23129.00290020000000000052364000400000000000000000000000000000000000003000000000000000000
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20121.00210029000001000022020001100000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC..................................................................................................................................21116.00160102000000000010001100000000000000000000000000001001101000312000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................20116.001601100000000000100000001000000000000000000000000000000000000010200000000000000000
..............................................................................................GTCG-ATCG------------TTGCGCTTGCCAGTG.......................................................................................................................................................................................................23113.00130700000000000020000000000000000000000000000000000000000000111100000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................23112.00120013000000000020000101000000100000000000000000000000000000111000000000000000000
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................19112.00120050000000000010030100000000000000000000000000000000000000002000000000000000000
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................18112.001210100000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCACC..................................................................................................................................................................................21111.001100000000000000000000000000000000000000000000000000000000000011000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................19111.00112310000000000000000000000000000000000000000000000000000000005000000000000000000
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................22110.00100050000000000001020000100000000000000100000000000000000000000000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................22110.00100000000000000000000000200000000000000000000000000000000000008000000000000000000
....................................................................................................................................ATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2119.0090010000000000001002200200000000000000000000000000000000000001000000000000000000
........................................................................................................................................................TTGTA-CGTTAAGC--AA-TTG-GT........................................................................................................................................................2019.0090010000000000000001000000000000000000000000000000000000000106000000000000000000
.................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC..................................................................................................................................2219.0090113000000000011000100000000000000000000000000000000000000001000000000000000000
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2118.0080060000000000000000000000000000000000000000000000000000000001100000000000000000
...................................................................................................ATCG------------TTGCGCTTGCCAGTG.......................................................................................................................................................................................................1918.0080010000000000000010000000000011200000000000000000000000000002000000000000000000
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1818.0080030000000000012110000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTGTTGAGCGTCGTTAGCAACCA..........................................................................................................2317.0070101000000000001001003000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATTGTCCTGTCACAGCA....................................................................................................................................................................................1816.0060060000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCC....................................................................................................................................................................................1916.0060100000000000000010001000000000000000000000000000000000000003000000000000000000
................................................................................................................................................................................TACTGCTGAGCCGGGGCATT.....................................................................................................................................2016.0061000000000000010001000100000000000000000000000000000000000001100000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCATC..................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000005000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTG................................................................................................................................................................................2315.0050000000000000000100000100000000000000000000000000000000000002100000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTATT...............................................................................................................................................................................2415.0050000000000000010111100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TACTGCTGAGCCGGGGCATTAAC..................................................................................................................................2314.0040100000000000000001001000000000000000000000000000000000000100000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCG....................................................................................................................................................................................1914.0041100000000000000000000000000000000000000000000000000000000011000000000000000000
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTT....................................................................................................................................1914.0040000000000000010000000000000000000000000000000000000000000003000000000000000000
..................................................................................................................................................................................CTGCTGAGCCGGGGCATT.....................................................................................................................................1814.0040211000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................TCG-ATCG------------TTGCGCTTGCCAGTG.......................................................................................................................................................................................................2214.0040000000000000000001000000000000000000000000000000000000000003000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................2314.0040000000000000000000100100000000000000000000000000000000000002000000000000000000
......................................................................................................................................TGTCCTGTCACAGCAGTA.................................................................................................................................................................................1814.0040000000000000000000101100000000000000000000000000000000000010000000000000000000
........................................................................................................................................................................................................TTGTTGAGCGTCGTTAGC...............................................................................................................1814.0040200000000000000001000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................2113.0030000000000000010000000000000000000000000000000000000000000002000000000000000000
droMoj3
GA--------------------------------T----AT------------------------C------CATC----------TAT---C-----AATCAACGCGTCTATTATAGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTAAA-TTAAGC---AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTCGTTAGCAACCAGAA-GAA-A-------------------TCTAATCGAGTCG------------------------------------ACTATGCGGCAT-----A--CACAGAGGASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................221159680.001596801570745713711732147406144
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21174825.0074825264514301924326365216523490
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2018361.00836112251930123479523103
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................2114145.004145264715139372
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2213541.0035412444812171746163123
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1911337.0013375745207311510
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................231759.00759755916024021114
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231741.007411531056714492
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................201723.0072362007150
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................221702.0070212139376040
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................221637.0063749913175022
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................211619.00619993335110
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201279.002791931411682
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................211238.00238407780752
........................................................................................................................................................TTGTAAA-TTAAGC---AATTG-GTA.......................................................................................................................................................211206.00206015001910
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC..................................................................................................................................211189.0018927141741
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211139.0013963457771
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................191116.0011617053847
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................221106.001065937820
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................191104.0010410300100
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................23188.00884038730
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................19172.00722110680
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................20145.004530212010
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................18143.0043401112160
..................................................................................................................................ATATTGTCCTGTCACAGCAGGC.................................................................................................................................................................................22138.00380110360
