ID:

hansen-dme-cand-5

 Coordinate:

chr3L:7017299-7017364 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.1 -36.0 -36.0

Sense Strand Reads

CCAGAAGCCAGAACAGAAACGAACTGAACCGAACCGAACAGAAGTTGCAGGACGATGGCGTAGGTGGTGGTATCTCAATTTTGATGGCATAGATAGCACAACTTTTAGCCGTCTCTTGCGGTTCTGACGCTGCGATAGGCAACGTAAAGTTTTCGCTTCTTGAACT
************************************..(((((.((((((((.((((((..((((.(((.(((((...............))))).))).))))...))))))))))))))))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M003
dcr-2[G31R] male total RNA  
 M004
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 V137
Male aged head
 SRR317116
genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies
 GSM609222
ML-DmBG1-C1		 SRR001349
heterozygous_dcr-2_untreated
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 V092
dcr-2[G31R] male total RNA  
 GSM379051
Armi Mutant
 SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 SRR317117
genotype: zuc_hm27/zuc_cd761stage: from 5-6 days old flies
 V133
Sg4 		V080
Starvation, female head
 GSM322543
male head #1
 SRR031703
Total small RNAs from r2d2 homozygous flies
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 GSM609223
male, one day
 V138
Male cold body
 GSM609234
CS  male total RNA  
 GSM628271
r2d2[1] ovary total RNA  
 SRR031692
Total small RNAs from Oregon R
 V0632
wt ovary AGO1-IP, reseq
AGO1
 SRR029633
total small RNAs from hen1 homozygous flies
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1
 V077
cold, female head
 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1
 V078
Desiccation, female head
 GSM609224
female, one day
 V0642
ago2 ovary, AGO1-IP, reseq
AGO1
 SRR010959
Ago3 IP in heterozygotes
AGO3
 SRR010953
Aub heterozygotes, oxidized
 V136
Male aged body
 GSM609230
CS,ovary,AGO1IP
AGO1
 SRR031699
Total small RNAs from dcr-2 homozygous flies
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 GSM609238
embryo 14-24hr
 SRR029608
total small RNAs from hen1 heterozygous flies
 GSM379053
Aub Mutant
 GSM379063
Vasa Heterozygote
 SRR001339
WT_females_non-beta-eliminated
 SRR001347
ago2_untreated
 SRR001348
ago2_oxidized
 SRR001664
homozygous_dcr-2_untreated
 SRR014281
Ovary_rep1_wK(fem)_x_w1118(male)_F1
 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1
 GSM609218
Sg4		 GSE24544
dcr-2[L811fsX] ovary total RNA
 V144
OSC		 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2
 V074
S3		 V131
ML-DmD16-c3 		V091
fGS/OSS total  		 GSM385748
OSS_s6		 V079
Oxidation, female head
 V012
Dcr2 male (Katsutomo, whole fly?)
 GSM385821
OSS_s7		 V086
female body, aged
 V139
Cold_female_body
 T004
OSC
 SRR014277
Ovary_rep1_NA_P
 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1
 SRR001338
IR_non-beta-eliminated
 V073
mbn2 		GSM379058
Piwi Heterozygote
 GSM379065
Zuc Heterozygote
 GSM467729
Dmel_wt_sRNAseq
 GSM322219
2-4day pupae #1
 SRR010954
Aub trans-heterozygotes, oxidized
 SRR014273
Ovary_rep1_Har_P
 SRR060643
A2_testes_total
 SRR060649
A2_ovaries_FLAG-Piwi
 SRR298537
strain: vret148-60/vret148-60genotype/variation: Vret Mutant
 SRR317110
genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies
 GSM609247
heat female head
 GSM609251
aged female head
 V023
Dcr2 female head
 V031
GM2 cell		 GSM609232
r2d2[1] ovary total RNA  
 V096
loqsKO/f00791 ovary
 GSE24545
CS ovary total RNA
 V129
ML-DmBG1-c1		 V142
Oxidation_female_body
 GSM609229
embryo 2-6hr
 GSM385822
OSS_s8		 GSM609225
ML-DmBG3-C2		 V127
G2		 GSM385744
OSS_s2		 GSM371638
S2-NP		 SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 GSM379057
Krimp Mutant
 GSM360262
0-2d pupae
 SRR014268
Embryo_0-2hrs_rep1_HAR_0_2hr_Emb
 SRR032096
AGO2 IP dcr2 knockdown
AGO2
 SRR060650
A1_testes_total
 GSM609217
MLDmD20c5		 V126
CME L1 		GSM609237
ago2[414] ovary total RNA
 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 V006
r2d2 female: possibly heterozygous
 SRR032094
ago2 knockdown
 SRR298712
strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant
 GSM609244
KC+48 #2
 V008
S2-DRSC		 M048
Katsutomo GW182 protein IP
 GSM286602
male body
 SRR014275
Ovary_rep1_LK_P
 SRR029033
lacZ knockdown
 SRR060645
yw67c23(2)_testes_total
 SRR065800
zuc_H-Y_ovaries
 SRR097865
Drosophila S2-NP cells
 SRR031693
2'-O-methylated small RNAs from Oregon R
 GSM379052
Aub Heterozygote
 GSM399107
male body #2
 SRR010955
Aub IP in Ago3 heterozygotes
 M005
ML-DmD32 cell		 V141
Heat_female_body
 GSM609226
CMEW1 Cl.8+ cell		 V032
S1 cell		 GSM609250
ML-DmD32 cell		 V037
Felix sample +mirtrons
 V038
Felix sample S2 only
 GSM609231
ago2[414], ovary, AGO1IP
AGO1
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1
 GSM343287
Drosophila Toll 10b mutant embryos
 SRR060644
