ID:

dme-mir-13a-as

 Coordinate:

chr3R:11243264-11243338 +

 Confidence:

Known Ortholog

 Type:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.0 -10.8 -10.7

Sense Strand Reads

TTCAGTCAGTCGGTTATGAAATATGTTTTTTGATCCGCTGCCGCGATTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGATAATAGTCGACATTTCACAACCCTTTGAGGAGTTACGTAAGAATTATGGCTTGGATCACAAACACTTGTTGGTTTAGCATCCAATCGTT
**************************************************************((((..((.(((((.(((....(((....)))..))).))))).)).)))).....................***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM609222
ML-DmBG1-C1		 V129
ML-DmBG1-c1		 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2
 V148
mbn2 		V145
S2-DRSC		 V073
mbn2 		SRR032094
ago2 knockdown
 SRR097865
Drosophila S2-NP cells
 V091
fGS/OSS total  		 SRR029028
untreated (mock)
 SRR097866
Drosophila S2-NP cells
 SRR032092
mock oxidized
 V147
1182-4H cell		 V146
S1 cell		 SRR029031
loqs-ORF knockdown
 GSM343833
S2R+ cell		 GSM343832
S2R+ cell		 SRR032093
ago1 knockdown
 V125
ML-DmD9		 V133
Sg4 		V074
S3		 GSM371638
S2-NP		 SRR029030
dcr-2 knockdown
 SRR032096
AGO2 IP dcr2 knockdown
AGO2
 SRR097867
Drosophila S2-NP cells
 V128
S3 		V127
G2		 V132
ML-DmD32 		SRR029029
dcr-1 knockdown
 V134
ML-DmD8 		GSM424740
S2 pKF63 stably transfected
 V086
female body, aged
 SRR029032
r2d2 knockdown
 GSM609217
MLDmD20c5		 SRR317113
genotype: CG47711-delta1/CG4771-delta1stage: from 5-6 days old flies
 GSM322543
male head #1
 GSM609242
s2+48 #2
 V137
Male aged head
 GSM399110
KC-48 #2
 GSM609218
Sg4		 V008
S2-DRSC		 V131
ML-DmD16-c3 		SRR031692
Total small RNAs from Oregon R
 GSM609225
ML-DmBG3-C2		 GSM280087
S2cell (AGO2IP)
AGO2
 GSM609244
KC+48 #2
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 V126
CME L1 		V0632
wt ovary AGO1-IP, reseq
AGO1
 V130
ML-DmBG3-c2 		SRR032095
AGO1 IP dcr2 knockdown
AGO1
 SRR031699
Total small RNAs from dcr-2 homozygous flies
 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 V078
Desiccation, female head
 SRR317110
genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies
 GSM272653
KC -48 #1
 SRR001664
homozygous_dcr-2_untreated
 SRR014275
Ovary_rep1_LK_P
 GSM609250
ML-DmD32 cell		 GSM609230
CS,ovary,AGO1IP
AGO1
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1
 GSM609229
embryo 2-6hr
 GSM609232
r2d2[1] ovary total RNA  
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 GSM180328
adult heads (female heads, male heads)
 SRR001349
heterozygous_dcr-2_untreated
 V034
ML-DmD16c3 cell		 V085
CME W2 wing disc		 GSM628272
ago2[414] ovary total RNA
 GSM609234
CS  male total RNA  
 SRR029633
total small RNAs from hen1 homozygous flies
 V136
Male aged body
 GSM609248
ML-DmD9 cell		 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1
 GSE24545
CS ovary total RNA
 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1
 GSM180333
late embryo (12-24)
 GSM467731
Dmel_loq_sRNAseq
 GSM399107
male body #2
 GSM360262
0-2d pupae
 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR060652
hs-Penelope_testes_total
 SRR065800
zuc_H-Y_ovaries
 SRR065801
zuc_het(H-Y)_ovaries
 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 SRR317116
genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies
 SRR341118
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 GSM609239
IR- 2-18hr
 V022
ML-DmD32 cell		 GSM399101
kc167 cell		 GSM609227
CMEW1 Cl.8+ cell		 V036
ML-DmD20c5 cell		 V0642
ago2 ovary, AGO1-IP, reseq
AGO1
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1
 V080
Starvation, female head
 GSM609238
embryo 14-24hr
 GSM628271
r2d2[1] ovary total RNA  
 GSM609237
ago2[414] ovary total RNA
 V092
dcr-2[G31R] male total RNA  
 V139
Cold_female_body
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 GSM280088
S2cell (AGO1IP)
AGO1
 V144
OSC		 SRR029033
lacZ knockdown
 V003
dsDcr-1 (katsutomo RNA)
 V079
Oxidation, female head
 SRR031703
Total small RNAs from r2d2 homozygous flies
 GSM609231
ago2[414], ovary, AGO1IP
AGO1
 GSM180329
adult bodies (female bodies, male bodies)
 GSM360260
0-1d Pupae (w)
 GSM609243
KC+48 #1
 SRR010953
Aub heterozygotes, oxidized
 SRR010954
Aub trans-heterozygotes, oxidized
 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 V006
r2d2 female: possibly heterozygous
 V141
Heat_female_body
 GSM361908
s2-48 Biological Replicate #2
 SRR014274
Ovary_rep1_LK(fem)_x_Har(male)_F1
 SRR014279
Ovary_rep1_w1118(fem)_x_wK(male)_F1
 V140
Dessication_female_body
 V096
loqsKO/f00791 ovary
 GSM286605
2-6h #1 (8)
 GSM364902
12-24hr embryo
 GSM286604
0-1h #3 (7)
 GSM609235
CMEL1		 GSM385821
OSS_s7
...............................................................................................................................................ACACAGTCTTGTTGGTTTAG............ 20 3 4 560.00 2240 542 840 1 322 0 131 52 33 18 12 20 12 0 0 22 44 40 18 0 0 3 23 7 26 12 1 0 0 23 0 0 0 9 0 0 0 0 0 0 0 0 1 0 1 10 0 0 0 0 0 8 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTATGGCTTGGAGCTCAAAG.......................... 20 3 2 125.50 251 26 91 117 0 0 0 0 2 3 0 3 0 0 0 0 0 0 0 0 5 0 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TATCACAGCCCTTTGAGGAG......................................................... 20 2 1 124.00 124 0 0 0 10 6 0 11 1 0 8 1 0 9 7 6 0 0 0 7 3 0 0 3 0 2 1 3 4 0 3 2 0 0 0 2 4 4 3 1 0 0 1 0 0 0 3 0 1 0 2 0 2 0 1 2 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 0 1 1 0 1 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTTATGGCTTGGAGCTCAAA........................... 20 3 5 97.60 488 75 153 210 0 0 0 0 10 3 0 15 0 0 0 0 0 0 0 0 9 0 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................GGAGCACAAACACTAGTGGGT................ 21 3 4 97.50 390 0 0 0 0 156 0 6 24 14 8 22 46 0 0 1 0 0 10 0 1 39 1 0 5 7 25 0 0 0 0 0 0 11 0 0 0 0 0 0 2 7 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACAGTCTTGTTGGTTTAGC........... 21 3 2 48.00 96 26 49 0 12 0 1 0 1 2 0 0 0 0 0 0 1 3 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TATCACAGCCCTTTGAGGAGC........................................................ 21 3 2 31.00 62 0 1 0 2 3 0 13 0 0 4 0 0 6 2 1 0 0 0 2 3 0 0 6 0 0 1 3 0 0 2 0 0 0 0 1 0 0 1 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACAGTCTTGTTGGTTTAGCA.......... 22 3 1 24.00 24 11 5 0 3 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCACAGCCCTTTGATGAGCTA...................................................... 21 3 3 21.00 63 0 0 0 1 4 0 0 0 0 6 0 0 2 1 0 0 1 0 3 1 1 0 3 0 0 1 5 2 0 2 11 0 0 0 0 0 0 1 2 0 0 3 0 0 0 0 0 5 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 0 0 0 0 0
