ID:

dme-mir-307b

 Coordinate:

chr2R:5508739-5508858 +

 Confidence:

Known Ortholog

 Type:

antisense_to_intron

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Sense Strand Reads

ACACATACAATTGTTAATATTTTTATTACATGTATTTCACTGGTGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCGAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAATGCTGCTAACTTTGCATCGGTTTCACTTTTTGTCTAGACAAGCAACTTTTGCCACTTCATTT
******************************************************************.((((.((((...((((((((((...((.(((((((..................))))))).))...))))))))))...)))).))))....************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V148
mbn2 		V073
mbn2 		SRR060652
hs-Penelope_testes_total
 V138
Male cold body
 V137
Male aged head
 V125
ML-DmD9		 V136
Male aged body
 SRR060643
A2_testes_total
 SRR060645
yw67c23(2)_testes_total
 V132
ML-DmD32 		GSM322543
male head #1
 GSM609219
GM2 cell		 SRR060650
A1_testes_total
 V126
CME L1 		V085
CME W2 wing disc		 GSM322219
2-4day pupae #1
 V128
S3 		V127
G2		 V142
Oxidation_female_body
 GSM240749
female head
 V031
GM2 cell		 V079
Oxidation, female head
 SRR298537
strain: vret148-60/vret148-60genotype/variation: Vret Mutant
 V131
ML-DmD16-c3 		GSM467731
Dmel_loq_sRNAseq
 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1
 GSM609227
CMEW1 Cl.8+ cell		 V074
S3		 V141
Heat_female_body
 GSM399107
male body #2
 V140
Dessication_female_body
 V078
Desiccation, female head
 GSM609226
CMEW1 Cl.8+ cell		 GSM424739
S2 parental
 SRR029030
dcr-2 knockdown
 GSM609248
ML-DmD9 cell		 GSM609234
CS  male total RNA  
 V092
dcr-2[G31R] male total RNA  
 GSM360262
0-2d pupae
 SRR032095
AGO1 IP dcr2 knockdown
AGO1
 V129
ML-DmBG1-c1		 V080
Starvation, female head
 SRR029028
untreated (mock)
 GSM609247
heat female head
 GSM609250
ML-DmD32 cell		 V135
CME W2 (wing disc line)		 V139
Cold_female_body
 V147
1182-4H cell		 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 V077
cold, female head
 GSM467729
Dmel_wt_sRNAseq
 GSM286604
0-1h #3 (7)
 SRR001338
IR_non-beta-eliminated
 SRR031696
Ago1-associated small RNAs from Oregon R
AGO1
 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 SRR341115
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 GSM609224
female, one day
 GSM467730
Dmel_r2d2_sRNAseq
 GSM399106
female body #2
 GSM286602
male body
 SRR097865
Drosophila S2-NP cells
 SRR097866
Drosophila S2-NP cells
 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 GSM609251
aged female head
 V022
ML-DmD32 cell		 V038
Felix sample S2 only
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2
 GSM280088
S2cell (AGO1IP)
AGO1
 GSM322245
3rd instar #1
 GSM322338
2-4day pupae#2
 GSM322533
female head #1
 GSM399110
KC-48 #2
 GSM286603
female body
 SRR014275
Ovary_rep1_LK_P
 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR097867
Drosophila S2-NP cells
 SRR298712
strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant
 V012
Dcr2 male (Katsutomo, whole fly?)
 GSM399101
kc167 cell		 GSM609249
ML-DmD21 cell		 GSM609223
male, one day
 V091
fGS/OSS total  		 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1
 V145
S2-DRSC		 V146
S1 cell		 SRR031692
Total small RNAs from Oregon R
 GSM628271
r2d2[1] ovary total RNA  
 GSM379051
Armi Mutant
 GSM286601
male head
 GSM360260
0-1d Pupae (w)
 S6
0-1,2-6,6-10h embryo
 SRR029633
total small RNAs from hen1 homozygous flies
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR341116
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 SRR341118
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 V006
r2d2 female: possibly heterozygous
 GSM609217
MLDmD20c5		 V014
DTT 8h
 GSM399100
Kc167 cell		 GSM609221
1182-4H cell		 V0632
wt ovary AGO1-IP, reseq
AGO1
 V0642
ago2 ovary, AGO1-IP, reseq
AGO1
 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1
 GSM609229
embryo 2-6hr
 GSM609238
embryo 14-24hr
 V086
female body, aged
 GSE24544
dcr-2[L811fsX] ovary total RNA
 V134
ML-DmD8 		SRR065807
Piwi-IP_squ_het_ovaries
 V032
S1 cell		 GSM609231
ago2[414], ovary, AGO1IP
AGO1
 GSM180328
adult heads (female heads, male heads)
 GSM379055
Flam Mutant
 GSM379056
Krimp Heterozygote
 GSM379058
Piwi Heterozygote
 GSM379063
Vasa Heterozygote
 GSM379067
SpnE Mutant
 GSM385821
OSS_s7		 GSM286605
2-6h #1 (8)
 GSM286611
6-10h #2 (11)
 GSM272652
S2 -48 Biological Replicate #1
 GSM322208
3rd instar #2
 GSM361908
s2-48 Biological Replicate #2
 GSM609243
KC+48 #1
 GSM609244
KC+48 #2
 SRR001664
homozygous_dcr-2_untreated
 SRR014269
Embryo_0-2hrs_rep1_LK_0_2hr_Emb
 SRR014270
Embryo_0-2hrs_rep1_NA_0_2hr_Emb
 SRR014278
Ovary_rep1_w1118(fem)_x_Har(male)_F1
 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 GSM609235
CMEL1		 V015
DreRFHV148h
 V023
Dcr2 female head
 V036
ML-DmD20c5 cell		 V037
Felix sample +mirtrons
 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1
 GSM609232
r2d2[1] ovary total RNA  
 GSM628272
ago2[414] ovary total RNA
 V130
ML-DmBG3-c2 		V144
OSC		 SRR031703
Total small RNAs from r2d2 homozygous flies
 GSM609225
ML-DmBG3-C2
..........................................................................................................................TCACACCCAGGTTGAGTGAGTC............................................................................ 22 0 1 893.00 893 272 281 33 15 14 14 20 24 30 8 8 6 11 6 6 8 3 7 3 4 2 3 7 3 3 1 3 3 3 7 3 0 2 10 0 1 4 4 3 3 0 0 2 1 3 2 2 1 0 1 1 0 0 1 2 3 4 0 0 1 1 0 0 0 1 1 1 2 0 1 2 0 0 3 1 1 0 1 1 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 1 1 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................. 21 0 1 663.00 663 255 170 13 22 19 15 14 20 9 11 0 4 4 3 3 2 5 3 3 2 7 3 3 2 0 4 0 4 2 1 1 3 0 0 7 2 3 2 0 1 3 2 0 0 1 1 1 0 0 2 0 0 2 3 2 2 0 0 1 0 1 0 0 0 1 1 0 0 0 1 0 0 2 0 1 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0
.................................................................................TCACTCAAGGAGGTTGTGATGG..................................................................................................................... 22 0 1 593.00 593 253 137 8 20 18 14 16 3 2 10 5 6 2 6 3 3 3 5 7 1 1 1 1 4 0 3 0 1 5 1 4 3 0 0 0 3 1 0 0 1 0 2 5 1 2 3 2 3 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 4 0 0 1 0 0 0 1 0 1 0 0 0 1 1 0 0 0 0 2 0 2 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGTCC........................................................................... 23 1 1 205.00 205 79 58 0 3 1 3 4 2 2 1 6 2 0 3 2 5 1 1 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 1 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 1 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................CTCACTCAAGGAGGTTGTGATG...................................................................................................................... 22 0 1 153.00 153 54 46 1 1 4 2 1 0 4 2 0 1 2 1 3 0 5 0 1 0 0 0 1 1 0 0 4 1 0 1 0 1 3 0 2 0 0 0 1 0 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCACTCAAGGAGGTTGTGATG...................................................................................................................... 21 0 1 130.00 130 41 39 5 4 6 5 4 1 1 0 0 1 2 1 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 2 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATCACACCCAGGTTGAGTGAGT............................................................................. 22 0 1 66.00 66 26 19 1 1 0 2 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 2 0 0 1 0 0 0 0 1 0 0 1 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAG.............................................................................. 20 0 1 56.00 56 22 13 2 3 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGTT............................................................................ 22 1 1 52.00 52 16 16 5 1 3 0 0 2 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGTCA........................................................................... 23 0 1 25.00 25 7 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCACTCAAGGAGGTTGTGATGGT.................................................................................................................... 23 1 1 21.00 21 13 2 0 0 0 1 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGTCT........................................................................... 23 1 1 15.00 15 7 3 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ATCACACCCAGGTTGAGTGAG.............................................................................. 21 0 1 15.00 15 6 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGA............................................................................... 19 0 1 12.00 12 3 5 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGCTGAGTGAGTC............................................................................ 22 1 1 11.00 11 2 8 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGTCCA.......................................................................... 24 1 1 10.00 10 3 3 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................GAAACTCCGTCGTGCTATC............................................................................................................................................. 19 3 8 8.63 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 44 0 0 0 0 0 0 0 0 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGAGAGTC............................................................................ 22 1 1 7.00 7 1 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CTCACTCAAGGAGGTTGTGAT....................................................................................................................... 21 0 1 7.00 7 1 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTGGAGTGAGTC............................................................................ 