A2_ovaries_total
 GSM379056
Krimp Heterozygote
 M006
ML-DmD32 		V034
ML-DmD16c3 cell
.............................................................................................TAGCACAACTTTTAGCCGTCTCT.................................................. 23 0 1 110.00 110 17 15 7 5 0 3 5 3 6 5 3 1 0 0 1 1 2 2 2 1 0 2 1 1 0 1 2 0 2 0 1 0 0 0 0 1 0 1 0 1 0 1 0 2 0 0 1 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 1 1 0 1 0 1 1 0 0 1 1 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCACAACTTTTAGCCGTCTC................................................... 22 0 1 24.00 24 3 3 2 0 0 0 1 0 0 1 0 2 0 3 0 0 0 0 0 0 1 0 0 0 0 0 1 0 1 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCACAACTTTTAGCCGTCT.................................................... 21 0 1 16.00 16 7 3 3 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCACAACTTTTAGCCGTCTCC.................................................. 23 1 1 12.00 12 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATAGCACAACTTTTAGCCGTCTC................................................... 23 0 1 11.00 11 1 2 0 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATAGCACAACTTTTAGCCGTCT.................................................... 22 0 1 10.00 10 3 1 2 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ACGATGGCGTAGGTGGTGGTA.............................................................................................. 21 0 1 5.00 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ACGATGGCGTAGGTGGTGGTAT............................................................................................. 22 0 1 5.00 5 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATAGCACAACTTTTAGCCGTCTCT.................................................. 24 0 1 5.00 5 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................GATAGCACGACTGTTAGC......................................................... 18 2 1 4.00 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................TGGTGGTATCTCAAAATTAAT................................................................................. 21 3 4 3.00 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................CGATGGCGTAGGTGGTGGTA.............................................................................................. 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GGCTCTAGCGGTTCTGACGT.................................... 20 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCACAACTTTTAGCCGTCTCA.................................................. 23 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCCCAACTTTTAGCCGTCTCT.................................................. 23 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAACACAACTTTTAGCCGTCTC................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCACACCTTTTAGCCGTCTCT.................................................. 23 1 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTCTGGTCCGGTTCTGACGCT................................... 21 3 2 1.50 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGTAAGGTTTTAGCTTCGT..... 19 3 11 1.36 15 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 0 0 0 0 0
...............................................................GTGGTGGTCTATCAAGTTTGA.................................................................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATATCACAACTTTTAGCCGTCT.................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................AGTGATAGCACAACTGTTAGC......................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CAGAAGCCGGAACAGAAAC.................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................AATTTTGATGGCATCGTTAG...................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................ACGATGGCGTAGGAGGTGGTATC............................................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................TAGAAGTTGCGGGACGAAGGC........................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................CAGCACAACTTTTAGCCGT...................................................... 19 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................CTAGCCCAACTTTTAGCCGTCTCT.................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................ATTACGCAGGTGGTGGTATCT........................................................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.CAGAATCCAGAGCAGAAACGA................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGACGCTGCGGTAGCCAAC....................... 19 2 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................TAGCACAACTTTTAAACGTCTC................