...............................................................................................................................................ACACAGACTTGTTGGTTTAG............ 20 2 1 16.00 16 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GTTATGGCTTGGAGCTCAAAC.......................... 21 3 2 14.00 28 11 5 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAAAGTCTTGTTGGTTTAG............ 20 2 1 12.00 12 11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAAAGTCTTGTTGGTTTAGAA.......... 22 3 3 12.00 36 31 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TATCACAGCCCTTTGACGAGT........................................................ 21 3 1 10.00 10 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACAGACTTGTTGGTTTAGAA.......... 22 3 2 10.00 20 19 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TACACAGACTTGTTGGTTTAG............ 21 3 4 9.00 36 31 0 0 0 0 2 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TATCACAGCCCTTTGACGAGTT....................................................... 22 3 1 9.00 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GCACACAGACTTGTTGGTTTA............. 21 3 2 8.00 16 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACACTCTTGTTGGTTTAG............ 20 2 1 7.00 7 1 0 0 3 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACAGTCTTGTTGGTTTA............. 19 3 20 6.60 132 40 20 0 29 0 12 0 4 2 5 0 0 0 0 2 0 1 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CACACAGTCTTGTTGGTTTAG............ 21 3 2 6.50 13 7 2 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TACAAAGTCTTGTTGGTTTAG............ 21 3 6 6.17 37 36 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TATCACAGCCCTTTGAGGA.......................................................... 19 2 1 6.00 6 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTATGGCTTGGAGCTCAAA........................... 19 2 1 6.00 6 1 0 1 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACACTCTTGTTGGTTTAGAA.......... 22 3 1 6.00 6 5 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATTTCACAACCCTTTGAGGAGT........................................................ 22 0 1 6.00 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGAGCACAAACACTAGTGGGTT............... 22 3 2 5.00 10 0 0 0 0 5 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTTCACAACCCTTTGAGGAGT........................................................ 21 0 1 5.00 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................AGCACACAGACTTGTTGGTTT.............. 21 3 2 5.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACAGACTTGTTGGTTTAGA........... 21 3 2 4.50 9 8 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CACAGTCTTGTTGGTTTAG............ 19 3 20 4.25 85 18 0 0 20 0 0 0 2 1 0 2 0 0 0 0 1 0 14 0 0 0 0 0 14 4 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACACTCTTGTTGGTTTAGA........... 21 3 4 4.25 17 3 2 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACACAGCCTTGTTGGTTTAG............ 20 3 5 4.20 21 17 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TATCACAGCCATTTGAGGAGTT....................................................... 22 3 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................ATCCGCACGCAAGTCATCAA.............................................................................................................. 20 3 12 3.00 36 0 0 0 0 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAAAGCCTTGTTGGTTTAGAA.......... 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................TGTTATGGCTTGGATCTCAAA........................... 21 3 1 3.00 3 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.................................................................................GTGCATTATAGTCGACATTTC......................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TATCACACACGCTTGTTGGTT............... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTATGGCTTGGAGCTCAAACC......................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AACTTGTTGGTTTCGTATCCA...... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TTTATGGCTTGGAGCTCAAAC.......................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................AACCCCTTGAGTAGCTACGT................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TACACAGACTTGTTGGTTTAGC........... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AACTCTTGTTGGTTTAGCTTGC....... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GAGTAGATTATAGACGATATT........................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TACATAGACTTGTTGGTTTAG............ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................TTACACACCCTTGTTGGTTTA............. 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GAGTACAAACACTTGTTGGGT............... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AGTTATGGCTTGGGTCTCAAA........................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................ACAAATACTTGTTGATTTAG............ 20 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TCAGACCGCTTTGAGGAGTT....................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................GATTGGACCACATACACTTGT.................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAGTCAGTCAGCCAATACTTTATACAAAAAACTAGGCGACGGCGCTAAGCGTGCTTTGAGTAGTTTTACCGACACTATACTCATCTATTATCAGCTGTAAAGTGTTGGGAAACTCCTCAATGCATTCTTAATACCGAACCTAGTGTTTGTGAACAACCAAATCGTAGGTTAGCAA
*****************************************((((..((.(((((.(((....(((....)))..))).))))).)).)))).....................************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM609238
embryo 14-24hr
 V080
Starvation, female head
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 V078
Desiccation, female head
 V079
Oxidation, female head
 GSM322543
male head #1
 SRR031699
Total small RNAs from dcr-2 homozygous flies
 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1		 GSM313163
dcr-2 heterozygous, untreated
 GSM609251
aged female head
 SRR029633
total small RNAs from hen1 homozygous flies
 V077
cold, female head
 GSM609229
embryo 2-6hr
 GSM313162
dcr-2 homozygous, untreated
 SRR031703
Total small RNAs from r2d2 homozygous flies
 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR001349
heterozygous_dcr-2_untreated
 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1		 GSM609230
CS,ovary,AGO1IP
AGO1		 GSM609233
r2d2[1], ovary, AGO1IP
AGO1		 SRR031692
Total small RNAs from Oregon R
 V137
Male aged head
 V0632
wt ovary AGO1-IP, reseq
AGO1		 SRR031701
Total small RNAs from r2d2 heterozygous flies
 V012
Dcr2 male (Katsutomo, whole fly?)
 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1		 GSM609240
IR+ 2-18hr
 GSM609239
IR- 2-18hr
 SRR001347
ago2_untreated
 V023
Dcr2 female head
 SRR001345
ago2_non-beta-eliminated
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1		 GSM609247
heat female head
 SRR001664
homozygous_dcr-2_untreated
 V0642
ago2 ovary, AGO1-IP, reseq
AGO1		 GSM609231
ago2[414], ovary, AGO1IP
AGO1		 GSM286607
6-10h #1 (10)
 SRR031696
Ago1-associated small RNAs from Oregon R
AGO1		 GSM286611
6-10h #2 (11)
 V147
1182-4H cell		 SRR001339
WT_females_non-beta-eliminated
 V132
ML-DmD32 		V125
ML-DmD9		 SRR001341
WT_males_non-beta-eliminated
 GSM609232
r2d2[1] ovary total RNA  
 GSM322533
female head #1
 GSM609223
male, one day
 V092
dcr-2[G31R] male total RNA  
 GSM609225
ML-DmBG3-C2		 V146
S1 cell		 V074
S3		 SRR001338
IR_non-beta-eliminated
 V127
G2		 GSM240749
female head
 GSM609234
CS  male total RNA  
 GSM360262
0-2d pupae
 V134
ML-DmD8 		GSM628271
r2d2[1] ovary total RNA  
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 V015
DreRFHV148h
 SRR001343
dcr-2_non-beta-eliminated
 SRR014270
Embryo_0-2hrs_rep1_NA_0_2hr_Emb
 GSM371638
S2-NP		 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1		 SRR317117
genotype: zuc_hm27/zuc_cd761stage: from 5-6 days old flies
 GSM286601
male head
 GSM286605
2-6h #1 (8)
 V144
OSC		 V032
S1 cell		 SRR014271
Embryo_0-2hrs_rep1_w1118_0_2hr_Emb
 SRR014268
Embryo_0-2hrs_rep1_HAR_0_2hr_Emb
 V091
fGS/OSS total  		 GSM360260
0-1d Pupae (w)
 S6
0-1,2-6,6-10h embryo
 SRR001344
dcr-2_beta-eliminated
 GSM609224
female, one day
 V006
r2d2 female: possibly heterozygous
 V131
ML-DmD16-c3 		V128
S3 		SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 GSM609237
ago2[414] ovary total RNA
 GSM399110
KC-48 #2
 V133
Sg4 		GSM609250
ML-DmD32 cell		 SRR032095
AGO1 IP dcr2 knockdown
AGO1		 GSM364902
12-24hr embryo
 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 V140
Dessication_female_body
 GSM399105
disk #2
 V145
S2-DRSC		 V148
mbn2 		V130