22 1 1 7.00 7 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGTA............................................................................ 22 1 1 7.00 7 1 3 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCACTCAAGGAGGGTGTGATGG..................................................................................................................... 22 1 1 7.00 7 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGGGAGTC............................................................................ 22 1 1 6.00 6 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGCTGAGTGAGT............................................................................. 21 1 1 6.00 6 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGATTC............................................................................ 22 1 1 6.00 6 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGCTGAGTGAGTCC........................................................................... 23 2 1 6.00 6 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTTAGTC............................................................................ 22 1 1 6.00 6 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGCGAGTC............................................................................ 22 1 1 6.00 6 2 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCACTCAAGGAGGTTGTGATGGTT................................................................................................................... 24 1 1 5.00 5 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGAGTGAGTCAA.......................................................................... 24 0 1 4.00 4 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.........................................................................................................................ATCACACCCACTTTGAATGAGTC............................................................................ 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAACACCCAGGTTGAGTGAGTCC........................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCATTTTGAGTGAGTC............................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACAGCCAGCTTGAGTGAGCC............................................................................ 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCAAGTTTGAGTGAGTCC........................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGTTGTGTGAGT............................................................................. 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TGACACCGAGGTTGAGTGAGTC............................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCACACCCAGGATGAGTGAGTCC........................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TCACTCACGGAGGTTGTGATG...................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TGTGTATGTTAACAATTATAAAAATAATGTACATAAAGTGACCACGGTCAATCAAAGCACCTATGAGACAGGACGATAGCGAGTGAGTTCCTCCAACACTACCTATGGTATAGCTTTATTGTAGTGTGGGTCCAACTCACTCAGTTTCGTTCTGTTTTACGACGATTGAAACGTAGCCAAAGTGAAAAACAGATCTGTTCGTTGAAAACGGTGAAGTAAA
*************************************************************.((((.((((...((((((((((...((.(((((((..................))))))).))...))))))))))...)))).))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM609225
ML-DmBG3-C2		 V137
Male aged head
 V125
ML-DmD9		 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1		 V080
Starvation, female head
 V130
ML-DmBG3-c2 		SRR014278
Ovary_rep1_w1118(fem)_x_Har(male)_F1
 V078
Desiccation, female head
 V079
Oxidation, female head
 V077
cold, female head
 GSM322543
male head #1
 GSM609251
aged female head
 GSM609247
heat female head
 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR031703
Total small RNAs from r2d2 homozygous flies
 GSM609248
ML-DmD9 cell		 SRR029633
total small RNAs from hen1 homozygous flies
 GSM609227
CMEW1 Cl.8+ cell		 SRR031692
Total small RNAs from Oregon R
 V131
ML-DmD16-c3 		V034
ML-DmD16c3 cell		 SRR317117
genotype: zuc_hm27/zuc_cd761stage: from 5-6 days old flies
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 V148
mbn2 		V147
1182-4H cell		 SRR031696
Ago1-associated small RNAs from Oregon R
AGO1		 V134
ML-DmD8 		GSM609234
CS  male total RNA  
 GSM609242
s2+48 #2
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 SRR317113
genotype: CG47711-delta1/CG4771-delta1stage: from 5-6 days old flies
 SRR031699
Total small RNAs from dcr-2 homozygous flies
 SRR001347
ago2_untreated
 SRR298537
strain: vret148-60/vret148-60genotype/variation: Vret Mutant
 V0642
ago2 ovary, AGO1-IP, reseq
AGO1		 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 GSM313162
dcr-2 homozygous, untreated
 SRR001349
heterozygous_dcr-2_untreated
 V073
mbn2 		V023
Dcr2 female head
 GSM313163
dcr-2 heterozygous, untreated
 V030
ML-DmD8 cell		 GSM467730
Dmel_r2d2_sRNAseq
 SRR001338
IR_non-beta-eliminated
 SRR001664
homozygous_dcr-2_untreated
 SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 GSM467729
Dmel_wt_sRNAseq
 V012
Dcr2 male (Katsutomo, whole fly?)
 GSM379057
Krimp Mutant
 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1		 GSM609249
ML-DmD21 cell		 GSM322533
female head #1
 V145
S2-DRSC		 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1		 V092
dcr-2[G31R] male total RNA  
 GSM379065
Zuc Heterozygote
 GSM609223
male, one day
 GSM609241
s2+48 #1
 GSM609221
1182-4H cell		 V031
GM2 cell		 V0632
wt ovary AGO1-IP, reseq
AGO1		 SRR298712
strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant
 GSM609219
GM2 cell		 GSM609250
ML-DmD32 cell		 SRR097865
Drosophila S2-NP cells
 GSM343833
S2R+ cell		 GSM360262
0-2d pupae
 GSM628271
r2d2[1] ovary total RNA  
 GSE24544
dcr-2[L811fsX] ovary total RNA
 SRR317110
genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 V132
ML-DmD32 		GSM240749
female head
 GSM609224
female, one day
 V008
S2-DRSC		 V015
DreRFHV148h
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1		 SRR097866
Drosophila S2-NP cells
 V074
S3		 GSM609226
CMEW1 Cl.8+ cell		 V136
Male aged body
 GSM360260
0-1d Pupae (w)
 GSM343832
S2R+ cell		 GSM609220
ML-DmD21 cell		 GSE24545
CS ovary total RNA
 SRR014275
Ovary_rep1_LK_P
 SRR014273
Ovary_rep1_Har_P
 V091
fGS/OSS total  		 GSM280088
S2cell (AGO1IP)
AGO1		 V085
CME W2 wing disc		 GSM467731
Dmel_loq_sRNAseq
 SRR014277
Ovary_rep1_NA_P
 V096
loqsKO/f00791 ovary
 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 SRR029028
untreated (mock)
 GSM609231
ago2[414], ovary, AGO1IP
AGO1		 V138
Male cold body
 GSM628272
ago2[414] ovary total RNA
 SRR032095
AGO1 IP dcr2 knockdown
AGO1		 SRR097867
Drosophila S2-NP cells
 GSM371638
S2-NP		 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 GSM286601
male head
 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1		 V036
ML-DmD20c5 cell		 GSM379051
Armi Mutant
 GSM609238
embryo 14-24hr
 V129
ML-DmBG1-c1		 GSM379056
Krimp Heterozygote
 GSM379064
Vasa Mutant
 GSM609232
r2d2[1] ovary total RNA  
 GSM361908
s2-48 Biological Replicate #2
 V140
Dessication_female_body
 SRR060643
A2_testes_total
 V006
r2d2 female: possibly heterozygous
 SRR317116
genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies
 GSM609230
CS,ovary,AGO1IP
AGO1		 SRR001339
WT_females_non-beta-eliminated
 SRR014276
Ovary_rep1_NA(fem)_x_Har(male)_F1
 SRR001345
ago2_non-beta-eliminated
 V146
S1 cell		 GSM399107
male body #2
 V142
Oxidation_female_body
 V126
CME L1 		SRR014274
Ovary_rep1_LK(fem)_x_Har(male)_F1
 V141
Heat_female_body
 GSM609239
IR- 2-18hr
 SRR060644
A2_ovaries_total
 V128
S3 		SRR029032
r2d2 knockdown
 SRR060645
yw67c23(2)_testes_total
 V127
G2		 GSM609240
IR+ 2-18hr
 GSM272652
S2 -48 Biological Replicate #1
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR029029
dcr-1 knockdown
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1		 GSM379053
Aub Mutant
 GSM609217
MLDmD20c5		 SRR060653
hs-Penelope_ ovaries_total
 SRR001343
dcr-2_non-beta-eliminated
 V022
ML-DmD32 cell		 GSM379061
Squ Heterozygote
 SRR029031
loqs-ORF knockdown
 V139
Cold_female_body
 SRR060646
yw67c23(2)_ovaries_total
 SRR001348
ago2_oxidized
 SRR001341
WT_males_non-beta-eliminated
 GSM280084
loqs-/- ovaries (18-29nt)
 SRR029030
dcr-2 knockdown
 GSM609237
ago2[414] ovary total RNA
 V086
female body, aged
 SRR060650
A1_testes_total
 GSM322219
2-4day pupae #1
 SRR032094
ago2 knockdown
 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 SRR029033
lacZ knockdown
 SRR014281
Ovary_rep1_wK(fem)_x_w1118(male)_F1
 GSM379050
Armi Heterozygote
 GSM609235
CMEL1		 GSM379059
Piwi Mutant
 GSM399105
disk #2
 GSM609222
ML-DmBG1-C1		 GSM385748
OSS_s6		 GSM275691
imaginal disc
 SRR060652
hs-Penelope_testes_total
 GSM180328
adult heads (female heads, male heads)
 SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 GSM385744
OSS_s2		 V003
dsDcr-1 (katsutomo RNA)
 GSM322208
3rd instar #2
 GSM379063
Vasa Heterozygote
 SRR065801
zuc_het(H-Y)_ovaries
 SRR065800
zuc_H-Y_ovaries
 GSM399106
female body #2
 V032
S1 cell		 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 GSM385822
OSS_s8		 GSM379054
Flam Heterozygote
 GSM385821
OSS_s7		 GSM379052
Aub Heterozygote
 GSM239041
fly heads, non beta-eliminated
 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 SRR001344
dcr-2_beta-eliminated
 SRR014282
Ovary_rep1_wK_P
 SRR014280
Ovary_rep1_w1118_P
 GSM286604
0-1h #3 (7)
 GSM379055
Flam Mutant
 SRR341115
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 GSM313161
dcr-2 heterozygous, oxidized
 GSM379060
SpnE Heterozygote
 V135
CME W2 (wing disc line)		 GSM322338
2-4day pupae#2
 SRR014279
Ovary_rep1_w1118(fem)_x_wK(male)_F1
 GSM272651
S2-48,+48, KC-48, +48 mix
 GSM379066
Zuc Mutant
 SRR032093
ago1 knockdown
 GSM239052
S2 cells, non beta-eliminated
 GSM322245
3rd instar #1
 GSM280083
dcr-2-/- ovaries (18-29nt)
 GSM280082
WT ovaries (18-29nt)
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2		 SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 GSM379067
SpnE Mutant
 GSM379062
Squ Mutant
 GSM399101
kc167 cell		 GSM313160
dcr-2 homozygous, oxidized
 SRR341118
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 V133