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CAGAAGTTGCAGGACGATGGCGTAGGT..................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................ATAGCCGAACTTTCAGCCGTCT.................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAGCACAACATGTAGCCGTCTCT.................................................. 23 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................CGTAAAGTTATCTCTTCTT..... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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..............................................................................................................................................CGTACGGTTTTAGCTTCTT..... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................TGGATGATTGCGTAGGTGG................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................GGAGAAGGTGGGGGTATCT........................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................AACTTAACAGACCCGAACA.............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGTTCAAGAAGCGAAAACTTTACGTTGCCTATCGCAGCGTCAGAACCGCAAGAGACGGCTAAAAGTTGTGCTATCTATGCCATCAAAATTGAGATACCACCACCTACGCCATCGTCCTGCAACTTCTGTTCGGTTCGGTTCAGTTCGTTTCTGTTCTGGCTTCTGG
***********************************.....(((((((((((((((((((...((((.(((.(((((...............))))).))).))))..)))))).)))))))).)))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM609222
ML-DmBG1-C1		 GSM286604
0-1h #3 (7)
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1		 V074
S3		 GSM609225
ML-DmBG3-C2		 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1		 GSM609223
male, one day
 V144
OSC		 V073
mbn2 		SRR060653
hs-Penelope_ ovaries_total
 GSM385748
OSS_s6		 GSM371638
S2-NP		 SRR014268
Embryo_0-2hrs_rep1_HAR_0_2hr_Emb
 GSE24545
CS ovary total RNA
 GSM609219
GM2 cell		 SRR032094
ago2 knockdown
 SRR029608
total small RNAs from hen1 heterozygous flies
 GSM399110
KC-48 #2
 SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 GSM609218
Sg4		 GSM609229
embryo 2-6hr
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2		 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 GSM609232
r2d2[1] ovary total RNA  
 GSM385822
OSS_s8		 S6
0-1,2-6,6-10h embryo
 SRR001348
ago2_oxidized
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 V091
fGS/OSS total  		 SRR060643
A2_testes_total
 SRR014271
Embryo_0-2hrs_rep1_w1118_0_2hr_Emb
 SRR031692
Total small RNAs from Oregon R
 SRR060646
yw67c23(2)_ovaries_total
 GSM628272
ago2[414] ovary total RNA
 V022
ML-DmD32 cell		 V138
Male cold body
 GSM385744
OSS_s2		 M006
ML-DmD32 		M038
S2-R+ cells, Ago1-IP, dsR2D2
AGO1		 GSM240749
female head
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 SRR060652
hs-Penelope_testes_total
 GSM609250
ML-DmD32 cell		 V0642
ago2 ovary, AGO1-IP, reseq
AGO1		 V080
Starvation, female head
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 V136
Male aged body
 V086
female body, aged
 SRR010954
Aub trans-heterozygotes, oxidized
 GSM609237
ago2[414] ovary total RNA
 SRR001337
WT_females_beta-eliminated
 V0632
wt ovary AGO1-IP, reseq
AGO1		 M036
S2-R+ cells, Ago1-IP, dsDcr1
AGO1		 GSM322338
2-4day pupae#2
 GSM360257
1st instar #2
 SRR010959
Ago3 IP in heterozygotes
AGO3		 SRR065806
Piwi-IP_squ_mut_ovaries
 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 GSM609220
ML-DmD21 cell		 GSM609224
female, one day
 M039
S2-R+ cells, Ago1-IP, dsAgo2
AGO1		 SRR001664
homozygous_dcr-2_untreated
 GSM609217
MLDmD20c5		 GSE24544
dcr-2[L811fsX] ovary total RNA
 M037
S2-R+ cells, Ago1-IP, dsDcr2
AGO1		 GSM609234
CS  male total RNA  
 SRR060650
A1_testes_total
 GSM609238
embryo 14-24hr
 V139
Cold_female_body
 GSM385821
OSS_s7		 T004
OSC
 SRR097867
Drosophila S2-NP cells
 GSM609221
1182-4H cell		 SRR014269
Embryo_0-2hrs_rep1_LK_0_2hr_Emb
 SRR014274
Ovary_rep1_LK(fem)_x_Har(male)_F1
 SRR029633
total small RNAs from hen1 homozygous flies
 GSM628271
r2d2[1] ovary total RNA  
 V092
dcr-2[G31R] male total RNA  
 SRR010953
Aub heterozygotes, oxidized
 V146
S1 cell		 GSM609233
r2d2[1], ovary, AGO1IP
AGO1		 M003
dcr-2[G31R] male total RNA  
 M004
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 SRR014270
Embryo_0-2hrs_rep1_NA_0_2hr_Emb
 SRR060644
A2_ovaries_total
 SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 V015
DreRFHV148h
 GSM609227
CMEW1 Cl.8+ cell		 GSM609231
ago2[414], ovary, AGO1IP
AGO1		 V085
CME W2 wing disc		 V142
Oxidation_female_body
