ID:

dme-mir-1012

 Coordinate:

chr3R:22687071-22687129 -

 Confidence:

Known Ortholog

 Type:

mirtron

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.7 -22.5 -22.4

Sense Strand Reads

GGCAGTAGCGTTTGTCTATTTGATAGTAAAGCCACAAATCCAAAAGAACGGTGGGTAGAACTTTGATTAATATTGCTTGAAAAATATTAGTCAAAGATTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGC
***********************************...............(((((.((((((((((((((((((........)))))))))))))).)))).))))).................*********************************** 		Read size # Mismatch Hit Count Total Norm Total V146
S1 cell		 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1
 V0632
wt ovary AGO1-IP, reseq
AGO1
 SRR317110
genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies
 V0642
ago2 ovary, AGO1-IP, reseq
AGO1
 SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1
 GSM628272
ago2[414] ovary total RNA
 SRR317113
genotype: CG47711-delta1/CG4771-delta1stage: from 5-6 days old flies
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 V137
Male aged head
 V125
ML-DmD9		 V096
loqsKO/f00791 ovary
 SRR317117
genotype: zuc_hm27/zuc_cd761stage: from 5-6 days old flies
 V147
1182-4H cell		 GSE24545
CS ovary total RNA
 V148
mbn2 		GSM628271
r2d2[1] ovary total RNA  
 V080
Starvation, female head
 SRR317116
genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 GSE24544
dcr-2[L811fsX] ovary total RNA
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 V145
S2-DRSC		 GSM609237
ago2[414] ovary total RNA
 GSM609250
ML-DmD32 cell		 V079
Oxidation, female head
 V140
Dessication_female_body
 V077
cold, female head
 SRR001349
heterozygous_dcr-2_untreated
 V132
ML-DmD32 		SRR031703
Total small RNAs from r2d2 homozygous flies
 V078
Desiccation, female head
 V032
S1 cell		 V127
G2		 V131
ML-DmD16-c3 		SRR031701
Total small RNAs from r2d2 heterozygous flies
 SRR029633
total small RNAs from hen1 homozygous flies
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 V073
mbn2 		V138
Male cold body
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR001347
ago2_untreated
 GSM609231
ago2[414], ovary, AGO1IP
AGO1
 SRR060652
hs-Penelope_testes_total
 V142
Oxidation_female_body
 V141
Heat_female_body
 SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 GSM609230
CS,ovary,AGO1IP
AGO1
 SRR060644
A2_ovaries_total
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1
 GSM609232
r2d2[1] ovary total RNA  
 SRR060643
A2_testes_total
 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR001664
homozygous_dcr-2_untreated
 GSM609234
CS  male total RNA  
 V085
CME W2 wing disc		 GSM313163
dcr-2 heterozygous, untreated
 SRR060645
yw67c23(2)_testes_total
 SRR031699
Total small RNAs from dcr-2 homozygous flies
 SRR031692
Total small RNAs from Oregon R
 V136
Male aged body
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1
 V022
ML-DmD32 cell		 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 V139
Cold_female_body
 V092
dcr-2[G31R] male total RNA  
 SRR060650
A1_testes_total
 V134
ML-DmD8 		GSM313162
dcr-2 homozygous, untreated
 GSM609229
embryo 2-6hr
 GSM609247
heat female head
 GSM313161
dcr-2 heterozygous, oxidized
 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1
 SRR060646
yw67c23(2)_ovaries_total
 V126
CME L1 		GSM322543
male head #1
 V034
ML-DmD16c3 cell		 SRR014280
Ovary_rep1_w1118_P
 SRR341115
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 V086
female body, aged
 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1
 GSM609242
s2+48 #2
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2
 GSM609251
aged female head
 SRR001345
ago2_non-beta-eliminated
 SRR014274
Ovary_rep1_LK(fem)_x_Har(male)_F1
 SRR341118
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 V015
DreRFHV148h
 GSM379051
Armi Mutant
 SRR014281
Ovary_rep1_wK(fem)_x_w1118(male)_F1
 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 V091
fGS/OSS total  		 SRR014270
Embryo_0-2hrs_rep1_NA_0_2hr_Emb
 GSM609225
ML-DmBG3-C2		 GSM609235
CMEL1		 SRR014276
Ovary_rep1_NA(fem)_x_Har(male)_F1
 SRR014275
Ovary_rep1_LK_P
 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 V128
S3 		V006
r2d2 female: possibly heterozygous
 GSM322219
2-4day pupae #1
 SRR298712
strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant
 V074
S3		 GSM609222
ML-DmBG1-C1		 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 GSM609223
male, one day
 V023
Dcr2 female head
 SRR001338
IR_non-beta-eliminated
 SRR014271
Embryo_0-2hrs_rep1_w1118_0_2hr_Emb
 V008
S2-DRSC		 GSM609248
ML-DmD9 cell		 GSM360262
0-2d pupae
 GSM609221
1182-4H cell		 GSM379065
Zuc Heterozygote
 GSM379064
Vasa Mutant
 GSM609238
embryo 14-24hr
 V130
ML-DmBG3-c2 		GSM609227
CMEW1 Cl.8+ cell		 V012
Dcr2 male (Katsutomo, whole fly?)
 GSM609241
s2+48 #1
 SRR014277
Ovary_rep1_NA_P
 SRR014269
Embryo_0-2hrs_rep1_LK_0_2hr_Emb
 V036
ML-DmD20c5 cell		 SRR031693
2'-O-methylated small RNAs from Oregon R
 SRR097865
Drosophila S2-NP cells
 GSM399101
kc167 cell		 SRR014278
Ovary_rep1_w1118(fem)_x_Har(male)_F1
 SRR014279
Ovary_rep1_w1118(fem)_x_wK(male)_F1
 GSM609224
female, one day
 GSM379063
Vasa Heterozygote
 GSM609217
MLDmD20c5		 SRR031696
Ago1-associated small RNAs from Oregon R
AGO1
 SRR298537
strain: vret148-60/vret148-60genotype/variation: Vret Mutant
 GSM379057
Krimp Mutant
 GSM361908
s2-48 Biological Replicate #2
 GSM609249
ML-DmD21 cell		 GSM371638
S2-NP		 GSM322533
female head #1
 SRR341116
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 SRR001348
ago2_oxidized
 GSM609226
CMEW1 Cl.8+ cell		 GSM280083
dcr-2-/- ovaries (18-29nt)
 V129
ML-DmBG1-c1		 V144
OSC		 GSM379056
Krimp Heterozygote
 GSM379060
SpnE Heterozygote
 SRR065801
zuc_het(H-Y)_ovaries
 SRR029030
dcr-2 knockdown
 GSM609220
ML-DmD21 cell		 SRR014272
Embryo_0-2hrs_rep1_wK_0_2hr_Emb
 SRR014282
Ovary_rep1_wK_P
 GSM399100
Kc167 cell		 SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 GSM272652
S2 -48 Biological Replicate #1
 SRR029028
untreated (mock)
 SRR001343
dcr-2_non-beta-eliminated
 GSM343833
S2R+ cell		 GSM609219
GM2 cell		 GSM399107
male body #2
 GSM379050
Armi Heterozygote
 GSM286604
0-1h #3 (7)
 SRR023400
total RNA extracted from P19 cells
 V133
Sg4 		SRR065800
zuc_H-Y_ovaries
 V030
ML-DmD8 cell		 GSM343832
S2R+ cell		 GSM399106
female body #2
 SRR001344
dcr-2_beta-eliminated
 GSM385748
OSS_s6		 SRR001339
WT_females_non-beta-eliminated
 GSM286605
2-6h #1 (8)
 GSM379066
Zuc Mutant
 GSM385822
OSS_s8		 SRR031694
2'-O-methylated small RNAs from Oregon R
 GSM385744
OSS_s2		 SRR097866
Drosophila S2-NP cells
 GSM322245
3rd instar #1
 GSM240749
female head
 GSM313160
dcr-2 homozygous, oxidized
 GSM360260
0-1d Pupae (w)
 SRR060653
hs-Penelope_ ovaries_total
 SRR023402
total RNA extracted from NLS-P19 cells
 GSM609218
Sg4		 SRR341117
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 GSM379062
Squ Mutant
 SRR023399
RNA bound by P19 protein
AGO2
 SRR014273
Ovary_rep1_Har_P
 GSM399105
disk #2
 V037
Felix sample +mirtrons
 GSM286613
0-1hr #1 (A)
 GSM399110
KC-48 #2
 GSM312995
WT, oxidized
 GSM280088
S2cell (AGO1IP)
AGO1
 GSM379052
Aub Heterozygote
 GSM385821
OSS_s7		 GSM379054
Flam Heterozygote
 SRR029031
loqs-ORF knockdown
 V135
CME W2 (wing disc line)		 GSM280084
loqs-/- ovaries (18-29nt)
 GSM379067
SpnE Mutant
 GSM275691
imaginal disc
 V031
GM2 cell		 SRR032093
ago1 knockdown
 GSM379058
Piwi Heterozygote
 GSM424740
S2 pKF63 stably transfected
 SRR023197
RNA Library from S2 control cells
 SRR032092
mock oxidized
 GSM379061
Squ Heterozygote
 SRR032095
AGO1 IP dcr2 knockdown
AGO1
 GSM609239
IR- 2-18hr
 SRR097867
Drosophila S2-NP cells
 V038
Felix sample S2 only
 SRR001341
WT_males_non-beta-eliminated
 GSM343287
Drosophila Toll 10b mutant embryos
 GSM286611
6-10h #2 (11)
 GSM379053
Aub Mutant
 SRR032094
ago2 knockdown
 S6
0-1,2-6,6-10h embryo
 GSM280087
S2cell (AGO2IP)
AGO2
 GSM286601
male head
 GSM609240
IR+ 2-18hr
 GSM286607
6-10h #1 (10)
 SRR060647
A2_ovaries_FLAG-Ago2
AGO2
 GSM280085
WT testes (18-24nt)
 GSM280082
WT ovaries (18-29nt)
 GSM272653
KC -48 #1
 GSM286606
2-6h #2 (9)
 GSM609244
KC+48 #2
 GSM272651
S2-48,+48, KC-48, +48 mix
 V014
DTT 8h
 GSM467729
Dmel_wt_sRNAseq
 SRR023407
RNA bound by NLS-P19 protein
AGO2
 GSM609243
KC+48 #1
 GSM379059
Piwi Mutant
 SRR060651
A2_ovaries_Ago3
AGO3
 GSM286602
male body
 GSM180328
adult heads (female heads, male heads)
 SRR010959
Ago3 IP in heterozygotes
AGO3
 GSM286603
female body
 SRR014268
Embryo_0-2hrs_rep1_HAR_0_2hr_Emb
 SRR032096
AGO2 IP dcr2 knockdown
AGO2
 GSM313164
ago2 homozygous, oxidized (technical replicate #1)
 SRR029032
r2d2 knockdown
 SRR065152
Piwi bound piRNAs from tj GAL4 > RNAi-piwi ovaries
 SRR029033
lacZ knockdown
 GSM313165
ago2 homozygous, oxidized (technical replicate #2)
 SRR010953
Aub heterozygotes, oxidized
 SRR029029
dcr-1 knockdown
 GSM379055
Flam Mutant
 GSM364902
12-24hr embryo
 GSM322208
3rd instar #2
 SRR010954
Aub trans-heterozygotes, oxidized
 GSM180337
tissue culture cells (S2 only)
 GSM467730
Dmel_r2d2_sRNAseq
 GSM180335
imaginal discs
 GSM180334
larvae: 1st instar and 3rd instars
 SRR010956
Piwi IP in Ago3 heterozygotes
 GSM322338
2-4day pupae#2
 SRR001346
ago2_beta-eliminated
 SRR010952
Ago3 trans-heterozygotes, oxidized
 SRR060648
A2_ovaries_FLAG-Aub
 SRR065153
Piwi bound piRNAs from tj GAL4 > RNAi-armi ovaries
 SRR065804
Piwi-IP_zuc_H-Y_ovaries
 GSM180336
pupae: 0-1 day, 0-2 day, 2-4 day
 GSM360256
1st instar #1
 SRR001337
WT_females_beta-eliminated
 SRR001340
IR_beta-eliminated
 SRR065154
Piwi bound piRNAs from tj GAL4 > RNAi-zuc ovaries
 GSM180329
adult bodies (female bodies, male bodies)
 GSM180331
early embryo (2-6)
 GSM180333
late embryo (12-24)
 GSM424739
S2 parental
 SRR010960
wt, oxidized
 SRR065151
Piwi bound piRNAs from tj GAL4 > RNAi-aub ovaries
 V003
dsDcr-1 (katsutomo RNA)
 GSM180330
very early embryo (0-1)
 GSM467731
Dmel_loq_sRNAseq
 SRR010957
Aub IP in Ago3 trans-heterozygotes
 GSM239052
S2 cells, non beta-eliminated
 SRR010958
Piwi IP in Ago3 trans-heterozygotes
 SRR065155
Piwi bound piRNAs from tj GAL4 > RNAi-fs(1)Yb ovaries
 SRR065805
Piwi-IP_zuc_het(H-Y)_ovaries
 GSM180332
mid embryo (6-10)
 GSM239041
fly heads, non beta-eliminated
 GSM246084
D. melanogaster adult male heads 454
 SRR060649
A2_ovaries_FLAG-Piwi
 GSM239050
fly heads, beta-eliminated
 SRR010951
Ago3 heterozygotes, oxidized
 SRR065803
Piwi-IP_zuc_het(mut)_ovaries
......................................................................................TTAGTCAAAGATTTTCCCCATAG.................................................. 23 0 1 68045.00 68045 1348 3685 2615 5281 2789 4595 2895 972 2296 2375 245 478 862 2082 332 170 624 960 353 2246 1905 283 1607 179 396 989 340 354 283 518 193 322 428 643 86 128 241 536 534 240 157 63 397 590 172 112 125 1 485 889 12 584 352 562 428 370 62 79 478 417 375 332 61 460 138 52 89 17 448 65 362 351 77 50 155 360 47 179 132 264 173 17 44 338 46 63 124 241 169 92 314 199 88 26 286 83 116 186 210 65 0 34 93 148 72 70 20 108 55 47 168 156 48 104 170 68 206 215 109 66 52 47 182 133 189 149 12 3 71 85 94 28 149 33 79 112 146 125 60 34 24 11 40 26 138 11 21 121 128 67 39 16 58 93 17 41 82 52 64 59 40 60 94 79 18 15 88 52 19 71 34 23 38 88 77 22 3 23 0 39 50 39 65 30 6 23 7 81 33 55 60 26 68 34 3 18 76 20 66 5 11 23 39 59 26 11 41 0 7 19 32 3 30 3 14 20 5 38 42 18 35 0 17 23 34 0 30 21 11 10 6 22 11 1 17 18 15 3 11 6 14 13 15 1 5 8 0 8 4 0 5 9 10 8 0 9 1 9 10 2 3 2 0 5 0 0 7 2 2 3 0 2 6 4 0 1 0 0 1 0 2 3 1 1 1 2 1 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAT........................................................................................ 21 0 1 51013.00 51013 1694 1714 2393 439 604 522 666 1398 671 305 1796 1282 471 222 1100 1132 779 401 1246 143 326 954 347 832 428 562 961 557 904 335 713 705 718 191 931 174 628 338 416 482 573 717 232 97 380 542 673 2 340 123 684 262 125 93 325 222 594 351 360 139 305 263 518 109 234 346 193 392 171 184 279 165 401 306 307 66 172 285 78 73 236 243 277 49 124 197 151 69 186 190 34 52 190 128 35 121 64 35 43 163 3 123 116 68 163 121 37 93 181 165 81 41 77 94 82 113 35 25 94 90 70 136 44 51 14 37 126 99 70 137 36 136 18 35 106 56 25 29 62 63 160 167 34 32 25 38 75 21 14 43 13 40 23 17 69 44 23 50 84 28 38 60 12 47 50 23 20 40 36 40 48 96 26 23 11 93 76 82 26 28 33 37 21 27 7 14 75 2 39 25 20 12 11 33 59 45 8 50 6 27 22 21 12 14 14 30 11 58 45 12 7 34 9 28 8 19 18 0 3 14 2 28 18 9 7 12 4 4 7 13 14 5 5 5 9 8 6 11 13 16 1 5 3 12 10 0 13 0 9 1 0 1 1 6 2 0 3 2 0 3 4 0 2 1 5 4 0 2 1 2 1 1 0 1 0 3 1 2 0 0 0 0 0 3 2 0 2 2 0 0 0 1
..................................................GTGGGTAGAACTTTGATTAATA....................................................................................... 22 0 1 38185.00 38185 617 697 888 726 169 801 557 2513 632 268 416 1238 688 253 1209 1549 548 914 310 151 330 827 314 878 682 586 249 620 262 138 744 193 194 87 525 1272 134 121 195 321 296 171 89 24 447 411 259 9 131 94 266 99 283 62 75 60 168 520 167 119 100 113 231 103 353 327 225 146 51 362 89 63 49 294 46 116 338 77 318 113 91 99 124 73 207 49 110 70 78 69 77 88 35 155 9 88 161 65 36 74 2 168 107 133 63 95 174 41 74 36 13 33 93 72 70 91 33 24 97 81 132 38 13 52 7 53 113 161 57 25 52 58 32 151 23 32 31 25 78 59 14 46 23 125 22 149 59 15 20 44 75 69 6 26 55 44 20 37 11 54 39 22 18 17 54 88 13 35 55 19 28 15 30 11 27 9 44 7 104 41 9 38 23 40 5 65 22 5 38 8 12 40 9 14 39 5 3 10 11 21 50 8 20 11 31 29 21 24 29 13 19 7 12 35 28 14 3 15 7 0 10 27 0 7 6 29 0 9 15 3 8 7 7 9 6 1 5 10 1 6 0 4 0 6 4 6 6 0 5 1 4 4 4 1 0 1 0 1 2 3 1 2 6 3 0 5 1 3 2 0 6 1 0 1 6 1 4 2 2 2 3 0 0 0 1 1 0 1 0 0 0 0
......................................................................................TTAGTCAAAGATTTTCCCCATAGT................................................. 24 1 1 29181.00 29181 1214 1425 942 811 3156 582 1735 1136 238 345 294 350 1414 255 315 282 671 617 78 194 209 709 179 300 536 128 46 676 94 42 230 34 59 225 186 112 30 39 35 75 324 4 45 620 155 252 266 0 171 169 58 179 225 407 27 26 81 52 0 191 33 26 115 265 69 1 331 102 98 189 0 93 18 0 10 129 133 7 44 177 21 21 105 45 59 17 85 130 13 25 48 137 43 92 102 54 40 143 95 77 0 74 15 18 61 27 10 115 11 22 8 124 30 34 17 34 58 49 15 89 21 34 27 59 64 33 2 15 28 46 74 11 41 12 6 59 30 41 16 40 6 2 7 8 15 13 44 29 33 45 4 19 97 43 11 9 17 24 11 24 32 14 35 4 0 35 36 14 17 14 19 5 18 4 25 4 0 6 7 3 3 0 9 21 0 13 1 21 1 30 8 10 9 15 0 31 5 9 10 45 13 36 16 4 6 5 9 9 0 0 15 24 8 2 9 4 1 4 4 7 3 0 0 7 0 2 0 4 1 4 1 5 6 0 0 0 7 10 2 0 13 5 6 1 0 3 0 0 0 0 0 2 0 1 0 4 0 0 0 2 0 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 3 0 0 0
......................................................................................TTAGTCAAAGATTTTCCCCAT.................................................... 21 0 1 8220.00 8220 5170 180 145 18 295 24 53 34 23 134 21 51 13 65 18 12 150 15 15 13 7 24 44 144 12 17 8 18 8 12 8 15 8 472 3 8 8 23 7 6 18 1 14 56 7 1 7 0 31 28 2 24 1 26 9 10 2 8 7 29 7 8 6 4 3 2 24 3 20 3 7 14 9 2 11 8 5 0 6 3 19 3 8 7 6 4 3 4 23 3 3 11 4 2 23 2 7 6 14 1 0 1 3 2 1 2 4 2 2 0 3 8 34 6 6 2 5 8 0 1 8 8 11 7 15 6 1 1 5 3 6 0 3 1 3 2 5 4 3 3 0 0 1 5 10 0 1 2 6 1 3 3 1 2 4 3 8 4 0 0 2 1 1 0 0 0 0 2 7 0 3 0 0 0 2 1 0 6 3 1 0 3 2 11 1 1 1 2 0 2 1 3 1 0 0 3 1 3 0 2 0 0 0 1 4 0 0 0 0 0 0 2 1 0 0 0 0 0 4 5 0 0 0 0 0 0 2 0 0 7 0 0 1 0 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TTAGTCAAAGATTTTCCCCATA................................................... 22 0 1 6394.00 6394 813 233 188 336 63 446 116 63 113 294 18 64 47 253 37 17 134 82 23 119 94 21 200 80 29 46 27 44 19 22 11 37 30 150 5 23 17 31 32 30 21 3 28 10 18 12 14 1 29 47 1 38 33 45 24 18 8 23 29 58 30 28 10 22 17 8 14 2 24 7 29 19 5 7 24 29 15 8 42 11 19 2 2 22 9 10 34 16 18 19 31 13 8 5 28 11 31 10 13 6 0 1 10 11 6 4 17 20 2 1 7 16 23 11 19 6 24 24 11 3 37 9 15 13 23 12 0 7 7 1 14 3 10 7 12 8 16 6 6 4 3 1 1 22 10 3 1 6 9 11 65 8 8 8 1 7 17 5 6 4 5 5 8 4 0 0 0 2 5 7 9 2 6 3 4 1 0 6 3 2 6 7 6 0 0 6 1 4 1 0 5 5 5 0 0 2 5 2 7 0 1 6 5 3 4 3 2 0 1 0 3 1 5 4 2 1 6 0 3 4 2 0 3 2 0 0 9 5 0 0 3 1 4 0 0 0 2 1 0 1 0 0 6 0 0 5 0 6 0 0 0 1 2 0 1 1 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATT........................................................................................... 18 0 1 4573.00 4573 206 8 7 0 7 3 4 11 1 1 767 3 5 1 2 10 5 4 486 0 5 7 1 229 5 18 217 29 200 44 0 36 88 26 4 0 101 104 35 50 74 123 18 1 16 44 27 0 0 10 35 2 0 2 34 23 35 25 29 3 21 16 37 1 10 59 19 24 14 11 20 4 93 53 16 4 0 16 12 0 6 50 7 1 43 134 0 2 3 15 1 0 14 3 0 15 0 0 1 25 0 1 25 1 35 3 0 9 10 34 11 0 9 21 2 7 0 0 2 1 1 10 0 3 0 3 10 5 11 0 0 8 0 1 8 1 0 0 6 2 1 2 10 4 2 0 7 0 1 0 0 9 2 0 14 7 0 0 4 8 3 0 2 3 37 0 0 3 12 0 0 1 6 0 0 2 3 2 0 0 0 6 0 0 112 1 7 0 1 2 0 4 0 0 2 0 0 1 0 1 0 0 0 0 3 0 0 0 0 0 1 1 0 5 3 3 0 0 0 0 1 0 0 0 0 1 0 0 0 0 2 1 2 0 1 0 2 0 1 0 0 0 0 9 4 0 0 0 3 10 0 0 0 0 9 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTGGGTAGAACTTTGATTAA......................................................................................... 20 0 1 3413.00 3413 51 29 55 6 18 6 9 21 18 5 135 49 10 3 47 33 52 1 164 1 6 25 8 31 2 22 137 20 107 73 49 154 100 12 36 8 106 109 61 32 33 55 47 3 10 21 19 1 10 4 59 5 2 8 59 49 41 33 51 15 54 41 18 1 10 31 12 29 5 8 51 1 19 28 46 4 5 69 4 1 2 27 5 13 3 19 1 1 2 10 2 1 16 5 1 11 1 1 6 14 0 6 7 18 7 10 3 1 20 11 16 0 6 4 4 5 3 0 7 7 2 4 1 0 0 2 14 7 3 0 0 8 2 0 17 0 3 8 2 1 17 2 9 1 0 1 7 1 1 1 6 7 0 0 2 4 4 0 3 4 4 7 1 2 4 4 0 0 0 5 2 8 1 0 0 10 9 10 2 5 6 4 3 0 0 0 2 0 5 1 4 2 0 6 8 2 0 9 0 0 0 1 0 0 0 9 0 0 2 18 0 0 1 0 0 2 19 0 0 2 1 0 2 0 0 1 0 0 7 0 0 0 0 8 0 2 0 0 1 2 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 5 0 0 0 0 0 2 0 0 0 0 0 0 0 0 2 0 1 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 0 0 0