ML-DmBG3-c2 		GSM275691
imaginal disc
 GSM609219
GM2 cell		 V073
mbn2 		SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 V034
ML-DmD16c3 cell		 SRR001348
ago2_oxidized
 SRR014269
Embryo_0-2hrs_rep1_LK_0_2hr_Emb
 V126
CME L1 		SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 GSM628272
ago2[414] ovary total RNA
 GSM609249
ML-DmD21 cell		 GSM609222
ML-DmBG1-C1		 GSM313161
dcr-2 heterozygous, oxidized
 GSM399107
male body #2
 GSM399100
Kc167 cell		 V008
S2-DRSC		 GSE24544
dcr-2[L811fsX] ovary total RNA
 SRR029028
untreated (mock)
 GSM609242
s2+48 #2
 GSM313160
dcr-2 homozygous, oxidized
 V096
loqsKO/f00791 ovary
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR341118
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 V141
Heat_female_body
 GSM609248
ML-DmD9 cell		 GSM322219
2-4day pupae #1
 GSM379063
Vasa Heterozygote
 SRR029030
dcr-2 knockdown
 GSM286604
0-1h #3 (7)
 GSM360257
1st instar #2
 SRR097865
Drosophila S2-NP cells
 V138
Male cold body
 GSM379057
Krimp Mutant
 GSM609235
CMEL1		 SRR317113
genotype: CG47711-delta1/CG4771-delta1stage: from 5-6 days old flies
 GSM399101
kc167 cell		 V086
female body, aged
 GSM424740
S2 pKF63 stably transfected
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 GSM180328
adult heads (female heads, male heads)
 V036
ML-DmD20c5 cell		 GSM379065
Zuc Heterozygote
 GSE24545
CS ovary total RNA
 V142
Oxidation_female_body
 SRR029031
loqs-ORF knockdown
 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 V014
DTT 8h
 GSM609227
CMEW1 Cl.8+ cell		 V139
Cold_female_body
 SRR341115
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 SRR298537
strain: vret148-60/vret148-60genotype/variation: Vret Mutant
 GSM609218
Sg4		 GSM360256
1st instar #1
 SRR029033
lacZ knockdown
 GSM379064
Vasa Mutant
 GSM280088
S2cell (AGO1IP)
AGO1		 GSM286606
2-6h #2 (9)
 SRR097866
Drosophila S2-NP cells
 GSM609221
1182-4H cell		 V085
CME W2 wing disc		 SRR029032
r2d2 knockdown
 GSM609241
s2+48 #1
 V129
ML-DmBG1-c1		 V030
ML-DmD8 cell		 V136
Male aged body
 GSM379062
Squ Mutant
 SRR065801
zuc_het(H-Y)_ovaries
 SRR032094
ago2 knockdown
 SRR014275
Ovary_rep1_LK_P
 GSM609220
ML-DmD21 cell		 SRR014274
Ovary_rep1_LK(fem)_x_Har(male)_F1
 GSM379066
Zuc Mutant
 GSM239041
fly heads, non beta-eliminated
 GSM379052
Aub Heterozygote
 SRR065800
zuc_H-Y_ovaries
 V022
ML-DmD32 cell		 GSM180333
late embryo (12-24)
 SRR029029
dcr-1 knockdown
 GSM343832
S2R+ cell		 SRR060646
yw67c23(2)_ovaries_total
 GSM180332
mid embryo (6-10)
 GSM379056
Krimp Heterozygote
 SRR014278
Ovary_rep1_w1118(fem)_x_Har(male)_F1
 V037
Felix sample +mirtrons
 V031
GM2 cell		 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 SRR031693
2'-O-methylated small RNAs from Oregon R
 SRR014276
Ovary_rep1_NA(fem)_x_Har(male)_F1
 SRR014272
Embryo_0-2hrs_rep1_wK_0_2hr_Emb
 SRR060644
A2_ovaries_total
 GSM343287
Drosophila Toll 10b mutant embryos
 SRR032093
ago1 knockdown
 SRR014281
Ovary_rep1_wK(fem)_x_w1118(male)_F1
 GSM379050
Armi Heterozygote
 SRR317110
genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies
 GSM343833
S2R+ cell		 SRR001337
WT_females_beta-eliminated
 GSM609244
KC+48 #2
 GSM609226
CMEW1 Cl.8+ cell		 SRR097867
Drosophila S2-NP cells
 GSM379051
Armi Mutant
 GSM385748
OSS_s6		 SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 SRR060653
hs-Penelope_ ovaries_total
 GSM385744
OSS_s2		 GSM609217
MLDmD20c5		 SRR014280
Ovary_rep1_w1118_P
 GSM467729
Dmel_wt_sRNAseq
 GSM322208
3rd instar #2
 GSM609243
KC+48 #1
 SRR014279
Ovary_rep1_w1118(fem)_x_wK(male)_F1
 GSM379054
Flam Heterozygote
 SRR014277
Ovary_rep1_NA_P
 V038
Felix sample S2 only
 GSM385822
OSS_s8		 GSM286613
0-1hr #1 (A)
 GSM180335
imaginal discs
 GSM379061
Squ Heterozygote
 GSM313164
ago2 homozygous, oxidized (technical replicate #1)
 GSM313165
ago2 homozygous, oxidized (technical replicate #2)
 SRR031694
2'-O-methylated small RNAs from Oregon R
 GSM322245
3rd instar #1
 GSM379060
SpnE Heterozygote
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 SRR060652
hs-Penelope_testes_total
 SRR060643
A2_testes_total
 GSM272653
KC -48 #1
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 SRR060645
yw67c23(2)_testes_total
 SRR014282
Ovary_rep1_wK_P
 GSM385821
OSS_s7		 GSM467730
Dmel_r2d2_sRNAseq
 GSM379058
Piwi Heterozygote
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2		 GSM361908
s2-48 Biological Replicate #2
 GSM312995
WT, oxidized
 V135
CME W2 (wing disc line)		 SRR001346
ago2_beta-eliminated
 GSM399106
female body #2
 SRR014273
Ovary_rep1_Har_P
 SRR060650
A1_testes_total
 GSM379067
SpnE Mutant
 GSM379053
Aub Mutant
 GSM322338
2-4day pupae#2
 GSM286602
male body
 GSM424739
S2 parental
 SRR317116
genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies
 GSM272652
S2 -48 Biological Replicate #1
 GSM239052
S2 cells, non beta-eliminated
 SRR298712
strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant
 GSM379059
Piwi Mutant
 GSM280085
WT testes (18-24nt)
 GSM280084
loqs-/- ovaries (18-29nt)
 GSM180331
early embryo (2-6)
 GSM180336
pupae: 0-1 day, 0-2 day, 2-4 day
 SRR032092
mock oxidized
 GSM280083
dcr-2-/- ovaries (18-29nt)
 GSM286603
female body
 GSM379055
Flam Mutant
 SRR010954
Aub trans-heterozygotes, oxidized
 GSM467731
Dmel_loq_sRNAseq
 GSM180334
larvae: 1st instar and 3rd instars
 GSM272651
S2-48,+48, KC-48, +48 mix
 SRR001340
IR_beta-eliminated
 SRR010955
Aub IP in Ago3 heterozygotes
 SRR010959
Ago3 IP in heterozygotes
AGO3		 SRR010953
Aub heterozygotes, oxidized
 GSM280082
WT ovaries (18-29nt)
 SRR010956
Piwi IP in Ago3 heterozygotes
 GSM246084
D. melanogaster adult male heads 454
 GSM180337
tissue culture cells (S2 only)
 GSM180329
adult bodies (female bodies, male bodies)
 GSM280087
S2cell (AGO2IP)
AGO2		 SRR060651
A2_ovaries_Ago3
AGO3		 SRR001342
WT_males_beta-eliminated
 SRR010958
Piwi IP in Ago3 trans-heterozygotes
 GSM180330
very early embryo (0-1)
 SRR010957
Aub IP in Ago3 trans-heterozygotes
 V003
dsDcr-1 (katsutomo RNA)
 SRR032096
AGO2 IP dcr2 knockdown
AGO2		 GSM239050
fly heads, beta-eliminated
 SRR065804
Piwi-IP_zuc_H-Y_ovaries
 SRR065807
Piwi-IP_squ_het_ovaries
 SRR341116
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 SRR341117
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 SRR060647
A2_ovaries_FLAG-Ago2
AGO2		 SRR010952
Ago3 trans-heterozygotes, oxidized
 SRR010960
wt, oxidized
 SRR060648
A2_ovaries_FLAG-Aub
 SRR023400
total RNA extracted from P19 cells
 SRR065805
Piwi-IP_zuc_het(H-Y)_ovaries
 GSM424741
S2 pKF63 transiently transfected
 SRR060649
A2_ovaries_FLAG-Piwi
 SRR065802
Piwi-IP_zuc_mut_ovaries
 SRR023402
total RNA extracted from NLS-P19 cells
 SRR023197
RNA Library from S2 control cells
 SRR023399
RNA bound by P19 protein
AGO2