.....................................................GACGACTAAAAGTTGTGCA.............................................................................................. 19 2 2 5.00 10 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TGGCTACCGCAGCGTCAG........................................................................................................................... 18 2 3 4.67 14 0 0 0 0 0 0 0 0 0 4 0 0 4 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................TGGCTACCGCAGCGTCAGT.......................................................................................................................... 19 3 20 3.70 74 0 0 1 0 0 0 1 0 0 6 0 0 1 12 0 0 0 0 0 0 5 0 0 0 3 0 0 0 0 0 1 9 0 2 8 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 3 3 0 0 0 0 2 2 0 2 0 0 0 0 0 0 1 1 0 0 0 1 0 1
.................................................................................GTCAACCTTGAGATACCACC................................................................. 20 3 3 2.33 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGAACCACAAGAGACGGCTG......................................................................................................... 21 3 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGTACCGCAAGATACGGCT.......................................................................................................... 20 3 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATTAATTTTGAGATACCACCA................................................................ 21 3 4 1.50 6 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTCTAGCTATGCCATCAAA............................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AGTTTACGTGGCCTATAGCAG................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGGACCACAAGAGACGGCT.......................................................................................................... 20 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TCTAAGCCATCAAAAATGATATA...................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCGGATACCACCACCTACGCCA....................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................TTGAGAAACTACCACCCACGC......................................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GATACGGCTAAAAGTTGTGT............................................................................................... 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CAGAACCACAAGAGTCGGCTT......................................................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................AGTCCGTATCTGTTCTGGCTT.... 21 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................ATCGCGGTGTCGGAACCGCAA................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AACTTCTGTTCGGTTCGGTTCGGT...................... 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGAACCACAAGAGACGGCTT......................................................................................................... 21 3 2 1.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....GAAGAAGCGAAAACTATACGT............................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................CTTCTGGCCGGTTCGGTTCAG....................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................CGCCATCTTCCTGCACCTTC........................................ 20 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................TAACGCAGCGTCAAAACCGCT.................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CAGGTCGTTTCTGTTCTGGT...... 20 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGCACCACAAGAGACGGCT.......................................................................................................... 20 3 6 0.83 5 0 0 1 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATTTTGAGATACCACCAGC.............................................................. 20 3 11 0.82 9 0 0 0 0 0 0 0 2 0 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CAACCTTGAGATACCACC................................................................. 18 2 4 0.75 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATTAATTTTGAGATACCACC................................................................. 20 3 8 0.75 6 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGAACCACATGAGACGGCT.......................................................................................................... 20 3 3 0.67 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGAACCAGAAGAGACGGCT.......................................................................................................... 20 3 5 0.60 3 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATCAACATTGAGATACCACGG................................................................ 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CGATCCAGTTCGTTTCTGTT........... 