Sg4 		GSM399100
Kc167 cell		 GSM379058
Piwi Heterozygote
 GSM286603
female body
 GSM364902
12-24hr embryo
 GSM286602
male body
 V144
OSC		 GSM399110
KC-48 #2
 GSM609244
KC+48 #2
 SRR001337
WT_females_beta-eliminated
 SRR031693
2'-O-methylated small RNAs from Oregon R
 SRR065802
Piwi-IP_zuc_mut_ovaries
 GSM360256
1st instar #1
 SRR060651
A2_ovaries_Ago3
AGO3		 GSM609243
KC+48 #1
 GSM280087
S2cell (AGO2IP)
AGO2		 GSM360257
1st instar #2
 GSM180335
imaginal discs
 GSM609218
Sg4		 GSM286611
6-10h #2 (11)
 SRR031694
2'-O-methylated small RNAs from Oregon R
 SRR032092
mock oxidized
 SRR065804
Piwi-IP_zuc_H-Y_ovaries
 GSM180337
tissue culture cells (S2 only)
 GSM286607
6-10h #1 (10)
 SRR001340
IR_beta-eliminated
 GSM312995
WT, oxidized
 V014
DTT 8h
 GSM609229
embryo 2-6hr
 GSM180336
pupae: 0-1 day, 0-2 day, 2-4 day
 GSM280085
WT testes (18-24nt)
 GSM180334
larvae: 1st instar and 3rd instars
 S6
0-1,2-6,6-10h embryo
 GSM313164
ago2 homozygous, oxidized (technical replicate #1)
 V037
Felix sample +mirtrons
 GSM286605
2-6h #1 (8)
 SRR014269
Embryo_0-2hrs_rep1_LK_0_2hr_Emb
 GSM313165
ago2 homozygous, oxidized (technical replicate #2)
 GSM180329
adult bodies (female bodies, male bodies)
 SRR060647
A2_ovaries_FLAG-Ago2
AGO2		 SRR065806
Piwi-IP_squ_mut_ovaries
 GSM180333
late embryo (12-24)
 SRR001346
ago2_beta-eliminated
 SRR010955
Aub IP in Ago3 heterozygotes
 SRR014268
Embryo_0-2hrs_rep1_HAR_0_2hr_Emb
 V038
Felix sample S2 only
 GSM272653
KC -48 #1
 SRR065807
Piwi-IP_squ_het_ovaries
 SRR010957
Aub IP in Ago3 trans-heterozygotes
 GSM286613
0-1hr #1 (A)
 SRR010958
Piwi IP in Ago3 trans-heterozygotes
 SRR014270
Embryo_0-2hrs_rep1_NA_0_2hr_Emb
 SRR010954
Aub trans-heterozygotes, oxidized
 SRR014272
Embryo_0-2hrs_rep1_wK_0_2hr_Emb
 SRR032096
AGO2 IP dcr2 knockdown
AGO2		 GSM239050
fly heads, beta-eliminated
 GSM246084
D. melanogaster adult male heads 454
 GSM286606
2-6h #2 (9)
 SRR014271
Embryo_0-2hrs_rep1_w1118_0_2hr_Emb
 GSM343287
Drosophila Toll 10b mutant embryos
 GSM239051
S2 cells, beta-eliminated
AGO2		 SRR060648
A2_ovaries_FLAG-Aub
 SRR065805
Piwi-IP_zuc_het(H-Y)_ovaries
 GSM424739
S2 parental
 SRR010952
Ago3 trans-heterozygotes, oxidized
 SRR010953
Aub heterozygotes, oxidized
 SRR001342
WT_males_beta-eliminated
 SRR010956
Piwi IP in Ago3 heterozygotes
 SRR010959
Ago3 IP in heterozygotes
AGO3		 SRR060649
A2_ovaries_FLAG-Piwi
 GSM180332
mid embryo (6-10)
 SRR341116
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 GSM180331
early embryo (2-6)
 SRR010951
Ago3 heterozygotes, oxidized
 SRR065803
Piwi-IP_zuc_het(mut)_ovaries
 GSM180330
very early embryo (0-1)
 GSM280086
WT ovaries (AGO2IP)
AGO2		 SRR010960
wt, oxidized
 SRR341117
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
..............................................................................GCGAGTGAGTTCCTCCAACACT........................................................................................................................ 22 0 1 198975.00 198975 14201 10559 4043 6325 5674 9826 6647 6944 5492 5145 4064 2109 1455 2423 1318 3297 1917 4776 1926 3246 2619 1214 983 1378 1396 2174 2344 3578 1168 1133 1638 1638 1697 1686 1175 1790 1334 2685 1563 846 1474 837 1459 1242 185 419 846 400 217 665 1360 1461 864 903 472 588 1794 954 1686 652 932 786 573 1600 488 861 1232 811 477 446 578 441 701 698 705 1111 312 348 403 975 714 732 794 453 569 335 472 465 484 859 741 919 83 468 247 621 436 505 643 318 763 621 427 343 318 326 514 283 239 425 310 278 252 200 377 522 191 218 284 251 199 287 184 305 343 383 134 277 188 271 279 250 370 313 217 194 5 209 193 154 171 401 115 143 121 291 237 169 81 109 112 149 151 226 263 134 149 141 158 113 152 135 164 87 101 17 100 250 144 0 28 216 112 131 131 104 102 151 1 2 91 19 61 117 64 69 47 42 68 58 66 57 35 118 51 27 49 52 65 76 35 61 67 33 47 39 25 24 43 44 38 20 19 29 15 19 25 37 18 19 3 23 12 25 11 27 7 14 12 1 2 26 33 6 0 1 2 12 7 6 6 5 4 6 10 4 5 8 5 7 19 5 6 5 14 7 1 3 1 3 0 3 0 0 7 2 2 6 1 0 0 4 4 0 0 0 1 0 2 0 0 0 0 0 0 0 1 0 0
.............................................................................AGCGAGTGAGTTCCTCCAACACT........................................................................................................................ 23 0 1 191884.00 191884 8528 4501 3404 5188 1279 9439 9640 1588 1388 1146 2616 693 327 1299 3039 3668 1486 3246 1151 4000 2776 3860 2370 1221 1587 1780 2965 1220 2760 3335 2656 1233 2434 1066 952 2041 2196 738 995 720 1066 242 1109 1406 2283 864 734 2187 1771 322 1551 1089 2160 531 462 1362 592 1907 1088 1546 991 1245 1212 996 663 1085 957 786 1438 1668 1474 1184 1021 1155 377 721 236 159 1232 852 676 539 876 1206 417 573 1278 895 903 581 515 539 366 752 652 642 614 674 423 859 221 487 266 740 104 429 390 739 696 647 460 621 694 513 422 468 124 573 414 164 735 357 140 279 345 446 572 326 563 436 378 286 340 396 508 280 8 200 400 393 169 223 213 174 382 57 225 429 95 112 231 175 325 202 207 287 205 190 237 357 253 168 216 272 129 128 305 186 91 2 126 59 304 189 243 297 157 82 9 53 172 87 151 81 40 75 146 175 72 77 86 37 122 73 112 98 109 95 61 21 67 102 100 22 27 68 73 33 22 13 70 18 41 53 54 19 41 37 31 10 1 16 36 38 29 14 20 36 13 14 0 20 6 20 18 3 0 0 25 18 9 23 9 9 8 3 10 0 8 3 4 12 8 22 8 5 5 1 12 7 9 6 0 6 3 0 1 2 3 0 1 0 0 0 2 0 1 2 0 2 1 0 0 1 0 1 0 0 0
...............................................................................CGAGTGAGTTCCTCCAACACT........................................................................................................................ 21 0 1 185362.00 185362 7746 7011 17226 2710 10408 2642 3079 9406 9081 9922 2514 10311 10048 545 387 4139 586 1954 362 960 2127 249 295 5170 4469 860 985 923 313 336 421 816 258 1154 243 1070 951 759 1075 218 1461 3637 720 1634 87 195 191 131 134 3305 856 1280 877 1041 3339 974 585 479 182 212 1288 812 610 363 1365 666 227 940 111 237 227 142 167 184 387 133 1570 1823 248 139 395 782 206 107 1050 915 95 287 323 53 307 118 26 233 101 134 138 325 303 96 322 124 288 208 234 500 391 220 16 99 201 158 124 83 284 201 777 56 307 314 43 243 754 132 205 66 72 191 15 109 98 120 93 88 14 36 6 99 95 160 335 31 140 279 33 30 145 42 33 321 148 120 38 55 116 30 61 46 63 44 130 210 160 15 69 18 10 55 120 0 15 82 22 61 44 11 79 137 0 2 102 13 143 115 34 84 32 33 34 43 79 30 51 25 9 39 18 40 34 92 5 17 15 53 28 38 28 44 24 49 10 74 26 10 2 16 10 1 3 8 8 19 4 0 6 13 2 5 31 0 4 14 2 4 0 3 4 29 2 4 8 2 6 13 7 2 3 12 5 2 0 1 3 0 1 6 0 12 0 1 0 1 6 1 1 5 3 0 4 0 6 0 0 6 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGCGAGTGAGTTCCTCCAACAC......................................................................................................................... 22 0 1 65589.00 65589 2303 1420 741 1053 655 1907 2356 690 561 478 1878 191 84 2188 1312 899 1918 815 2041 920 607 2192 704 328 383 352 747 394 904 1826 1737 629 1288 523 303 621 449 315 485 249 172 110 546 307 364 731 250 1660 349 78 337 281 430 207 88 422 311 348 528 565 227 434 337 247 247 259 308 185 508 340 398 816 450 368 239 325 67 53 273 231 179 124 212 440 87 132 307 263 249 159 127 136 85 278 79 168 287 94 125 209 62 132 163 137 88 72 76 149 298 157 131 141 127 188 124 75 28 374 59 82 173 213 36 174 68 112 128 83 102 98 100 124 65 66 101 130 1 159 57 46 29 78 177 31 131 33 59 76 56 67 31 90 77 58 43 92 82 29 75 107 44 47 30 105 76 24 109 34 48 0 22 35 70 37 61 44 57 16 1 16 24 15 25 48 16 38 48 23 26 26 12 12 27 13 23 43 41 22 22 16 45 27 21 11 19 10 15 6 18 16 21 9 9 14 29 7 8 6 15 12 0 0 6 10 9 1 10 5 2 3 3 0 0 6 6 3 3 0 5 8 7 5 3 0 2 9 2 3 2 11 0 3 4 0 1 4 3 0 4 2 6 2 0 0 1 4 0 3 6 0 0 1 1 0 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0
..............................................................................GCGAGTGAGTTCCTCCAACAC......................................................................................................................... 21 0 1 34800.00 34800 1322 3405 452 1357 2093 725 706 1504 1508 1256 896 520 209 1029 618 417 916 594 577 319 297 77 397 158 185 399 283 668 98 115 201 291 103 295 153 204 148 474 270 130 128 114 257 149 50 169 117 66 27 109 120 175 94 514 31 181 432 94 352 73 95 186 127 172 101 134 157 71 57 66 85 47 30 127 154 233 53 64 58 142 89 84 115 32 40 59 72 71 65 156 75 151 11 85 16 108 70 29 95 50 105 79 95 22 77 22 34 19 45 68 30 26 17 17 53 34 35 18 37 40 27 55 16 51 46 37 24 44 13 44 29 38 31 23 15 20 1 41 19 3 12 74 24 27 17 53 36 19 38 19 18 25 20 36 20 16 23 13 22 0 13 13 13 12 26 4 10 24 59 0 4 18 13 13 12 9 26 22 0 0 7 3 2 21 7 20 5 2 13 7 7 6 3 11 2 11 3 1 6 20 5 6 6 10 3 3 3 5 2 2 5 2 2 4 1 5 10 0 6 5 1 11 2 1 0 1 8 1 3 0 0 0 0 0 0 1 0 0 2 0 1 1 1 1 1 0 3 1 2 0 0 1 0 0 0 1 1 2 0 0 0 2 0 0 1 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AGCGAGTGAGTTCCTCCAACA.......................................................................................................................... 21 0 1 29802.00 29802 535 609 259 576 330 400 866 273 237 153 461 77 30 945 719 546 794 659 886 320 361 805 394 183 175 164 242 145 222 765 840 299 554 207 59 212 297 152 191 30 152 29 258 140 405 243 49 635 346 20 168 352 189 213 55 298 105 195 193 130 123 155 290 191 90 104 212 215 78 191 208 281 203 128 42 112 36 16 210 148 123 127 65 40 104 67 203 109 84 197 102 98 494 107 396 98 116 48 35 106 42 102 127 100 42 39 47 65 193 76 53 74 59 35 45 44 4 111 50 32 91 29 29 25 26 60 75 45 86 43 60 38 25 25 55 35 0 18 27 20 21 27 42 11 48 183 21 30 1 32 105 69 23 17 18 24 81 4 6 36 26 31 23 13 41 44 11 13 12 0 41 62 10 22 22 10 13 18 0 45 19 43 11 9 4 13 17 11 17 17 12 4 13 7 1 18 6 15 13 1 16 13 17 5 6 6 13 11 2 18 14 6 9 4 5 3 12 0 5 2 1 6 6 2 4 1 4 0 2 4 2 0 1 3 3 0 1 1 2 3 0 0 5 2 4 0 2 2 0 0 5 0 1 0 2 0 0 0 2 1 0 2 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAGTGAGTTCCTCCAACACT........................................................................................................................ 