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......................................................................................TTAGTCCAAGATTTTCCCCAT.................................................... 21 1 1 28.00 28 26 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGTCATCGCAAACAGATAAACTATCATTTCGGTGTTTAGGTTTTCTTGCCACCCATCTTGAAACTAATTATAACGAACTTTTTATAATCAGTTTCTAAAAGGGGTATCTAAATAGTTAAAGCCGTTACATGTTTGCGTAGGCCACCACCTCTTTCCCG
***********************************...............(((((.((((((((((((((((((........)))))))))))))).)))).))))).................*********************************** 		Read size # Mismatch Hit Count Total Norm Total V074
S3		 GSM609222
ML-DmBG1-C1		 SRR065154
Piwi bound piRNAs from tj GAL4 > RNAi-zuc ovaries
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2		 SRR029633
total small RNAs from hen1 homozygous flies
 SRR001349
heterozygous_dcr-2_untreated
 V0642
ago2 ovary, AGO1-IP, reseq
AGO1		 SRR031692
Total small RNAs from Oregon R
 SRR001348
ago2_oxidized
 GSM609237
ago2[414] ovary total RNA
 V0632
wt ovary AGO1-IP, reseq
AGO1		 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR001338
IR_non-beta-eliminated
 GSM628272
ago2[414] ovary total RNA
 V079
Oxidation, female head
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1		 V086
female body, aged
 V015
DreRFHV148h
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 V022
ML-DmD32 cell		 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1		 GSM609243
KC+48 #1
 V073
mbn2 		GSM609238
embryo 14-24hr
 GSM272652
S2 -48 Biological Replicate #1
 GSM361908
s2-48 Biological Replicate #2
 GSM609217
MLDmD20c5		 GSM609225
ML-DmBG3-C2		 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 GSM371638
S2-NP		 GSM628271
r2d2[1] ovary total RNA  
 GSM609224
female, one day
 GSM379056
Krimp Heterozygote
 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 SRR029028
untreated (mock)
 GSM609230
CS,ovary,AGO1IP
AGO1		 SRR031701
Total small RNAs from r2d2 heterozygous flies
 GSM609240
IR+ 2-18hr
 SRR010954
Aub trans-heterozygotes, oxidized
 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 SRR032094
ago2 knockdown
 GSM609227
CMEW1 Cl.8+ cell		 GSM286605
2-6h #1 (8)
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 V006
r2d2 female: possibly heterozygous
 GSM609232
r2d2[1] ovary total RNA  
 V085
CME W2 wing disc		 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR032092
mock oxidized
 V030
ML-DmD8 cell		 V145
S2-DRSC		 V146
S1 cell
...............................................................................................................................ACAAGTTTGTGTAGGCCAC............. 19 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCATGTCGATCTTTAGGTTTTCT................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ACCAATCTTGAAACTAGTTAT....................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGTTGAAGCCGTGACATGT.......................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........CAAACAGATAAACAATCATTT................................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCATGTCGTTGTTTAGGTTTTCT................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGCTTGCGTGGGCCACCAC.......... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................TCTCTTGCCACCCATCAAGAAA............................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CATGTTTGCGTACGACACTAC.......... 21 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TCATCGGAAACAGATAAACAA....................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TATCATCTCGGTGTTAAGGTGT................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CGTGATTGCGTAGGCCACCAA.......... 21 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................ACCTAATTATAACGAAATTATTAT......................................................................... 24 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCATTTCGGTGTTAGGGTTTCC................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ATTTCGATGTTAGGGTTTTCT................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TATCATTTCGGTTTTTAGGCCT................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................ATCTTAAAACTAATTATAAGG................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGTATATAGTTAAGGCCGTTAC.............................. 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CTATCATTAAGGTGTTGAGGT..................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TATCCTCTCGGTGTTTCGGTTT................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATGATTTCGGTGTTTTGGTTTAC................................................................................................................. 23 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......TGGCAAACGGAAAAACTATCA.................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TTGCCACCCATCTTTAGAC.............................................................................................. 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCCGCCCATCCTGAAACAAAT.......................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GCCACCCATCTTTAGACTTAT.......................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CTATATAGTTAAGGGCGTTAC.............................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................CGGTTTATAGGTTTGCTTGCC............................................................................................................ 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TAATTAGTTTCAAAATGGGGT..................................................... 21 3 6 0.33 2 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............ATAGATAAACTGTCAGTTCGG.............................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CATTTCGGTGTTAGGGTTTCC................................................................................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCTCCATAGTTAAAACCGTTA............................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTAGGCCACCACGTCTTTG... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TTGCCTACCATCTTGAGACT............................................................................................. 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CCGTTACATGTCGGCCTAGGC................ 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AGGGGTATCTTCCTAGTTAAA...................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GTTTCTAAATGGGATAGCTAA............................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TATCATTTGTGTGTTTAGGTCT................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCCCCCATCTTGTAGCTAAT.......................................................................................... 20 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TAAAAAGTTAAAGCCGTT................................ 18 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CTTTACTTGCCACCCATCTTA.................................................................................................. 21 3 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CAATTCCGTTTTTAGGTTTTCT................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TAGCATTTCGGTGATTAG....................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCTTTTGGGTGTTTAGGATTTC................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TAGTTAAATACGTTACATGTT......................... 21 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TAGTCTTTCGGTGTTTAGGTTT................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTTGGCTACCACCTCTTTACC. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TGCTTGCGTATGGCACCAC.......... 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................CTTGCCTGCCATCTTGAGA............................................................................................... 19 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................AGTGGTATTTAAATAGTTAAG...................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TATGCCACCACCTCTTCCCT. 20 3 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACGCGACAACCTCTTTCCCG 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TTGCCTGCCATCTTGAGACT............................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................CTATCATTTCGGTATTT......................................................................................................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTATCTCGGTGTTTAGGTTTTT................................................................................................................. 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................AGGTTTTCTTGCCTCCGA....................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................ATGAACTTTTTTTAATCAG................................................................... 19 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................CATCGGTTTCTAAAGGGGGTA.................................................... 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTTTTATAATCGATTCCTAAA........................................................... 21 3 19 0.16 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCATTTCGGTGTTAACGTTTA.................................................................................................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTAAAGGGGCTATCTGAAT............................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................ATTTCGGTGGTTAGGGTTTCA................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TAATTAGTTTCAAGAAGGGGT..................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TGTTTCGGTGTTTAGGGTTTCT................................................................................................................ 22 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................CTGCGCAGGCCACCACTTCT...... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CGATCTCGAGACTAATTATAA..................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................AAATAGTTAAGGCCGGGACA............................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AGTTGAAGCTGTTACAAGTTT........................ 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TCATTTCGGGGTTTAGGGCT................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATCTGTGTCTAAATGGGGT..................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TTCGTGCCACCCATTCTGA................................................................................................. 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ACCGATCTTGACACTAGTTA........................................................................................ 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCTTTTTCTAATCATTTTCTAA............................................................ 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................GGGTATCGATATAGTTAA....................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GAACTTTTTATTTTCAGTGTCT.............................................................. 22 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATCTGTTTTTAAAAGGGGT..................................................... 19 2 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGTTTATAATAGGGGTATGT................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................TGAATCTAATTATAAAGAATT............................................................................... 21 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
........................TCATTTCGGTGTTAACATTT................................................................................................................... 20 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTATAAAGAGTTAAAGCCGTT................................ 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................TATCATCTCGGTTTTTAGGA..................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TATCATTTCGGGGTTTTG....................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................CCACCCAGATTAAAACTAAT.......................................................................................... 20 3 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATCAGTTGCAAGAAGGGGT..................................................... 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......CGCAAACAGATAAACGTTTAT................................................................................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................TCGATGTTTGGGTTTTCT................................................................................................................ 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................AAGGAGTCTCTAAATAGGTA........................................ 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................GGAAATAATTTTAACGAACTT.............................................................................. 21 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TATCATGTCGGTGTTTGGTT..................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................GACGCCCATCTTCAAACTA............................................................................................ 19 3 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................TTCGGTGTTGAGGTTTATTTG.............................................................................................................. 21 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................AGTTTCTAATTTGGGTATCT................................................. 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................GTTTTGTTGCCACAAATCTT................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GATGAAGCCGTTAAATGTTT........................ 20 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................TGTTTAGGTTTTCTTACTAG.......................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................GGCCGCCACATGTTTCCCG 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................ATTATAGCGAACTGTTTA.......................................................................... 18 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TAAACTTTTTATAGTCAGTTT................................................................ 21 3 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................TTATGTCGGTGTTTAGGATT................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GTAAAAGCCTGTACATGTTTG....................... 21 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................CTAAGTAGTTAAGGCCGTA................................ 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................AAATGATTAAAGCCGTTA............................... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATCTTTTCGGTTTTTAGGATT................................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................CTTGTTTGCGTAGGTAACC............ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................TCATTCTCTAAAGGGGGTA.................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................TATCGGTGCCTAGGTTTTC................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................AATTATAACGAAGTTTTG........................................................................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................CAGGTTCTAGATGGGGTAT................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................TTTCGGTGCTTAGGTGTTCTA............................................................................................................... 21 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................ATAGTTAAAGACGGGACATG........................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dm3 chr3R:22687021-22687179 - dme-mir-1012 GGCAGTAGCGTTTGTCTATTTGATAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--A-----AAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGC
droSim2 3r:22146720-22146877 - dsi-mir-1012 GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTTGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGAC
droSec2 scaffold_13:1460515-1460672 - dse_25 GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAGGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGC
droYak3 3R:23804810-23804969 + dya_27 GGCAGCAGCGTTTGTCTATTTAATAACAAA--GCCACCAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGC--A-----AGA-------TATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCTGTGGTGGAGAATGGGC
droEre2 scaffold_4820:5353854-5354013 + der_32 GGTAGTAGCGTTTGTCTATTTGACAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAAATC-TTTGATTAGTATTGGTTTC--A-----ATA-------TATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGATTTATCAATCTTGGCAATGTACAAACGCATCCGGTGGTGGAAAATGGGC
