ID:

dme-mir-9371

 Coordinate:

chr3R:5814842-5814902 +

 Confidence:

Known Ortholog

 Type:

three_prime_UTR

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.5 -39.5 -39.4

Sense Strand Reads

TCAAACAAACAAACAAACAAATCAAAATGAAACAATCGGAGGTGCTGCAGAAATCACTTTGCTTGGAATTCACATTGATGTACGTAAGAATTCATCACGAAGTGGTTTCTGTGTTGCCTCCGATTGAAAGCAGAATATTCAAATGAAAACCTAAAAATATG
***********************************(((((((((.((((((((((((((((....((((((................))))))....)))))))))))))))).)))))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V0642
ago2 ovary, AGO1-IP, reseq
AGO1
 GSM628271
r2d2[1] ovary total RNA  
 V0632
wt ovary AGO1-IP, reseq
AGO1
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1
 GSE24545
CS ovary total RNA
 GSM609232
r2d2[1] ovary total RNA  
 GSM628272
ago2[414] ovary total RNA
 GSM379056
Krimp Heterozygote
 GSM379064
Vasa Mutant
 GSM379065
Zuc Heterozygote
 SRR029608
total small RNAs from hen1 heterozygous flies
 GSM609231
ago2[414], ovary, AGO1IP
AGO1
 SRR014278
Ovary_rep1_w1118(fem)_x_Har(male)_F1
 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 SRR014276
Ovary_rep1_NA(fem)_x_Har(male)_F1
 GSM609230
CS,ovary,AGO1IP
AGO1
 GSM609237
ago2[414] ovary total RNA
 V148
mbn2 		SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1
 SRR065801
zuc_het(H-Y)_ovaries
 SRR014274
Ovary_rep1_LK(fem)_x_Har(male)_F1
 GSM379057
Krimp Mutant
 SRR317117
genotype: zuc_hm27/zuc_cd761stage: from 5-6 days old flies
 SRR014273
Ovary_rep1_Har_P
 SRR029633
total small RNAs from hen1 homozygous flies
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1
 V073
mbn2 		SRR014281
Ovary_rep1_wK(fem)_x_w1118(male)_F1
 SRR317113
genotype: CG47711-delta1/CG4771-delta1stage: from 5-6 days old flies
 SRR014277
Ovary_rep1_NA_P
 GSM379063
Vasa Heterozygote
 SRR031703
Total small RNAs from r2d2 homozygous flies
 SRR014279
Ovary_rep1_w1118(fem)_x_wK(male)_F1
 SRR014275
Ovary_rep1_LK_P
 V144
OSC		 SRR031692
Total small RNAs from Oregon R
 GSM379062
Squ Mutant
 SRR014280
Ovary_rep1_w1118_P
 SRR298712
strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant
 V140
Dessication_female_body
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 SRR060644
A2_ovaries_total
 GSM379052
Aub Heterozygote
 SRR298537
strain: vret148-60/vret148-60genotype/variation: Vret Mutant
 V127
G2		 V078
Desiccation, female head
 V077
cold, female head
 SRR317110
genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies
 SRR317116
genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies
 SRR060646
yw67c23(2)_ovaries_total
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 GSM379061
Squ Heterozygote
 V137
Male aged head
 V086
female body, aged
 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 GSM609234
CS  male total RNA  
 GSM379053
Aub Mutant
 SRR029028
untreated (mock)
 GSM379058
Piwi Heterozygote
 SRR065800
zuc_H-Y_ovaries
 V080
Starvation, female head
 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1
 SRR031696
Ago1-associated small RNAs from Oregon R
AGO1
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 GSM379067
SpnE Mutant
 V079
Oxidation, female head
 V091
fGS/OSS total  		 V006
r2d2 female: possibly heterozygous
 GSM379066
Zuc Mutant
 V085
CME W2 wing disc		 V141
Heat_female_body
 GSM609224
female, one day
 V139
Cold_female_body
 V142
Oxidation_female_body
 GSM379051
Armi Mutant
 SRR014282
Ovary_rep1_wK_P
 GSM609223
male, one day
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 GSM379050
Armi Heterozygote
 GSM379060
SpnE Heterozygote
 SRR001349
heterozygous_dcr-2_untreated
 V015
DreRFHV148h
 V138
Male cold body
 GSM379059
Piwi Mutant
 GSM280082
WT ovaries (18-29nt)
 GSM379054
Flam Heterozygote
 GSM379055
Flam Mutant
 GSM240749
female head
 GSM322533
female head #1
 GSM399107
male body #2
 V032
S1 cell		 GSM609238
embryo 14-24hr
 SRR060650
A1_testes_total
 SRR001339
WT_females_non-beta-eliminated
 V136
Male aged body
 GSM322543
male head #1
 SRR014271
Embryo_0-2hrs_rep1_w1118_0_2hr_Emb
 SRR097866
Drosophila S2-NP cells
 GSM609219
GM2 cell		 V034
ML-DmD16c3 cell		 GSE24544
dcr-2[L811fsX] ovary total RNA
 V146
S1 cell		 SRR001347
ago2_untreated
 GSM399101
kc167 cell		 GSM609222
ML-DmBG1-C1		 SRR010955
Aub IP in Ago3 heterozygotes
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR065155
Piwi bound piRNAs from tj GAL4 > RNAi-fs(1)Yb ovaries
 GSM609247
heat female head
 GSM609250
ML-DmD32 cell		 GSM371638
S2-NP		 V147
1182-4H cell		 GSM399106
female body #2
 GSM360262
0-2d pupae
 GSM399110
KC-48 #2
 GSM286603
female body
 SRR029032
r2d2 knockdown
 SRR060645
yw67c23(2)_testes_total
 SRR341115
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 GSM609220
ML-DmD21 cell		 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1
 GSM609225
ML-DmBG3-C2		 SRR031699
Total small RNAs from dcr-2 homozygous flies
 GSM280088
S2cell (AGO1IP)
AGO1
 GSM467731
Dmel_loq_sRNAseq
 GSM385748
OSS_s6		 GSM609243
KC+48 #1
 SRR031693
2'-O-methylated small RNAs from Oregon R
 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 SRR060653
hs-Penelope_ ovaries_total
 SRR341118
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 V008
S2-DRSC		 GSM609251
aged female head
 V031
GM2 cell		 V131
ML-DmD16-c3 		V132
ML-DmD32 		SRR014270
Embryo_0-2hrs_rep1_NA_0_2hr_Emb
 GSM180328
adult heads (female heads, male heads)
 GSM609242
s2+48 #2
 SRR001338
IR_non-beta-eliminated
 SRR001341
WT_males_non-beta-eliminated
 SRR001345
ago2_non-beta-eliminated
 SRR031694
2'-O-methylated small RNAs from Oregon R
 SRR032093
ago1 knockdown
 SRR060651
A2_ovaries_Ago3
AGO3
 SRR060652
hs-Penelope_testes_total
 SRR065804
Piwi-IP_zuc_H-Y_ovaries
 GSM609239
IR- 2-18hr
 GSM399100
Kc167 cell		 V036
ML-DmD20c5 cell		 V038
Felix sample S2 only
 V092
dcr-2[G31R] male total RNA  
 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1
 V125
ML-DmD9		 V130
ML-DmBG3-c2 		SRR065154
Piwi bound piRNAs from tj GAL4 > RNAi-zuc ovaries
 GSM609240
IR+ 2-18hr
 V012
Dcr2 male (Katsutomo, whole fly?)