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................22128.00280871120
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................21125.00252300200
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................20124.00240019140
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTG................................................................................................................................................................................23124.00244051311
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................23123.0023812750
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................23122.0022517810
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................21119.00190031150
.................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC..................................................................................................................................22119.00191100161
......................................................................................................................................TGTCCTGTCACAGCAGTA.................................................................................................................................................................................18118.00180100170
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20118.00183031011
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................18118.00181201230
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................18118.00186001110
...................................................................................................................................TATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................22117.00171500020
...................................................................................................................................TATTGTCCTGTCACAGCAGC..................................................................................................................................................................................20117.00171000160
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................19117.00170021500
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................24115.0015417210
..................................................................................................................................ATATTGTCCTGTCACAGCAGTATT...............................................................................................................................................................................24115.0015400650
..................................................................................................................................ATATTGTCCTGTCACAGCAGGT.................................................................................................................................................................................22115.0015018510
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAA...................................................................................................................................20113.0013032080
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACAA................................................................................................................................23112.00120100110
..................................................................................................................................ATATTGTCCTGTCACAGCTA...................................................................................................................................................................................20112.00120000120
droGri2
GA----------------------TAC-----TT-GGATAT------------------------ATA----TATA----------TATA-----TTTAATCG------------TTGCGCTTGCCAGTGATATTGTCCTGTCACAGCAGTATTGTTAA-TTAAGC---AATTG-GTACTGCTGAGCCGGGGCATTAACATTGTTGAGCGTTGCTAGCAACTAAAAAGCGAGCAGCGAGCAGCGAGAAGCAGAGA------------------------------------------------------------------AGCAAAAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................211731.00731371360
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................221240.0024022911
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................20190.0090864
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................20126.0026260
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................23124.0024240
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................21118.0018180
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................22116.0016151
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................23112.0012102
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19110.0010100
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1917.00770
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1813.00330
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................1913.00330
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAACA.................................................................................................................................2212.00211
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................1912.00220
...................................................................................................................................TATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2212.00220
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................1812.00220
.................................................................................................TAATCG------------TTGCGCTTGCCAGTG.......................................................................................................................................................................................................2111.00110
...................................................................................................................................TATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................2311.00110
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2111.00110
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2211.00110
....................................................................................................................................ATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2011.00110
.................................................................................................................................................................................ACTGCTGAGCCGGGGCATTAAC..................................................................................................................................2211.00110
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................2411.00110
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................2111.00101
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................2111.00101
...................................................................................................................................TATTGTCCTGTCACAGCA....................................................................................................................................................................................1811.00110
.................................................................................................................................GATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................2311.00110
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................2011.00110
..................................................................................................................................................................................CTGCTGAGCCGGGGCATTAAC..................................................................................................................................2111.00110
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................1811.00110
..................................................................................................................................ATATTGTCCTGTCACAGCTA...................................................................................................................................................................................2020.50101
droAna3
AA------------CAGG-------AC-TATAAA-GGATAT------------------------AT----------------------G--GTGTCATAT-A-------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGGA-GG-------------------------------------------------------------------------------------AAAAGTCAAGGAAAASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21155950.0055950246296523115698240834186
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22111821.0011821124519633851264666898
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2018774.00877412233681987525468
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2215797.00579714321973584620
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1912164.0021641103147541571
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2311244.0012448111132307902
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211791.0079120018838644
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................211477.004773218113910106
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231278.0027811070270134
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGA................................................................................................................................................................................231234.00234120062214
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201219.002191722014229
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................231171.001713600215109
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................201146.00146800153120
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTG................................................................................................................................................................................231142.00142250044271
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................211111.0011183612019
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................211104.0010423167922
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19190.00908000505
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................24189.008986313059
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGG................................................................................................................................................................................23184.00847008069
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22183.0083140116151
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................23177.007790020345
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................22148.004862452110
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................18145.004563118017
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................22145.004527023112
..................................................................................................................................ATATTGTCCTGTCACAGCAGAT.................................................................................................................................................................................22144.00440006137