20 0 1 29790.00 29790 1486 2829 1154 702 2629 358 293 1481 1682 1786 714 1731 1136 364 241 402 382 313 175 126 239 15 217 385 273 203 128 188 67 37 29 362 23 426 183 82 130 142 402 181 149 236 312 112 142 126 178 7 158 203 72 153 56 229 196 158 126 27 38 36 120 90 121 81 40 93 38 70 21 26 25 7 10 19 94 31 97 106 35 23 28 64 39 21 35 24 12 25 27 12 80 23 32 22 11 35 49 47 42 10 50 18 56 18 83 67 72 11 0 16 20 25 12 25 33 28 86 2 44 21 2 13 47 37 22 6 3 29 3 14 7 0 13 19 3 11 0 11 15 6 17 0 19 11 3 5 18 8 18 9 9 34 2 10 19 8 14 18 20 0 7 9 18 2 6 1 2 7 22 0 3 31 6 6 3 6 22 18 0 1 7 3 18 9 8 6 2 2 6 3 6 8 5 0 1 0 5 7 13 12 2 5 1 2 9 3 5 5 9 2 0 2 2 2 1 8 3 2 5 1 2 7 0 0 1 6 0 0 1 0 0 0 0 0 0 1 0 2 2 0 0 0 0 1 1 0 0 3 0 0 0 0 0 0 0 1 2 0 0 3 0 0 1 0 0 1 0 0 0 8 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGTGTGGGTCCAACTCACTCA............................................................................. 21 0 1 29593.00 29593 5 5 7 4610 30 0 20 8 8 14 1417 14 3 3231 3742 7 3060 16 1526 0 18 160 2010 0 4 1193 1 0 267 29 46 861 113 718 183 2 1 0 634 68 3 5 701 6 28 1125 153 25 153 4 1 15 7 374 1 1 1 1 2 143 3 4 7 6 5 0 0 3 53 2 0 16 27 0 83 1 5 3 1 0 1 2 1 22 11 4 2 2 1 1 1 0 184 1 2 4 3 0 1 0 1 0 4 3 113 0 1 3 1 0 1 1 1 85 0 0 0 6 1 10 3 7 0 16 1 0 1 0 0 0 0 3 0 0 5 24 709 0 0 2 3 6 21 3 0 3 0 1 8 6 5 3 0 0 0 10 0 108 0 0 2 0 2 18 0 205 9 0 30 0 184 2 2 0 2 0 6 0 1 158 1 149 0 0 83 2 0 0 2 0 5 73 0 0 8 0 3 0 1 2 6 0 0 29 14 0 1 0 13 5 0 0 1 4 1 4 0 11 2 1 27 0 1 0 0 1 0 2 0 0 22 0 0 2 0 30 21 0 0 1 1 0 0 2 0 2 0 2 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 3 0 1 0 0 0 0 3 0 1 0 0 0 1 0
...............................................................................CGAGTGAGTTCCTCCAACAC......................................................................................................................... 20 0 1 17266.00 17266 560 1817 893 416 1804 149 286 816 1103 947 259 1032 481 178 141 320 197 119 78 68 137 10 106 324 229 113 59 127 10 33 25 79 13 121 31 66 110 103 112 36 89 174 63 111 6 48 35 11 5 143 55 100 39 30 148 139 109 30 47 11 57 103 108 20 142 67 31 42 6 37 41 10 9 28 12 15 69 62 36 36 29 46 36 0 41 41 17 22 32 13 21 26 1 30 5 20 23 23 49 11 24 25 48 2 14 30 24 8 1 13 17 6 10 0 33 10 40 3 18 26 5 22 30 10 21 8 3 29 2 5 7 12 10 8 0 3 0 8 8 4 16 2 21 19 7 4 24 2 9 19 4 4 7 22 11 0 11 2 22 0 7 8 13 1 11 1 0 3 7 0 0 6 1 3 0 0 6 4 0 1 8 1 7 6 6 4 5 1 2 7 0 6 0 4 0 5 0 3 8 2 0 0 1 5 5 2 1 3 5 3 0 4 2 1 0 0 1 0 2 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 6 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAGTGTGGGTCCAACTCACTCA............................................................................. 22 0 1 15256.00 15256 10 12 24 1352 19 2 73 7 9 2 2837 31 9 481 378 9 460 40 422 0 33 275 244 2 6 362 3 0 1605 52 65 301 302 186 41 21 2 4 172 14 4 6 268 13 129 143 26 51 239 7 30 12 21 391 1 7 0 33 3 621 9 7 9 22 9 8 7 4 336 7 0 31 130 1 231 1 9 5 8 0 4 8 0 129 10 10 2 12 10 1 7 1 58 6 0 22 1 0 0 1 0 0 1 40 157 1 6 5 2 0 15 12 1 206 0 3 1 7 0 5 8 6 0 110 0 0 5 2 6 4 0 0 1 0 2 135 41 0 0 5 9 0 7 6 2 0 1 3 1 4 5 0 0 0 3 62 11 8 0 3 2 2 8 87 1 170 69 1 58 0 139 0 30 1 5 2 24 1 0 152 3 112 2 1 47 3 0 10 40 0 2 44 1 0 35 0 22 4 3 1 21 1 5 8 5 0 2 1 5 0 0 0 2 8 9 8 0 15 15 0 15 0 8 0 11 1 16 6 0 30 12 0 0 7 9 2 10 0 0 3 3 2 8 1 0 5 1 1 4 0 0 2 0 0 0 0 6 0 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0
.............................................................................TGCGAGTGAGTTCCTCCAACACT........................................................................................................................ 23 1 1 14996.00 14996 618 2468 294 863 740 447 300 612 582 605 70 199 180 119 166 143 122 173 98 296 135 49 120 193 179 276 160 181 19 41 63 69 48 85 57 80 137 81 0 68 190 65 0 42 0 29 44 27 0 52 58 108 32 12 44 75 127 33 68 14 57 55 53 54 25 39 45 26 7 41 42 35 30 27 23 63 19 23 62 75 64 21 109 7 16 9 23 39 53 17 74 57 0 40 157 24 21 35 71 28 38 36 40 10 14 31 22 14 1 33 27 11 13 4 34 36 17 6 22 9 8 5 15 5 47 36 7 28 3 11 30 13 15 18 2 3 0 58 13 11 8 6 2 2 10 41 33 9 3 4 16 15 12 16 18 0 9 3 6 4 9 10 9 2 4 0 0 5 4 1 0 15 0 4 12 8 3 6 0 1 6 0 5 3 1 4 7 1 1 5 1 0 4 6 0 1 3 2 5 10 6 0 1 2 1 1 3 1 0 1 4 1 3 1 0 3 3 0 0 0 0 0 0 2 1 2 0 0 0 0 0 1 2 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAGCGAGTGAGTTCCTCCAACAC......................................................................................................................... 23 0 1 7683.00 7683 253 218 135 246 80 268 367 92 83 71 180 13 11 178 197 114 189 73 163 111 63 106 91 44 69 81 159 41 88 85 97 54 114 73 21 61 74 21 64 30 29 6 50 45 3 84 21 70 4 12 34 34 59 45 11 86 28 53 75 67 34 58 78 30 67 46 42 14 50 56 60 35 50 58 25 37 11 3 61 20 30 8 29 33 4 17 34 63 30 17 12 25 6 35 13 26 23 16 23 39 6 21 15 15 7 16 11 12 40 25 19 20 25 36 24 11 1 17 16 10 29 23 6 17 18 11 24 15 12 13 19 5 3 11 14 12 0 0 15 6 2 22 26 8 15 8 13 13 5 7 9 19 8 3 4 14 4 4 14 20 10 3 4 15 11 2 8 2 7 0 4 2 5 6 11 10 4 0 1 2 5 0 3 3 3 9 7 5 6 0 2 3 6 3 2 7 3 2 1 0 5 4 3 4 1 2 0 1 1 4 3 1 3 1 5 2 2 2 3 1 0 0 3 2 6 0 1 0 1 0 0 0 0 0 2 1 0 0 2 1 0 0 0 0 0 3 3 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GCGAGTGAGTTCCTCCAACA.......................................................................................................................... 20 0 1 5202.00 5202 197 408 55 109 278 98 166 159 167 126 47 57 13 88 34 104 51 143 66 63 78 12 40 48 26 32 48 73 10 28 44 32 12 35 1 25 35 68 34 5 48 21 27 30 6 16 9 13 16 18 32 59 25 26 11 47 55 17 58 9 24 22 42 54 20 18 36 34 1 16 19 13 12 18 6 32 6 7 13 45 17 28 13 2 15 10 16 11 11 42 32 43 27 19 34 23 16 1 10 13 15 19 19 11 3 9 8 13 26 12 5 13 5 1 10 7 9 2 2 109 10 7 2 4 11 11 7 2 5 2 9 7 10 6 5 3 0 18 3 5 4 4 13 6 7 46 9 5 1 19 20 5 3 5 3 0 0 1 0 1 3 4 3 0 6 3 1 5 3 0 5 16 0 3 0 0 1 5 0 3 2 3 3 0 2 4 3 2 0 7 0 2 1 0 0 3 0 2 6 0 0 1 4 0 0 2 1 1 0 0 0 3 0 0 0 1 3 5 1 11 0 0 0 0 0 2 0 0 0 0 0 0 3 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTGAGTTCCTCCAACACT........................................................................................................................ 19 0 1 4737.00 4737 194 490 12 334 359 15 27 138 246 179 82 322 76 96 173 47 166 70 80 1 42 0 134 3 6 94 12 16 14 6 2 41 2 42 43 6 6 22 35 82 29 18 34 19 22 115 74 0 17 19 1 14 10 29 22 6 14 1 4 2 11 13 7 10 6 10 15 10 3 0 6 1 0 0 11 5 5 6 3 14 5 17 10 2 6 8 2 1 3 2 7 2 7 1 0 9 6 6 2 0 16 9 5 1 6 3 9 0 0 0 1 0 2 0 1 5 14 0 0 14 0 2 1 6 3 0 0 4 1 2 0 5 2 1 0 3 2 6 0 0 2 0 6 3 0 4 2 2 37 8 0 12 1 6 2 2 7 42 0 3 1 0 1 0 2 0 0 3 0 0 0 6 1 2 0 0 5 7 0 0 0 0 1 1 3 2 0 0 1 2 0 2 0 0 0 0 0 0 4 0 1 1 0 1 5 1 0 0 5 1 0 0 0 0 0 1 0 0 0 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 2 1 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................GTAGTGTGGGTCCAACTCACTCA............................................................................. 23 0 1 4556.00 4556 10 5 6 128 23 2 51 8 3 3 310 15 1 37 21 14 13 24 22 4 42 505 11 2 5 33 1 0 279 132 75 77 699 89 3 5 5 0 79 0 3 4 66 9 4 3 1 144 16 3 10 27 15 71 2 7 0 9 2 131 7 2 5 9 15 6 3 13 107 14 1 79 211 1 24 1 5 2 13 4 4 3 0 44 20 7 5 10 5 0 1 3 1 13 0 2 0 0 0 3 0 0 0 19 16 0 3 2 5 1 2 10 4 70 1 1 0 26 0 1 8 1 0 12 0 0 12 1 8 2 0 5 0 0 1 18 11 0 0 4 2 0 1 1 1 0 0 1 0 0 3 0 3 1 0 26 4 1 7 0 3 1 0 21 4 24 10 0 12 0 19 0 3 5 1 3 8 0 0 18 0 8 1 4 16 0 1 6 8 3 0 14 4 0 7 2 5 4 0 0 6 1 0 27 7 3 3 0 7 0 0 0 0 3 6 3 0 0 0 0 16 0 3 0 1 0 2 1 0 5 10 0 0 1 7 0 8 0 0 0 0 1 0 0 1 2 0 1 1 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 2 0 0 1 0 1 0 0 0 0 0 0 0 0
............................................................................TAGCGAGTGAGTTCCTCCAACACT........................................................................................................................ 24 0 1 4515.00 4515 153 134 83 172 34 180 217 46 41 27 93 8 7 63 89 64 85 57 74 103 50 76 43 45 50 67 77 24 65 67 70 33 66 24 20 49 68 9 22 16 25 2 31 24 41 32 19 33 50 7 17 20 40 42 8 31 15 30 12 32 16 21 41 21 21 20 18 16 24 29 25 22 30 30 5 9 5 5 30 10 18 12 19 12 2 11 29 36 29 19 23 11 19 17 20 12 13 12 15 19 5 5 5 13 4 9 4 10 7 12 7 15 14 18 11 14 3 10 12 5 16 13 2 9 10 8 10 6 10 7 10 0 7 10 7 4 0 0 7 10 3 9 14 2 2 1 5 8 4 9 3 2 8 9 7 3 15 11 0 9 7 3 5 4 5 3 8 2 2 1 3 1 3 6 5 6 1 1 2 1 1 1 2 1 1 0 2 7 3 0 0 1 4 2 1 3 0 2 0 0 4 2 2 2 1 3 1 0 1 1 1 1 3 0 0 2 2 0 1 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................AAGCGAGTGAGTTCCTCCAACACT........................................................................................................................ 24 1 1 3246.00 3246 83 131 61 194 32 83 98 51 23 32 12 15 6 67 94 34 85 37 80 71 43 15 50 22 29 77 104 12 55 15 15 31 17 32 26 24 45 14 0 22 19 4 0 56 0 41 20 13 0 4 5 24 21 23 13 25 20 14 14 16 18 39 33 12 24 19 14 8 15 33 35 5 7 21 9 10 6 3 36 13 11 4 32 12 7 7 17 11 17 8 13 6 0 6 6 6 17 13 7 14 5 9 7 5 7 12 2 3 4 17 6 8 12 9 7 11 3 3 6 0 10 7 4 3 7 5 7 5 4 5 10 4 5 12 5 3 0 0 6 5 2 6 2 0 2 2 2 6 2 2 4 0 7 1 4 3 5 3 0 7 3 2 3 2 0 0 2 4 5 1 1 1 5 1 5 12 4 1 0 2 2 0 1 2 2 3 0 3 0 2 0 0 1 1 0 3 0 5 1 1 0 0 2 1 0 0 1 0 0 1 0 0 2 1 0 1 2 0 1 0 0 2 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGCGAGTGAGTTCCTCCAACAC......................................................................................................................... 22 1 1 2975.00 2975 82 878 68 102 160 62 43 67 91 91 22 64 14 52 55 22 44 33 36 37 19 6 24 34 36 25 22 28 3 2 5 11 1 7 9 4 30 16 0 9 15 5 0 8 0 15 3 4 0 8 14 20 7 2 6 22 15 3 12 5 12 11 10 11 8 6 20 2 3 12 9 0 4 10 13 8 7 2 7 7 5 6 18 3 3 4 5 4 10 4 15 14 0 15 22 6 1 3 8 8 16 5 12 1 8 1 2 2 1 3 3 1 7 0 4 4 0 0 2 1 0 1 1 2 7 5 1 6 2 2 3 2 1 0 0 0 0 3 2 0 0 0 0 1 2 9 4 0 2 0 2 0 2 6 0 0 0 0 0 0 1 2 0 2 2 0 0 2 0 0 0 6 1 2 2 0 1 1 0 0 0 0 1 1 0 0 0 0 0 3 1 0 1 0 0 0 0 2 0 0 3 0 0 1 0 0 0 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CGAGTGAGTTCCTCCAACA.......................................................................................................................... 