 GSM343833
S2R+ cell		 GSM280084
loqs-/- ovaries (18-29nt)
 GSM312995
WT, oxidized
 GSM313160
dcr-2 homozygous, oxidized
 GSM467729
Dmel_wt_sRNAseq
 GSM385744
OSS_s2		 GSM385821
OSS_s7		 GSM385822
OSS_s8		 GSM286601
male head
 GSM286611
6-10h #2 (11)
 GSM272652
S2 -48 Biological Replicate #1
 GSM322219
2-4day pupae #1
 GSM360257
1st instar #2
 GSM360260
0-1d Pupae (w)
 GSM286602
male body
 GSM361908
s2-48 Biological Replicate #2
 GSM275691
imaginal disc
 SRR010957
Aub IP in Ago3 trans-heterozygotes
 SRR014272
Embryo_0-2hrs_rep1_wK_0_2hr_Emb
 SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 SRR097865
Drosophila S2-NP cells
 SRR097867
Drosophila S2-NP cells
 V022
ML-DmD32 cell		 V023
Dcr2 female head
 GSM609221
1182-4H cell		 GSM609249
ML-DmD21 cell		 GSM609248
ML-DmD9 cell		 V030
ML-DmD8 cell		 GSM609227
CMEW1 Cl.8+ cell		 V037
Felix sample +mirtrons
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2
 V096
loqsKO/f00791 ovary
 V126
CME L1 		V128
S3 		V129
ML-DmBG1-c1		 V145
S2-DRSC		 SRR014268
Embryo_0-2hrs_rep1_HAR_0_2hr_Emb
 SRR014269
Embryo_0-2hrs_rep1_LK_0_2hr_Emb
 SRR001337
WT_females_beta-eliminated
........................................................................................AATTCATCACGAAGTGGTTTCT................................................... 22 0 1 4990.00 4990 502 530 410 273 326 155 181 118 122 103 82 86 105 87 92 65 72 61 48 61 71 63 45 45 48 48 44 41 30 32 34 26 33 33 33 37 25 35 32 29 23 17 29 26 26 13 19 14 14 11 25 8 23 9 15 18 11 23 19 18 14 13 1 13 7 17 17 10 17 10 14 10 11 8 6 7 9 5 8 4 9 10 1 7 5 10 3 7 6 3 4 3 2 3 5 3 2 2 0 3 4 2 1 2 1 4 0 0 1 0 2 0 3 1 2 3 0 4 3 2 3 2 0 2 0 0 0 2 0 2 0 0 2 1 1 1 1 1 0 0 2 0 2 1 0 0 1 1 0 0 1 2 0 0 2 1 0 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 0 0 0 1 0 0 0 0 1 1 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0
..................................................AAATCACTTTGCTTGGAATTCA......................................................................................... 22 0 1 1238.00 1238 170 102 115 124 25 36 24 47 42 29 26 22 15 13 11 16 5 21 29 14 8 18 16 21 14 11 24 4 22 4 8 6 1 11 2 3 9 4 5 5 3 3 7 3 3 1 2 4 6 12 2 16 0 1 1 6 4 0 0 3 5 5 0 3 6 2 1 1 0 4 3 2 0 2 4 0 0 3 1 2 1 0 0 3 0 0 3 0 1 2 1 2 0 0 0 2 0 4 0 0 0 0 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................ATTCATCACGAAGTGGTTTCT................................................... 21 0 1 677.00 677 80 62 73 46 52 10 21 15 10 15 12 20 9 7 14 6 7 11 15 5 6 4 8 3 9 7 6 5 0 10 5 5 2 2 4 6 1 3 0 1 6 3 0 4 0 2 3 1 8 3 1 2 4 1 1 1 1 2 3 1 2 0 0 1 2 2 3 4 1 1 0 2 1 2 3 1 2 4 1 1 0 0 1 0 2 0 0 1 0 0 0 0 0 0 0 1 1 0 0 3 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................AAATCACTTTGCTTGGAATTC.......................................................................................... 21 0 1 329.00 329 23 51 20 10 8 8 5 12 10 14 4 8 8 7 0 5 3 12 4 4 2 1 12 10 9 2 0 5 9 2 5 1 2 0 5 1 1 0 0 1 7 0 1 1 2 0 0 1 2 2 1 2 0 0 0 0 1 1 0 0 1 0 1 0 4 0 0 0 0 2 0 0 0 0 1 0 0 0 0 2 0 0 0 0 1 0 2 0 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCACGAAGTGGTTTCTGTGTTG............................................. 22 0 1 160.00 160 3 1 0 1 0 0 2 1 0 1 1 1 2 9 3 1 0 4 2 0 1 0 1 2 0 4 1 0 0 2 0 0 1 0 1 0 0 0 2 1 1 0 1 0 3 11 3 4 1 2 0 0 0 6 2 1 1 0 1 0 1 1 6 0 1 0 0 1 0 0 1 0 2 0 0 1 0 0 2 1 0 0 2 1 1 0 1 0 0 3 1 1 2 4 2 0 3 1 0 0 0 3 1 0 0 0 0 0 0 0 1 4 0 0 1 0 4 0 0 0 1 0 1 0 2 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 2 0 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGTGGTTTC.................................................... 21 0 1 152.00 152 8 8 13 10 9 3 3 5 5 5 1 1 3 2 3 5 2 3 0 0 2 1 2 4 2 0 0 4 3 0 1 3 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 3 0 0 2 0 0 3 0 0 1 0 3 0 2 1 0 0 0 0 0 2 0 0 0 2 2 0 1 3 1 0 0 0 0 0 0 0 0 0 1 0 0 0 2 1 1 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................ATCACGAAGTGGTTTCTGTGTT.............................................. 22 0 1 110.00 110 3 5 8 2 3 0 4 0 1 0 1 2 0 2 1 3 1 1 0 1 1 1 0 3 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 1 0 1 7 1 0 1 0 0 2 0 7 0 0 0 0 0 1 0 1 13 1 0 1 0 1 0 0 1 0 0 1 0 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 2 0 0 0 0 0 0 0 1 4 1 0 0 0 0 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGTGGTTTCC................................................... 22 1 1 82.00 82 14 13 3 7 6 4 7 0 1 1 3 1 1 2 1 2 0 1 0 0 1 1 1 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGAGGTTTCT................................................... 22 1 1 48.00 48 8 6 7 4 0 3 2 2 1 1 1 1 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAATCACTTTGCTTGGAATT........................................................................................... 20 0 1 43.00 43 4 2 9 1 0 2 0 2 2 1 0 1 2 0 0 0 0 2 0 2 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGCGGTTTCT................................................... 22 1 1 43.00 43 3 5 9 4 0 6 0 1 0 1 1 1 1 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGTGGTTTCTT.................................................. 23 1 1 32.00 32 2 7 3 2 0 1 0 1 2 1 2 0 0 0 0 0 0 1 0 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGGGGTTTCT................................................... 22 1 1 28.00 28 4 3 3 1 0 1 0 0 1 0 2 0 0 0 0 1 1 0 0 1 0 1 0 0 0 1 0 1 1 0 1 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGTGGCTTCT................................................... 22 1 1 27.00 27 3 3 3 0 0 3 2 0 0 1 1 0 0 0 1 0 0 0 0 2 1 1 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGTGGTTT..................................................... 20 0 1 27.00 27 0 4 0 0 0 2 0 1 0 0 2 1 4 0 1 0 0 1 2 0 0 0 0 0 0 0 1 1 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGTGGT....................................................... 18 0 1 25.00 25 2 2 1 5 0 0 0 0 0 0 0 1 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ACTTCATCACGAAGTGGTTTCT................................................... 22 1 1 24.00 24 4 2 4 3 0 5 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACGAAGTGGGTTCT................................................... 22 1 1 23.00 23 0 1 4 2 0 0 2 0 0 0 0 1 0 0 0 0 3 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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........................................................................................AATTCATCATGAAGTGCTTTCT................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TAATCACTTTGCTTGGAATTCA......................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................ATTCATCAAGAAGTGGTTTCT................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................CACGAAGTGGTTTCTGTGTTGCCT.......................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCATCACAAAGGGGTTTCT................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAAACAAACAAATCAAAATGAA.................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTCAACACGAAGTGGTGTGT................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AATTAATCACGATGTGGCTTCT................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CCTCCGATTGAAAGCAGAATATTCA.................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................ATCAAGAAGTGGTTTCTGTGTT.............................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTTTGTTTGTTTGTTTGTTTAGTTTTACTTTGTTAGCCTCCACGACGTCTTTAGTGAAACGAACCTTAAGTGTAACTACATGCATTCTTAAGTAGTGCTTCACCAAAGACACAACGGAGGCTAACTTTCGTCTTATAAGTTTACTTTTGGATTTTTATAC
************************************(((((((((.((((((((((((((((....((((((................))))))....)))))))))))))))).)))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V078
Desiccation, female head
 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2		 V008
S2-DRSC		 SRR001349
heterozygous_dcr-2_untreated
 GSM609224
female, one day
 GSM609225
ML-DmBG3-C2		 GSM609227
CMEW1 Cl.8+ cell		 V0642
ago2 ovary, AGO1-IP, reseq
AGO1		 GSM628271
r2d2[1] ovary total RNA  
 V129
ML-DmBG1-c1		 V148
mbn2 		SRR031701
Total small RNAs from r2d2 heterozygous flies
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 GSM609222
ML-DmBG1-C1		 SRR029633
total small RNAs from hen1 homozygous flies
 GSM609223
male, one day
 V073
mbn2 		V077
cold, female head
 GSM609232
r2d2[1] ovary total RNA  
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1		 V086
female body, aged
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 GSM609251
aged female head
 SRR010954
Aub trans-heterozygotes, oxidized
 SRR065154
Piwi bound piRNAs from tj GAL4 > RNAi-zuc ovaries
 V022
ML-DmD32 cell		 SRR010953
Aub heterozygotes, oxidized
 SRR001348
ago2_oxidized
 SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1		 V003
dsDcr-1 (katsutomo RNA)
 GSM371638
S2-NP		 SRR060645
yw67c23(2)_testes_total
 GSM609237
ago2[414] ovary total RNA
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1		 SRR031692
Total small RNAs from Oregon R
 GSM286607
6-10h #1 (10)
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 V032
S1 cell		 V0632
wt ovary AGO1-IP, reseq
AGO1		 SRR001664
homozygous_dcr-2_untreated
 GSM609248
ML-DmD9 cell		 V038
Felix sample S2 only
 V036
ML-DmD20c5 cell		 V015
DreRFHV148h
 SRR029033
lacZ knockdown
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 V012
Dcr2 male (Katsutomo, whole fly?)
 GSM609229
embryo 2-6hr
 GSM609238
embryo 14-24hr
 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1
...........................................CTACGTCTTTAGTGTAAC.................................................................................................... 18 2 13 2.38 31 0 0 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................CTAACTTTGGTCTTACAAGTA................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CAACGGGGGCTAACTTTGG.............................. 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TTTGTTTGTTTCGTTTTACT................................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................ATGCATTCTCAGCTAGTGCTT............................................................ 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TCTGATAAGTTTACTTTCGGAAT....... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CATGCATTCTTGAGTAGTTTT............................................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GCATTCTTAAGTAGTGCTTCACC........................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTATATGTTTACTGTTGGAGT....... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAGTCGTAAGTAGTACTTCACC........................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTAGTGAAAAGAACCTTAAG.......................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGACACAACGGAGGCGAACTT................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CCAAGAAGTCTATAGTGAAAC.................................................................................................... 21 3 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TATGTGTTACTACATGCAGTC......................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................ACGTCTTTAGTGGAACGCA................................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................CGCGATCTTTCGTCTTATAAG..................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGTTTGTTTAGTTTGGCTTTGT............................................................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TCCAAGAAGTCTATAGTGAAA..................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AAGTCATAACGGACGCTAACT.................................. 21 3 4 0.50 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................CAACGTAGGCTAACTGTCGTA............................ 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AAAGTCATAACGGACGCTAACT.................................. 22 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AAGTTTACTTTGGGATTT...... 18 1 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................CAAAGCCACAACGGAGGCC...................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GGCTGTTTGTTTAGTTTTACT................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................ACGTCTTGAGTGTAACGAA................................................................................................. 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCAACAAAGATACAACCGAGG........................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................ACCTTAACTGGAACTACAGGC............................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTAGTTTTAATCTGTCAGCCT......................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TCATTCTTAAGTAGTGCTCTAC......................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TGTGTGGTTTTATTTTGTTAGCC.......................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTCTTATAAGTTTCCTTTGGA.......... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TGTTTAATTTGCCTTTGTTAGC........................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GCCTCCACGATGTCTCTA........................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TCGTCTTAGGAGTTAACTTTT............ 21 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACGAACCTGAAGTATAACT................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................CACGCCGTCTTTTGTCAAACG................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGTTCTTCTTATAAGTATACTTT............. 23 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TTCAGTTTTACTTTGTCAGAC.......................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TCTTAAGTATTGCTTCACATA...................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................ACGACTTTAGTGAAACGACCG............................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GTTTACTGTTGGATTAGTATA. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GTTTGATTGTTTAGTTTGACGTT................................................................................................................................. 23 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................GTTTTGCGTTTTTAGCCTCCAC..................................................................................................................... 22 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CTTTCGTCTTATGGGTTTCCT............... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....CGTTTGTTTGTTTGTTGAGTTT....................................................................................................................................... 22 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................ATACGTTTACTGTTGGATT....... 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................TTTGGCCCCCACGACGTCTTT............................................................................................................ 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TCTATGTTTACTTTTGGATT....... 20 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGTTCGTTTAGTTTTACGTAGT............................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTCTTGTAAGTTTACATATGG.......... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................TCCACGGCGTCTTTAGGTAAA..................................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AGTTTTACTGTGTTAGGC.......................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............TTGTTTAGTTTTACATGGTT.............................................................................................................................. 20 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......TTGTTAGTTTGTTTAGTTTTC..................................................................................................................................... 21 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GGATTACTTTCGTCTTAT........................ 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGTTTGTTTATTTTTGCTTTGT............................................................................................................................... 22 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGTTTGTATAGTTTTAGTTCGTT.............................................................................................................................. 23 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....TGTTTGTTTGTTTGAGTAGTGT....................................................................................................................................... 22 3 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