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19144.004411104127
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTGA...............................................................................................................................................................................24137.00373003031
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20134.003430016114
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................21133.00331224105
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTAG...............................................................................................................................................................................24129.00294003121
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20128.00287130008
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................22123.00230007016
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCG................................................................................................................................................................................23121.00211005114
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA...............................................................................................................................................................................24121.00211002018
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................19220.504130122015
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................23116.0016200806
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................22115.00151201002
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................18114.0014700007
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................20114.0014020606
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................23113.0013430402
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTGG...............................................................................................................................................................................24111.0011300008
..................................................................................................................................ATATTGTCCTGTCACAGCATG..................................................................................................................................................................................21110.00100001000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAGA...............................................................................................................................................................................2419.009200106
...................................................................................................................................TATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2219.009800001
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAGT..............................................................................................................................................................................2518.008100214
..................................................................................................................................ATATTGTCCTGTCACAGCAGAG.................................................................................................................................................................................2218.008100403
..................................................................................................................................ATATTGTCCTGTCACAGCAGGT.................................................................................................................................................................................2217.007000502
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGAA...............................................................................................................................................................................2417.007200005
....................................................................................................................................ATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2017.007100204
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAG...............................................................................................................................................................................2417.007201112
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGC................................................................................................................................................................................2316.006000105
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTC................................................................................................................................................................................2316.006000402
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1816.006310101
........................................................................................................................................................TTGTAATTCTATACTATA-TAGCTTA.......................................................................................................................................................2516.006012003
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................2116.006000303
..................................................................................................................................ATATTGTCCTGTCACAGCC....................................................................................................................................................................................1916.006000600
droBip1
GA--------------------------------T----AT------------------------A--------------------------CCGTCATAT-A-------------GACGCTTGCCGATGATATTGTCCTGTCACAGCAGTATTGTAATTCTATACTATA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGGA-GG-------------------------------------------------------------------------------------AAAAGTCAAGGAAAASizeHit CountTotal NormTotal
No Reads
droKik1
AATGAAGCGCCAGGCAAATCCATAA----------GGATAT------------------------AT----------------------C--GCG-CAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGA----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CA----------------------AAC-CAAATC-GGATAT------------------------AT----------------------T--CCATGGAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGAAA-ACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGACAG-GCG-GCGGCG-GCA----------------------------------------------------------------------AGGAAAAGCCGAGGAAAASizeHit CountTotal NormTotal
No Reads
droEle1
TA--------------------------------T----AT------------------------ATA----T--ATATATATGTATACA--CTACGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATATTTTA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGGA-----------------------------------------------------------------------------------------AAACCCGAGG-AAASizeHit CountTotal NormTotal
No Reads
droRho1
AA----------------------A----------GGATAT------------------------AT----------------------G--TCACGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-G-------CC---------------------------------------------------------------------------------AGG-AAASizeHit CountTotal NormTotal
No Reads
droBia1
AG----------------------A-----------GATAG------------------------AT----------CCCAGAATACAT---CCATCGAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAC--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-GCGGCG-GCA----------------------------------------------------------------------AGGAAAACCCGAGG-AAASizeHit CountTotal NormTotal
No Reads
droTak1
GA--------------------------------T----AT------------------------ATA-CGCCATG----------TACA-----CAAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-G-------C--------------------------------------------------------------------------------GGCGG-CAASizeHit CountTotal NormTotal
No Reads
droEug1
AA----------------------A----------GGATAT------------------------ATA----TATA----------TATG--CCACAAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAATACTATATCTTA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGTG-GCG-G-------CA----------------------------------------------------------------------AGGAAAACCCGAGG-AAASizeHit CountTotal NormTotal
No Reads
dm3
TA--------------------------------T----AT------------------------A------CATA----------TATA--CCATGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................211490974.0049097400009330001543650635062100024003183310326653896236283100321112221080684500000432023000000000000000000001143908210031719164518482801126331096469611926701191173127228610342841178039971123465795957429168231854547519150000000000178493074382372503000004050781062413496076431053936567332297591111514203128131866805604311524730132617000240158000000240003002152633833627372817171428102014200027872387310687932311561434173815111950281052638906534212851826249692977130200697322206133741243683052180350455509858518274125165664432011452932135922911604132960134113211824082151674101639413411875077431756811833139812592751724110
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................221128301.001283010000301021728750601211016900100000576280144132854247645500100011017114322100003716220000000000000000000004531221528950456442771922639925810511817941367234122011801553675249685240317021491092313534626143775091254982739147300000000001910624211311041000000000000006791837605031142063827194929159535693109226736414315115701020114128610400040700000000000000000021187032495039242861465628984500142512350226679231068531007163170011438822032460161416101339172121310112861129589720842822525218101074701267127937961617528906100131002818687638833823225830
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................20179086.0079086000016100010500120017400001010218381588138211112000000000000001000000543000000000000000000000503023004133638013165111900247071003145194737017914214120117883133862075380283314410000000000102000000000000000000000004244564702012127110219825719222766157212602208003004695303000020100000000000000000000143821121200214001810013412133101235712600302400013091000445010500010000000000020332203936457780761631827137120234101671620023526512001010004143027514303525113210
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................19114360.00143600000000000000002010000000010212161871591100000000000000000000001230000000000000000000001000000200040120120000160000700010000121701473190084331144138520000000000000000000000000000000000002837740211535018218201164312349357000002151010000000000000000000000000010000000010000100073023721230047319703530000018020000100021000000002000000102651509995173602157030000380182900000300000000002308883425021000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................23112209.001220900001000001040000010000030000000000000000000000000000000000000000000000000000000081066001842830524483171071728110026713182222441502881439035191094546525600000000000030000000100000000000000010281620082731254941226679998522103000000864308000000700000001000000000110033232246000284002521011301001743106600000440000010000100100900110000001121277136242631411900010034028370000017000000000014650100000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2219984.00998400001000000000100400000000000000000000000000000000000000000000000000000000000000800200011200800600000023000115120100004155422240353914354503949000000000010100000004000000000200000347628026020140259111955754151238120000057900300000000000000000000000001011220000110002100810291578000961920831000066200027010010000020000001000354954759611081153480101008807281000017720000000001394120102712000110