droEug1 scf7180000409770:137887-138042 - GGGAGCAGCATTTGTCTGTATAGTCCCAAT--GCTACTAACTCTACAGAACGGTGGGTAAACT-TTTGACTTATATTGTT-----A-----AAA-------TATTAGTC----------------AA------A------------------------------------CTTTT-TCCCCCTAGATTTATCAATTTTGGAAATGTACAATCTCAGCCGGTGGTGGAGAACGGAC
droBia1 scf7180000302113:2951534-2951691 - GGCAGCAGCATTTGTCTGTATAATCCCAAG--GCGAGCAGCCCAAAGGAACGGTGGGTATTCA-TTTAACTAGTATAAATCGA--G-----TTA-------TATTAGTC----------------AA------A------------------------------------TGGAT-T-CCCATAGATTCATCAACTTCGGCAATGTGCAATCGCGCCCAGTGGTGGAGAGGGGGC
droTak1 scf7180000415286:732075-732233 - GGCAGCAGCATTTGTCTGTTTAATCCCAAG--GCCACCAACTCAAAAGAACGGTGGGTACTTACTTTGATTAATACTACTTGC--A-----AAA-------TATTAGTC----------------AA------AT-----------------------------G-----G--AT-T-CCCACAGATTTGTGAGCTTTGGCAATGTGCAATCGCGACCAGTGGTGGAGAACGGGC
droEle1 scf7180000491280:725140-725297 - GGTAGTAGCGTGTGTCTATTCAGTCCCAAA--GCCACGAACTTAAAAGAGCGGTGGGTAAAC--ATTGATTAATACTTTATGT--------GGA-------TGTTAGTC----------------AA------T------------------------------G-----GA-TTTCCTACTCAGATTTATAAATTTTGGCAACGTCCAGTCGCGTCCGGTGGTGGAGAACGGGC
droRho1 scf7180000779166:13443-13600 + GGTAGCAGCGTGTGTTTGTTTAATCCCAAA--GCCACAAATTTAAAAGAACGGTGGGTAAAC--ATTGATTAATATTTTATGC--------GGA-------TATTAGTC----------------AA------T------------------------------G-----G-TTTTTCCCATCAGATTTATCAATCTTGGCAATGTCCAGTCGCGTCCGGTGGTGGAAAATGGGC
droFic1 scf7180000454055:2583585-2583741 - GGCAGCAGCGTGTGTTTATTTAACCCAAAG--GAAACAAATTCAAAGAAACGGTGGGTGAGC--ATTGGTTAATACAGT-GGT--------GCA-------TATTAGTC----------------AA------T------------------------------G-----A-TATTCCCCACTAGATTTATCAATTTGGGAAATGTGCAATCGCGTCCATTGGTGGAGAACGGGC
droKik1 scf7180000297719:58301-58458 + GGCAGCAGCGTGTGTCTGTTCAATCCCAAA--GCCACGGATATGAAGCAGCGGTGAGTTTTAA-TTGGTTGTATATTG-------A-----AAT-------TGCTGATTATA-------------AA------G------------------------------G-----GT-TTCTCTTTATAGTTTCATCAATTTCGGAAATGTACAGTCGCGTCCGGTGGTCGAAAACGGGC
droAna3 scaffold_13340:16646722-16646878 + GGAAGTAGCATTTGTCTTTATGATCCAAAA--GAAAGCGATATAAAAAAGCGGTAGGTTTCAA-CCAAATT-----TCCTTTG--------AGA-------GTTCAGTT----------------AA--CTTTA------------------------------------TATAT-TCTTTTTAGCTTCACTAACTTCGGCAATAGTCAGTCACGACCGGTGGTTGAGAATGGAC
droBip1 scf7180000396424:162644-162805 + GGAAGTAGCATCTGCCTATTTGATCCAAAA--GAAACTGACTTTAAAAAACGGTAGGCATTAT-TTAAATTACTATGGGCTAC--------TAC-------TATTAGCT----------------TA--CTCCA------------------------------------TACTT-TCATTTCAGCTTCACCAACCTGGGTAACAGTCAGTCGCGACCGGTGGTTGAGAATGGAC
dp5 2:4781286-4781453 + GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTT----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGAC
droPer2 scaffold_19:478273-478440 + GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTA----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGAC
droWil2 scf2_1100000004943:2628973-2629129 + GGAAGCAGCATATGTCTATATTCCCCAAAG--GCCACCAATTTGTCAGAACGGTATGGT---------------AGTGCAAGA--A-----AGC-------CGA-AATTCAAAAACACCCTAATTGT----------------------------------------------AACAATTTGCAGATTTGTCAACTTTGGCACGGTCCAATCGAAGCCCGTTGTGGAAAACGGTC
droVir3 scaffold_13047:12018066-12018226 - GGCAGCAGCATTTGCTTGTATTCGCCCAAG--GTCAGCGATCTAAAGAAACGGTACGGATTGT--T-TATTTAAATGCTTT----------ATA-------TATTTATC----------------TATAAG--C------------------------------T---ATCT-TTTTGTTTGCAGTTTCATTAACTTTGGTAATGTACAGTCGAAGCCCGTCATTAAAGACGGCC
droMoj3 scaffold_6540:29763892-29764076 + GGGAGCAGCATTTGTCTTTTTTCCCCTAAA--GAGACCGATTTAAAAAAACGGTGTGTAAATA--TGGATTATTAT-------TTATAAATTATCGAAAACTTA-ACTTCTA-------------AT------G-----------------T-TTTTATATTTATATTTTCA-ACATACTCTCAGTTTCATCAACTTCGGCAATGTACAGACGCAACCCGTATATAAAAACGAGC
droGri2 scaffold_14624:2192612-2192820 - GGCAGCAGTATTTGTTTGTTG--TCGCCAGGCCAGATTGATATCAAGAAGCGGTACGTTCTACATTTGGTTGA-ACTATTCTT--------GAA-------CTTGAGCC-GAAAAAACTTTAGCTGTA-TTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTGT-----GT-TTTTATTTGCAGTTTCATTAACTTTGGCAATGTACAAGCGCAGCCGGAAATCAAGGATGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
dm3
GGCAGTAGCGTTTGTCTATTTGATAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--A-----AAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................23168045.006804500006216241097901003002113823300018339503624785459431476426691211464115128328114921520677390001100000000000000000023232022178810343868821139814850360247160206517017911125182338341861359351022792168383200643412423974051837000000221141151892861565855241210186133859426419993733186175253958842853603321237953452375412416332288191118311555628894173600504483172300000188670001003031081126572528123751905229645951607224620821731171691000302309377481163323476311921740191613847715968602610452266435213298914926144852615590278958436854602895342407020832834283403533511095528791735296039697262261712464486217028347847863411661281931565116124515789354125112211791348332624
....................................................GTGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................21151013.005101300001610001020002000204252140284559373062793601091812348361212511614721825351112058053000000000000000000829650931823137011237286683342016040602021822851329444933814514215471812621908448151023234335222021203001331435412325694335511373673521745395079500132700325338026312676106416346305446287177051901230143412307931231396612101711138027113513204301420099262893561631634393053266715223471432222361677518623009921164017764351413619751906938364023416570281136232944014191707856237128340239397604262171410966663482121371219047189611246165941811363512431254014281398594128392684124277471113295412821729311233890174713231842251817965731935576735427583216941100779
....................................................GTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................22138185.00381850000612011211100000109228002753938294891674531877371141531215201953224332720624090200000000000000000715109011361592015411133911214192230237077125137314184111047172133001401128110289231386006100330010793368703665522552113882629385456374752160751210113113442319532710044134171193351329076466294119116293051104474046060134400510016110435413274637262683306328013141512539146227892001272107499316115165384976955395569353365754917812572353187132318586534028131888241699969710355759321951748826219424931063977458520992839146822513168155146266207124688154982712383385251681498112727448836250231416296225620259411598786171209548
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................24129181.00291810000000000000400001004153600031000000013548541022930973315214149582516090000000000000000000006594044049171311830861414009177241274515015430541818040111985345742260000020113066410212497301309514359467417713743010002404453027390262063513393043443057241104071691911292039810155210000036450000001572115597761811345209238582179194255212113000087115183040121334176251132171969222824341683414622521441283310917194262031561791425265173540752710549459467893151111522122561753611368192102585910514142827093501331867413891122303518913115294324331676266252443001214315671
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2118220.00822000000000000000000000001002003032770001314002500602385200000010000000000000000060310070018010200100110260141170000100000300000331141121000010000002152381241467363112000104032009230810372738115400520112628298000201711000000100000013022111813472324441365190123000010039347118413427330502356244728617630311455629524180453362428881514020831151234223268131224515310188030621182418711144517018150
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2216394.0063940000100000000100000005106900207729290068315371616229341024244500000000000000000000000622133000517020116153750061980615220030322140760106934228122180001000000623281680161310131141113811000506505624310280012328307173378034102445475829000241180000000110000007342086633629494113446200119253191118100052110523317691041915581717466221124150374246125229188106338233221164304171119302723191123232338229638521924717216415513323110711018211444141218081337134
....................................................GTGGGTAGAAC-TTTGATT....................................................................................................................................................................1814573.0045730000000000000000100000200000265320294302100000002110000000000000000000000000000021120000000000100010000021610010020010131116030400018104423001090000010000222103000000137112100010034104016103835592171011233614000191621034100140160202000000000050591253501513101627300000012593901110134215143129103411876421332611218343071728142503015200882174864210825500451135324354375107304101000110377677419292744722920625
....................................................GTGGGTAGAAC-TTTGATTAA..................................................................................................................................................................2013413.0034130000220001000000001000010002842851511019120000130010020300000851000000000000000001089102000004750186041757003469181136200011020161020321047973490200000100001001161000110254000060005910904114917613154410655154161892004684154100501000100001000000720101476561868132222100010071961004190102407101134521400122422220105531852919132103111071001371641720833272122141529593510332549536617849480181353312201921731514752
....................................................GTGGGTAGAAC-TTTGATTA...................................................................................................................................................................1911646.001646000000000000000000000100004021332026010000000000000100000000610000000000000000002000100000210052003250002221101404010032011000001002313125102000000100000002300100010031600000275401463531382114154487142000232114000506000000020001000101047411123010000000000041420002602221022422103105318201423027122321520367507498102311140149188243093611103101201249010191121248151131539929
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2411295.001295000000000000000000000000000001188000111100000000030000000000000000000000000000100010051001011003110000003431000010010240203524115212700000000000230112110100000010020010011130810311111171120000008102000000000000000000000000010119297375220812510080200010300000001300200411012100000000101111034213250110000133211111212103000011135500000001000721201032615
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATC...............................................2611001.0010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080919200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTGGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................231933.00933000010000000000000000001000210000001000000021110001200000720000000000000000000011000001000120002210010600010000001000120001220503300000000000100312231003012110000000013092245510054100000107204400001102030000000000070003202031214281631400922002005113004302201154000201016011101133205835317211433161219160242157225248249223212214322571511030101510013612227252126
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATT...................................................221676.00676000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000010000000000000000010000001000010000000000004000002001000000000091180000206000000000000000000000130031106000000000000010100001000000100000003700001000010012010000000001000000100000000040100000000011200002514010
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................241643.00643000000000000000000000010000010000000001000110001001000000000000000000000000000000050202000012000100011200120031000000000000010000100000000100110001200010000000000000043020107140100000000033310000010000000100000000020017824232281727241011000000010001100010000100001000030191011142133644282910156688111005834100001334200000120000820212057013
....................................................GTGGGTAGAAC-TTTGATTAATAA...............................................................................................................................................................231489.004890000000000000000000000000000000000011000010110000111000000000000000000000000000010200010010100000100000000000000000000000000001022000000010000100000000000101100000000220200052000140000002003000000500000001000000000100033111719561032021022100000102110010100100110010000100100032201410215022201161133103051521601040012213210611003000033000216935
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGC.................................................241449.004490000000000000000000000300000000000000110002100110223000000000000000000000000001000000101000000000000133020100000000000201000205110000000100001400122400304400000000000000000010000000000000230000000110000002000000000231026378288835001010010020110021011002301000010020030002207420164250110131222000002862100112015023002000010011135300421211
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAT..................................................231446.00446000000000000000000000030000000000000010100710031200211000000000000000000000000000013000001070000000000000241000000010110000000140810000000000000110013113010111307202100670400020010000001000182471000701600000011000000000000021122203550020000000202211300100016180140030014131210073216180312021100000000421001210201110000010000200010005826
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................201364.0036400000000000000000000001100000210000160000000200000000010000000000000000000000000210000003000000000000090001000000100500000002001502000200000000000102100000000000000000060000001020220000000221000010000000001000000000000024403060510010000000002000000100001001000000322000000416080210000000000000000000000001000000100000012221000214700
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................251353.003530000000000000000000000100000000000000000000100100010000000000000000000000000000000300000000000000000000001100000000000000000201000000000000000000011101000000000200000000200010100030000000312000000200000000000000000101016844501510000000110001100000100010010000000400400001427037116152003012301010272101211072418555202412101457104405141114
....................................................GTGGGTAGAAC-TTTGATTAATAAA..............................................................................................................................................................241347.003470000000000000000000000000000000000000000000010000000000000000000000000000000000000600020000000001000000000103001000000000000000000000000000000003010010105000000000000000000000000010000000101000000500000060000000000000028510950814180000000000010000000000000010000000000010001131511108000000010910011262190000007214300000000000001110102111
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................221339.003390000000000000000000000000000010000000010100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004001000000100000000000000000201010000000000011200000000000000000000100000031139037000000000001010000000000000000010001201100021732331805070102113001020333311001202520201020010002131004125414
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAA..................................................231331.003310000012110020000000000010000000000000210100100200010010000000000000000000000000000600015010000000000100011004001100000000010001002000000000001002012010010000000000000210000030201020000000211102000600000000000000000001001262587191151930011000000000000100000010000100000211000021514219060110000002000000233000010731100000030010010000002113
....................................................GTGGGTAGAAC-TTTGATTAATT................................................................................................................................................................221298.002980000000000000000000000000000000000001010000000000000010000000000000000000000000010000000020000000000000000000001000300100000000000000000000000000000000000000200000000130010001010500000200200000000100000000000000100012122222403200142000002020000101001130101102011004110071007021210140330010142251041328100080401382051713120285017201110
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAA................................................251182.00182000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000002110000010030000000000210000000000000020000010000000000000000001000002010100000000010000000000000000000000000000002810343732131610010000000000000000000001000010000000000001110001002000000100000000000000010020000010000001000000100
....................................................GTGGGTAGAAC-TTTGATTT...................................................................................................................................................................192181.503630000000000000000000000000000000000000000000001000000000000000000000000000000002000000000000100000100000000000000000000000000001044000000000000000000001000000000000000131011101121031910000200000000000100000000000000000100201000100000010000000300001150310000000000010211010000020000031006181000201400002135200106001001101013102932752101607