20 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................CAGCACCGCAAGAGACGGCA.......................................................................................................... 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATTTTGAGATACCACCAGCT............................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.GTTGAAGAAGCTAAGACTTTA................................................................................................................................................ 21 3 4 0.50 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GACAGAACCGCACGAGAAGGC........................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TCAGATACCACCAACTGCGCCA....................................................... 22 3 4 0.50 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGGGATACTACCATCTACGCCA....................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................GGGACGGGTAAAAGTTCTGCT.............................................................................................. 21 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................TTACGCAGCCTATCGCGGCG............................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGAACCACAAGATACGGCT.......................................................................................................... 20 3 4 0.50 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................TAGAACCACAAGAGTCGGCT.......................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................CACACTTGAGAAACCACCACC.............................................................. 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................CTTTACGCTCCCTCTCGCAGC................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................GGACAGAAGCGCAAGAGACGG............................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ATTGAGATACCACCGCAT............................................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................TTAAATTTGAGATACCACCAG............................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................GTAAGAACCGCAAGAAACGCC........................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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................................................CTAGAGACGGCTAAGGGT.................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................GCCCATCGCAGCGTCAAGA......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CCACCTAAGCCATGGTCG................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................GTTTGGTTCCGTCCAGTTCGT.................. 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................GTTCGTTTCTCTTCGGGGT..... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................ACCGCCAGAGAGGGCTACA....................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCAACTCCTGTTCGGATCA............................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................GAGTTGTGGTATCTATGGC..................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ACGGGGCCTATCGCTGCG............................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................TAAATACCACCACCAACGC......................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dm3 chr3L:7017249-7017414 + CCAGAAGCCAGAA--CA-----GAAACGAACTGAACCGAACCGAACAG------AAGTTGCAGGACGATGGCGTAG---GTG------G---------------------------------------------------------------T---GGT-A-TCTCAATTTTGATGGCATAGATAGCA-----------------------------------------CAACTTTTAG---------CCGTCTCTT-GCGGTTC--TGACGCTGCGAT---AGGCAA---CGTAAA-GTTTTC-G-----------------------------------------------CT-TCT-T-----------GAACT
droSim2 3l:6878916-6879087 + CCAGAAGCCAGAA--CACaaccgaaccgaactgaaccgaaccgaacag------aaGTTGCAGGACGATGGCGTAG---GTG------G---------------------------------------------------------------T---GGT-A-TCTCACTTTTGATGGCATAGATAGCA-----------------------------------------CAACTTTTAG--------ACCGACTCTT-GCGGTTC--TGGCGCTGCGAT---AGGCAA---CGCAAA-GTTTTC-G-----------------------------------------------CT-TCT-T-----------GAACT
droSec2 scaffold_2:6944509-6944680 + CCAGAAGCCAGAA--CACAACCGAACCGAACTGAACCGAACCGAACAG------AAGTTGCAGAACGATGGCGTAG---GTG------G---------------------------------------------------------------T---GGT-A-TCTCACTTTTGATGGCATAGATAGCA-----------------------------------------CAACTTTTGG--------ACCGACTCTT-GCGGTTC--TGACGCTGCGAT---AGGCAA---CGCAAA-GTTTTC-G-----------------------------------------------CT-TCT-T-----------GAACT