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................2116173.00617300000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000001000010300004010000000831706360263143200000000000000000000000000000000000012910808700848016050579981180000013500000000000000000000000000000000000000000000000670349100015170110000017100021000000000000000000000366714079922131814517061001125112894000002000000000012200001000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTATC...............................................................................................................................................................................2413787.003787000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000024121373000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................2112745.002745000000000001000001000000000000000000000000000000000000000000000000000000000000002000000000031040000003000130000000001361604090172810000000000000200000100000000000000000138162091002122016190243015000002020000000000000000000000000000000000000000000010011102272000162206000001000000200000000013000000000011842642152092544619031200177087820000060000000000210063223000000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................2212492.0024920000100368030000001000000000110000000000000000000000000000000000000000000000000001098270770115229522050300142917400014217221285556350138160501103086000000000001426000000000000000000000089920322024295151232054150000083000000000000000000000000000000010000014200000006158001000041203000001100004000000000000000000000007577406521022393010000001611000002001000000028344702000100
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................2112423.0024230000300000020000000000000000000000000000000000000000000000000000000000000000000040000001000800400000022000100000000014110110729150540000000000000000000000000000000000006111204032133822111381332113100008800100000000000000000000000000000000000000207300210737200015730500000100000000000000000100000000001160248254165296201000061043530000060000000000227031331000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2312176.00217600002000000000000000000000004212617401000000000000000000000017811000000000000000000000000000070004031003000353000016170300010404010237011010110000000000000000000000000000000000001622520931048203313741363205200000221000000000000000000000000000000000100000000037140043037000011140400000000000000000000000000000000007810170321000000003400000000000000000611000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGATC................................................................................................................................................................................2311658.00165800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001159499000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................2211146.00114600000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000021000001100002010000101217252080451615916575000000000000000000000000000000000000936204773612191301133000000330000000000000000000000000000000000000000000300041022110001512050000030000010000000000100030000000282331661125201000010084000002000000000024250021000000
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201851.0085100002000000100100300000000001249470000000000000000000000000000000000000000000000003000000400040580000101010001231120100039130901531301831927000000000000000000000000000000000000458203000860463282224000002500000000000000000000000000000000010000000000000020020000240100000300000000000001000000000100002514102601010000006019000000000000000025641110000000
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................211754.00754000010000001002000000000000137244236000000000000000000000000000000000000000000000000000100014203302310100110000020360600000154010216661102101300000000000000000000000000000000000021640302015164624468152211600000270000000000000000000000000000000000000000000200014001000011010000000000020000000000000000000000241201000000001000000001000000000001510000000000
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................191731.00731000000000000000000000000000006679211000000000000000000000000000000000000000000000000000000002000400000170000100000000000010000010110000000000000000000020000000000000009380361031076760242281000002600000000000000000000000000000000000000000000000750010000020000000100000000000000100000000000002018304506630000007041000000000000000002431001000000
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................181667.00667000000000000000101000000000165118859000000000000000000000000000000000000000000000010000000001001100000000000401000004065030021031501001100000000000000000000000000000000371056268128692963828000002400000000000000000000000000000000000000000000000200210000014000000000000010001000000000000000000212746731201000000000000000000000000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................241599.0059900002000000300000000000000000000000000000000000000000000000000000000000000000000000000000000026010000130001800010000010101080170104200000000000000000000000000000000000064830360017360310500991100000380000000100000000000000000000000100000010000100010002000050020000020000000000000000100000000000310990011000000100200000000000000000000000000000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................211455.004550000200011021000000000000002500000000000000000000000000001000000000000000000000012231400100020610000151900018650271022000002021201023000000000011190000000000000000000000059043244035321500000170000000000000000000000000000000100000010000000018140010000000000000400001000000000000000000000002514953740200000000040000000000000000102031020000000
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................201454.004540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000010000000001124710000000000000000000000000000000000000405901600320401318000000100000000000000000000000000000000000000000000000000033000041910000001000000000000000000000000000020211010500100000002021000000000000000002201100000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................221432.00432000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010100000000100100001001013600034170403300000000000000000000000000000000000036570313371527355254840000035000000000000000000000000000000000000000000000003000100004703000001000000001000000000000000000027680000000000000100000000000000000600000000000
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................201368.003680000000000001000000000000009300000000000000000000000000000100000000000000000000010003000000000000000000000500010000000000012010020000000000000000000000000000000000001527027119563265142632900000010000000000000000000000000000000000000000000000004100100001201000001000000000000000000000000000013140200000000000000000000000000000100000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................201335.0033500000000010000000000000000000000000000000000000000000000000000000000000000000000200000000004000000000100002000000000141000200040560000000000000000000000000000000000001963016011717022026000000210000000000000000000000000000000010000000000040000013000041802000000000000000000000000000000000011683500000000001000000000000000000011400000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................231319.003190000100000000000010000000000000000000000000000000000000000000000000000000000000010000000001000100000010000000000000011000115010040000000000000000000000000000000000002947015011333144020123100000350000000000000000000000000000000000000000000000001011000013020000010000000000000000000000000000410120100000000000300000000000000000301100000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................231298.002980000100000000000000000000000000000000000000000000000000000000000000000000000000010001000000000001001000000530010000035201001218175000000000000000000000000000000000000195601410212114051120000001000000000000000000000000000000000000110000003114000000300003201000000000000000000000010000000000021080020000000100000000000000000000300000000000
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................191224.00224000000000000001001000000000000151501000000000000000000000000000000000000000000000000001000000102400000000000301000004023200013207161000000000000000000000000000000000000014360110002212004000000002000000000000000000000000000000000000000000000000000000000200000000000001000000000000000000000011230000000000000000000000000000000000000000000
........................................................................................................................................................TTGTAACACTATAT--TA-TAGTTTA.......................................................................................................................................................231186.00186000000000000000000000000000115011310000000000000000000000000000000000000000000000000002000000000200000090000000000100021010045010110000000000000000000000000000000000002518080101701161188000000000000000000000000000000000000000000000000000004000000001000000000000000000000000000000000000000015700010000000000000100000000000100000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................231180.001800000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000100000000000000043200001301801125000000000000000000000000000000000000111801100220000000000002000000000000000000000000000000000000000000000000000400001201000000000000000000000000000000000036160000000000000000000000000000000300000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................231170.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100030000000001000000000000003000010005014000000000000000000000000000000000000153801400470401502110000013000000000000000000000000000000000000000000000000000010001000000001000000000000000000000000000011850000000000000000000000000000000100000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................201152.00152000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000008000010001211011000000000000000000000000000000000000212107000400030200000070000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000343190000000000101000000000000000000900000000000
..................................................................................................................................ATATTGTCCTGTCACAGCC....................................................................................................................................................................................191143.001430000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000318120400000504800000000000000000000000000000000000086031000000302000000000000000000000000000000000000000000000000000000000027000001601000000000000000000000000000000000013191000000000001100000000000000000300000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGGT.................................................................................................................................................................................221128.001280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000006503000400028037000000500000000000000000000000000000000000000000000000000000000110100000000000000000000000000000000001013840000000000000000000000000000000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCATG..................................................................................................................................................................................211124.001240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000020520000000000000000000000000000000000001490200100000010000000000000000000000000000000000000000000000000000000000110001001000001000000000000000000000000000081682101073000000501300000000000000000000000000000