19 0 1 2913.00 2913 71 122 138 43 255 20 89 139 135 123 12 107 88 16 15 100 12 34 4 10 68 3 12 11 12 13 19 18 2 7 3 11 1 23 3 19 31 10 0 1 43 38 0 24 3 5 3 0 6 30 14 37 14 6 31 56 9 5 10 1 20 20 39 14 31 21 9 22 0 5 7 2 3 1 2 1 24 27 9 10 10 12 9 0 22 16 1 5 5 1 1 2 6 7 10 3 4 10 3 0 8 2 9 2 0 7 7 7 0 1 7 1 3 0 2 3 8 0 2 95 1 0 19 1 2 1 3 8 2 3 0 0 1 2 0 1 0 0 5 1 12 0 8 3 4 4 3 1 0 29 7 0 0 1 0 0 0 0 0 2 8 4 7 0 4 1 0 0 0 0 0 3 0 3 0 0 0 4 0 1 3 2 5 0 2 11 0 0 0 6 0 0 1 0 0 0 0 3 0 0 0 1 0 1 0 2 2 2 0 0 0 1 0 0 0 0 2 0 0 14 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AGTGTGGGTCCAACTCACTCAG............................................................................ 22 0 1 2788.00 2788 2 0 4 466 6 0 6 0 0 2 54 5 3 189 198 1 171 2 159 0 6 124 118 3 1 122 1 0 20 62 39 71 94 79 71 1 1 0 70 25 1 1 57 4 2 81 60 77 13 0 1 3 5 6 0 2 0 1 1 6 0 3 2 2 1 4 0 0 9 0 0 34 44 0 2 0 3 0 3 0 1 1 0 11 1 1 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 3 0 4 0 0 0 1 0 1 1 0 8 0 0 0 7 1 1 0 11 0 4 0 0 0 0 1 0 0 0 0 0 3 0 23 0 0 1 2 0 10 1 1 0 0 0 5 1 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 9 0 1 0 0 9 0 1 0 0 0 1 0 0 7 1 8 0 0 1 6 0 5 0 0 4 0 0 0 2 2 0 0 0 0 0 1 0 3 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CGCGAGTGAGTTCCTCCAACACT........................................................................................................................ 23 1 1 2002.00 2002 41 61 36 30 37 35 38 15 23 16 4 16 14 18 4 10 12 25 15 14 8 3 1 11 7 6 2 28 1 2 1 12 0 9 94 2 11 10 0 73 8 10 0 4 0 130 60 0 0 4 182 6 6 8 4 16 14 132 17 11 7 11 9 2 6 7 2 6 2 6 2 3 0 2 6 7 7 4 14 2 2 5 5 3 2 11 2 3 3 11 5 4 0 5 5 3 5 2 4 2 0 0 3 2 4 4 0 12 4 2 86 60 17 2 2 1 0 0 0 26 2 9 4 2 0 1 1 3 2 0 0 10 0 1 1 1 0 0 2 8 2 0 5 3 21 1 2 0 3 8 4 1 9 2 0 2 2 0 0 2 6 5 5 5 0 0 2 1 0 1 0 1 4 34 1 1 0 0 0 0 4 0 3 13 0 0 5 0 1 6 0 0 4 1 0 0 0 1 0 0 0 1 2 0 0 1 2 4 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GAGTGAGTTCCTCCAACAC......................................................................................................................... 19 0 1 1882.00 1882 60 415 7 31 235 13 21 72 132 94 12 93 56 35 38 13 32 15 8 2 11 0 17 3 4 10 8 10 0 0 1 14 1 24 5 2 5 12 19 10 5 8 13 4 25 7 5 0 13 4 0 7 4 10 5 10 12 2 5 2 2 11 4 5 5 4 1 0 0 3 1 1 1 0 1 0 5 2 5 2 1 2 4 2 1 1 0 2 1 3 3 1 7 2 0 5 5 1 5 1 12 2 3 0 1 2 4 1 1 0 1 1 0 0 1 4 6 0 2 2 0 0 4 0 2 0 0 1 0 0 0 0 1 2 0 1 0 0 1 0 2 0 1 4 0 1 0 1 3 0 0 0 0 3 3 0 6 0 0 0 1 0 3 0 1 0 0 1 0 0 0 3 0 0 0 0 2 2 0 0 0 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AAGCGAGTGAGTTCCTCCAACAC......................................................................................................................... 23 1 1 1710.00 1710 30 68 15 45 29 25 52 26 29 17 39 4 2 62 45 12 84 20 56 42 18 11 19 11 8 25 30 6 31 7 12 21 11 20 5 10 14 12 0 11 6 4 0 16 0 17 5 12 0 2 4 17 13 10 4 25 11 6 20 14 5 14 17 6 3 4 16 6 8 18 13 7 5 13 7 8 2 1 17 6 5 0 8 9 2 6 11 9 7 6 5 3 0 13 3 8 13 5 4 20 1 2 2 4 6 6 0 8 2 4 2 7 3 4 2 1 0 2 5 4 15 2 1 2 6 1 16 4 1 3 5 4 0 2 4 3 1 0 1 1 0 0 3 0 2 0 4 5 1 3 2 13 7 1 2 2 0 0 0 3 1 1 0 0 0 1 1 1 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 1 0 0 2 0 4 1 1 0 0 0 3 2 0 0 2 2 0 0 1 1 0 3 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TAGCGAGTGAGTTCCTCCAACA.......................................................................................................................... 22 0 1 1545.00 1545 26 17 17 33 17 18 81 14 9 8 23 2 1 27 14 24 23 21 41 23 19 21 8 21 13 2 20 9 51 10 10 9 24 8 0 21 27 10 0 2 6 0 0 10 8 5 1 11 10 1 11 17 20 10 3 21 2 13 10 28 5 7 17 14 8 14 11 4 11 10 19 5 14 14 4 4 0 0 22 3 9 6 6 25 5 2 20 17 7 3 6 7 30 10 6 5 0 4 5 3 2 3 4 6 3 2 1 10 18 6 3 6 4 6 2 5 1 4 1 1 8 1 2 6 1 3 9 0 5 5 1 5 1 5 3 7 0 0 4 4 1 3 1 4 2 2 1 2 0 0 2 0 3 1 0 4 0 0 0 0 4 0 0 3 7 6 1 2 1 0 6 2 0 3 0 7 1 0 0 3 2 2 2 0 0 2 0 1 0 3 0 0 1 0 2 2 0 1 1 0 3 0 0 0 0 1 0 0 0 0 2 1 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GCGAGTGCGTTCCTCCAACACT........................................................................................................................ 22 1 1 1460.00 1460 94 4 11 11 65 25 35 20 13 12 9 39 125 45 1 27 18 47 16 9 15 0 0 2 0 0 1 62 0 0 1 2 1 1 93 1 3 20 0 97 2 2 0 15 0 17 65 0 0 10 21 4 6 26 0 1 17 2 9 17 23 14 4 1 7 12 3 7 0 1 0 1 0 1 1 6 23 2 1 4 2 6 2 0 7 19 1 4 1 7 10 10 0 2 0 0 1 1 2 0 5 3 0 0 0 0 4 0 2 2 2 0 3 2 0 1 4 0 3 5 0 0 1 2 1 1 0 1 4 0 1 11 2 2 0 0 0 6 0 0 6 0 0 11 0 0 1 1 3 2 1 2 3 2 0 0 1 0 4 0 1 8 2 0 0 0 0 1 0 0 0 1 0 4 1 0 0 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 4 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dm3 chr2R:5508689-5508908 + dme-mir-307b ACAC-------AT-A-----------------------------------------CAA--TT--GTT-AATATTTTTATTACATGT----A--TTTCAC----TGG--------TGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGCCACTTCATTT---
droSim2 2r:6294356-6294571 + dsi_151 ACAC-------AT-A-----------------------------------------ATA--TT--GTT-AATATTTTTATTAT--------A--TTTCAC----TGG--------TGCCTGTTAGCTTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTTACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGCCACTTCATTT---
droSec2 scaffold_1:3125993-3126208 + dse_164 ACAC-------AT-A-----------------------------------------AAA--TT--GTT-AATATTTTTATTGT--------A--TTACAC----TGG--------TGCCAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGCCACTTCATTT---
droYak3 2L:18140582-18140798 + ATC-AC-----TC-A-----------------------------------------TAT--TT--TGT-GATATTTTTATTAT--------A--ACTCAC----TGG--------TGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---
droEre2 scaffold_4929:8848818-8849024 - der_247 GTACGTATCTCTT--CACTTTTTG------------TG-------------------------------------------AT--------A--TT-------------------TTGTAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------CTTCACT-----------T--------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---
droEug1 scf7180000409209:654008-654216 - ACTA-------AT-A-----------------------------------------CAATTTA--ATT-AATATTTTT-----------------------CTA---ATT-----TCCAAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTAATTT---
droBia1 scf7180000301506:1211728-1211930 - TCT-GTC----------------------------------------------------TT----TTT-AAT---------AT--------A--TT----TTTA---ACA-----TGTCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-GGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---
droTak1 scf7180000415866:192841-193038 - TTT--------------------------------------------------------------TTC-A-----------ATA---TTCT---------TCAA---ATG-----TTCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGATGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---
droEle1 scf7180000491107:1596254-1596458 - TTC---------------------------------------------------------------TT-GACCTTCTTGATAA--------G--TTTCAT-------ACG-----TGTCAGTTAGATTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT----------------------TTT----------------------GTCT------------GGACAA--GCAACTTTCGGCACTTCATTT---
droRho1 scf7180000777217:399394-399610 + TCTC-------TT-T-----------------------------------------GAT--TT--CTT-CTTATTTTTTCGATA-------A--TTTCGA----TGG--T-----TGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATGG------G--------TTTCACT----------------------TTT----------------------GTCT------------AGACAA--GTCACTTTCGGCACTTCATTT---
droFic1 scf7180000453858:1204317-1204508 - TTT----------------------------------------------------------------------------------------------CAC----TGACCG-----ACTTGGCTAGATCCGTGGGTACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCT-C--TAGCCCC-GGCACCG------A--------TTTCACT-----------TTT------T-TTT----------------------GTCT------------AGACGG--GCAGCTCTTGGCACTTCATTT---
droKik1 scf7180000302476:911380-911603 + TTTC-------CT-T-----------------------------------------CAA--TT--ATCACTTATTTTT---CC--------A--TTT--------GT--T-----GCACAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGGC--TAACTCT-G-TTCCG------G--------TTTCACT----------------------TTG----------------------GCCTAAAACTCCCCCCAGACAGCGGAGACTTTTGCCACTTCATTT---
droAna3 scaffold_13266:12795430-12795646 + dan_276 TTA-GTA----------------------------------------------------TTTG--CTT-AA----------AGA---TTA----------TTTA---ACA-----TTCTAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCTGC--TAACTTTCG-TTTCGGATTGGG--------GTTCACT-----------G--------T-TTT----------------------GTAA------------GGACAA--GCAACTTTTGGCACTTCATTTCGG
droBip1 scf7180000396730:1128063-1128292 - TA------------------------------------------------------CAA--TTTCGGT-TTTTTTCTTTTTAG--------A--TTT----TGA---ACAAGTAACTCGAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCGGC--TAACTTTCG-TTTCGGATTGGG--------GTCCACT-----------G--------T-TTT----------------------GTCC------------GGACAA--GCAACTTTTGGCACTTCATTTCGG
dp5 3:14135632-14135886 + dps-mir-307b AGAC-------ATA-CACTTTTCGAATTCACGCTT-GGATATTGAATCACTATTCT-------------------------------------------------TT--------TGTCC---GGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACTTT-T-TCTCA------GTTTTCAGTTTTCACTTGTTCTTT-----TTTTTGCTT-TTGTCCAGA---------------GTCT------------AGACAG--TCAACTTTTAGCACTTCATTT---
droPer2 scaffold_4:1182981-1183234 - dpe_343 ACAT-------A---CACTTTTCGAATATACACTTGGGATATTGAATCACTATTCT-------------------------------------------------GT--------TGTCCG---GCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACTTT-T-TCTCA------GTTTTCAGTTTTCACTTGTTCTTT-----TTTTTTCTT-TTGTCCAGA---------------GTCT------------AGACAG--TCAACTTTTAGCACTTCATTT---