.......................................GCCAAGACGTCTTTGGTGAA...................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTAAGTCGGGCTTCACCATA..................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TGTAGTGCGTCACCAAGGACA................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................AACGAAGTCTATAGTGAAAC.................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGTTTGTTTAGTTTGAGTTTGC............................................................................................................................... 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................ACGAACCTGATGTGTAACT................................................................................... 19 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................ACGTCTTTAGTGCGCCGAAC................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACTTTCCTCTTATAAG..................... 18 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CACGTCTTTAGTGTACCGAA................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GCCAAAGACACAACGAAG......................................... 18 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TTGCTTGTTTGTTTGTGTAG.......................................................................................................................................... 20 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................TGTATAAGTTTACTTTTGG.......... 19 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTCTTACAAGTTTCCTTT............. 18 2 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTATAAGTTGACTGCTGGATT....... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........GTGTGTTTGTTGAGTGTTACT................................................................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............GATTGTTTAGTTTTACTCT................................................................................................................................. 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............TTTGTTTAGTGTTACTTCGAT.............................................................................................................................. 21 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TTATAATTTTACTGTCGGATT....... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............TGTTTGTTGAGTTTGAGTTTGT............................................................................................................................... 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................TGTTTAGTTTAGCGTTGTTAG............................................................................................................................ 21 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AGTCTGTCTGTTTCTTTGTTTA........................................................................................................................................... 22 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGCTGCACCACAGTCACAA.............................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TTTGTTTGATTGTTTAGTTAT...................................................................................................................................... 21 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........TTGTTCGTTTCGTTTTACTT.................................................................................................................................. 20 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AGTTTGTTTGGTTGCTTGTTT............................................................................................................................................ 21 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................AACGACGTCTTTAGCGAA...................................................................................................... 18 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........TGTTTGTATGATTAGTTTT...................................................................................................................................... 19 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................ACGAACCTGACGTGTAAC.................................................................................... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTTACTGTTGGATTAGTATA. 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................AGTGTAGTTTTGCATTTTTAT.. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........TTGTTCGATTAGTTTTACTGT................................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................TTTAGTGAAATGAATCTTAAA.......................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........TTTGTTTGATTAGTTTTACGGT................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................GGAAGCTAACTCTCGTCAT.......................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....GTTTGGCAGTTTGTTTAGTTT....................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGCTATCTTTCGACTTATAAG..................... 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........TGTGGGTGTTTAGTTTTACT................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................AAGCAGTGCTCCACCAAG..................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TCGTTTTTTTGTGTGTTTAGTT........................................................................................................................................ 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........TGGTTTGTTTAGTGTTACA................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................TTTATATGTTTACTTATGGATT....... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..CTTGTGTGGTTGTTTGTTTAGT......................................................................................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGATACAACGAAGGCTAGC................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................GCCTCCAAGACGTCTCTAA.......................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GACATGCAGTCTTGAGTA.................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GAGTATAACCTTCGTCTTA......................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTACTTTTGGATTAGTAT.. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
AGTTTCTTTGTTGGTTTGT.............................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CTTTGTTTGTTTCGTTTCACT................................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................TCGAAGTTTAATTTTGGATTT...... 21 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............TGTGTGAAGTTTTACTTTGTT.............................................................................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dm3 chr3R:5814792-5814952 + dme-mir-9371 TCAAA-CAAA------CAAACAAACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGAAATCACTTT-----------GCTTGGAATTCACATTGATGTACGTAAGAA-----------TTCA---TCACGAAGTGGTTTCTGTGTTGCCTCCGATTGAAAGCAGAA-TATTCAA-A---------------------------------------T---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------
droSim2 3r:15234024-15234184 - TCAAA-CAAA------CAAACAAGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCGGCAGAAATCACTTT-----------GCTGGGAATTCACATTGATGTACGTAAGAA-----------TTCA---TCACTGAGTGGTTTTTGTGTTGCCTCCGTTTGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------
droSec2 scaffold_0:16103204-16103367 - TCAAA-CAAA------CAAACAAGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGAAATCACTTT-----------GCTGGGAATTCACATTGATGTACGTAAGAA-----------TTCATCATCACTGAGTGGTTTTTTTGTTGCCTCCGTTTGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------
droYak3 3R:9862939-9863096 + TCAAA-CAAA------C----AAACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GCGGTGGTGCAGAAATCACTTA-----------GCTCTGAATTTACATTGATGTACGTAAGAA-----------TTCG---TCACGAAGTGATTTGTGTGCCGCCGCCGCTTAAAAGCAGAAATATTTAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------
droEre2 scaffold_4770:15787665-15787814 - TCAAA-CAAA------C----AAACAAATCAAAATG--A--G-----------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGGTGCAGAAATCCCTTT-----------GCTCGGAATTTACGTTGATGTACGCAAGAA-----------TTCG---TCACGAAGTGATTTCTGTGCCGCCTCCGCTTGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------
droEug1 scf7180000409470:137608-137819 + ACAAA-CAAACAACAACAAACAAACAAATGAAAACA--A---ACAATATTTAAAGCAAATATACATTTGATTTTTTTTAGTTATAAGAACTCTAGTAAATTTTTTTCTAGTATTAAGTGCAATTTCTGTTCTACTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCT-CTAAACAA----------------------AGAAAACAAAAAACGAAAATGAAATGAAATGAAATGTAAGAAAACGAAGCAAA-----------CCAACTCAAAACAAA------------------------------------------------------------------------------
droBia1 scf7180000302402:3304860-3304945 + TCAAA-CAA--------------GCAAATCAAAATG--A--AA-----------------------------------------------------------------------------------------------------------------------------GTTGAAAGATGAAAATGAGAAATGAAACTAT----------------------------------------------------------------------------------------------------------------------AAGCAGAA-TATTCAAAA---------------------------------------C---------------------G------------AAACCCA---ATATG------------------------------------------------------------------------------
droTak1 scf7180000410697:8398-8537 + AACAA-AAA---------------AAGATAAAAATAACA--AC--------------------------------------------------------------------------------------------------------------------------------------------------------ATATA-CAGGAGTGTCACAGAAATCTCTTCCAACCGAAGACGGTTGGATTTTGCATTGATGCACGTAAGAACTTTAACGGATTTCG---GTTGGAAATAATTTCTGTGACACCCCCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490967:922653-922717 - TCAAA-CAA-------------AACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-----------AAACCTAAAGATATG------------------------------------------------------------------------------
droRho1 scf7180000779916:13603-13667 - TCAAA-CTA-------------AACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-----------AAACCTAAAGATATG------------------------------------------------------------------------------
droFic1 scf7180000454104:1016509-1016639 - TCAAA-CAA--------------ACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTATA---AAGAT------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-----------AAACCTAAAGATATGCATATTAAATATTCAAGGCGTTG-----------------CATCTACACATTTAAAATAGGCATAAACAAAAAATAGT
droKik1 scf7180000302706:2050364-2050443 + TCAAAACAA------------AAACTAATCAAAATGGCA--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAAACGAAA------------------------C----GAAAC---------------------GA-----------AAACCTAAAGATATG------------------------------------------------------------------------------
droAna3 scaffold_13340:6374755-6374855 + TCAAAACAA-------------AGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------TAAGCAGAA-TATTCAAAACAGTAAGGAAGGTAGACAAAAAACAAAAAAC----AAAAA---------------------TA-----------AAACCTAAAGATATG------------------------------------------------------------------------------
droBip1 scf7180000396708:2470727-2470827 - TCAAAACAA-------------AGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------TAAGCAGAA-TATTCAAAACAGAAAGGAAGGTAGACAAAAAACAAAAAAC----ATAAA---------------------TA-----------AAACCTAAAGATATG------------------------------------------------------------------------------
dp5 2:5157785-5157865 - TCAAA-CAAA------CAAACAAACAAATCAAAATG--G--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-AA-ATGAGAAAAACCTAAAGATATG------------------------------------------------------------------------------
droPer2 scaffold_19:868140-868220 - TCAAA-CAAA------CAAACAAACAAATCAAAATG--G--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-AA-ATGAGAAAAACCTAAAGATATG------------------------------------------------------------------------------
droWil2 scf2_1100000004943:16245644-16245713 - ATATT-CAAA------AGAAAAAAAAAACAAAAACA--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----------------------------------------------------------------------------------------------------------------------AGGCAAAACTGAACAG-A---------------------------------------A---------------------GC-----------AAATCTAAAGATATC------------------------------------------------------------------------------