droSim2
GA--------------------------------T----AT------------------------ATA----CATA----------TATA--CCGTGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTTACACTATAT--TA-TAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------AC---------------------------------------------------------------------------------AGG-AAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................20120599.0020599177873353033750203001161902001000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22113350.0013350288059151870533017435886304451903002
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................2119946.009946439010622486302345977475754142110100
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1913715.00371549562483311500361000000
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................1812697.00269747196046216300010100000
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................211489.00489458101910000100000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................211447.00447388163520001000500000
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................201359.003593522500000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231308.0030813200528500100200000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................221187.0018717074108003008201100
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................231168.00168190050000464215401000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................211101.0010113161007000101800000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................22191.00916922200000101500000
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20142.0042001103700000300000
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................21130.0030302601000410400000
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................18129.0029700002200000000000
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19128.0028171041500000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22128.0028190300000000600000
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................20123.002330160500340100000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATT.....................................................................................................................................18122.0022122400400000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................22120.002091000000100900000
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................21117.0017131000000010200000
...................................................................................................................................TATTGTCCTGTCACAGCA....................................................................................................................................................................................18115.0015000011400000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................24114.001420100000640100000
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19113.0013000001100100100000
..................................................................................................................................ATATTGTCCTGTCACAGCG....................................................................................................................................................................................19113.0013130000000000000000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGC...............................................................................................................18111.001180300000000000000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAAC............................................................................................................21111.001180300000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTATT...............................................................................................................................................................................24110.0010000001000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................1929.5019190000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................2019.00980100000000000000
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2217.00700000600000100000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAA...................................................................................................................................2016.00601500000000000000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTA....................................................................................................................................1916.00610100400000000000
..................................................................................................................................ATATTGTCCTGTCACAGCC....................................................................................................................................................................................1915.00550000000000000000
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................1915.00500000100010300000
........................................................................................................................................................TTGTTACACTATAT--TA-TAGTTTA.......................................................................................................................................................2314.00400100000000300000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATA.....................................................................................................................................1814.00440000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCTT...................................................................................................................................................................................2024.00880000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................2314.00420010000000100000
....................................................................................................................................ATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2113.00300000300000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................2313.00300000000000300000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACG...........................................................................................................2213.00330000000000000000
.....................................................................................................................................................................................CTGGGTCGGGGCATTAACA.................................................................................................................................1913.00320100000000000000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCA..............................................................................................................1913.00330000000000000000
..................................................................................................................................ATATTGTCCTGTCACA.......................................................................................................................................................................................1613.00300000000120000000
..................................................................................................................................ATATTGTCCTGTCACAGG.....................................................................................................................................................................................1813.00330000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................2212.00200000000000200000
.....................................................................................................................................................................................CTGGGTCGGGGCATTAAC..................................................................................................................................1812.00201100000000000000
.....................................................................................................................................TTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2012.00200000200000000000
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................2112.00200000000200000000
.....................................................................................................................................TTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2012.00220000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAAG..................................................................................................................................................................................2112.00220000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGG................................................................................................................................................................................2312.00220000000000000000
..................................................................................................................................ATATTGTCCTGTCACAGT.....................................................................................................................................................................................1812.00220000000000000000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACG.................................................................................................................................2212.00200200000000000000
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1811.00100000100000000000
....................................................................................................................................ATTGTCCTGTCACAGCAGTATTG..............................................................................................................................................................................2311.00100000100000000000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACA...........................................................................................................2211.00100100000000000000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCG..............................................................................................................1911.00110000000000000000