.......................................................TTGAGTAGTTTTACCGACACTAT................................................................................................. 23 0 1 165776.00 165776 13885 8530 6362 6867 6325 3717 5094 4839 5746 2980 4396 4839 5395 4824 3501 3945 2392 814 913 1441 3303 2803 1105 2513 2723 882 3788 3089 1470 2440 2594 791 1672 1234 660 394 2587 1687 1649 304 1019 313 253 881 324 551 1089 827 128 514 132 771 217 446 719 879 54 366 719 426 504 740 864 103 287 228 221 697 167 398 647 733 110 542 611 482 541 354 76 77 0 117 290 44 139 21 456 384 227 397 57 83 60 407 83 39 211 123 165 293 54 189 131 87 97 197 159 66 99 169 50 136 176 96 77 97 101 90 227 99 22 207 205 70 132 106 53 157 100 67 9 146 99 60 70 147 65 17 0 38 57 85 74 78 49 146 49 72 45 142 40 45 105 15 67 41 60 65 62 24 24 47 23 44 42 40 33 46 25 109 31 20 34 118 40 61 43 47 69 49 43 88 35 11 8 27 25 79 26 67 44 40 21 56 67 76 36 56 23 28 42 82 42 23 19 32 23 39 46 64 30 58 63 21 35 33 39 19 19 32 37 16 16 28 27 19 14 22 19 3 38 26 23 16 18 8 34 9 1 29 18 10 16 22 6 11 20 18 0 6 8 7 0 6 16 10 10 1 2 0 3 0 6 2 4 5 4 4 0 4 0 2 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGAGTAGTTTTACCGACACTAT................................................................................................. 22 0 1 49902.00 49902 357 2111 2332 1272 1598 4431 2144 1907 1938 2974 1056 1187 91 1920 1222 932 652 215 260 310 859 1654 300 965 1447 278 237 177 354 706 590 180 1111 302 157 105 130 568 153 268 303 199 261 417 79 507 150 227 44 226 22 217 107 431 234 235 55 87 190 67 431 293 32 43 149 51 355 32 46 90 20 24 23 152 56 124 66 203 35 44 1 25 109 20 54 37 87 62 66 81 89 85 24 74 48 25 54 38 20 19 32 49 32 25 11 50 179 29 56 48 23 53 45 122 14 13 41 27 47 31 2 57 62 27 68 22 16 25 20 30 38 21 89 19 20 27 38 25 1 16 13 41 14 28 19 48 4 27 34 6 14 19 13 12 14 5 15 31 23 13 3 12 16 13 16 109 12 14 16 21 9 15 6 12 25 18 15 20 25 13 10 12 11 14 10 6 20 11 8 12 29 7 9 8 16 18 12 22 13 10 15 14 23 9 7 6 8 16 6 13 6 17 11 8 12 6 10 10 8 20 12 6 8 15 9 5 12 7 5 2 8 27 1 7 5 7 8 16 0 3 7 13 8 6 13 7 1 5 1 3 17 3 2 7 3 1 2 1 2 0 1 0 5 0 3 3 1 4 0 0 0 0 0 3 1 4 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................TCGAGTAGTTCGACCGACACTAT................................................................................................. 23 3 1 11187.00 11187 67 31 136 23 20 2 132 11 0 2 37 18 38 0 22 10 1 15 23 10 59 105 62 28 1 51 23 23 1 2 5 54 6 0 47 18 2 3 4 630 1 321 358 0 23 3 5 2 143 274 113 0 742 0 1 0 911 32 2 2 3 0 14 6 151 2 0 1 491 14 20 6 14 0 2 0 5 7 422 380 0 7 3 433 17 277 0 24 158 2 231 98 360 0 5 45 6 14 0 23 240 5 18 23 8 0 0 28 15 33 152 5 0 20 0 39 110 9 1 41 154 0 2 88 27 8 11 9 9 2 43 14 0 10 3 9 84 103 0 12 15 38 44 46 30 0 98 8 20 1 83 31 24 74 1 50 10 37 36 60 44 35 22 23 56 0 67 47 15 2 50 21 44 0 3 21 16 2 4 1 35 3 30 0 37 21 53 4 16 0 7 8 57 25 4 7 26 6 3 19 0 0 1 15 43 12 3 12 0 0 24 0 0 0 0 9 4 14 22 2 2 24 12 5 0 15 9 1 0 41 0 1 12 11 6 17 2 0 25 6 2 0 7 0 0 0 1 0 23 2 0 6 0 0 0 1 0 1 0 0 1 3 0 4 0 0 1 0 2 0 2 1 3 0 3 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0
.........................................................GAGTAGTTTTACCGACACTAT................................................................................................. 21 0 1 7096.00 7096 6 391 349 100 205 1068 314 256 299 773 165 100 3 289 162 127 84 9 8 8 66 251 6 140 113 11 8 7 38 113 79 11 63 44 9 2 0 78 2 7 90 4 7 88 2 201 0 16 2 11 4 38 1 67 14 27 1 2 7 12 49 36 2 0 8 9 118 4 7 4 0 2 1 17 3 19 1 12 1 1 0 0 18 0 3 1 3 5 1 7 4 4 0 2 5 1 12 2 6 0 1 2 1 1 2 12 24 2 7 0 0 9 2 2 1 0 7 2 3 2 0 10 5 0 4 1 1 4 0 3 5 3 38 3 1 1 3 0 0 3 0 2 1 0 0 3 0 2 0 0 0 0 0 6 0 0 0 6 0 0 1 0 0 0 2 15 1 0 0 1 0 4 0 0 0 0 1 0 0 2 0 0 0 54 6 0 0 2 1 7 3 1 0 0 7 0 3 2 3 0 5 1 4 0 1 0 0 2 1 1 0 1 0 0 2 1 3 0 1 1 1 1 0 4 9 0 2 0 0 0 2 2 0 0 1 0 1 2 0 0 0 2 0 0 9 0 0 0 0 0 1 0 0 4 0 0 1 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAGAAGTTTTACCGACACTAT................................................................................................. 23 1 3 7093.33 21280 20 19 57 111 108 5 22 53 0 10 22 99 23 0 146 24 6 1036 1347 1016 36 22 1000 92 12 805 11 9 13 6 11 744 10 22 757 1035 10 9 3 589 2 281 258 1 767 3 8 77 822 161 1075 10 92 8 61 4 42 220 57 18 12 1 5 518 387 14 2 2 20 110 11 3 614 3 2 4 6 12 27 31 0 330 176 20 235 41 0 15 50 1 45 106 23 0 252 281 2 188 0 12 23 0 71 226 186 0 9 163 69 60 45 133 0 34 1 46 9 113 0 93 6 2 2 12 18 168 135 22 71 67 34 19 0 136 215 50 11 21 0 86 115 22 42 13 85 0 1 145 97 1 5 51 13 0 88 3 52 13 30 24 8 31 52 76 10 0 16 26 46 1 2 50 55 1 51 30 32 55 3 0 60 6 24 1 5 29 5 4 32 0 12 53 6 4 6 0 11 6 55 29 11 0 7 27 8 25 41 15 6 0 9 0 0 0 0 9 0 9 7 11 0 11 26 1 5 5 14 40 0 9 0 0 10 4 6 6 0 0 0 2 16 0 1 4 1 2 1 0 1 8 1 3 0 4 0 3 0 0 1 0 8 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0
................................................................................................GTAAAGTGTTGGGAAACTCCTC......................................................... 22 0 1 4149.00 4149 424 92 28 102 94 13 17 19 22 13 18 70 1097 16 42 76 11 0 0 0 30 106 1 61 3 0 122 144 5 8 9 0 3 4 0 0 67 8 50 3 7 1 2 3 0 4 12 10 2 6 0 13 0 2 13 14 0 0 21 134 4 3 38 0 0 1 1 76 11 2 78 5 2 3 17 4 8 3 1 0 0 0 1 0 0 0 7 14 6 3 0 0 0 4 2 0 113 0 2 11 3 72 0 0 5 105 0 1 1 0 0 0 67 0 192 0 1 2 7 1 0 0 0 0 2 0 0 0 0 2 0 0 0 1 0 2 5 0 0 0 0 2 0 0 0 2 0 0 0 18 0 2 5 0 0 12 0 4 0 0 0 0 0 0 0 0 0 0 0 2 0 0 2 4 0 0 0 0 0 56 0 2 0 5 0 0 0 0 0 0 2 1 0 0 1 0 0 0 0 1 0 0 7 0 0 0 0 0 15 0 0 3 0 42 2 2 0 0 0 2 0 0 0 0 0 0 0 0 36 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGAGAAGTTTTACCGACACTAT................................................................................................. 22 1 3 3383.00 10149 12 28 62 166 154 16 23 50 0 15 28 128 16 0 142 37 5 284 399 211 23 80 368 78 15 295 15 12 12 44 56 183 34 17 283 267 6 7 2 531 7 196 323 6 208 3 4 38 344 178 357 4 47 7 43 2 15 68 42 14 10 3 19 212 304 1 11 0 23 64 18 5 185 1 1 13 1 5 15 13 0 79 51 12 105 103 0 8 48 2 49 157 9 0 179 157 0 73 0 12 21 0 21 85 43 0 6 158 66 12 22 38 0 71 1 7 2 54 0 32 4 3 0 7 28 61 88 9 36 19 141 1 1 39 66 7 21 37 0 40 35 25 3 3 32 1 0 49 63 0 9 27 5 0 36 0 14 14 6 17 7 8 57 24 3 0 5 1 42 0 1 45 14 0 17 15 16 19 5 0 9 8 12 2 2 14 0 0 24 0 6 8 1 1 1 0 8 6 28 17 0 1 1 16 2 8 17 3 10 0 2 0 0 0 1 6 0 9 1 6 0 5 10 3 0 5 12 7 0 5 0 1 5 2 3 3 0 0 2 0 3 0 3 2 1 11 0 0 0 1 1 1 0 1 0 0 0 0 0 0 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 1 0 0 0
......................................................TTTGAGTAGTTTTACCGACACTAT................................................................................................. 24 0 1 2296.00 2296 146 76 146 59 75 14 112 97 0 18 72 62 35 0 96 61 47 15 22 18 52 52 29 78 13 22 46 37 25 5 9 18 8 38 23 14 19 34 18 13 2 17 6 4 3 6 20 15 10 9 4 12 11 5 15 0 0 5 9 3 4 4 18 2 14 3 4 6 6 13 1 10 9 10 3 2 13 2 8 2 1 2 4 5 3 7 3 7 2 5 1 2 2 2 5 2 5 1 1 4 4 3 4 3 1 0 4 2 2 5 2 3 3 4 0 1 0 1 1 2 0 0 1 13 1 2 1 2 1 0 0 3 2 2 1 5 0 9 0 0 0 2 2 3 0 0 0 1 4 3 2 1 5 0 0 3 2 4 0 0 8 1 1 2 0 0 1 2 1 0 1 1 3 1 1 0 0 1 2 0 1 0 0 0 0 2 0 0 1 0 2 0 2 1 0 0 1 2 0 0 11 0 3 1 0 5 1 4 0 1 0 0 0 0 0 0 2 6 1 1 1 1 0 1 8 0 0 0 0 1 0 0 0 3 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAGGAGTTTTACCGACACTAT................................................................................................. 23 1 3 2157.33 6472 62 22 25 109 93 5 11 30 0 4 20 74 24 0 176 33 10 352 508 383 21 8 525 96 2 279 3 4 1 3 3 219 0 0 328 381 1 5 1 182 2 192 58 0 100 0 19 45 72 31 86 3 51 0 25 0 13 167 21 3 2 0 3 104 137 11 0 0 12 21 1 2 85 2 3 0 8 1 16 15 0 73 15 3 10 3 0 5 11 0 16 50 6 0 9 34 0 12 1 3 11 0 59 10 43 0 1 3 11 22 15 8 0 15 3 51 3 5 0 21 16 1 0 6 4 21 5 28 2 19 2 12 0 7 16 17 4 4 0 4 10 2 32 9 4 0 1 13 13 0 2 4 15 0 10 3 8 2 28 2 6 12 6 13 5 0 3 3 1 0 0 3 2 0 1 1 5 6 62 0 5 4 3 0 3 12 1 6 2 0 2 0 3 1 4 4 13 6 1 7 1 0 1 2 2 4 8 0 0 0 6 0 0 0 0 5 1 1 2 0 3 3 7 0 1 3 12 2 0 2 0 1 2 2 5 4 0 1 0 1 0 1 0 3 0 1 0 0 0 0 0 2 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................AGTAGTTTTACCGACACTAT................................................................................................. 