droVir3 scaffold_13047:10694549-10694724 - TTAAA-CAAA------TATACA------TCTGATTT--T--TT---------------------------------TAGTTTGTAAG-ACTCTAGAAAATTTTTTCTTAGTATT-AGTGCAATTTTTGTTCTTCTTCTTGCTCCCAAAATATTCAAAACAAAGTAAATAATACAAAACAAAACAAAACAAA------------------------------------------------------------------------------------------------------------------------------------AA-AATGCAA-A---------------------------------------T---------------------CAAAATATAAAAATAACCG--AATTATG------------------------------------------------------------------------------
droMoj3 scaffold_6540:31098707-31098823 + AGAAA---AC------TGAAAATGCAAATCAAAATA--A--G---------------------------------------------------------------------------------------------------------------------------------------------------------TAATAA--CAAATAACCAACAAATATTA---------------------------------TAAATA-------------------------------------------------------------AA-TATTCGAAA---------------------------------------C---------------------G-----------------------------------------------TTTTACATCCAAAACATATTCAAATACAGATTTCAAATAC--ATA-------------
droGri2 scaffold_14624:453015-453111 - CACAA-AAAA------TAAA-----AATTAAAAATA--TGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-----AAATAT------------------------------TGAATATATATATATGTATATATATA-----------TA----------------------------------------TATATA-TATTCAT-A---------------------------------------T---------------------GT-----------ATA--TATATATATA------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dm3
TCAAA-CAAA------CAAACAAACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGAAATCACTTT-----------GCTTGGAATTCACATTGATGTACGTAAGAA-----------TTCA---TCACGAAGTGGTTTCTGTGTTGCCTCCGATTGAAAGCAGAA-TATTCAA-A---------------------------------------T---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCT..........................................................................................................................................................................................................2214990.0049900000000000000000000003000000000000009926237611845181010233526122103141700010000000000000000000121100000010000300423000320102000400000003020001010100000000000000004863339234105333230500000190003082480252013400017133000000610292250005110000001471000000131872618291471732488114530020000000102100001071402004000010120202106541086502014427334100214191013038810151555307218111170102032611013000110002956231173702161
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAATTCA..............................................................................................................................................................................................................................................................2211238.001238000000000000000000000300000000000000103001471630004642293100000000000000000000000000000000000000200112000140000000000000002000000010000000000000000001418211815115223000000000002611090132000311002000140702000011000000580000000001336566242916122100010000000400000020300000010000000000000016115221701024124040004215001221361025244000001250001000000000104300301021
.........................................................................................................................................................................................................................................................................A-----------TTCA---TCACGAAGTGGTTTCT..........................................................................................................................................................................................................211677.006770000000000000000000000000000000000000242101581004351015030000000000000000000000000000000000000000000000000000000000000000100000001010000000000000000944145920040000030000012701001100030200000050011000000200000260000000307011822101523300000000100100000000000010000000000000000067320800064605021134000122110627211100000520012000100001123611600011
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAATTC...............................................................................................................................................................................................................................................................211329.003290000000000000000000002000000000000000011011212000001101400000000000000000000000000000000000000000001010010000000000000000000000000100000000000000000091505800900000000000042010002000002000000401010000000000001200000000072012402422100000000000020100000000000001000000010000005208230101005000100000000085135100000080000000000000011700100212
............................................................................................................................................................................................................................................................................................TCACGAAGTGGTTTCTGTGTTG....................................................................................................................................................................................................221160.001600000000000000000000001010000000000000000001100000001100000000000000000000000000000000100000130011100001000043001000000000000100020000000000000000001302020000000100000140000010200010000000010000020000000011002000000931111022022100000000000100001001000001011000102034002101316110000043110420020102100000001001100100000361012100004
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTC...........................................................................................................................................................................................................211152.0015200001000000000000000010000000000000001100052000003550000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000012103130030000003000001000000000010000000000002000000000000220000000002100000000040000000000000000000000200000000000010000005131800010040103121000020382310000009000001000000030102300003
........................................................................................................................................................................................................................................................................................A---TCACGAAGTGGTTTCTGTGTT.....................................................................................................................................................................................................221110.001100000000000000000000000000001000000000100000010000110100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000110100000000000000000100000100000000000001010000000000000001000000000210010100203000000000000100000000000010000000001011000382311302000010111020100051400000003400700010000071020200121
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCC..........................................................................................................................................................................................................22182.008200001000000000000000000000000000000000201001100001110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101010000000000000003000000000000000000000001000000000000010000000002001000000000000000000000000000000000000000000000000002311400070100000000000004130710000006000000000000000010000001
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAATT................................................................................................................................................................................................................................................................20143.0043000000000000000000000000000100000000000000210000002101000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000200000000000000000000020000000000000200000001000000000000000000000011002010000000000000100000000000000000000000000000009140001000000000000000220000000000000000000000000000000002
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCTT.........................................................................................................................................................................................................23132.0032000000000000000000000000000000000000000000120000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000020000010000000000000200000000000000000100000000000100000000000000000000000000000000000000000000000000003020002000000100000010170000000000000000000000000000000001
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTT............................................................................................................................................................................................................20127.0027000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210400000000000000020000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000100010010002001000000240000000000000000000000000000100001
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGT..............................................................................................................................................................................................................18125.0025000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000080220000000000000000000000000000000000000000000100000001120005000000000000000020000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A-----------TTCA---TCACGAAGTGGTTTCTG.........................................................................................................................................................................................................22121.0021000000000000000000000000000000000000010100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000003110001000000000000000010500000001000000000000000101000000
.........................................................................................................................................................................................................................................................................A-----------TTCA---TCACGAAGTGGTTTCC..........................................................................................................................................................................................................21119.0019000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003040004000000000000000010300000001000000000000000000000001
........................................................................................................................................................................................................................................................................................A---TCACGAAGTGGTTTCTGTGTTG....................................................................................................................................................................................................23117.0017000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000302000000000000001000110000001000100000000000000011000
............................................................................................................................................................................................................................................................................................TCACGAAGTGGTTTCTGTGTT.....................................................................................................................................................................................................21115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000010000000000001000001001020000000000200100000030000000100
.........................................................................................................................................................................................................................................................................A-----------TTCA---TCACGAAGTGGTTTCTT.........................................................................................................................................................................................................22114.0014000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000002140000000000000000000040000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTT.............................................................................................................................................................................................................19113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000020002010001201000100000000000000000000000000000000000000
........................................................................................................................................................................................................................AATCACTTT-----------GCTTGGAATTCA..............................................................................................................................................................................................................................................................2119.009000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAATTCAA.............................................................................................................................................................................................................................................................2317.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000010100003000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TCACATTGATGTACGTAAGAA-----------T................................................................................................................................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GAAGTGGTTTCTGTGTTGCCT.................................................................................................................................................................................................2116.006000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTTTCTGTGTTGCCTCCGATT...........................................................................................................................................................................................2115.005000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAAT.................................................................................................................................................................................................................................................................1915.005000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000