droWil2 scf2_1100000004514:3433616-3433767 + ATT-TT-----AT--------------------------------------------------------------------ATATGT----ATGTA----ATAA---ATC-----TTTCATTGAACTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATTATAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGGCAAAA-TG-TGT--TAAGTT------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:5789437-5789600 + ------------------------------------------------------------------------------------------------------------------------GTTGGCTTAGTGGATACTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AACTAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTT-----------------CG------G--------TTTA-----------------------T-TTTG-----TCACTTTTGCACTTTTT--------------------C--GTAACT-TTAACACTTCATTT---
droMoj3 scaffold_6496:24271603-24271785 - -------------------------------------------------------------------------------------------------------------------------TTAGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCGAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TTCTT-----------------A------GTTTTC---------TTGTTGTTTTTA--TTTTTATTT-TTG-----GCACTTTTGCACTTTTT--------------------C--GTAACT-TTAACACTTCATTT---
droGri2 scaffold_15112:722930-723114 + C-------------------------------------------------------------------------------------------------------TGT--------CGCCTGTTT-TCTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTTT----AGTTCT-TTTA-----------------TTTTTATTTAATTTTT-----TCTCTTTTT-TT----------------------TTC----------------CTG--TTACTTTCTTGCACTT--TTT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dm3
ACAC-------AT-A-----------------------------------------CAA--TT--GTT-AATATTTTTATTACATGT----A--TTTCAC----TGG--------TGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGCCACTTCATTT---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTC...........................................................................................................................................................221893.008930000100000000000000000000001000000000000001000000000011000113000000000000000000000000000002084000170003800003001010000000000000000000000000000000000100100000000020000000010010000000000030124030000011033000000000000000011721000000004000000000021000001100600100001210203030120000000002813001030010060000041430000014673013800220141523331001272
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................................................................................................211663.0066300000000000000000000000000010000000000000000100000000000000000000000000000000000000000010002200211000000100000100000020000000000000000000000010000000000000000000070000000003000000000001042009000040130000000000000000013210000000000020000000000000010004000110010207000110000000200017040023320001300000302200001153353021100114192211230000255
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGG.....................................................................................................................................................................................................221593.00593000000000000000000000000000000000000000001000000000000000000000000000000000000000000000001031001010000500000100000000100000000000000000000000000000000000000000050000010000000000000000010330200002080000000000000004101000000000010000000000010000000016001000000301000200000010000013710003121020300000100002000146530041001316182024570213253
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTCC..........................................................................................................................................................231205.0020500000000000000000000000000000000000001000000000001000000000000000000000000000001001000000015000010002362000001101006000000000000000000000000001000000000000000000000000000000000000000000002020000000000000000000000000111000001000000000000000000000000200001000000000000000000000005800000100000201000001000000331100010004130001000079
........................................................................................................................................................CTCACTCAAGGAGGTTGTGATG......................................................................................................................................................................................................221153.0015300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000020000000000010000000000000040000201000000000000001000100000000000000000000000000000000100000000300004000010100000004610011000000300100000000000210530120101410001000054
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATG......................................................................................................................................................................................................211130.0013000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000205000000000000002002000000000000000000000000010000000100000000200200000000000000003900011010000100000000000000510000000014640000011141
..................................................................................................................................................................................................ATCACACCCAGGTTGAGTGAGT............................................................................................................................................................22166.006600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000011010000101000000000000000000000000000000000000000001000000000000000000210001010000000000001900000000000000000010000001200010100000010000000126
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAG.............................................................................................................................................................20156.005600000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000002000000000000001000000000000000000000000001000000100000000000000000000000000000001300000210000000000000000000100000000001230010000022
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTT...........................................................................................................................................................22152.005200000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000002022010000005000000000000000000000000000000000000000000000000000000000000000000000000000000001600000000000000000000000000000000000000310001000116
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTCA..........................................................................................................................................................23125.0025000000000000000000000000000000000000000000000000000000000338000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000001000000000000000000000000000000100000000007
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGGT....................................................................................................................................................................................................23121.00210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000100000000001000100000013
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTCT..........................................................................................................................................................23115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000030000000000200000000000000000000000000001000000007
..................................................................................................................................................................................................ATCACACCCAGGTTGAGTGAG.............................................................................................................................................................21115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000030000000000000000000100000000000000000102010000006
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGA..............................................................................................................................................................19112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000050000000000010000000000000000000000000010000000003
........................................................................................................................................................CTCACTCAAGGAGGTTGTGAT.......................................................................................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTA...........................................................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000030000000000000000000000000000000000000001000000001
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTCAA.........................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................ATCACACCCAGGTTGAGTGA..............................................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000002
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGC............................................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACACCCAGGTTGAGTGAGTC...........................................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000010000000000000000000
........................................................................................................................................................CTCACTCAAGGAGGTTGTGA........................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000020000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGGA....................................................................................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000000000001000000000000000000