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAC..................................................231180.00180000000000000000000000000000000000000200000301000001010000000000000000000000000100000001000000000000000000000000020010000000000201000000000000103001300003010000000000020020010000000100100101100001000000000000000000000108475322630110000000111000010101012020100000101200021205210312100000100100000441300000070100000011000010011101501
....................................................GTGGGTAGAAC-TTTGATTAATC................................................................................................................................................................221176.00176000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000110000000223100000000000010000002000001100000000011000000000010000000000000000000000000000000010000000000200100003200000033120000000001000100000001000007022603000001003000220192331574015021220100022000000010003320
....................................................GTGGGTAGAAC-TTTGATTAATATC..............................................................................................................................................................241160.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001124800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTGGGTAGAAC-TTTGATTAAA.................................................................................................................................................................211159.001590000000000000000000000000000000000000000000000000000000000000000000000000000000011000001020040000000006000000000000000000000103000000000000000000000000000000000000000290000210203221000005000000000200000001000000000000021100402000000000000100000000001000000001002000000130004000200326742110020014302100226300020000000103002101921
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................221133.0013300000000000000000000000000000000000010000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000020001000010001000000000000100010000000000092000000000101000000000000000000000101110100000000000000000100010000200100000000100002101280805000000001100000002400000002300200002000030231205219
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................191120.001200000000000000000000000000000001021000000000000000000000000000000000000000000000000000000000000100000000010000000000003000000001240000800000000000000000000000000000000014010012100000202000212000002000000000000000000000002100100000000000000000000000000000000100000600101005254804010000000000010101000001000000000000000000010001900
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAAA...............................................261111.0011100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000000000001000001000000000000000010000000000000000000000000000101110417286400000000000000000000000001000000000010000001010102000000000100000000100000000000000010010100010000003
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................231111.001110000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000011010100000000000000120100000000000000000000000000000000000000000000000034741123200000000000001100000000101000000100110101006000612020111100100000120100000100000000001100020111101748
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGG.................................................241107.0010700000000000000000000000000000000000000000001000001000001000000000000000000000100000000000000000000000000011000000000000000000000010000000000000110020000000000000000002201000000041100000010010000100000000000000000000000110201000000000000000000000000000000000000000010002341615110020111200000000116401000000001000101100000010000216
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................231105.0010500001000000000000000000000000000000000000001000000001000000000000000000000000000000000010000000000000000301000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000003000200020110000000000000000000000000000000000000001000001405281140000001101000001301000025101210200000000000201200509
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTA................................................251102.001020000000000000100000000000000000000000000000000000010000000000000000000000000000000201000000000000000000001000000000000000002000010000000000000200010010000000000000000010100010000010000000011000000000000000000000000000093016511100000000000000000000000000000100001011000140227080200000102010000222000000100000000000000000010000104
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTAA...............................................26189.00890000000000000000000000000000000000000000002000000000000000000000000000000000000000000010000000000000000000000000000200000000000000000000000000100000000203000000000000000000000000000000000000000000000000010000000000000084317264100000000000000001000000000000000000001101130101514000000000200000000300000011200000000000000000000201
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................22185.0085000000000000000000000010000000000000000000000000020000000000000000000000000000000000000100021000000002400010000000000000000000001300000000000000000100000030000020000021000002010000000000001100000000000000000000000000002121800400000000000000000000000001000000000020100007011606000000010000010020100000020010000000000000000000002
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATATT.................................................24185.0085000000000000000000000000000000000000000000600010000100000000000000000000000000000002000100040000000000000100000000000000000010300000000000000002103200000010000010000000000000000000000000000700002030000001000000000100000100200020030000100100010000100011030200000100000011220000010000000100000001200000000001000000000010020000600
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATTT..................................................23184.0084000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000030100000406000000000000000000000014000202000100000000000000000010000000000007000000000000000000000000000000000000000000000000000000000000012900
....................................................GTGGGTAGAAC-TTTGATTAAC.................................................................................................................................................................21177.00770000000000000000000000000001000000000000000000000010000000000000000000000000000000000000000000000000000000000010000100001000000020000000000000000000000000000100000000200100001001120000001000000000000000000000000000000000000000000000000000100001100000010000000000001000111010300031003111000013004220130110020100000000030001000211
.....................................................TGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................20174.007400000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000002000110000000000000000000000000000000000000000200000000000000000100112010001300000000000010000000000000000000000001021010100000000000100000000001000000000012001110010040400111000001000000000000000000100200000000000010003111
....................................................GTGGGTAGAAC-TTTGATTAAG.................................................................................................................................................................21174.0074000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000121710000000000000000000000000000000000000000000000000000000000000000010000000000010000000000010001000040206240000000001110121010020000000000000000000100
....................................................GTGGGTAGAAC-TTTGATTAATAAAA.............................................................................................................................................................25171.00710000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000001000000000000091221641100000000000000000000000000000000000000000010001011000000000200001200600000023900000000000000100100000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATACC.................................................24168.00680000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000001110001000000000000010000000000002000000010100000020000000000000000000022012120000000000000000000000010000000000001001000120002050001000001000001313000000140000000000000001001002202
....................................................GTGGGTAGAAC-TTTGATTAATG................................................................................................................................................................22142.0042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000001200000000000021011000010001000000000000000000000000000000000000100000000000000000000000000010100000000010000000000001000000000000101000010020400000012120000001000011010001320
.....................................................TGGGTAGAAC-TTTGATTAATA................................................................................................................................................................21140.0040000000000000000000000000001000000000000100000000000000000000000000000000000000000000000110010001010000000100000000000010000000000000000000000000000000000000000020700001000000100000000000000000000000000000000000001000001002000100000000000000000000000010010000000000100103000001000000000000000001000000100000000000000000020001011
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATC...................................................22139.0039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000205000000000000000001000000110000000000001000000000001000000000100000000000000000000010000000000000000001100000000300000000002000000000000000000011101000000000100000010000000010000000000000000000000900
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................21139.0039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001002000000000000000000000000000000000000500000001060400000111000000000020000000000110000000000010000000902
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................21136.0036000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000020000000000000000000000000000000000000000000000000000000000000000000000001100102000000000000000000000000000000000000001102201100000000000000000000000000000000000100200016050101000000000000000000100000010000000000000000000000000
....................................................GTGGGTAGAAC-TTTGATA....................................................................................................................................................................18134.0034000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000004000000000140000000100110000000000000000000000000000000000000000000000001000010000000000000200000000000000000000003022001010000001000000000000000000050000000100
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCAC....................................................21133.003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000100000000000000000000000000000000000002000000010000000000000000000000000000000000000000000000000000001200
....................................................GTGGGTAGAAC-TTTGATTAATAC...............................................................................................................................................................23133.00330000000000000000000000000000000000000000000100000000000000000000000000000000000010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000100000000000000000100000000000000000000001022000000010200000000000000000000000000000000000002000201000000000000000000200000000010000000000000000001100
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAATC................................................25132.003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................20132.0032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000021000000100010200000000000000000000000000000000000001001100100000000000000000000000000000000000200200000000500000000001200000010000000000000000000000000111000400
droSim2
GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTTGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................GTGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................21113368.00133682536942178681226420531831125670290661057000
....................................................GTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................2219601.0096016533354424215838403066546259225138527000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2318427.008427407912956662441609548372366190122710533141000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2213904.0039047114538048107210818706133118115000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2412122.002122618182277906373832432203000
....................................................GTGGGTAGAAC-TTTGATTAATAAA..............................................................................................................................................................2411591.001591003300581438356164911917000
....................................................GTGGGTAGAAC-TTTGATTAATAA...............................................................................................................................................................2311256.0012562271004573932571226207000
....................................................GTGGGTAGAAC-TTTGATTAA..................................................................................................................................................................2011185.0011858627782443441342132648201000
....................................................GTGGGTAGAAC-TTTGATT....................................................................................................................................................................181545.005453254727122310136693100000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................241530.005301341369001051006339832669000
....................................................GTGGGTAGAAC-TTTGATTAATAAAA.............................................................................................................................................................251402.00402000100152103923510108000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................211375.0037513011292753371067182603000
....................................................GTGGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................231236.002369191324857817104211000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAA..................................................231229.002290005001734102630215000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................201217.00217466381673635825000000
....................................................GTGGGTAGAAC-TTTGATTA...................................................................................................................................................................191213.00213178021328565220125000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................19180.00802122372531205000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCC.......................................................18179.00791100393401012000000
.....................................................TGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................20165.0065293470075730000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAAA...............................................26158.005800020018111791000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTAA...............................................26157.00570001006326200001000
....................................................GTGGGTAGAAC-TTTGATTAAA.................................................................................................................................................................21156.00563200001817861100000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................22156.0056000502300001000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTA................................................25151.00510001009622120100000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAA................................................25150.005000000010141591001000
....................................................GTGGGTAGAAC-TTTGATTAATT................................................................................................................................................................22149.004981102001210230100000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGC.................................................24136.003640200065736300000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAC..................................................23125.002511230041913000000
.....................................................TGGGTAGAAC-TTTGATTAATA................................................................................................................................................................21124.002451610054110000000