20 0 1 2048.00 2048 1 47 97 9 7 64 91 118 86 42 162 9 0 78 160 114 78 0 3 1 66 66 5 168 0 8 0 0 38 11 33 3 3 39 0 0 0 32 0 0 65 0 4 46 0 7 0 0 0 1 0 37 0 14 1 0 0 0 0 29 2 18 0 0 0 2 6 0 0 0 0 0 0 2 0 16 0 0 0 0 0 2 0 0 0 1 0 0 0 0 1 0 0 1 0 0 10 0 21 0 0 12 0 0 0 10 0 0 0 0 0 0 11 0 1 0 0 0 1 0 0 1 7 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 28 0 0 0 0 0 3 0 0 0 0 1 0 0 0 1 0 4 0 0 0 0 0 0 0 0 0 0 4 3 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 7 0 0 0 0 0 0 0 0 0 0 4 0 0 1 0 0 0 0 0 0 0 4 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................GAGGAGTTCGACCGACACTAT................................................................................................. 21 3 4 1854.75 7419 2 94 165 39 60 2 223 21 0 8 36 65 7 0 13 20 0 23 49 19 44 189 128 17 9 48 8 2 0 13 2 35 9 0 27 9 0 5 3 193 1 100 360 0 11 3 2 0 73 232 58 0 186 6 5 4 236 10 1 0 3 0 14 9 76 16 0 2 88 24 36 15 6 1 1 0 1 3 118 98 0 2 12 70 10 291 0 30 63 0 135 254 107 1 11 60 7 5 0 23 72 2 10 23 7 0 3 14 22 16 116 18 0 17 0 108 57 11 1 15 123 0 0 59 37 3 13 20 8 2 313 31 1 5 1 5 49 45 0 17 8 32 32 78 9 0 68 3 22 0 57 17 8 50 12 15 4 24 17 88 71 9 16 12 43 0 53 32 15 4 71 5 25 0 6 14 11 6 5 1 14 22 55 0 13 11 34 13 7 0 20 6 33 20 14 7 24 7 4 4 0 2 6 11 30 8 2 3 6 2 12 0 0 1 0 13 11 22 37 7 10 36 2 7 0 9 3 6 0 4 0 2 9 19 7 7 0 0 53 11 6 1 5 5 1 0 0 0 0 2 0 9 0 0 0 3 0 14 22 0 5 3 0 6 1 0 1 0 2 1 1 4 3 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGTGTAGTTTTACCGACACTAT................................................................................................. 23 1 1 1512.00 1512 58 33 15 9 10 11 2 6 0 16 78 6 29 0 5 103 162 31 57 45 62 0 115 4 19 113 9 11 30 6 2 92 8 14 54 11 13 0 4 0 8 7 2 2 5 1 4 0 1 0 0 6 0 29 0 4 0 31 1 0 0 0 5 1 0 0 9 2 0 9 2 0 1 3 0 0 5 5 0 1 0 4 3 0 9 1 0 1 0 1 1 0 0 0 1 1 0 11 0 1 0 0 3 4 2 0 2 0 6 0 1 1 0 0 0 0 0 3 0 3 0 1 0 0 0 4 2 0 2 1 0 1 0 0 1 0 0 0 0 0 3 0 0 0 4 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0 1 0 0 0 0 0 4 0 0 0 0 1 0 0 2 0 0 1 0 0 2 1 0 0 0 0 1 1 1 0 1 2 0 0 0 3 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 2 1 0 6 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATTGAGTAGTTTTACCGACACTAT................................................................................................. 24 1 1 1450.00 1450 17 18 43 12 15 4 48 39 0 5 64 11 10 0 69 70 21 50 56 67 44 5 70 36 5 71 5 3 17 4 9 39 4 14 57 30 0 17 6 4 4 3 0 2 15 5 4 4 1 0 1 6 0 7 0 5 0 22 1 3 0 2 7 4 2 19 4 3 0 1 1 2 2 0 1 2 2 1 0 1 3 10 1 0 2 0 3 6 1 2 0 0 0 0 4 1 1 0 4 10 1 0 10 0 2 0 1 0 0 14 0 1 0 9 0 0 3 1 0 5 1 1 1 2 1 3 0 3 0 2 0 2 0 0 3 9 1 1 2 0 0 0 0 1 0 0 1 3 2 1 1 1 0 1 2 0 0 0 6 5 0 6 1 3 4 0 1 9 1 0 0 0 8 0 0 0 0 1 2 0 2 1 6 0 0 5 0 2 0 1 0 0 1 1 0 2 8 0 0 1 0 0 1 0 1 0 2 1 1 0 2 0 0 0 0 5 1 4 1 0 1 1 0 0 0 0 0 1 0 0 1 0 2 1 1 1 1 1 0 0 0 0 0 0 0 2 0 0 0 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAGTAGTTTTACCGACACTAC................................................................................................. 23 1 1 1416.00 1416 16 23 18 10 7 12 7 18 0 5 8 7 9 0 15 19 192 0 1 2 11 1 4 14 5 4 27 23 394 16 5 2 1 357 2 0 2 4 10 0 0 0 1 0 2 3 0 0 2 0 0 0 0 1 3 2 0 0 1 5 4 0 0 0 1 0 0 0 0 1 1 0 0 1 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 3 0 0 0 0 0 0 1 0 107 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 3 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 2 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAGTAGTTTTACCGACA..................................................................................................... 19 0 1 1363.00 1363 73 56 54 45 41 0 46 16 41 16 48 32 15 42 11 38 0 49 36 36 22 14 30 9 16 10 98 59 2 30 29 14 17 1 12 34 0 4 0 0 5 0 1 6 2 0 1 1 6 1 0 5 1 0 0 0 0 1 3 0 5 4 39 7 3 4 0 0 1 6 15 11 0 0 0 3 1 3 0 1 0 5 0 0 1 0 0 7 1 0 0 0 0 0 2 0 2 0 0 16 0 0 1 2 0 2 1 1 0 0 2 0 0 0 0 0 0 0 0 2 6 0 1 0 1 0 0 2 0 0 0 3 0 0 0 1 0 1 0 0 0 0 0 2 1 2 0 3 2 0 1 0 1 0 0 0 3 0 4 0 0 3 0 3 1 1 2 0 0 0 0 0 1 0 1 2 1 1 1 0 2 2 3 0 0 0 2 3 2 0 0 1 0 2 0 1 0 1 0 1 0 0 0 0 0 3 0 3 0 0 0 1 1 0 0 0 1 0 2 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TCGAGTAGTTTTACCGACACTAT................................................................................................. 23 1 1 1359.00 1359 63 63 21 42 28 9 6 60 0 19 44 16 24 0 17 43 10 17 25 16 34 5 53 18 10 53 21 9 4 8 43 69 5 7 51 17 11 5 3 11 2 4 7 2 25 1 3 4 4 12 8 4 7 7 4 0 6 16 4 9 2 3 0 3 17 1 1 1 5 13 2 0 3 1 1 1 1 3 5 0 0 9 0 4 13 7 2 2 1 1 3 5 1 0 4 2 3 10 0 0 1 0 4 4 10 0 1 1 5 6 0 0 0 1 2 2 0 7 0 0 0 0 0 3 0 0 4 0 9 0 0 1 1 4 2 0 0 0 0 7 2 0 0 0 4 0 0 1 1 1 3 2 4 0 0 0 5 2 0 0 1 1 1 1 0 0 0 0 1 0 0 3 0 0 0 0 1 2 0 0 0 0 0 0 0 1 0 0 4 0 1 1 0 0 0 0 0 0 2 0 2 0 0 0 0 0 1 0 1 0 0 0 0 1 4 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 3 0 0 0 0 0 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAGTAGTTGTACCGACACTAT................................................................................................. 23 1 1 1291.00 1291 7 2 10 75 69 1 3 15 0 1 7 37 0 0 33 8 5 312 211 286 4 0 2 29 3 7 4 4 0 3 0 12 0 2 3 45 2 1 2 0 0 0 10 0 10 0 0 3 3 1 2 0 0 2 2 2 0 0 0 2 4 0 0 2 0 0 0 0 0 1 0 0 3 0 1 1 0 0 0 0 0 6 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 1 0 2 0 0 0 0 3 0 0 1 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGGAGAAGTTTTACCGACACTAT................................................................................................. 23 2 3 1210.67 3632 3 0 1 18 28 0 0 9 0 0 1 14 2 0 11 0 1 562 543 370 0 0 258 7 0 224 1 1 0 1 1 122 0 0 235 471 0 1 0 1 0 0 0 0 127 0 0 8 83 0 75 0 6 0 3 0 0 30 3 0 0 0 0 93 1 0 0 0 0 24 1 0 28 0 0 0 0 0 0 0 0 21 8 0 26 5 0 0 0 0 0 0 0 0 8 13 0 20 0 0 0 0 12 8 13 0 0 13 2 0 1 4 0 0 0 0 0 2 0 3 1 0 0 1 0 5 1 2 2 5 1 0 0 5 4 0 0 1 0 6 6 0 0 0 3 0 0 0 1 0 1 4 0 0 5 0 3 0 0 1 0 2 3 1 0 0 0 0 1 0 0 3 3 0 1 0 2 3 0 0 3 0 1 0 0 3 0 1 4 0 0 0 0 0 0 0 0 0 0 5 0 0 0 4 0 0 5 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAGTCGTTTTACCGACACTAT................................................................................................. 23 1 1 1201.00 1201 74 55 3 14 12 2 2 8 0 30 36 5 21 0 1 41 173 5 9 6 30 1 41 3 29 18 13 23 65 8 4 30 64 62 41 5 4 2 12 0 45 4 2 4 9 4 7 4 0 8 1 34 0 2 13 1 0 19 2 0 0 0 2 0 0 0 0 3 0 7 2 2 6 0 1 0 1 4 0 0 0 3 0 0 0 0 0 0 1 1 0 0 1 0 3 0 0 2 1 1 0 0 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 1 0 3 0 0 0 0 1 2 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 2 0 2 0 1 0 0 3 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 3 0 0 0 8 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGCGTAGTTTTACCGACACTAT................................................................................................. 23 1 1 1091.00 1091 40 50 8 7 4 3 3 6 0 25 44 10 36 0 1 45 185 3 6 3 19 1 6 5 28 1 13 10 84 6 6 1 59 52 4 2 0 0 18 1 51 88 5 9 4 4 5 5 1 0 0 34 1 1 8 0 0 1 3 0 3 3 3 0 0 0 0 1 0 3 1 0 3 1 0 0 2 2 0 0 0 1 1 0 0 0 0 0 1 3 0 0 0 0 1 1 0 2 2 0 0 1 2 1 1 0 0 0 2 0 0 0 0 0 0 0 0 2 0 1 0 1 0 0 1 2 0 0 1 1 0 0 0 1 3 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 1 1 0 0 1 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGAGTAGTTTTCCCGACACTAT................................................................................................. 23 1 1 1086.00 1086 61 37 5 11 6 0 5 33 0 17 24 2 41 0 1 43 201 1 5 1 19 1 8 2 19 2 2 16 108 4 0 2 62 92 3 0 1 0 4 1 20 118 0 1 9 3 8 2 0 0 5 30 0 0 5 0 0 2 1 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 1 0 5 1 0 1 0 1 0 0 1 0 0 0 0 1 0 0 0 0 2 0 0 0 4 0 0 0 2 1 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TCGAGTAGTTCGACCGACACT................................................................................................... 21 3 7 1054.43 7381 8 38 123 33 24 4 164 20 0 7 24 16 5 0 21 12 2 13 25 9 48 136 37 19 2 22 14 14 1 13 3 26 2 0 43 23 1 10 1 305 1 252 269 1 10 4 2 1 56 221 49 3 297 3 1 3 411 22 2 0 5 0 5 8 48 2 0 0 279 11 12 26 10 1 0 1 0 4 191 257 0 2 3 165 17 229 0 13 105 0 199 175 122 0 13 43 5 2 0 20 167 3 7 18 2 0 3 32 16 6 115 4 0 9 0 7 94 8 1 16 133 1 1 84 46 3 7 3 6 1 49 3 0 8 3 6 59 81 0 10 11 59 12 22 18 0 116 7 38 0 90 12 20 75 2 23 5 40 16 41 54 15 17 17 38 0 51 22 17 0 60 20 16 0 4 17 9 5 3 0 19 14 18 0 26 10 39 0 3 0 8 2 58 27 0 1 22 2 2 11 0 0 3 3 13 6 7 1 1 0 8 0 0 0 1 8 0 19 10 4 0 16 7 4 0 11 1 0 0 23 0 0 15 12 2 7 0 0 52 0 2 0 10 2 0 2 0 0 1 6 1 6 0 0 1 0 0 0 1 0 1 0 0 2 1 0 0 0 1 0 0 2 3 0 0 0 0 0 4 0 0 0 1 0 1 0 0 2 1 1