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGA............................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACACCCAGGTTGAGTGAGT............................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGC.....................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................ACCCAGGTTGAGTGAGTC...........................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................CACACCCAGGTTGAGTGAGTT...........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................ATCACACCCAGGTTGAGTGAGTT...........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.....................................................................................................................................................................................................ACACCCAGGTTGAGTGAGTCT..........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGGATC..................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTAC..........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................ATCACACCCAGGTTGAGTGAGTC...........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................ACACCCAGGTTGAGTGAGTCC..........................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGGAA...................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................................................................................................................................................................................................CACACCCAGGTTGAGTGAGTCC..........................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................CTCACTCAAGGAGGTTGTGATGA.....................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................ACTCAAGGAGGTTGTGATGG.....................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
...................................................................................................................................................................................................TCACACCCAGGTTGAGTG...............................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droSim2
ACAC-------AT-A-----------------------------------------ATA--TT--GTT-AATATTTTTATTAT--------A--TTTCAC----TGG--------TGCCTGTTAGCTTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTTACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGCCACTTCATTT---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTC...........................................................................................................................................................2219.00931300000002000000
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................................................................................................2112.00220000000000000000
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTCT..........................................................................................................................................................2311.00100010000000000000
...................................................................................................................................................................AGGTTGTGATGGATC..................................................................................................................................................................................................1540.25100000000010000000
droSec2
ACAC-------AT-A-----------------------------------------AAA--TT--GTT-AATATTTTTATTGT--------A--TTACAC----TGG--------TGCCAGTTAGCTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGCCACTTCATTT---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................................................................................................2116.0061104
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGG.....................................................................................................................................................................................................2213.0031200
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTC...........................................................................................................................................................2212.0020101
...........................................................................................................................................................ACTCAAGGAGGTTGTGATGGT....................................................................................................................................................................................................2111.0010100
droYak3
ATC-AC-----TC-A-----------------------------------------TAT--TT--TGT-GATATTTTTATTAT--------A--ACTCAC----TGG--------TGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGC............................................................................................................................................................2111.0010010000000
droEre2
GTACGTATCTCTT--CACTTTTTG------------TG-------------------------------------------AT--------A--TT-------------------TTGTAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------CTTCACT-----------T--------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTCT..........................................................................................................................................................2311.001100000
........................................................................................................................................................CTCACTCAAGGAGGTTGTGATG......................................................................................................................................................................................................2211.001000001
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGG.....................................................................................................................................................................................................2211.001000001
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................................................................................................2111.001000001
droEug1
ACTA-------AT-A-----------------------------------------CAATTTA--ATT-AATATTTTT-----------------------CTA---ATT-----TCCAAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTAATTT---SizeHit CountTotal NormTotal
No Reads
droBia1
TCT-GTC----------------------------------------------------TT----TTT-AAT---------AT--------A--TT----TTTA---ACA-----TGTCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-GGCTGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---SizeHit CountTotal NormTotal
No Reads
droTak1
TTT--------------------------------------------------------------TTC-A-----------ATA---TTCT---------TCAA---ATG-----TTCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGATGC--TAACTTT-G-CATCG------G--------TTTCACT--------------------T-TTT----------------------GTCT------------AGACAA--GCAACTTTTGGCACTTCATTT---SizeHit CountTotal NormTotal
No Reads
droEle1
TTC---------------------------------------------------------------TT-GACCTTCTTGATAA--------G--TTTCAT-------ACG-----TGTCAGTTAGATTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATCG------G--------TTTCACT----------------------TTT----------------------GTCT------------GGACAA--GCAACTTTCGGCACTTCATTT---SizeHit CountTotal NormTotal
No Reads
droRho1
TCTC-------TT-T-----------------------------------------GAT--TT--CTT-CTTATTTTTTCGATA-------A--TTTCGA----TGG--T-----TGCCAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCTGC--TAACTTT-G-CATGG------G--------TTTCACT----------------------TTT----------------------GTCT------------AGACAA--GTCACTTTCGGCACTTCATTT---SizeHit CountTotal NormTotal
No Reads
droFic1
TTT----------------------------------------------------------------------------------------------CAC----TGACCG-----ACTTGGCTAGATCCGTGGGTACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCT-C--TAGCCCC-GGCACCG------A--------TTTCACT-----------TTT------T-TTT----------------------GTCT------------AGACGG--GCAGCTCTTGGCACTTCATTT---SizeHit CountTotal NormTotal
No Reads
droKik1
TTTC-------CT-T-----------------------------------------CAA--TT--ATCACTTATTTTT---CC--------A--TTT--------GT--T-----GCACAGTTAGTTTCGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGGC--TAACTCT-G-TTCCG------G--------TTTCACT----------------------TTG----------------------GCCTAAAACTCCCCCCAGACAGCGGAGACTTTTGCCACTTCATTT---SizeHit CountTotal NormTotal
No Reads
droAna3
TTA-GTA----------------------------------------------------TTTG--CTT-AA----------AGA---TTA----------TTTA---ACA-----TTCTAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCTGC--TAACTTTCG-TTTCGGATTGGG--------GTTCACT-----------G--------T-TTT----------------------GTAA------------GGACAA--GCAACTTTTGGCACTTCATTTCGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................GCTCACTCAAGGAGGTTGTGA........................................................................................................................................................................................................21120.00202001215
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTC...........................................................................................................................................................22119.0019200089
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................................................................................................21116.00161000411
.......................................................................................................................................................GCTCACTCAAGGAGGTTGTGATG......................................................................................................................................................................................................23112.00120000012