....................................................GTGGGTAGAAC-TTTGATTAAC.................................................................................................................................................................21121.0021153000001002000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................24120.002000100081251002000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATACC.................................................24117.001700310001533100000
......................................................GGGTAGAAC-TTTGATTAAT.................................................................................................................................................................19116.0016122000000101000000
....................................................GTGGGTAGAAC-TTTGATTAATATA..............................................................................................................................................................24115.001500000074400000000
......................................................GGGTAGAAC-TTTGATTAATA................................................................................................................................................................20112.001251400001001000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................23110.001000001025100001000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAT..................................................23110.001000010022210101000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2519.00900020024100000000
....................................................GTGGGTAGAAC-TTTGATTAAG.................................................................................................................................................................2119.00910010043000000000
....................................................GTGGGTAGAAC-TTTGATTT...................................................................................................................................................................1918.00851010001000000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAAAA..............................................2717.00700010013100001000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................2017.00721021000001000000
....................................................GTGGGTAGAAC-TTTGA......................................................................................................................................................................1617.00700000001105000000
....................................................GTGGGTAGAAC-TTTGATTAATAG...............................................................................................................................................................2317.00710000041100000000
....................................................GTGGGTAGAAC-TTTGATTAATC................................................................................................................................................................2217.00701000012111000000
....................................................GTGGGTAGAAC-TTTGATTAATATAA.............................................................................................................................................................2516.00600000012210000000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2116.00600031010001000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCC........................................................1716.00600000020112000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2216.00600010021101000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATT...................................................2216.00600010011201000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATACT.................................................2416.00600000023010000000
....................................................GTGGGTAGAAC-TTTGATTAATAC...............................................................................................................................................................2316.00600300012000000000
.......................................................GGTAGAAC-TTTGATTAAT.................................................................................................................................................................1815.00520000000003000000
.............................................................................................................................AA------A------------------------------------GATTT-TCCCCATAGT.................................................1815.00500000000005000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGG.................................................2415.00520000001011000000
....................................................GTGGGTAGAAC-TTTGATTAATATAAA............................................................................................................................................................2614.00400000010300000000
............................................................................................................C----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1814.00400000000004000000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2314.00400010001200000000
........................................................GTAGAAC-TTTGATTAAT.................................................................................................................................................................1714.00400000000103000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATACCA................................................2514.00400000011110000000
........................................................GTAGAAC-TTTGATTAATA................................................................................................................................................................1814.00410200001000000000
....................................................GTGGGTAGAAC-TTTGATTAATATT..............................................................................................................................................................2414.00403010000000000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................2114.00410001101000000000
....................................................GTGGGTAGAAC-TTTGAT.....................................................................................................................................................................1714.00400000001003000000
....................................................GTGGGTAGAAC-TTTGATTAATAAAC.............................................................................................................................................................2514.00400000040000000000
....................................................GTGGGTAGAAC-TTTG.......................................................................................................................................................................1523.00600000030003000000
.....................................................TGGGTAGAAC-TTTGATTAATAAA..............................................................................................................................................................2313.00300000001110000000
.....................................................TGGGTAGAAC-TTTGATTAA..................................................................................................................................................................1913.00310010001000000000
....................................................GTGGGTAGAAC-TTTGATC....................................................................................................................................................................1813.00330000000000000000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................2313.00300030000000000000
.....................................................TGGGTAGAAC-TTTGATTAATAA...............................................................................................................................................................2213.00300000001200000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGCA................................................2513.00300000001110000000
.............................................................................................................................AA------A------------------------------------GATTT-TCCCCATAG..................................................1713.00300000000003000000
...........................................................................................................TC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1913.00300010000101000000
..........................................................................................................GTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................2112.00200020000000000000
....................................................GTGGGTAGAAC-TTTGATTAATAAG..............................................................................................................................................................2412.00200000010100000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAA..................................................2412.00200000010100000000
.....................................................TGGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................2212.00200100010000000000
....................................................GTGGGTAGAAC-TTTGATTAATG................................................................................................................................................................2212.00210000001000000000
....................................................GTGGGTAGAAC-TTTGATTAATACA..............................................................................................................................................................2412.00200000011000000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCC.......................................................1912.00200001000010000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCG.....................................................2012.00200200000000000000
....................................................GTGGGTAGAAC-TTTGATTAATAGA..............................................................................................................................................................2412.00200000020000000000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2012.00200011000000000000
....................................................GTGGGTAGAAC-TTTGATTAATATTGC............................................................................................................................................................2612.00200000001100000000
......................................................GGGTAGAAC-TTTGATTAA..................................................................................................................................................................1812.00200000001001000000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................1912.00200001100000000000
.......................................................GGTAGAAC-TTTGATTAATA................................................................................................................................................................1912.00210000000001000000
....................................................GTGGGTAGAAC-TTTGATTAATACAA.............................................................................................................................................................2512.00200000020000000000
....................................................GTGGGTAGAAC-TTTGATTAATATTGCT...........................................................................................................................................................2712.00200000020000000000
.....................................................TGGGTAGAAC-TTTGATTA...................................................................................................................................................................1812.00210000100000000000
.........................................................TAGAAC-TTTGATTAATA................................................................................................................................................................1712.00200000000002000000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................2512.00200000000001001000
....................................................GTGGGTAGAAC-TTTGATTAAAT................................................................................................................................................................2212.00211000000000000000
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2112.00200010100000000000
....................................................GTGGGTAGAAC-TTTGATTAATTA...............................................................................................................................................................2312.00200000010100000000
droSec2
GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAGGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2313479.0034792709236174360
....................................................GTGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................2111946.00194636259156937
....................................................GTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................221876.00876288219157212
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................241758.0075829920767185
....................................................GTGGGTAGAAC-TTTGATT....................................................................................................................................................................181375.003751603356
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................221262.00262174252340
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................221197.00197197000
....................................................GTGGGTAGAAC-TTTGATTAA..................................................................................................................................................................201155.001553846368
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................211101.001013291446
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................24167.006757226
....................................................GTGGGTAGAAC-TTTGATTA...................................................................................................................................................................19150.0050168323
....................................................GTGGGTAGAAC-TTTGATTT...................................................................................................................................................................19134.003427025
.....................................................TGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................20130.003028101
.....................................................TGGGTAGAAC-TTTGATTAATA................................................................................................................................................................21127.002724012
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGC.................................................24127.002710638
....................................................GTGGGTAGAAC-TTTGATTAATT................................................................................................................................................................22127.002767014
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................21120.002020000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................23119.001918001
....................................................GTGGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................23113.00132506
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAC..................................................23111.00119101
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................24110.00105302
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2119.0099000
....................................................GTGGGTAGAAC-TTTGATTAAA.................................................................................................................................................................2119.0094104
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2219.0092214
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGG.................................................2418.0086101
....................................................GTGGGTAGAAC-TTTGATTAATAA...............................................................................................................................................................2318.0085201
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................2018.0082105