.......................................................TTGAGTAGTTTTACCGAGACTAT................................................................................................. 23 1 1 959.00 959 7 15 15 11 16 0 11 7 0 1 16 3 4 0 17 11 1 209 165 184 13 0 32 23 4 33 2 3 1 5 0 31 0 0 10 36 0 2 0 0 1 1 5 0 6 0 0 6 0 0 1 0 0 0 3 0 0 8 4 1 1 1 0 6 0 0 0 0 0 2 0 0 4 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 1 0 0 0 1 1 2 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGAGGAGTTTTACCGACACTAT................................................................................................. 22 1 3 914.00 2742 39 26 20 81 79 3 6 27 0 10 20 71 6 0 106 21 2 87 135 95 20 22 145 77 1 97 1 1 2 7 18 59 3 1 80 92 0 3 2 175 2 111 78 0 12 1 5 14 29 29 24 3 29 1 13 0 3 34 14 0 5 1 2 55 87 2 0 0 6 11 1 1 17 1 0 4 3 1 13 12 0 26 5 1 6 12 0 3 7 0 17 43 2 0 13 11 0 5 0 3 6 1 12 2 5 0 0 1 1 5 4 6 0 20 1 4 4 2 0 4 1 0 0 2 2 6 1 2 1 14 8 2 0 1 1 3 2 5 0 10 3 3 5 3 3 0 1 6 9 0 7 0 3 2 3 0 1 1 7 1 2 1 1 4 1 0 1 1 1 0 1 2 0 0 2 1 3 3 34 0 0 1 0 1 5 4 0 1 1 0 0 0 2 1 3 1 7 1 2 3 0 1 1 0 0 0 3 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 4 0 1 1 4 0 0 4 0 0 1 0 3 2 0 0 1 0 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TGGAGAAGTTTGACCGACACTAT................................................................................................. 23 3 3 904.67 2714 1 0 0 17 18 0 1 7 0 0 0 15 1 0 15 0 0 597 492 292 0 0 53 6 0 69 0 0 0 0 0 28 0 0 25 459 0 1 0 0 0 0 0 0 42 0 0 3 68 0 61 0 0 0 1 0 0 4 1 0 3 0 0 144 2 0 0 0 0 13 6 0 14 0 0 0 0 0 0 0 0 12 12 0 21 3 0 0 0 0 0 0 0 0 6 5 0 13 0 2 0 0 1 10 4 0 0 7 11 0 1 4 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 4 1 0 0 0 0 18 4 0 0 0 5 0 0 0 2 0 0 10 0 0 3 0 5 0 0 0 0 5 1 9 0 0 0 1 0 0 0 2 1 0 0 1 1 3 0 0 2 0 1 0 0 9 0 0 6 0 0 2 0 0 3 0 0 1 2 8 0 0 1 10 0 0 6 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dm3 chr3R:11243214-11243388 + dme-mir-13a-as TTCAGTCAGTCGGTTATGAAA------TATG---------------------------------------TTTTT--------------TGATC----------------------------C---GCTGCC-G-C-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TGG---CTTGGA--------------------------------------------TCACAAACACTTGTTGGTTTAGCAT--C----CAATCGTT
droSim2 3r:9985569-9985741 - TT----CAGTCGGTTATGAAA------TATG---------------------------------------TTTTT--------------CGATC----------------------------C---GCTGCC-G-A-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAACT-A--TGG---CTTGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCATATC----CAATCGTT
droSec2 scaffold_0:10705018-10705188 - TT----CAGTCGGTTATGAAA------TATG---------------------------------------TTTTT--------------CGATC----------------------------C---GCTGAC-C-A-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAACT-A--TGG---CTTGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCAT--C----CAATCGTT
droYak3 3R:15188542-15188720 - GT----CAATCGATTATGAAA------TATG---------------------------------------TTTGAAA------------TAC---------------------ATGAAATA-A---GTTGCC-G-A-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGGCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TGG---CTTGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCAT--C----CAATCGTT
droEre2 scaffold_4770:10769357-10769528 + TT----CAATCGCTTTTGAAA------TATG---------------------------------------TTTTC----------T---TAACC----------------------------C---GCTTTT-T-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-G--TGT---CTTGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCAT--C----CAATCGTT
droEug1 scf7180000409281:109499-109672 - AA---TAAATCGGTTATGAAA------TATA---------------------------------------ATAAC--------TT----TGACC----------------------------A---GATGCC-G-A-AA--CTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGGCAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---ATCGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCTC--T----CAATCGTT
droBia1 scf7180000302136:835510-835681 + AG---TCGAACGGTTGCGAAA------TGCG---------------------------------------ATTTT--------------TGACC----------------------------G---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-C--AGTGGGCAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---GTTGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCTC--G----CCCCCGTT
droTak1 scf7180000415769:1925938-1926110 - TA----CGAACGGTCACGAAA------TATG---------------------------------------ATTTTAG------------TGCCC----------------------------A---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTGGA-T--AATAGACAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---GTTGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCTC--T----CCACCGTT
droEle1 scf7180000491080:1007084-1007259 + AA---GCAAGCGCTTATAAAA------ACTG---------------------------------------ATTTATG------TC----TATCC----------------------------A---GTTGCT-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AGT-GGGAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---GTCGGA--------------------------------------------TCACGAACACTTGTTGGTTGAGCTT--TTA---TCTCGTT
droRho1 scf7180000779250:92622-92799 - TG----CAATCGCTTATGAAA------CTTG---------------------------------------ATTTT--------------AGCCC----------------------------A---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGGCAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---CCGAC--------------------------------------ATATATATCACGAACACTTGTTGGCTTAGCTT--TTATCC---CATT
droFic1 scf7180000452523:592228-592401 + TA----CAATCGGTTATGGAA------ATTG---------------------------------------ATATT--------------TGCCC----------------------------A---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AACAGACAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---ATGGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCTT--TTGG-CTTTCGCC
droKik1 scf7180000302639:1443181-1443335 - TT----TGAT---TTGCGAAGCGG---TACT---------------------------------------CCTT------------------CT----------------------------G---GCTGCC-G-A-AA--TTCACACGGAACTCATCAAAATGGCTGTGATATGGATAGA-T--AAC-GGTAACATTTCACAGCC-CTTTGAAGAGTTACGTAAGAATC-AGACAT---CTTGGA--------------------------------------------TCACAAACACTTGTTGGCTTA-------------------
droAna3 scaffold_13340:12827566-12827768 + AACA--CAATCGGTTATGACA------TC-------------CTGCCGCCGC--GCC----------------------------CCTT---------------------TC--TGAC--G-GTTTTCT----GAC-GA--TTCCCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AAT-GGCAACATTTCACAGCC-CTTTGAGGAGTTACGTAAGAACT-C--GAT------GGATCGTCCTT--TT---------TTGAGGGGATTCT----------TGTAGCACACTTGTTGGCGTAGCAT--T------ATCCTT
droBip1 scf7180000396691:1710467-1710657 + ------CAATCGGTTACGAAA------TCGC-----------------CTGC----C----------------------------GCGC---------------------CCCACGATGCG-ATTT-T--TT-G-G-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AAT--GCAACATTTCACAGCC-CCTTGAAGAGTTACGTAAGAACT-G--GAT------GGATCTTCGGG--TT----------AGGGGGGCT-------------TCGAGAACACTTGTTGGCGCAGCTT--T------ATCCTT