......................................A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGA..............................................................................................................................................................................................................................................................................................2215.005000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000
.................................................................................................................................................................................................................................................................ACGTAAGAA-----------TTCA---TCACGAAGTGGT..............................................................................................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCTA.........................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000011000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TTTCTGTGTTGCCTCCGATTG..........................................................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCA..........................................................................................................................................................................................................2214.004000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCCT.........................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCTC.........................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000
...................................G--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAG...............................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTCA---TCACGAAGTGGTTTCT..........................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTT..................................................................................................................................................................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................AATCG--GAGGTGCTGCAGAAATC..........................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000
.......................................................................................................................................................................................................................................................................................CA---TCACGAAGTGGTTTCT..........................................................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................A-----------TTCA---TCACGAAGTGGTTTCTGT........................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TCACGAAGTGGTTTCTGTGTTGC...................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AATCACTTT-----------GCTTGGAATTCAC.............................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................TCACGAAGTGGTTTCTGTGTTGCCT.................................................................................................................................................................................................2512.002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................ATTCACATTGATGTACGTAAG..............................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACTTT-----------GCTTGGAATTCACATT..........................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TTCA---TCACGAAGTGGTTTCTT.........................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTTTCTGTGTTGCCTCCGATTG..........................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CA---TCACGAAGTGGTTTCTGTGTT.....................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................TCA---TCACGAAGTGGTTTCTGT........................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AGCAGAA-TATTCAA-A---------------------------------------T---------------------GA-----------.............................................................................................1812.002000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................ACGAAGTGGTTTCTGTGTTGC...................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................TCACGAAGTGGTTTCTGTGTTT....................................................................................................................................................................................................2212.002000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................TTT-----------GCTTGGAATTCACATT..........................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................ATTCACATTGATGTACGTAAGAA-----------.................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAATTCC..............................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
................................AATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGA..............................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAATTCAT.............................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GTTTCTGTGTTGCCTCCGAT............................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................AATCACTTT-----------GCTTGGAATTC...............................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................TTCTGTGTTGCCTCCGATTGAAAGC.....................................................................................................................................................................................2512.002000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AAATCACTTT-----------GCTTGGAATTT...............................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000
..................................TG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGA..............................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AAGTGGTTTCTGTGTTGCCTCCGC.............................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................AGAA-----------TTCA---TCACGAAGTGG...............................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GTGGTTTCTGTGTTGCCTCCGATTGAA........................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................ACTTT-----------GCTTGGAATTCAC.............................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................AA-----------TTCA---TCACGAAGTGGTTTCG..........................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAAACAAACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................TTCACATTGATGTACGTAAG..............................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CACTTT-----------GCTTGGAATTCACATTGAT.......................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................AAGTGGTTTCTGTGTTGCCTC................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CGAAGTGGTTTCTGTGTTGCCTC................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................TCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTG..................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................CACGAAGTGGTTTCTGTGTTGCCT.................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CAAACAAACAAATCAAAATG--A--A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................CCTCCGATTGAAAGCAGAA-TATTCA..........................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
droSim2
TCAAA-CAAA------CAAACAAGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCGGCAGAAATCACTTT-----------GCTGGGAATTCACATTGATGTACGTAAGAA-----------TTCA---TCACTGAGTGGTTTTTGTGTTGCCTCCGTTTGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................AAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGT......................................................................................................................................................................................................................................................................................................2012.00201100000000000000
................................................................................................................................................................................................................................................................................................................................CAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCT.......................................................................................2212.00220000000000000000
....................................................................................................................................................................................................................................................................TAAGAA-----------TTCA---TCACTGAGTGGTT.............................................................................................................................................................................................................2311.00100000000001000000
.....................................................................................................................................................................................................................................................TCACATTGATGTACGTAAG..............................................................................................................................................................................................................................................1911.00100000100000000000
........................CAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GA.........................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...................................................................................................................................................................................................................................................ATTCACATTGATGTACGTAAGAA-----------TT...............................................................................................................................................................................................................................2511.00100010000000000000
.................................ATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCGGC.................................................................................................................................................................................................................................................................................................2211.00100000000000100000
.........................................................................................................................................................................................................................................................................................................................TTGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCTA......................................................................................3011.00100000010000000000
..........................................................................................................................................................................................................................................................TTGATGTACGTAAGAA-----------TT...............................................................................................................................................................................................................................1811.00100000000000100000
....................................................................................................................................................................................................AATCG--GAGGTGCGGCAGA..............................................................................................................................................................................................................................................................................................1811.00100100000000000000
.........................................................................................................................................................................................................................................................................A-----------TTCA---TCACTGAGTGGTTTTT..........................................................................................................................................................................................................2111.00100000000010000000
...........................................................................................................................................................................................................................................................................................................TGTGTTGCCTCCGTTTGAAAGCAGA..................................................................................................................................................................................2511.00100000001000000000
..........................................................................................................................................................................................................................................................................................................TTGTGTTGCCTCCGTTTGAAAGCA....................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................GAAATCACTTT-----------GCTGGGA...................................................................................................................................................................................................................................................................1811.00100010000000000000