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAT..................................................2317.0075101
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTA................................................2516.0062130
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAA..................................................2316.0064011
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATACC.................................................2415.0054010
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAA................................................2515.0053002
.....................................................TGGGTAGAAC-TTTGATTAA..................................................................................................................................................................1914.0044000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2314.0044000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATT...................................................2214.0042200
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................1913.0031020
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTAA...............................................2613.0030030
....................................................GTGGGTAGAAC-TTTGATTAAG.................................................................................................................................................................2113.0033000
.......................................................GGTAGAAC-TTTGATTAAT.................................................................................................................................................................1813.0033000
............................................................................................................C----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1813.0032001
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................2213.0032001
....................................................GTGGGTAGAAC-TTTGATTAATAAAA.............................................................................................................................................................2513.0032100
....................................................GTGGGTAGAAC-TTTGATTAATAAA..............................................................................................................................................................2413.0032001
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................2012.0022000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATTT..................................................2312.0022000
......................................................................................................................................................................................................................ATCCGGTGGTGGAGAAAGGGC2112.0020200
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................2512.0020101
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATATT.................................................2412.0020101
....................................................GTGGGTAGAAC-TTTGATTAAC.................................................................................................................................................................2112.0020101
......................................................GGGTAGAAC-TTTGATTAAT.................................................................................................................................................................1912.0022000
....................................................GTGGGTAGAAC-TTTGATTAAAT................................................................................................................................................................2212.0021100
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATACCA................................................2512.0022000
....................................................GTGGGTAGAAC-TTTGATTTT..................................................................................................................................................................2011.0011000
........................................................................................................................................................................................................................CCGGTGGTGGAGAAAGGGC1911.0011000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCAG....................................................2111.0011000
....................................................GTGGGTAGAAC-TTTGATC....................................................................................................................................................................1811.0010001
...................................................GGTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................2311.0011000
.....................................................TGGGTAGAAC-TTTGATTA...................................................................................................................................................................1811.0011000
..........................................................................................................GTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2011.0011000
..........................................................................................................GTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................1911.0011000
..........................................................................................................GTC----------------AA------A------------------------------------GATTT-TCCCCATAGT.................................................2111.0011000
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................1811.0011000
.........................GTAAA--GCCACTAATCCAAAGGA..........................................................................................................................................................................................2211.0011000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAAA...............................................2611.0010010
...........................................................................................................TC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1911.0011000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAT................................................2511.0011000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAT..................................................2211.0011000
........................AGTAAA--GCCACTAATCCAAAGG...........................................................................................................................................................................................2211.0011000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAAT.................................................2411.0010100
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTG................................................2511.0011000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGG.................................................2311.0011000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGC.................................................2311.0011000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATC...................................................2211.0011000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................1811.0011000
....................................................GTGGGTAGAAC-TTTGATTAATATT..............................................................................................................................................................2411.0010100
...........................................................GAAC-TTTGATTAATATTGCTTGA--------GAA-------T.....................................................................................................................................2711.0010100
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2011.0011000
......................................................GGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................2111.0010001
...........................................................................TTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GA...............................................................2411.0010100
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAGTA................................................2311.0010010
droYak3
GGCAGCAGCGTTTGTCTATTTAATAACAAA--GCCACCAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGC--A-----AGA-------TATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCTGTGGTGGAGAATGGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae
....................................................GTGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................2111230.001230523228131270243140001
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2411042.0010424270866425311417000
....................................................GTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................221579.00579104330152682076000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGT.................................................251214.00214297231552151000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................231211.0021101591189204000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCA.....................................................211165.001650146224101000
....................................................GTGGGTAGAAC-TTTGATT....................................................................................................................................................................181117.0011743141017420000
....................................................GTGGGTAGAAC-TTTGATTAA..................................................................................................................................................................20174.00741325008235000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................23164.006406400000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................22163.006314570181000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCC......................................................20148.0048030170010000
....................................................GTGGGTAGAAC-TTTGATTA...................................................................................................................................................................19139.0039412006125000
.....................................................TGGGTAGAAC-TTTGATTAATA................................................................................................................................................................21128.002822600000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGA.................................................25127.002702151000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAC..................................................24121.002111332110000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................22121.002102100000000
.....................................................TGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................20121.002131700001000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGT.................................................23113.00130800032000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCA.....................................................20113.001301300000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAT..................................................2419.0090300240000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGC.................................................2517.0070250000000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGT.................................................2417.0070700000000
......................................................GGGTAGAAC-TTTGATTAAT.................................................................................................................................................................1917.0073400000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATACC.................................................2516.0060330000000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2215.0050500000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAA..................................................2415.0050310100000
....................................................GTGGGTAGAAC-TTTGATTT...................................................................................................................................................................1915.0051100030000
....................................................GTGGGTAGAAC-TTTGATTAAC.................................................................................................................................................................2115.0054010000000
....................................................GTGGGTAGAAC-TTTGATTAATAA...............................................................................................................................................................2315.0050500000000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................2115.0050500000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCC.......................................................1915.0050410000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATT...................................................2314.0040310000000
.....................................................................................................................................................................................................................CATCCTGTGGTGGAGAATGGGC2214.0040200002000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGAAA...............................................2714.0040301000000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................2013.0030200100000
...................................................................................................................................................................................................................CGCATCCTGTGGTGGAGAATGGGC2413.0030000003000
....................................................GTGGGTAGAAC-TTTGATTAATG................................................................................................................................................................2213.0030300000000
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2513.0030300000000
......................................................GGGTAGAAC-TTTGATTAATA................................................................................................................................................................2013.0030300000000
....................................................GTGGGTAGAAC-TTTGATTAATT................................................................................................................................................................2213.0031110000000
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................2412.0020100010000
.....................................................TGGGTAGAAC-TTTGATTAA..................................................................................................................................................................1912.0020200000000
....................................................GTGGGTAGAAC-TTTGATTAAA.................................................................................................................................................................2112.0021010000000
.............................................................................................................................AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................1812.0020200000000
.......................................................GGTAGAAC-TTTGATTAAT.................................................................................................................................................................1812.0022000000000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCC......................................................1912.0020200000000
..............................................................................................................................................................................................................ACAAACGCATCCTGTGGTGGAGAATGGGC2912.0020000002000
...............................................................................................................................................................................................................CAAACGCATCCTGTGGTGGAGA......2212.0020100001000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGA.................................................2412.0020200000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATATT.................................................2512.0020101000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGG.................................................2512.0020200000000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAC..................................................2212.0020200000000