................................................................................................................................................................................TACTGCTGGGTCGGGGCATT.....................................................................................................................................2011.00110000000000000000
...................................................................................................................................TATTGTCCTGTCACAGCAC...................................................................................................................................................................................1911.00110000000000000000
droSec2
A----------------------------------GGATAT------------------------ATG----CATA----------TATA--CCATGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGTTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21145317.00453178114696604533765
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22110064.001006442013659063602
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2015979.005979351204755349
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1913172.003172230193130
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2211908.0019083377191779
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................231480.00480311597337
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211401.004014121384
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201389.00389732934253
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................211209.0020940850111
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................221179.001790615914
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................21183.008305870
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................23164.0064240832
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19157.0057512427
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19147.0047200027
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20146.004621358
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................22136.003607524
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................18136.003640131
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................21128.002800028
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................21128.0028120214
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................24127.002703024
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20122.002210021
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22116.001600124
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................21115.001500132
..................................................................................................................................ATATTGTCCTGTCACAGT.....................................................................................................................................................................................18110.001000010
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................2019.0092106
...................................................................................................................................TATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2218.0082006
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................2318.0082015
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTA....................................................................................................................................1918.0081061
...................................................................................................................................TATTGTCCTGTCACAGCA....................................................................................................................................................................................1817.0072014
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................2317.0071015
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................2116.0063012
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................2216.0064020
........................................................................................................................................................TTGTAACACTATAT--TA-TAGTTTA.......................................................................................................................................................2315.0050041
..................................................................................................................................ATATTGTCCTGTCACAGCT....................................................................................................................................................................................1924.5090009
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTT....................................................................................................................................1914.0040004
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................1914.0041012
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................2314.0043001
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................1814.0042002
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGG................................................................................................................................................................................2314.0041003
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1814.0041003
..................................................................................................................................................................................CTGCTGGGTCGGGGCATT.....................................................................................................................................1814.0040022
..................................................................................................................................ATATTGTCCTGTCACAGCG....................................................................................................................................................................................1914.0040004
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCG................................................................................................................................................................................2313.0030102
..................................................................................................................................ATATTGTCCTGTCACAGCAGAT.................................................................................................................................................................................2213.0030003
.....................................................................................................................................TTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2013.0031002
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAGA...............................................................................................................................................................................2413.0031011
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................2313.0030003
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................2013.0031002
..................................................................................................................................ATATTGTCCTGTCACAGCATC..................................................................................................................................................................................2112.0020002
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACAA................................................................................................................................2312.0020011
....................................................................................................................................ATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2012.0020002
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................2212.0020002
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACT.................................................................................................................................2212.0020011
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA...............................................................................................................................................................................2412.0020002
..................................................................................................................................ATATTGTCCTGTCACAGCGTA..................................................................................................................................................................................2112.0020020
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTG................................................................................................................................................................................2312.0020002
...................................................................................................................................TATTGTCCTGTCACAGCAGA..................................................................................................................................................................................2012.0021001
......................................................................................................................................TGTCCTGTCACAGCAGTA.................................................................................................................................................................................1812.0020011
..................................................................................................................................ATATTGTCCTGTCACAGCTA...................................................................................................................................................................................2022.0040022
droYak3
GA--------------------------------T----AT------------------------T-----------------------------CGAATTGG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGAG-GCG-G-------CC--------------------------------------------------------------------------------AGGAAAAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21148530.0048530144111801208912174802513911594250
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22120973.0020973977624129133804111514703492250
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2017246.0072462818474571017892068241050
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2211269.001269173181846971970000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................231693.00693554142126433230000
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................211683.00683170029203618410000
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................191677.0067760220221737330000
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................211351.003511670646610710000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................221169.00169636612305200000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................221164.0016422784352602060