droYak3 3L:7601849-7602028 + CCACAAGCCAGAAGCCAGAACCGAACCAAACCAAACTGAAGAGAACAG------AAGTGGCAGGACGATGGTGTAG---GTGTAGTTGG---------------------------------------------------------------T---GGT-A-TCTCACTTTTGATGGCATAGATAGCA-----------------------------------------GAACTTTTAG---------CCGACTCTT-GCGGTTT--TGACGCTGCGAT---AGGCAG---CGCAAAAGTTTGC-G-----------------------------------------------CT-TCT-T-----------GAACT
droEre2 scaffold_4784:4341848-4341996 - CCAGAAGCCAGAA--CA-------------------------GAGCAA------AAGTTGCAGAACGATGGTCTGG---GTG------G---------------------------------------------------------------TGTAGGT-A-TCTCACTTTTGATGGCATGGATAGCG-----------------------------------------CAACTTTTAG---------CCGACTCTT-GCGGTTT--CGACGCTGCGAT---AGGCAG---CGGAAA-GTTTTC-G-----------------------------------------------CT-CCT-T-----------GAACT
droEug1 scf7180000409466:5168634-5168766 + CCA--------------------------------------------GAAGTTCGA------GAACGTTG---------GTG----------------------------------------------------------------------G---GGT-A-GCTCAATTTTGATGGCATAGATAGGG-----------------------------------------CAACTTTTGCC--TTTTGGGTGACTCTTGGCGGTTT--TGACGGTGCGAT---AGGCACAACAACAAA-GTTTTT-G-----------------------------------------------CC-TTT-T-----------GAACT
droBia1 scf7180000302193:5912465-5912580 + CCA--------------------------------------------GAAGTTCGA------GAGCGG------------------------------------------------------------------------------------C---GGT-A-GTTCAATTTTGATGGCATAGATAGCG-----------------------------------------CAACTTTTGC---------CCGACTCCT-GCGGTCT--CGACGCTGCGAT---AGGCAC---ATCCAA-GTTTT--G-----------------------------------------------CC-TTT-T-----------GAACT
droTak1 scf7180000415773:697972-698092 - CCA--------------------------------------------GAAGTTCGA------GGACGG------------------------------------------------------------------------------------T---GGT-A-GTTCAATTTTGATGGCATAGATAGCG-----------------------------------------CAACTTTTGC---------CCGACTCTT-GCGGTTTCTCGACGCTGCGAT---AGGCAC---AGCAAA-GTTTTC-G-----------------------------------------------CCCTTTTC-----------GAACT
droEle1 scf7180000491255:436052-436164 - CCA--------------------------------------------GAAGTTCGA------GGACGT------------------------------------------------------------------------------------T---GCT-A-GTTCAATTTTGATGGCATAGATAGCG-----------------------------------------CAACTTTTGT---------CCGACTTTT-GCGGTTT--CGACGCTGCGAT---AGGC------GCAAA-GTTTT--G-----------------------------------------------CC-TTT-C-----------AAACT
droRho1 scf7180000779419:6708-6826 - G-------------------------------------------GCAGAAGTTCG------AGGACGG------------------------------------------------------------------------------------T---GGT-A-GTTCAATTTCGATGCCATAGATAGCG-----------------------------------------CAACTTTGGC---------CCGACTCCT-GCGGTCT--TGACGCTGCGAT---AGGCGG--CAACAAA-GTTTT--G-----------------------------------------------CC-TCT-G-----------GAACT
droFic1 scf7180000453839:981540-981658 + CCA--------------------------------------------GGAGTTCGA------GGACGACGG---------------------------------------------------------------------------------C---AGT-A-GTTCAATTTTGATGGCAAAGATAGCG-----------------------------------------CAACTTTGGC---------CCAACTCTT-GCGGTTT--CGACAGGGAGAT---AGGCAA---AGCAAA-GTTTC--G-----------------------------------------------CC-TTT-T-----------GAACT
droKik1 scf7180000302391:238402-238528 - CCA--------------------------------------------GAAGTTCGAGTTCGAGGACGG------------------------------------------------------------------------------------T---GGAAAGTCGCATTTTCGATGGCATAGATAGCG-----------------------------------------AAACTTTTCC---------GCGACTTGT-GCGGTTT--CGTCAGTGAGATAGTAGGCAC---AACAAA-GTTTC--C-----------------------------------------------TT-CTC-T-----------GAACT
droAna3 scaffold_13337:1547955-1548135 + CCA--------------------------------------------GAAGTTGGAGTTG------------------------------CCTTTGTTTGTGCCCCTCCTGCCG-CCCACTG----------------------CTGCCTCAT---GGT-A-GTTCCAATTTGATGGCATAGATACCGCCCCGAAAGTCG---AA---------------------AGGCAACTTTTCGCCAG--CAACTGACTTCT-GCGGCTT--CGACAGCCAGAT---AGGCAA---AACAAA-GTTTCG-------------------------------------------------CCTTTT-T--------GCCAAACT
droBip1 scf7180000396544:546136-546315 - CCA--------------------------------------------GAAGTTGGAGTTGTGC--------------------------TCCATTGTTTGTGCCCCTTCTGCTGTCCCACTG----------------------CTGCCTCAT---GGT-A-GTTCCAATTTGATGGCATAGATACCGCCTGGAAAGTCG---AA---------------------AGGCAACTTTTCT--------CCTGACTTTT-GCGGCTT--CGACAGCCAGAT---AGGCAA---AACAAA-GTTTCG-------------------------------------------------TCTTTT-T--------GCCAAACT