................................AATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGT......................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
TCAAA-CAAA------CAAACAAGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGAAATCACTTT-----------GCTGGGAATTCACATTGATGTACGTAAGAA-----------TTCATCATCACTGAGTGGTTTTTTTGTTGCCTCCGTTTGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................TCACATTGATGTACGTAAGAA-----------TTC..............................................................................................................................................................................................................................2412.0020020
.................................................................................................................................................................................................................................................GAATTCACATTGATGTACGTAAG..............................................................................................................................................................................................................................................2311.0010100
....................................................................................................................................................................................................................................................TTCACATTGATGTACGTAAGA.............................................................................................................................................................................................................................................2111.0010010
........................................................................................................................................................................................................................AATCACTTT-----------GCTGGGAAT.................................................................................................................................................................................................................................................................1811.0010010
.........................................................................................................................................................................................................................................................................................................TTTTTGTTGCCTCCGTTTGAAAGCA....................................................................................................................................................................................2511.0010010
..............................................................................................................................................................................................................................TTT-----------GCTGGGAATTCACATTGATGTAC...................................................................................................................................................................................................................................................2611.0010010
.......................................................................................................................................................................................................................................................ACATTGATGTACGTAAGAA-----------TT...............................................................................................................................................................................................................................2111.0010010
..........................................A--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTGCTGCAGA..............................................................................................................................................................................................................................................................................................2011.0011000
.....................................................................................................................................................................................................................................................TCACATTGATGTACGTAAGAA-----------TTCATC...........................................................................................................................................................................................................................2711.0010100
............................................................................................................................................................................................................................ACTTT-----------GCTGGGAATTCACATTGATGT.....................................................................................................................................................................................................................................................2611.0010010
.........................................................................................................................................................................................................................................................................................................TTTTTGTTGCCTCCGTTTGAAAGC.....................................................................................................................................................................................2411.0010010
......................................................................................................................................................................................................................................................CACATTGATGTACGTAAGAA-----------TTC..............................................................................................................................................................................................................................2311.0010010
..............................AAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GAGGTG.....................................................................................................................................................................................................................................................................................................2111.0010010
..........................................................................................................................................................................................................................................................TTGATGTACGTAAGAA-----------TTC..............................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................TGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------.............................................................................................2211.0010100
........................................................................................................................................................................................................................................................CATTGATGTACGTAAGAA-----------TTCATC...........................................................................................................................................................................................................................2411.0010010
droYak3
TCAAA-CAAA------C----AAACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GCGGTGGTGCAGAAATCACTTA-----------GCTCTGAATTTACATTGATGTACGTAAGAA-----------TTCG---TCACGAAGTGATTTGTGTGCCGCCGCCGCTTAAAAGCAGAAATATTTAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae
........................................................................................................................................................................................................G--GCGGTGGTGCAGAAATCAC........................................................................................................................................................................................................................................................................................2012.0020020000000
..................................................................................................................................................................................................................................................................................................AGTGATTTGTGTGCCGCCGCCGC.............................................................................................................................................................................................2312.0020011000000
.....................................................................................................................................................................................................................................................................................................GATTTGTGTGCCGCCGCCGC.............................................................................................................................................................................................2012.0020110000000
.....................................................................................................................................................................................................................................................TTACATTGATGTACGTAAGAA-----------TTC..............................................................................................................................................................................................................................2411.0010000001000
................................................................................................................................................................................................................................................................................................GAAGTGATTTGTGTGCCGCCGCCGCT............................................................................................................................................................................................2611.0010010000000
...........................................................................................................................................................................................................................CACTTA-----------GCTCTGAATTTACATT..........................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................AAGAA-----------TTCG---TCACGAAGT.................................................................................................................................................................................................................1811.0010001000000
...................................................................................................................................................................................................................................................................................................GTGATTTGTGTGCCGCCGCCGCT............................................................................................................................................................................................2311.0010001000000
.......................................................................................................................................................................................................................................................ACATTGATGTACGTAAGAA-----------TT...............................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................ACATTGATGTACGTAAGAA-----------TTC..............................................................................................................................................................................................................................2211.0010001000000
...................................G--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GCGGTGGTGCAGAAAT...........................................................................................................................................................................................................................................................................................2611.0010000001000
................................................................................................................................................................................................................................................TGAATTTACATTGATGTACGT.................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................AAGTGATTTGTGTGCCGCCGCCG..............................................................................................................................................................................................2311.0010010000000
.................................................................................................................................................................................................................................................................................................AAGTGATTTGTGTGCCGCCGCCGC.............................................................................................................................................................................................2411.0010010000000
..........................AATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GCGGT......................................................................................................................................................................................................................................................................................................2411.0010000001000