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231145.001452246214232810000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................211129.0012960108131100000
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201107.0010707740121400000
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211107.001074411207700000
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................20185.0085760201600000
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................21179.00791432352500000
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................18175.0075603503400000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................23148.00480100242030000
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................20145.00452000103300000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22143.00437241181100000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................24138.00383400111910000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................23134.00343512131000000
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19133.0033230001000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................23126.0026270141200000
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19126.0026112106510000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAAC............................................................................................................21125.0025200300200000
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20125.0025041911000000
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20121.0021012061200000
........................................................................................................................................................TTGTAACACTATAT--TA-TAGCTTA.......................................................................................................................................................23118.0018004120200000
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................22116.0016000151000000
..................................................................................................................................ATATTGTCCTGTCACAGCC....................................................................................................................................................................................19115.0015100021200000
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGC...............................................................................................................18113.0013100101100000
..................................................................................................................................ATATTGTCCTGTCACAGCAGGT.................................................................................................................................................................................22111.001100004700000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAA...................................................................................................................................20110.001000810000010
..................................................................................................................................................................................CTGCTGGGTCGGGGCATT.....................................................................................................................................18110.001050201200000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGA................................................................................................................................................................................23110.001032011300000
..................................................................................................................................ATATTGTCCTGTCACAGCATC..................................................................................................................................................................................2119.00900000900000
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................1818.00805001010010
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................2318.00800007100000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTC................................................................................................................................................................................2318.00810004300000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTG................................................................................................................................................................................2318.00811003300000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCC................................................................................................................................................................................2317.00700001600000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTA....................................................................................................................................1917.00700601000000
..................................................................................................................................ATATTGTCCTGTCACAGCATG..................................................................................................................................................................................2117.00700003400000
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACT.................................................................................................................................2217.00700700000000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA...............................................................................................................................................................................2416.00600002400000
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCG................................................................................................................................................................................2316.00601004100000
droEre2
A-------------------------------------TAT------------------------ATA---CCATG----------TATA--CCATGAAATCG-------------GACGCTTGCCATTGATATTGTCCTGTCACAGCAGTATTGTAACACTATAT--TA-TAGCTTACTGCTGGGTCGGGGCATTAACATTGTTGAGCGTCATTAGCAACGAGCG-GCG-G-------TC--------------------------------------------------------------------------------A-GGAAAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................ATATTGTCCTGTCACAGCAGT..................................................................................................................................................................................21170255.0070255182722676048113111250477320
..................................................................................................................................ATATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................22117908.001790813696249559272337666320
..................................................................................................................................ATATTGTCCTGTCACAGCAG...................................................................................................................................................................................2017295.007295536445991339957040
..................................................................................................................................ATATTGTCCTGTCACAGCA....................................................................................................................................................................................1915197.00519728421933049130
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2311938.001938951486279116250
..................................................................................................................................ATATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................2211772.0017724451281512014600
..................................................................................................................................ATATTGTCCTGTCACAGCAGC..................................................................................................................................................................................211551.0055114152269980
...................................................................................................................................TATTGTCCTGTCACAGCAGT..................................................................................................................................................................................201263.002631247121111080
...................................................................................................................................TATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................211220.002209418491940
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................231216.00216751312331100
..................................................................................................................................ATATTGTCCTGTCACAGCAGA..................................................................................................................................................................................211180.001801016281530
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAACA.................................................................................................................................221124.00124142223163460
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAA...............................................................................................................................................................................241107.0010740414940
..................................................................................................................................ATATTGTCCTGTCACAGCAGTC.................................................................................................................................................................................221106.0010633115913350
....................................................................................................................................ATTGTCCTGTCACAGCAGT..................................................................................................................................................................................19190.00901036114560
..................................................................................................................................ATATTGTCCTGTCACAGCAGG..................................................................................................................................................................................21182.00822491333300
..................................................................................................................................ATATTGTCCTGTCACAGCAGTG.................................................................................................................................................................................22167.0067824100430