dp5 XR_group6:2424078-2424320 - CCG--------------------------------------------AAAGCC-AAGTTCGGGGACGATGC-----GCC----------TCTTTTGTTTGCGGTGACTGTGGCGTGGCCCTGGGCCCTGGGCCCGACCCCACCGC-------C---AGTAA-GTCCAACGTCGATGGTATAGATAGGG------AGATGGCAGAGTCCCGGCTTTGGGCTCGGGGGTGGCAACTTTTGC---------ATGACTTTT-GCGGTTC--TGACAGTGTGAT---AGGCAC---AACAAA-GTTTTG-G-CAGAT-TCCCAGAGCAGACCGCCC----------------------CC-TCT-T-----------AAACT
droPer2 scaffold_9:717083-717325 - CCG--------------------------------------------AAAGCC-AAGTTCGGGGACGATGC-----GCC----------TCTTTTGTTTGCGGTGACTGTGGCGTGGCCCTGGGCCCTGGGCCCGACCCCACCGC-------C--AGTC-A-GTCCAACGTCGATGGTATAGATAGGG------AGATGGCAGAGACCCGGCTTTGGGCTCGGGGGTGGCAACTTTTGC---------ATGACTTTT-GCGGTTC--TGACAGTGTGAT---AGGCAC---AAAAAA-GTTTTG-G-CAGAT-TCCCAGAGCAGACCGCCC----------------------CC-TCT-T-----------AAACT
droVir3 scaffold_13049:7470755-7470898 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGGCATAGATAGCG-----------------------------------------TAACTTTGCAGAAGATGCGCTGACTTCT-GCGGTTT---G--CCTGCGAT---AGGCAC---AACAAA-GTTTTT-GTCAGTTCTCCCAGTTTT-CTCGCCCCCCCCTCTGCAAACTCTGGCTCC-------ACGTTCGAACTTAACT
droMoj3 scaffold_6680:5720674-5720806 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGGCATAGATAGCG-----------------------------------------CAACTTTGCAGAAGCTGCGCTGACTTTT-GCGGCTT--G---GCTGTGAT---AGGCAC---AACAAA-GTTTTCTGTCAGCTGT-------------GGCCCGCCCTGCGC-----CTGGCCGCT-CTT-CGAGTTCGAACCAAACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCAGAAGCCAGAA--CACaaccgaaccgaactgaaccgaaccgaacag------aaGTTGCAGGACGATGGCGTAG---GTG------G---------------------------------------------------------------T---GGT-A-TCTCACTTTTGATGGCATAGATAGCA-----------------------------------------CAACTTTTAG--------ACCGACTCTT-GCGGTTC--TGGCGCTGCGAT---AGGCAA---CGCAAA-GTTTTC-G-----------------------------------------------CT-TCT-T-----------GAACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis
..................AACCGAACCGAACTGAACCGAACC...............................................................................................................................................................................................................................................................................................................................................2430.33110000000000000
......................GAACCGAACTGAACCGAAC................................................................................................................................................................................................................................................................................................................................................1960.33202000000000000
droSec2
CCAGAAGCCAGAA--CACAACCGAACCGAACTGAACCGAACCGAACAG------AAGTTGCAGAACGATGGCGTAG---GTG------G---------------------------------------------------------------T---GGT-A-TCTCACTTTTGATGGCATAGATAGCA-----------------------------------------CAACTTTTGG--------ACCGACTCTT-GCGGTTC--TGACGCTGCGAT---AGGCAA---CGCAAA-GTTTTC-G-----------------------------------------------CT-TCT-T-----------GAACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CCACAAGCCAGAAGCCAGAACCGAACCAAACCAAACTGAAGAGAACAG------AAGTGGCAGGACGATGGTGTAG---GTGTAGTTGG---------------------------------------------------------------T---GGT-A-TCTCACTTTTGATGGCATAGATAGCA-----------------------------------------GAACTTTTAG---------CCGACTCTT-GCGGTTT--TGACGCTGCGAT---AGGCAG---CGCAAAAGTTTGC-G-----------------------------------------------CT-TCT-T-----------GAACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body
No Reads
droEre2
CCAGAAGCCAGAA--CA-------------------------GAGCAA------AAGTTGCAGAACGATGGTCTGG---GTG------G---------------------------------------------------------------TGTAGGT-A-TCTCACTTTTGATGGCATGGATAGCG-----------------------------------------CAACTTTTAG---------CCGACTCTT-GCGGTTT--CGACGCTGCGAT---AGGCAG---CGGAAA-GTTTTC-G-----------------------------------------------CT-CCT-T-----------GAACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		M060
Embryo		V040
Embryo		V107
Male-body		V108
Head
No Reads
droEug1
CCA--------------------------------------------GAAGTTCGA------GAACGTTG---------GTG----------------------------------------------------------------------G---GGT-A-GCTCAATTTTGATGGCATAGATAGGG-----------------------------------------CAACTTTTGCC--TTTTGGGTGACTCTTGGCGGTTT--TGACGGTGCGAT---AGGCACAACAACAAA-GTTTTT-G-----------------------------------------------CC-TTT-T-----------GAACTSizeHit CountTotal NormTotal
No Reads
droBia1
CCA--------------------------------------------GAAGTTCGA------GAGCGG------------------------------------------------------------------------------------C---GGT-A-GTTCAATTTTGATGGCATAGATAGCG-----------------------------------------CAACTTTTGC---------CCGACTCCT-GCGGTCT--CGACGCTGCGAT---AGGCAC---ATCCAA-GTTTT--G-----------------------------------------------CC-TTT-T-----------GAACTSizeHit CountTotal NormTotal