................................AATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CAATCG--GCGGTGGT...................................................................................................................................................................................................................................................................................................2111.0010000001000
.........................................................................................................................................................................................................................................................ATTGATGTACGTAAGAA-----------TTCG---T.........................................................................................................................................................................................................................2211.0010000001000
....................................................................................................................................................................................................................................................................TAAGAA-----------TTCG---TCACGAAGTGATTTGTG.........................................................................................................................................................................................................2711.0010000001000
................................................................................................................................................................................................................................................................................................GAAGTGATTTGTGTGCCGCCGCCGCTT...........................................................................................................................................................................................2711.0010100000000
.....................................................................................................................................................................................................................................................................................................GATTTGTGTGCCGCCGCC...............................................................................................................................................................................................1811.0010100000000
.......................................................................................................................................................................................................................................................................................CG---TCACGAAGTGATTTGTGTGCCGC...................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................................................................................AATTTACATTGATGTACGT.................................................................................................................................................................................................................................................1911.0010000001000
droEre2
TCAAA-CAAA------C----AAACAAATCAAAATG--A--G-----------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGGTGCAGAAATCCCTTT-----------GCTCGGAATTTACGTTGATGTACGCAAGAA-----------TTCG---TCACGAAGTGATTTCTGTGCCGCCTCCGCTTGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACCTAAAAATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head
......................................................................................................................................................................................................................................................................................TCG---TCACGAAGTGATTTCTGTGC......................................................................................................................................................................................................2312.002000002
......................................................................................................................................................................................................................................................................................TCG---TCACGAAGTGATTTCTGTG.......................................................................................................................................................................................................2212.002000011
..........................................................................................................................................................................................................................................................................................................................TGAAAGCAGAA-TATTCAA-A---------------------------------------C---------------------GA-----------AAACC........................................................................................2711.001100000
..................................................................................................................................................................................................................TGCAGAAATCCCTTT-----------GCTCGGAATT................................................................................................................................................................................................................................................................2511.001100000
......................................................................................................................................................................................................................................................................................TCG---TCACGAAGTGATTTCTG.........................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................................................ATTTACGTTGATGTACGCA................................................................................................................................................................................................................................................1911.001000001
...................................................................................................................................................................................................................................................ATTTACGTTGATGTACGCAAGAA-----------TTC..............................................................................................................................................................................................................................2611.001000010
.....................................................................................................................................................................................................................................................................................................GATTTCTGTGCCGCCTCCGCTTG..........................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................GAA-----------TTCG---TCACGAAGTGATTT............................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................GTTGATGTACGCAAGAA-----------TTCG---T.........................................................................................................................................................................................................................2211.001000010
.................................................................................................................................................................................................................................................................................................AAGTGATTTCTGTGCCGCCTCCGCTTGA.........................................................................................................................................................................................2811.001100000
................................................................................................................................................................................................................................T-----------GCTCGGAATTTACGTTGATGTACGCA................................................................................................................................................................................................................................................2711.001100000
......................................................................................................................................................................................................................................................TACGTTGATGTACGCAAGAA-----------TTC..............................................................................................................................................................................................................................2311.001100000
...........................ATCAAAATG--A--G-----------------------------------------------------------------------------------------------------------------------------------------------------------------GAGGTGGTGCAGAA.............................................................................................................................................................................................................................................................................................2511.001000001
...............................................................................................................................................................................................................................................................................................CGAAGTGATTTCTGTGCC.....................................................................................................................................................................................................1811.001000100
.....................................................................................................................................................................................................................................................TTACGTTGATGTACGCAAGAA-----------TTCG---T.........................................................................................................................................................................................................................2611.001000010
....................................................................................................................................................................................................................................................................................................TGATTTCTGTGCCGCCTCCGCTTG..........................................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................AATTTACGTTGATGTACGCA................................................................................................................................................................................................................................................2011.001000001
.....................................................................................................................................................................................................................................................TTACGTTGATGTACGCAAGA.............................................................................................................................................................................................................................................2011.001000010
.............................................................................................................................................................................................................GGTGGTGCAGAAATCCCTTT-----------GCTCGGA...................................................................................................................................................................................................................................................................2711.001010000
.....................................................................................................................................................................................................................................................TTACGTTGATGTACGCAAGAA-----------TTC..............................................................................................................................................................................................................................2411.001000010
................................................................................................................................................................................................................................................GGAATTTACGTTGATGTACGC.................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................TGATGTACGCAAGAA-----------TTCG---TCA.......................................................................................................................................................................................................................2211.001000010
....................................................................................................................................................................................................................................................TTTACGTTGATGTACGCAAGA.............................................................................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................................................................................TGATTTCTGTGCCGCCTCC...............................................................................................................................................................................................1911.001100000