..................................................................................................................................ATATTGTCCTGTCACAGC.....................................................................................................................................................................................18164.006421100600
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAG................................................................................................................................................................................23150.005060101420
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAC................................................................................................................................................................................23146.004662530300
...................................................................................................................................TATTGTCCTGTCACAGCAG...................................................................................................................................................................................19144.004439000050
....................................................................................................................................ATTGTCCTGTCACAGCAGTA.................................................................................................................................................................................20144.0044514000250
..................................................................................................................................ATATTGTCCTGTCACAGCAT...................................................................................................................................................................................20143.004300700360
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGA................................................................................................................................................................................23137.003730002320
..................................................................................................................................................................................CTGCTGGGTCGGGGCATTAAC..................................................................................................................................21133.003311615190
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTG................................................................................................................................................................................23130.003020301240
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCA................................................................................................................................................................................23119.001900201160
..................................................................................................................................ATATTGTCCTGTCACAGCAA...................................................................................................................................................................................20119.001900200170
........................................................................................................................................................TTGTAACACTATAT--TA-TAGCTTA.......................................................................................................................................................23118.001800070110
..................................................................................................................................ATATTGTCCTGTCACAGCAGTCG................................................................................................................................................................................23115.001500103110
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTA................................................................................................................................................................................23115.00153020370
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTAA...............................................................................................................................................................................24113.001300001120
...................................................................................................................................TATTGTCCTGTCACAGCAGTT.................................................................................................................................................................................21112.001210100100
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACA...........................................................................................................22111.00110020270
....................................................................................................................................ATTGTCCTGTCACAGCAG...................................................................................................................................................................................18111.00116000140
...................................................................................................................................TATTGTCCTGTCACAGCAGTAT................................................................................................................................................................................22110.00109000010
...................................................................................................................................TATTGTCCTGTCACAGCA....................................................................................................................................................................................1819.0094000050
..................................................................................................................................ATATTGTCCTGTCACAGCG....................................................................................................................................................................................1919.0090000090
..................................................................................................................................ATATTGTCCTGTCACAGCAC...................................................................................................................................................................................2019.0090110070
..................................................................................................................................ATATTGTCCTGTCACAGT.....................................................................................................................................................................................1818.0080000080
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGC................................................................................................................................................................................2317.0071010050
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCAACG...........................................................................................................2217.0070000070
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTC................................................................................................................................................................................2316.0060020040
..................................................................................................................................ATATTGTCCTGTCACAGCAGTGG................................................................................................................................................................................2316.0060000060
.....................................................................................................................................TTGTCCTGTCACAGCAGT..................................................................................................................................................................................1816.0062020020
...................................................................................................................................TATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2216.0063000120
.....................................................................................................................................TTGTCCTGTCACAGCAGTA.................................................................................................................................................................................1915.0050201020
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTGA...............................................................................................................................................................................2415.0050000050
................................................................................................................................................................................TACTGCTGGGTCGGGGCATTAAC..................................................................................................................................2315.0050001040
....................................................................................................................................ATTGTCCTGTCACAGCAGTAA................................................................................................................................................................................2114.0040000040
..................................................................................................................................ATATTGTCCTGTCACAGCATA..................................................................................................................................................................................2114.0041000030
..................................................................................................................................ATATTGTCCTGTCACAGCAGCT.................................................................................................................................................................................2214.0040000040
........................................................................................................................................................................................................TTGTTGAGCGTCATTAGCT..............................................................................................................1914.0040010030
..................................................................................................................................ATATTGTCCTGTCACAGCAGTTGC...............................................................................................................................................................................2414.0040010030
..................................................................................................................................ATATTGTCCTGTCACAGCAGTAAAA..............................................................................................................................................................................2514.0041000030

Generated: 10/20/2015 at 11:21 PM