dp5 2:9824882-9825074 - TC----CGTCCACT-------CTGTGC---------TCCATCCTGCC-CTGC----C----------------------------CCGA---------------------TCGATGAT--G-GATTGCT----GGCCAT--TCCACACGAAACTCATCAAAATGGCTGTGATATGATTTGA-T--AAA-TGCAACATTTCACAACC-GTTTGATGGGTTACGTAAGTATG-G--GGCTGACGGTTT------TTTTTTTTTGT---------------CCAAAAAGTACGAGCCGAACACTTGTT-------------------------
droPer2 scaffold_0:10660021-10660193 + TC----CGTCCACT-------CTGTGC---------TCCATCCTGCC-CTGC----C----------------------------CCGA---------------------TCGATGAT--G-GATTGCT----GGCCAT--TCCACACGAAACTCATCAAAATGGCTGTGATATGATTTGA-T--AAA-TGCAACATTTCACAACC-GTTTGATGGGTTACGTAAGTATG-G-----------GGA--------------------------------------------TGACGGTTTTTTTTT-------TGT--C----CAAATAGT
droWil2 scf2_1100000004902:2143164-2143348 + TC----AATTCACATAT--------------------------------------------------------------------------TCTAAGGATACCATCCATTTCGA----ATACT---GTTGCA-G-G-AATACTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTTGAATAAAAT-GGCAACATTTCACAACCCCCTTGAAGAGTTACGTAAGAAATTC--CAT---CTT----------------TTG----CCGGAACGGATTCC----------AAAAAAACACTTGTTGGCT---------------------
droVir3 scaffold_13047:13335600-13335776 - TGCA--AAAACGATAATC------------GTCCTTGCCAGCCCATT-CTGCCG---ACG--------------------------------------------------AGGGCAAT--G-AATT-T---AAG-C-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGACTTGA-T--AAC-GGCAACATTTCACAACC-CCTTGAAGAGTTACGCAAGAATT-G--AGTGG-GTTGGT-----CTT--TA----------------------------------------------------CGTAT--C----GAAGCGAC
droMoj3 scaffold_6540:10568277-10568507 - TT----CGAATGCAAATGAAG------ATGG---------------------------------------AGATTGAGGTGGA-T----AATCCAGTGACACAAAACGGATGGG----ACAA---TGCTGAAAG-C-AA--TTCACACGAAACTCATCAAAATGGCTGTGATATGACTTGA-T--AAT-GGCTACATTTCACAACC-CCTTGAAGAGTTACGCAAGAATT-G--AATGGGCGGAGA------TCGTTAAGTGTC--------------CCATATAATGAGATGCAAACACTTGTTGGTTGTGTTT--G----TTGTAGTC
droGri2 scaffold_14906:4357641-4357819 + AC----CGGCCCCG-------------------------------------------GCGAGGGACAATGATCAC--------TG----T------------------------------------GATGAAAG-C-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGACTTGA-T--AATA-CCCACATTTCACAACC-CCTTGAAGAGTTACGCAAGAATT-G--GGTGGGCTTGGT------TCGCTCACAGTCTGCAG--ATGTAT-G-----------------------------CAAGAAT--A----AAATAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dm3
TTCAGTCAGTCGGTTATGAAA------TATG---------------------------------------TTTTT--------------TGATC----------------------------C---GCTGCC-G-C-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TGG---CTTGGA--------------------------------------------TCACAAACACTTGTTGGTTTAGCAT--C----CAATCGTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2
...................................................................................................................................................................................................ATTTCACAACC-CTTTGAGGAGT................................................................................................................2216.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000012000001000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................TTTCACAACC-CTTTGAGGAGT................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010100000000000000000000000000000100000000000000001000000000000000
..................................................................................................................................................................................................................TGAGGAGTTACGTAAGAATT-A--................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001010000000000000
...................................................................................................................................................................................................ATTTCACAACC-CTTTGAGGAG.................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
............................................................................................................................................................................ATGAGTAGA-T--AATAGTCG.........................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................ATTTCACAACC-CTTTGAGGAGTT...............................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................TGCC-G-C-GA--TTCGCACGAAA..................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................ACACTTGTTGGTTTAGCAT--C----C.......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TGAGGAGTTACGTAAGAATT-...................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................TCATCAAAATGGCTGTGATATGA..........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CATCAAAATGGCTGTGATATGA..........................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTT--------------TGATC----------------------------C---GCTGCC-G-C-G................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
TT----CAGTCGGTTATGAAA------TATG---------------------------------------TTTTT--------------CGATC----------------------------C---GCTGCC-G-A-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAACT-A--TGG---CTTGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCATATC----CAATCGTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................GAGTTACGTAAGAACT-A--TGG---CTT.......................................................................................2311.00110000000000000000
droSec2
TT----CAGTCGGTTATGAAA------TATG---------------------------------------TTTTT--------------CGATC----------------------------C---GCTGAC-C-A-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAACT-A--TGG---CTTGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCAT--C----CAATCGTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GT----CAATCGATTATGAAA------TATG---------------------------------------TTTGAAA------------TAC---------------------ATGAAATA-A---GTTGCC-G-A-GA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGGCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TGG---CTTGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCAT--C----CAATCGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae
....................................................................................................................................................................................................TTTCACAACC-CTTTGAGGAGTT...............................................................................................................2211.0010010000000
droEre2
TT----CAATCGCTTTTGAAA------TATG---------------------------------------TTTTC----------T---TAACC----------------------------C---GCTTTT-T-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGTCGACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-G--TGT---CTTGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCAT--C----CAATCGTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head
No Reads
droEug1
AA---TAAATCGGTTATGAAA------TATA---------------------------------------ATAAC--------TT----TGACC----------------------------A---GATGCC-G-A-AA--CTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGGCAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---ATCGGA--------------------------------------------TCACGAACACTTGTTGGCTTAGCTC--T----CAATCGTTSizeHit CountTotal NormTotal
No Reads
droBia1