..................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGAATG...2211.0010000001000
............................................................................................................................................................................................................GTACAAACGCATCCTGTGGTGGAG.......2411.0010010000000
...............................................................................................................................................................................................................CAAACGCATCCTGTGGTGGAGAATGGGC2811.0010000001000
...........................................................................................................................................................................................TTATCAATTTCGGCAATGTACAAAC.......................2511.0011000000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCT......................................................2011.0010100000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGTA................................................2611.0010100000000
...AGCAGCGTTTGTCTATTTAATAACA...............................................................................................................................................................................................................2511.0010000001000
............................................................................................GA-------TATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCA.....................................................2511.0010100000000
...........................................................................TTGCTTGC--A-----AGA-------TATTAGTC----------------A.............................................................................................................2111.0010100000000
..........................................................................................................GTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGA.................................................2211.0010100000000
..................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGAATGGGC2511.0010000001000
..................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGA......1911.0010000001000
......................................................................................................................................................................................................................ATCCTGTGGTGGAGAATGGGC2111.0010000001000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATTT..................................................2411.0010000010000
....................................................GTGGGTAGAAC-TTTGATTAATC................................................................................................................................................................2211.0010010000000
.................................................................................................................................................................................................................AACGCATCCTGTGGTGGAGA......2011.0010000001000
...........................................................................................................TC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2011.0010100000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATC...................................................2311.0010010000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAC....................................................2211.0010010000000
..........................................................................................................GTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGT.................................................2211.0010100000000
...AGCAGCGTTTGTCTATTTAATAAC................................................................................................................................................................................................................2411.0010000001000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCC........................................................1811.0010010000000
..........................................................................................................GTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2111.0010100000000
............................................................................................................C----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................1911.0010100000000
.........................................................................................................................................................................................................................CTGTGGTGGAGAATGGGC1811.0010000001000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................2111.0010100000000
.............................................................................................................................................................................................ATCAATTTCGGCAATGTACAAACG......................2411.0010100000000
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................2311.0010100000000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATACT.................................................2511.0010000010000
..........................................................................................................GTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAC..................................................2111.0010100000000
.....................................................TGGGTAGAAC-TTTGATTAATC................................................................................................................................................................2111.0010100000000
............................................................................................................C----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................1811.0010100000000
....................................................GTGGGTAGAAC-TTTGATTAATAAA..............................................................................................................................................................2411.0010100000000
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCC......................................................2111.0010100000000
......AGCGTTTGTCTATTTAATAACAAA--GC.........................................................................................................................................................................................................2611.0010100000000
.....................................................TGGGTAGAAC-TTTGATTA...................................................................................................................................................................1811.0010100000000
........................................................................................................................................................................................GATTTATCAATTTCGGCAATG..............................2111.0011000000000
............TGTCTATTTAATAACAAA--GCCACC.....................................................................................................................................................................................................2411.0010100000000
.............GTCTATTTAATAACAAA--GCCACCAATCC................................................................................................................................................................................................2811.0010100000000
............................................................................................................C----------------AA------A------------------------------G-----G-TTTTTCCCCATAGT.................................................2011.0010010000000
droEre2
GGTAGTAGCGTTTGTCTATTTGACAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAAATC-TTTGATTAGTATTGGTTTC--A-----ATA-------TATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGATTTATCAATCTTGGCAATGTACAAACGCATCCGGTGGTGGAAAATGGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................24110687.00106878677189174963511200
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................2212375.0023759276194131531127
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................2311250.00125084433321469258
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................231672.0067266900003
....................................................GTGGGTAAATC-TTTGATTAGTA................................................................................................................................................................221558.0055858481081397
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGT.................................................251286.002869524110975
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................251134.00134109501316
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................21190.00908710002
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................22169.00696800001
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAT..................................................24160.00604105716
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCAC.....................................................21159.005935600315
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGT.................................................23159.00596070343
....................................................GTGGGTAAATC-TTTGATTAGT.................................................................................................................................................................21138.003820201123
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................22136.00362901015
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCA......................................................20123.0023701159
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAA..................................................24118.00181302003
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACC....................................................22116.00161141000
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTT...................................................23111.0011710012
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAC..................................................24110.0010531001
......................................................................................................ATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................25110.00101000000
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGT.................................................2419.009900000
..........................................................................................................GTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................2117.007600001
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................2417.007700000
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGC.................................................2517.007500002
.....................................................TGGGTAAATC-TTTGATTAGTA................................................................................................................................................................2116.006600000
...........................................................................................................TC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................2016.006500010
.................................................................................................................................................................................................................AACGCATCCGGTGGTGGAAAATGGGC2616.006000051
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGG.................................................2516.006500001
....................................................GTGGGTAAATC-TTTGATTAG..................................................................................................................................................................2016.006100005
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................2015.005400001
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................2315.005410000
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................2115.005300002
............................................................................................................C----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................1914.004300001
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGAA................................................2514.004400000
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGAA................................................2614.004300010
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTC...................................................2313.003100002
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCC.......................................................1913.003200001
.............................................................................................................................AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................1813.003300000
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTG...................................................2313.003000003
....................................................................................................................................................................................................................GCATCCGGTGGTGGAAAATGGGC2313.003000012
................................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAAATGGGC2713.003100020
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTATT.................................................2512.002100001
...................................................................................................................................................................................................................CGCATCCGGTGGTGGAAAATGGGC2412.002001010
....................................................GTGGGTAAATC-TTTGATT....................................................................................................................................................................1812.002100001
..................................................................................................................................................................................................................ACGCATCCGGTGGTGGAAAATG...2212.002000020
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGTAA...............................................2712.002200000
...............CTATTTGACAGTAAA--GCCACAA....................................................................................................................................................................................................2212.002000011
............................................................................................................C----------------AA------A------------------------------T-----G-TTTTTCCCACTAGT.................................................2012.002200000
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACG....................................................2112.002200000
.GTAGTAGCGTTTGTCTATT.......................................................................................................................................................................................................................1912.002000020
....................................................GTGGGTAAATC-TTTGATTA...................................................................................................................................................................1912.002100010
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGAAA...............................................2711.001100000
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGAG................................................2611.001000010
....................................................GTGGGTAAATC-TTTGATTAGTC................................................................................................................................................................2211.001000001
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACA....................................................2211.001100000
................................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAAATG...2411.001000001
......................................................................................................ATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................2311.001100000