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTCA..........................................................................................................................................................2317.007200221
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAG.............................................................................................................................................................2016.006000042
.......................................................................................................................................................GCTCACTCAAGGAGGTTGTG.........................................................................................................................................................................................................2016.006100005
........................................................................................................................................................CTCACTCAAGGAGGTTGTGATG......................................................................................................................................................................................................2215.005000005
.......................................................................................................................................................GCTCACTCAAGGAGGTTGTGAT.......................................................................................................................................................................................................2214.004000022
.....................................................................................................................................................................................................ACACCCAGGTTGAGTGAGTCA..........................................................................................................................................................2113.003000003
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGG.....................................................................................................................................................................................................2212.002000020
....................................................................................................................................................................................................CACACCCAGGTTGAGTGAGTCT..........................................................................................................................................................2212.002000020
....................................................................................................................................................................................................CACACCCAGGTTGAGTGAGTCA..........................................................................................................................................................2212.002100100
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATGGT....................................................................................................................................................................................................2311.001000001
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATG......................................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................CACACCCAGGTTGAGTGAGTA...........................................................................................................................................................2111.001000001
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTGT..........................................................................................................................................................2311.001100000
.......................................................................................................................................................GCTCACTCAAGGAGGTTGTGATGC.....................................................................................................................................................................................................2411.001000001
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGA............................................................................................................................................................2111.001000001
.....................................................................................................................................................................................................ACACCCAGGTTGAGTGAGT............................................................................................................................................................1911.001000001
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGC............................................................................................................................................................2111.001000010
........................................................................................................................................................CTCACTCAAGGAGGTTGTGATGG.....................................................................................................................................................................................................2311.001000001
droBip1
TA------------------------------------------------------CAA--TTTCGGT-TTTTTTCTTTTTAG--------A--TTT----TGA---ACAAGTAACTCGAGTTAGTCTTGTGGATACTCTGTCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAAAGGCGGC--TAACTTTCG-TTTCGGATTGGG--------GTCCACT-----------G--------T-TTT----------------------GTCC------------GGACAA--GCAACTTTTGGCACTTCATTTCGGSizeHit CountTotal NormTotal
No Reads
dp5
AGAC-------ATA-CACTTTTCGAATTCACGCTT-GGATATTGAATCACTATTCT-------------------------------------------------TT--------TGTCC---GGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACTTT-T-TCTCA------GTTTTCAGTTTTCACTTGTTCTTT-----TTTTTGCTT-TTGTCCAGA---------------GTCT------------AGACAG--TCAACTTTTAGCACTTCATTT---SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGTC...........................................................................................................................................................2211.0010000010000
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................................................................................................2111.0010100000000
droPer2
ACAT-------A---CACTTTTCGAATATACACTTGGGATATTGAATCACTATTCT-------------------------------------------------GT--------TGTCCG---GCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGCGACCCGAACTTT-T-TCTCA------GTTTTCAGTTTTCACTTGTTCTTT-----TTTTTTCTT-TTGTCCAGA---------------GTCT------------AGACAG--TCAACTTTTAGCACTTCATTT---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................ATCACACCCAGGTTGAGTGAG.............................................................................................................................................................2111.001000010
.........................................................................................................................................................TCACTCAAGGAGGTTGTGATG......................................................................................................................................................................................................2111.001000010
droWil2
ATT-TT-----AT--------------------------------------------------------------------ATATGT----ATGTA----ATAA---ATC-----TTTCATTGAACTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCATATTATAAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGGCAAAA-TG-TGT--TAAGTT------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
------------------------------------------------------------------------------------------------------------------------GTTGGCTTAGTGGATACTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AACTAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTT-----------------CG------G--------TTTA-----------------------T-TTTG-----TCACTTTTGCACTTTTT--------------------C--GTAACT-TTAACACTTCATTT---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
...................................................................................................................................................................................................TCACACCCAGGTTGAGTGAGT............................................................................................................................................................2111.00110000000000000000000000000000000000000000000000000000000000000
droMoj3
-------------------------------------------------------------------------------------------------------------------------TTAGCTTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCGAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TTCTT-----------------A------GTTTTC---------TTGTTGTTTTTA--TTTTTATTT-TTG-----GCACTTTTGCACTTTTT--------------------C--GTAACT-TTAACACTTCATTT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
C-------------------------------------------------------------------------------------------------------TGT--------CGCCTGTTT-TCTTGTGGATATTCTATCCTGCTATCGCTCACTCAAGGAGGTTGTGATGGATACCAAATCG-AAATAACATCACACCCAGGTTGAGTGAGTCAAAGCAAGACAAAA-TGTTT----AGTTCT-TTTA-----------------TTTTTATTTAATTTTT-----TCTCTTTTT-TT----------------------TTC----------------CTG--TTACTTTCTTGCACTT--TTT---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 01/23/2015 at 08:57 PM