AG---TCGAACGGTTGCGAAA------TGCG---------------------------------------ATTTT--------------TGACC----------------------------G---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-C--AGTGGGCAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---GTTGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCTC--G----CCCCCGTTSizeHit CountTotal NormTotal
No Reads
droTak1
TA----CGAACGGTCACGAAA------TATG---------------------------------------ATTTTAG------------TGCCC----------------------------A---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTGGA-T--AATAGACAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---GTTGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCTC--T----CCACCGTTSizeHit CountTotal NormTotal
No Reads
droEle1
AA---GCAAGCGCTTATAAAA------ACTG---------------------------------------ATTTATG------TC----TATCC----------------------------A---GTTGCT-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AGT-GGGAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---GTCGGA--------------------------------------------TCACGAACACTTGTTGGTTGAGCTT--TTA---TCTCGTTSizeHit CountTotal NormTotal
No Reads
droRho1
TG----CAATCGCTTATGAAA------CTTG---------------------------------------ATTTT--------------AGCCC----------------------------A---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AATAGGCAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---CCGAC--------------------------------------ATATATATCACGAACACTTGTTGGCTTAGCTT--TTATCC---CATTSizeHit CountTotal NormTotal
No Reads
droFic1
TA----CAATCGGTTATGGAA------ATTG---------------------------------------ATATT--------------TGCCC----------------------------A---GCTGCC-G-A-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AACAGACAACATTTCACAACC-CTTTGAGGAGTTACGTAAGAATT-A--TAT---ATGGGA--------------------------------------------TCACGAACACTTGTTGGTTTAGCTT--TTGG-CTTTCGCCSizeHit CountTotal NormTotal
No Reads
droKik1
TT----TGAT---TTGCGAAGCGG---TACT---------------------------------------CCTT------------------CT----------------------------G---GCTGCC-G-A-AA--TTCACACGGAACTCATCAAAATGGCTGTGATATGGATAGA-T--AAC-GGTAACATTTCACAGCC-CTTTGAAGAGTTACGTAAGAATC-AGACAT---CTTGGA--------------------------------------------TCACAAACACTTGTTGGCTTA-------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AACA--CAATCGGTTATGACA------TC-------------CTGCCGCCGC--GCC----------------------------CCTT---------------------TC--TGAC--G-GTTTTCT----GAC-GA--TTCCCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AAT-GGCAACATTTCACAGCC-CTTTGAGGAGTTACGTAAGAACT-C--GAT------GGATCGTCCTT--TT---------TTGAGGGGATTCT----------TGTAGCACACTTGTTGGCGTAGCAT--T------ATCCTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
------CAATCGGTTACGAAA------TCGC-----------------CTGC----C----------------------------GCGC---------------------CCCACGATGCG-ATTT-T--TT-G-G-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTAGA-T--AAT--GCAACATTTCACAGCC-CCTTGAAGAGTTACGTAAGAACT-G--GAT------GGATCTTCGGG--TT----------AGGGGGGCT-------------TCGAGAACACTTGTTGGCGCAGCTT--T------ATCCTTSizeHit CountTotal NormTotal
No Reads
dp5
TC----CGTCCACT-------CTGTGC---------TCCATCCTGCC-CTGC----C----------------------------CCGA---------------------TCGATGAT--G-GATTGCT----GGCCAT--TCCACACGAAACTCATCAAAATGGCTGTGATATGATTTGA-T--AAA-TGCAACATTTCACAACC-GTTTGATGGGTTACGTAAGTATG-G--GGCTGACGGTTT------TTTTTTTTTGT---------------CCAAAAAGTACGAGCCGAACACTTGTT-------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................TGCC-CTGC----C----------------------------CCGA---------------------TCGATGAT--G-................................................................................................................................................................................................................2211.0010010000000
...............................................................................................................................................................................................................................AAGTATG-G--GGCTGACGG.......................................................................................1711.0010000000001
droPer2
TC----CGTCCACT-------CTGTGC---------TCCATCCTGCC-CTGC----C----------------------------CCGA---------------------TCGATGAT--G-GATTGCT----GGCCAT--TCCACACGAAACTCATCAAAATGGCTGTGATATGATTTGA-T--AAA-TGCAACATTTCACAACC-GTTTGATGGGTTACGTAAGTATG-G-----------GGA--------------------------------------------TGACGGTTTTTTTTT-------TGT--C----CAAATAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TC----AATTCACATAT--------------------------------------------------------------------------TCTAAGGATACCATCCATTTCGA----ATACT---GTTGCA-G-G-AATACTCGCACGAAACTCATCAAAATGGCTGTGATATGAGTTGAATAAAAT-GGCAACATTTCACAACCCCCTTGAAGAGTTACGTAAGAAATTC--CAT---CTT----------------TTG----CCGGAACGGATTCC----------AAAAAAACACTTGTTGGCT---------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................A----ATACT---GTTGCA-G-G-AATACT...........................................................................................................................................................................................2011.00101000
............................................................................................................................................................................................................CCCCCTTGAAGAGTTACGTAAGAAAT....................................................................................................2611.00101000
droVir3
TGCA--AAAACGATAATC------------GTCCTTGCCAGCCCATT-CTGCCG---ACG--------------------------------------------------AGGGCAAT--G-AATT-T---AAG-C-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGACTTGA-T--AAC-GGCAACATTTCACAACC-CCTTGAAGAGTTACGCAAGAATT-G--AGTGG-GTTGGT-----CTT--TA----------------------------------------------------CGTAT--C----GAAGCGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
No Reads
droMoj3
TT----CGAATGCAAATGAAG------ATGG---------------------------------------AGATTGAGGTGGA-T----AATCCAGTGACACAAAACGGATGGG----ACAA---TGCTGAAAG-C-AA--TTCACACGAAACTCATCAAAATGGCTGTGATATGACTTGA-T--AAT-GGCTACATTTCACAACC-CCTTGAAGAGTTACGCAAGAATT-G--AATGGGCGGAGA------TCGTTAAGTGTC--------------CCATATAATGAGATGCAAACACTTGTTGGTTGTGTTT--G----TTGTAGTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................TTCACAACC-CCTTGAAGAGTTACC............................................................................................................2411.001000010
......................................................................................................................................................................................................TCACAACC-CCTTGAAGAGTTACT............................................................................................................2311.001000100
.................................................................................................GACACAAAACGGATGGG----A...................................................................................................................................................................................................................1811.001010000
droGri2
AC----CGGCCCCG-------------------------------------------GCGAGGGACAATGATCAC--------TG----T------------------------------------GATGAAAG-C-AA--TTCGCACGAAACTCATCAAAATGGCTGTGATATGACTTGA-T--AATA-CCCACATTTCACAACC-CCTTGAAGAGTTACGCAAGAATT-G--GGTGGGCTTGGT------TCGCTCACAGTCTGCAG--ATGTAT-G-----------------------------CAAGAAT--A----AAATAATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 01/23/2015 at 03:31 PM