..................................................................................................................................................................................................................ACGCATCCGGTGGTGGAAAATGGGC2511.001000010
............................................................................................................C----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................1811.001100000
...............................................................................................................................................................................................CAATCTTGGCAATGTACAAACGCATC..................2611.001010000
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAC..................................................2311.001100000
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGAAAA..............................................2811.001100000
..........................TAAA--GCCACAAATCCAAAAGAAC........................................................................................................................................................................................2311.001100000
...............CTATTTGACAGTAAA--GCCACA.....................................................................................................................................................................................................2111.001000001
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGCA................................................2611.001100000
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAT..................................................2311.001100000
..........................................................................................................GTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGT.................................................2211.001100000
.................................................................................................................................................................................................................AACGCATCCGGTGGTGGAAAATGGG.2511.001000010
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACCCT..................................................2411.001000100
................................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAA......2111.001000010
.............................................................................................................................AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................1911.001100000
droEug1
GGGAGCAGCATTTGTCTGTATAGTCCCAAT--GCTACTAACTCTACAGAACGGTGGGTAAACT-TTTGACTTATATTGTT-----A-----AAA-------TATTAGTC----------------AA------A------------------------------------CTTTT-TCCCCCTAGATTTATCAATTTTGGAAATGTACAATCTCAGCCGGTGGTGGAGAACGGACSizeHit CountTotal NormTotal
No Reads
droBia1
GGCAGCAGCATTTGTCTGTATAATCCCAAG--GCGAGCAGCCCAAAGGAACGGTGGGTATTCA-TTTAACTAGTATAAATCGA--G-----TTA-------TATTAGTC----------------AA------A------------------------------------TGGAT-T-CCCATAGATTCATCAACTTCGGCAATGTGCAATCGCGCCCAGTGGTGGAGAGGGGGCSizeHit CountTotal NormTotal
No Reads
droTak1
GGCAGCAGCATTTGTCTGTTTAATCCCAAG--GCCACCAACTCAAAAGAACGGTGGGTACTTACTTTGATTAATACTACTTGC--A-----AAA-------TATTAGTC----------------AA------AT-----------------------------G-----G--AT-T-CCCACAGATTTGTGAGCTTTGGCAATGTGCAATCGCGACCAGTGGTGGAGAACGGGCSizeHit CountTotal NormTotal
No Reads
droEle1
GGTAGTAGCGTGTGTCTATTCAGTCCCAAA--GCCACGAACTTAAAAGAGCGGTGGGTAAAC--ATTGATTAATACTTTATGT--------GGA-------TGTTAGTC----------------AA------T------------------------------G-----GA-TTTCCTACTCAGATTTATAAATTTTGGCAACGTCCAGTCGCGTCCGGTGGTGGAGAACGGGCSizeHit CountTotal NormTotal
No Reads
droRho1
GGTAGCAGCGTGTGTTTGTTTAATCCCAAA--GCCACAAATTTAAAAGAACGGTGGGTAAAC--ATTGATTAATATTTTATGC--------GGA-------TATTAGTC----------------AA------T------------------------------G-----G-TTTTTCCCATCAGATTTATCAATCTTGGCAATGTCCAGTCGCGTCCGGTGGTGGAAAATGGGCSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAGCAGCGTGTGTTTATTTAACCCAAAG--GAAACAAATTCAAAGAAACGGTGGGTGAGC--ATTGGTTAATACAGT-GGT--------GCA-------TATTAGTC----------------AA------T------------------------------G-----A-TATTCCCCACTAGATTTATCAATTTGGGAAATGTGCAATCGCGTCCATTGGTGGAGAACGGGCSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGCAGCGTGTGTCTGTTCAATCCCAAA--GCCACGGATATGAAGCAGCGGTGAGTTTTAA-TTGGTTGTATATTG-------A-----AAT-------TGCTGATTATA-------------AA------G------------------------------G-----GT-TTCTCTTTATAGTTTCATCAATTTCGGAAATGTACAGTCGCGTCCGGTGGTCGAAAACGGGCSizeHit CountTotal NormTotal
No Reads
droAna3
GGAAGTAGCATTTGTCTTTATGATCCAAAA--GAAAGCGATATAAAAAAGCGGTAGGTTTCAA-CCAAATT-----TCCTTTG--------AGA-------GTTCAGTT----------------AA--CTTTA------------------------------------TATAT-TCTTTTTAGCTTCACTAACTTCGGCAATAGTCAGTCACGACCGGTGGTTGAGAATGGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................CACGACCGGTGGTTGAGAAT....2012.002100010
.................................................................................................................................................................................................................GTCACGACCGGTGGTTGAGA......2011.001000010
................................................................................................................................................................................................................AGTCACGACCGGTGGTTGA........1911.001100000
....................................................................................................................................................................................................................ACGACCGGTGGTTGAGAATGGA.2211.001100000
droBip1
GGAAGTAGCATCTGCCTATTTGATCCAAAA--GAAACTGACTTTAAAAAACGGTAGGCATTAT-TTAAATTACTATGGGCTAC--------TAC-------TATTAGCT----------------TA--CTCCA------------------------------------TACTT-TCATTTCAGCTTCACCAACCTGGGTAACAGTCAGTCGCGACCGGTGGTTGAGAATGGACSizeHit CountTotal NormTotal
No Reads
dp5
GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTT----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................GCAGTCGCATCCCGTGGTGGA........2111.0010100000000
...........ATGCCTCTACTCTCCCAAG--GC.........................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTG.............2011.0010100000000
.........................................................................................................................................................................................................ACTGTGCAGTCGCATCCCGTGGTGGA........2611.0010000100000
.............GCCTCTACTCTCCCAAG--GCCACAA....................................................................................................................................................................................................2411.0010100000000
...............................................................................................................................................................................................................CAGTCGCATCCCGTGGTGGAGA......2211.0010100000000
............................................................................................................................................................................................CATCAATTTCGGAACTGTGCA..........................2111.0010100000000
..........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTGGTGGA........2511.0010100000000
droPer2
GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTA----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................AGTCGCATCCCGTGGTGG.........1812.002020000
..........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTGGTGG.........2411.001010000
............................................................................................................................................................................................................GTGCAGTCGCATCCCGTGGTGGAGA......2511.001010000
.............GCCTCTACTCTCCCAAG--GC.........................................................................................................................................................................................................1911.001010000
..............................................................................................................................................................................................................GCAGTCGCATCCCGTGGTGGA........2111.001010000
droWil2
GGAAGCAGCATATGTCTATATTCCCCAAAG--GCCACCAATTTGTCAGAACGGTATGGT---------------AGTGCAAGA--A-----AGC-------CGA-AATTCAAAAACACCCTAATTGT----------------------------------------------AACAATTTGCAGATTTGTCAACTTTGGCACGGTCCAATCGAAGCCCGTTGTGGAAAACGGTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............TGTCTATATTCCCCAAAG--GCCACCA....................................................................................................................................................................................................2511.00101000
...........................................................................................................................................................................................................GGTCCAATCGAAGCCCGTT.............1911.00100100
............................................................................................................................................................................................................GTCCAATCGAAGCCCGTTGTGGAAAAC....2711.00100100
.......................................................................................................................................................................................................GCACGGTCCAATCGAAGCC.................1911.00110000
.........................................................................................................................................................................................ATTTGTCAACTTTGGCACGGTCCA..........................2411.00101000
...........................................................................................................................................................................................................GGTCCAATCGAAGCCCGTTGTGGA........2411.00100100
droVir3
GGCAGCAGCATTTGCTTGTATTCGCCCAAG--GTCAGCGATCTAAAGAAACGGTACGGATTGT--T-TATTTAAATGCTTT----------ATA-------TATTTATC----------------TATAAG--C------------------------------T---ATCT-TTTTGTTTGCAGTTTCATTAACTTTGGTAATGTACAGTCGAAGCCCGTCATTAAAGACGGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
..................................CAGCGATCTAAAGAAACG.......................................................................................................................................................................................1818.00870000000000000000000000000010000000000000000000000000000000000
................................GTCAGCGATCTAAAGAAACG.......................................................................................................................................................................................2014.00440000000000000000000000000000000000000000000000000000000000000
.................................TCAGCGATCTAAAGAAACG.......................................................................................................................................................................................1913.00330000000000000000000000000000000000000000000000000000000000000
............TGCTTGTATTCGCCCAAG--GTCAGC.....................................................................................................................................................................................................2411.00100000000000000100000000000000000000000000000000000000000000000
......................CGCCCAAG--GTCAGCGATCTAAAG............................................................................................................................................................................................2311.00100000000000000000000000000000100000000000000000000000000000000
................................GTCAGCGATCTAAAGAAAC........................................................................................................................................................................................1911.00110000000000000000000000000000000000000000000000000000000000000
...........TTGCTTGTATTCGCCCAAG--GTCAGC.....................................................................................................................................................................................................2511.00100000000000000000000000000000000000010000000000000000000000000
...................................................................................................................................................................................................TTTGGTAATGTACAGTCGAAGCC.................2311.00100000000000000000000000000000000000001000000000000000000000000
.................................TCAGCGATCTAAAGAAAC........................................................................................................................................................................................1811.00110000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTAACTTTGGTAATGTACAGT........................2111.00100100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGTACAGTCGAAGCCCGT..............1811.00100000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................AGTCGAAGCCCGTCATTAAA.......2011.00100000000000000010000000000000000000000000000000000000000000000
..............CTTGTATTCGCCCAAG--GTCAGCGAT..................................................................................................................................................................................................2511.00100000000000000000100000000000000000000000000000000000000000000
................TGTATTCGCCCAAG--GTCAGCGATCTA...............................................................................................................................................................................................2611.00100000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................GTCGAAGCCCGTCATTAAAGACGGCC2611.00110000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................GAAGCCCGTCATTAAAGAC....1911.00100100000000000000000000000000000000000000000000000000000000000
.............GCTTGTATTCGCCCAAG--GTCAGCGATC.................................................................................................................................................................................................2711.00100100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TTGGTAATGTACAGTCGAAGCCCGTCA............2711.00100000000000000000000000010000000000000000000000000000000000000
....................TTCGCCCAAG--GTCAGCGAT..................................................................................................................................................................................................1911.00100100000000000000000000000000000000000000000000000000000000000
droMoj3
GGGAGCAGCATTTGTCTTTTTTCCCCTAAA--GAGACCGATTTAAAAAAACGGTGTGTAAATA--TGGATTATTAT-------TTATAAATTATCGAAAACTTA-ACTTCTA-------------AT------G-----------------T-TTTTATATTTATATTTTCA-ACATACTCTCAGTTTCATCAACTTCGGCAATGTACAGACGCAACCCGTATATAAAAACGAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................TTTTTTCCCCTAAA--GAGACCGAT..................................................................................................................................................................................................2311.001100000
.........................CTAAA--GAGACCGATTTAAAA............................................................................................................................................................................................2011.001100000
................................GAGACCGATTTAAAAAAAC........................................................................................................................................................................................1911.001100000
...............CTTTTTTCCCCTAAA--GAGACC.....................................................................................................................................................................................................2111.001100000
..........................................................................................................................................................................................TTCATCAACTTCGGCAATGTACA..........................2311.001100000
........................................................................................................................................................................................GTTTCATCAACTTCGGCAATGT.............................2211.001100000
droGri2
GGCAGCAGTATTTGTTTGTTG--TCGCCAGGCCAGATTGATATCAAGAAGCGGTACGTTCTACATTTGGTTGA-ACTATTCTT--------GAA-------CTTGAGCC-GAAAAAACTTTAGCTGTA-TTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTGT-----GT-TTTTATTTGCAGTTTCATTAACTTTGGCAATGTACAAGCGCAGCCGGAAATCAAGGATGGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 01/23/2015 at 03:28 PM