No Reads
droTak1
CCA--------------------------------------------GAAGTTCGA------GGACGG------------------------------------------------------------------------------------T---GGT-A-GTTCAATTTTGATGGCATAGATAGCG-----------------------------------------CAACTTTTGC---------CCGACTCTT-GCGGTTTCTCGACGCTGCGAT---AGGCAC---AGCAAA-GTTTTC-G-----------------------------------------------CCCTTTTC-----------GAACTSizeHit CountTotal NormTotal
No Reads
droEle1
CCA--------------------------------------------GAAGTTCGA------GGACGT------------------------------------------------------------------------------------T---GCT-A-GTTCAATTTTGATGGCATAGATAGCG-----------------------------------------CAACTTTTGT---------CCGACTTTT-GCGGTTT--CGACGCTGCGAT---AGGC------GCAAA-GTTTT--G-----------------------------------------------CC-TTT-C-----------AAACTSizeHit CountTotal NormTotal
No Reads
droRho1
G-------------------------------------------GCAGAAGTTCG------AGGACGG------------------------------------------------------------------------------------T---GGT-A-GTTCAATTTCGATGCCATAGATAGCG-----------------------------------------CAACTTTGGC---------CCGACTCCT-GCGGTCT--TGACGCTGCGAT---AGGCGG--CAACAAA-GTTTT--G-----------------------------------------------CC-TCT-G-----------GAACTSizeHit CountTotal NormTotal
No Reads
droFic1
CCA--------------------------------------------GGAGTTCGA------GGACGACGG---------------------------------------------------------------------------------C---AGT-A-GTTCAATTTTGATGGCAAAGATAGCG-----------------------------------------CAACTTTGGC---------CCAACTCTT-GCGGTTT--CGACAGGGAGAT---AGGCAA---AGCAAA-GTTTC--G-----------------------------------------------CC-TTT-T-----------GAACTSizeHit CountTotal NormTotal
No Reads
droKik1
CCA--------------------------------------------GAAGTTCGAGTTCGAGGACGG------------------------------------------------------------------------------------T---GGAAAGTCGCATTTTCGATGGCATAGATAGCG-----------------------------------------AAACTTTTCC---------GCGACTTGT-GCGGTTT--CGTCAGTGAGATAGTAGGCAC---AACAAA-GTTTC--C-----------------------------------------------TT-CTC-T-----------GAACTSizeHit CountTotal NormTotal
No Reads
droAna3
CCA--------------------------------------------GAAGTTGGAGTTG------------------------------CCTTTGTTTGTGCCCCTCCTGCCG-CCCACTG----------------------CTGCCTCAT---GGT-A-GTTCCAATTTGATGGCATAGATACCGCCCCGAAAGTCG---AA---------------------AGGCAACTTTTCGCCAG--CAACTGACTTCT-GCGGCTT--CGACAGCCAGAT---AGGCAA---AACAAA-GTTTCG-------------------------------------------------CCTTTT-T--------GCCAAACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CCA--------------------------------------------GAAGTTGGAGTTGTGC--------------------------TCCATTGTTTGTGCCCCTTCTGCTGTCCCACTG----------------------CTGCCTCAT---GGT-A-GTTCCAATTTGATGGCATAGATACCGCCTGGAAAGTCG---AA---------------------AGGCAACTTTTCT--------CCTGACTTTT-GCGGCTT--CGACAGCCAGAT---AGGCAA---AACAAA-GTTTCG-------------------------------------------------TCTTTT-T--------GCCAAACTSizeHit CountTotal NormTotal
No Reads
dp5
CCG--------------------------------------------AAAGCC-AAGTTCGGGGACGATGC-----GCC----------TCTTTTGTTTGCGGTGACTGTGGCGTGGCCCTGGGCCCTGGGCCCGACCCCACCGC-------C---AGTAA-GTCCAACGTCGATGGTATAGATAGGG------AGATGGCAGAGTCCCGGCTTTGGGCTCGGGGGTGGCAACTTTTGC---------ATGACTTTT-GCGGTTC--TGACAGTGTGAT---AGGCAC---AACAAA-GTTTTG-G-CAGAT-TCCCAGAGCAGACCGCCC----------------------CC-TCT-T-----------AAACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CCG--------------------------------------------AAAGCC-AAGTTCGGGGACGATGC-----GCC----------TCTTTTGTTTGCGGTGACTGTGGCGTGGCCCTGGGCCCTGGGCCCGACCCCACCGC-------C--AGTC-A-GTCCAACGTCGATGGTATAGATAGGG------AGATGGCAGAGACCCGGCTTTGGGCTCGGGGGTGGCAACTTTTGC---------ATGACTTTT-GCGGTTC--TGACAGTGTGAT---AGGCAC---AAAAAA-GTTTTG-G-CAGAT-TCCCAGAGCAGACCGCCC----------------------CC-TCT-T-----------AAACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGGCATAGATAGCG-----------------------------------------TAACTTTGCAGAAGATGCGCTGACTTCT-GCGGTTT---G--CCTGCGAT---AGGCAC---AACAAA-GTTTTT-GTCAGTTCTCCCAGTTTT-CTCGCCCCCCCCTCTGCAAACTCTGGCTCC-------ACGTTCGAACTTAACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
No Reads
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATGGCATAGATAGCG-----------------------------------------CAACTTTGCAGAAGCTGCGCTGACTTTT-GCGGCTT--G---GCTGTGAT---AGGCAC---AACAAA-GTTTTCTGTCAGCTGT-------------GGCCCGCCCTGCGC-----CTGGCCGCT-CTT-CGAGTTCGAACCAAACTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		V060
Head		V110
Male-body
No Reads

Generated: 07/30/2014 at 06:11 PM