..............................................................................................................................................................................................................GTGGTGCAGAAATCCCTTT-----------GCTCGGAA..................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................AGAAATCCCTTT-----------GCTCGGAATT................................................................................................................................................................................................................................................................2211.001000010
.........................................................................................................................................................................................................................................................GTTGATGTACGCAAGAA-----------TTC..............................................................................................................................................................................................................................2011.001000001
droEug1
ACAAA-CAAACAACAACAAACAAACAAATGAAAACA--A---ACAATATTTAAAGCAAATATACATTTGATTTTTTTTAGTTATAAGAACTCTAGTAAATTTTTTTCTAGTATTAAGTGCAATTTCTGTTCTACTTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGCT-CTAAACAA----------------------AGAAAACAAAAAACGAAAATGAAATGAAATGAAATGTAAGAAAACGAAGCAAA-----------CCAACTCAAAACAAA------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TCAAA-CAA--------------GCAAATCAAAATG--A--AA-----------------------------------------------------------------------------------------------------------------------------GTTGAAAGATGAAAATGAGAAATGAAACTAT----------------------------------------------------------------------------------------------------------------------AAGCAGAA-TATTCAAAA---------------------------------------C---------------------G------------AAACCCA---ATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AACAA-AAA---------------AAGATAAAAATAACA--AC--------------------------------------------------------------------------------------------------------------------------------------------------------ATATA-CAGGAGTGTCACAGAAATCTCTTCCAACCGAAGACGGTTGGATTTTGCATTGATGCACGTAAGAACTTTAACGGATTTCG---GTTGGAAATAATTTCTGTGACACCCCCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TCAAA-CAA-------------AACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-----------AAACCTAAAGATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TCAAA-CTA-------------AACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-----------AAACCTAAAGATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCAAA-CAA--------------ACAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTATA---AAGAT------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-----------AAACCTAAAGATATGCATATTAAATATTCAAGGCGTTG-----------------CATCTACACATTTAAAATAGGCATAAACAAAAAATAGTSizeHit CountTotal NormTotal
No Reads
droKik1
TCAAAACAA------------AAACTAATCAAAATGGCA--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAAACGAAA------------------------C----GAAAC---------------------GA-----------AAACCTAAAGATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TCAAAACAA-------------AGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------TAAGCAGAA-TATTCAAAACAGTAAGGAAGGTAGACAAAAAACAAAAAAC----AAAAA---------------------TA-----------AAACCTAAAGATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................A-TATTCAAAACAGTAAGGAAGGTA.........................................................................................................................................................2411.001001000
................................................................................................................................................................................................................................................................................................................................................................AAAAAACAAAAAAC----AAAA................................................................................................................................18200.051010000
droBip1
TCAAAACAA-------------AGCAAATCAAAATG--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------TAAGCAGAA-TATTCAAAACAGAAAGGAAGGTAGACAAAAAACAAAAAAC----ATAAA---------------------TA-----------AAACCTAAAGATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TCAAA-CAAA------CAAACAAACAAATCAAAATG--G--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-AA-ATGAGAAAAACCTAAAGATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................AAATG--G--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAG...................................................................................................................................................................................1911.0010100000000
.............................CAAAATG--G--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGA..................................................................................................................................................................................2211.0010000100000
............................................................................................................................................................................................................................................................................................................................AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------..........................................................................................................1911.0010010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................A-AA-ATGAGAAAAACCTAAAG...................................................................................2011.0010001000000
............................................................................................................................................................................................................................................................................................................................AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-AA-....................................................................................................2311.0010100000000
droPer2
TCAAA-CAAA------CAAACAAACAAATCAAAATG--G--AA--------------------------------------------------------------------------------------------------------------------------------------------------------CTAT---------------------------------------------------------------------------------------------------------------------AAAGCAGAA-TATTCAAAA---------------------------------------C---------------------GA-AA-ATGAGAAAAACCTAAAGATATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATATT-CAAA------AGAAAAAAAAAACAAAAACA--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----------------------------------------------------------------------------------------------------------------------AGGCAAAACTGAACAG-A---------------------------------------A---------------------GC-----------AAATCTAAAGATATC------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................ACAG-A---------------------------------------A---------------------GC-----------AAATCTAAAGAT.................................................................................2011.00100100
...................................................................................................................................................................................................GAA-----------------------------------------------------------------------------------------------------------------------AGGCAAAACTGAACAG-A---------------------------------------A---------------------GC-----------A............................................................................................2411.00100010
..............................................................................................................................................................................................................................................................................................................................GGCAAAACTGAACAG-A---------------------------------------A---------------------GC-----------.............................................................................................1911.00100010
..........................................A--------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----------------------------------------------------------------------------------------------------------------------AGGCAAAACTGAACAG-A---------------------------------------A---------------------GC-----------A............................................................................................2511.00110000
..........................AACAAAAACA--A--AA--------------------------------------------------------------------------------------------------------------------------------------------------------GAA-----------------------------------------------------------------------------------------------------------------------AG.......................................................................................................................................................................................1860.17100010
droVir3
TTAAA-CAAA------TATACA------TCTGATTT--T--TT---------------------------------TAGTTTGTAAG-ACTCTAGAAAATTTTTTCTTAGTATT-AGTGCAATTTTTGTTCTTCTTCTTGCTCCCAAAATATTCAAAACAAAGTAAATAATACAAAACAAAACAAAACAAA------------------------------------------------------------------------------------------------------------------------------------AA-AATGCAA-A---------------------------------------T---------------------CAAAATATAAAAATAACCG--AATTATG------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
...................................T--T--TT---------------------------------TAGTTTGTAAG-ACTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................AAACAAA------------------------------------------------------------------------------------------------------------------------------------AA-AATGCAA-A---------------------------------------T---------------------CA........................................................................................................2011.00100100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGTTCTTCTTCTTGCTCCCA....................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................TGCAA-A---------------------------------------T---------------------CAAAATATAAAA..............................................................................................1911.00100000000000000000010000000000000000000000000000000000000000000
........................................................................................................TCTTAGTATT-AGTGCAATTTTT.......................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGTTCTTCTTCTTGCTCCC.....................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000000000010000000000000000000000000000000000000000000
................................................................................................................................................................................ACAAAACAAAACAAA------------------------------------------------------------------------------------------------------------------------------------AA-AATGC...........................................................................................................................................................................2211.00100000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................AAACAAA------------------------------------------------------------------------------------------------------------------------------------AA-AATGCAA-A---------------------------------------T---------------------CAAAA.....................................................................................................2311.00100100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................ATACAAAACAAAACAAAACA.........................................................................................................................................................................................................................................................................................................................2070.14100000000000000000000010000000000000000000000000000000000000000
droMoj3
AGAAA---AC------TGAAAATGCAAATCAAAATA--A--G---------------------------------------------------------------------------------------------------------------------------------------------------------TAATAA--CAAATAACCAACAAATATTA---------------------------------TAAATA-------------------------------------------------------------AA-TATTCGAAA---------------------------------------C---------------------G-----------------------------------------------TTTTACATCCAAAACATATTCAAATACAGATTTCAAATAC--ATA-------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAAACATATTCAAATACAGATTT.........................2711.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACATCCAAAACATATTCAAATACA..............................2711.001100000
..............................................................................................................................................................................................................................A---------------------------------TAAATA-------------------------------------------------------------AA-TATTCGAAA---------------------------------------C---------------------G-----------------------------------------------T.........................................................2111.001100000
droGri2
CACAA-AAAA------TAAA-----AATTAAAAATA--TGCAT--------------------------------------------------------------------------------------------------------------------------------------------------------ATAT-----AAATAT------------------------------TGAATATATATATATGTATATATATA-----------TA----------------------------------------TATATA-TATTCAT-A---------------------------------------T---------------------GT-----------ATA--TATATATATA------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 01/23/2015 at 12:38 AM