ID:

dme-mir-929-as

 Coordinate:

chr3R:121105-121161 -

 Confidence:

Known Ortholog

 Type:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.0

Sense Strand Reads

AGCTAACACATTTTTAAGTGCTCCTCTGTTGTGTCGCTCCTTTGCAGCTCAATCTGACTCCGTTAGGGAGTCGCTCATTAAAGGACTCCCTACTAGAGTCAATTTGAGCTCCACCAGGACTGGTTCCGCCATGTCAGGGCATGGATTGCATACATGG
***********************************..((((.((.(((((((..((((((...(((((((((.((......)))))))))))...))))))..))))))).))..))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M005
ML-DmD32 cell		 V022
ML-DmD32 cell		 GSM609250
ML-DmD32 cell		 M006
ML-DmD32 		V085
CME W2 wing disc		 V144
OSC		 V091
fGS/OSS total  		 GSM609227
CMEW1 Cl.8+ cell		 V132
ML-DmD32 		GSM609222
ML-DmBG1-C1		 V0632
wt ovary AGO1-IP, reseq
AGO1
 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1
 V080
Starvation, female head
 GSM609224
female, one day
 GSM609220
ML-DmD21 cell		 M004
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 M003
dcr-2[G31R] male total RNA  
 GSM385748
OSS_s6		 SRR029633
total small RNAs from hen1 homozygous flies
 SRR341117
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 GSM399100
Kc167 cell		 GSM609219
GM2 cell		 V034
ML-DmD16c3 cell		 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2
 GSM385744
OSS_s2		 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1
 V078
Desiccation, female head
 V086
female body, aged
 GSM609234
CS  male total RNA  
 V077
cold, female head
 V079
Oxidation, female head
 GSM385821
OSS_s7		 V036
ML-DmD20c5 cell		 SRR032094
ago2 knockdown
 GSM628271
r2d2[1] ovary total RNA  
 M029
OSC cells (nuclear)
 V0642
ago2 ovary, AGO1-IP, reseq
AGO1
 V073
mbn2 		GSM609230
CS,ovary,AGO1IP
AGO1
 GSM467730
Dmel_r2d2_sRNAseq
 M035
S2-R+ cells, Ago1-IP, dsGFP
AGO1
 GSM286605
2-6h #1 (8)
 GSM322219
2-4day pupae #1
 SRR014276
Ovary_rep1_NA(fem)_x_Har(male)_F1
 SRR060645
yw67c23(2)_testes_total
 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 GSM609235
CMEL1		 V023
Dcr2 female head
 GSM609226
CMEW1 Cl.8+ cell		 V031
GM2 cell		 GSM628272
ago2[414] ovary total RNA
 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1
 V096
loqsKO/f00791 ovary
 V128
S3 		V133
Sg4 		V145
S2-DRSC		 V146
S1 cell		 V148
mbn2 		GSM385822
OSS_s8		 T004
OSC
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1
 SRR029031
loqs-ORF knockdown
 SRR029608
total small RNAs from hen1 heterozygous flies
 SRR065153
Piwi bound piRNAs from tj GAL4 > RNAi-armi ovaries
 GSM609251
aged female head
 V015
DreRFHV148h
 GSM609248
ML-DmD9 cell		 V074
S3		 GSM609238
embryo 14-24hr
 GSM609237
ago2[414] ovary total RNA
 SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 SRR010959
Ago3 IP in heterozygotes
AGO3
 V126
CME L1 		GSM609225
ML-DmBG3-C2		 SRR001349
heterozygous_dcr-2_untreated
 SRR014273
Ovary_rep1_Har_P
 SRR097866
Drosophila S2-NP cells
 V136
Male aged body
 M031
OSC cells (whole cell)
 SRR031703
Total small RNAs from r2d2 homozygous flies
 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 GSM609217
MLDmD20c5		 GSM399101
kc167 cell		 GSM371638
S2-NP		 V137
Male aged head
 SRR010953
Aub heterozygotes, oxidized
 GSM609231
ago2[414], ovary, AGO1IP
AGO1
 GSM379057
Krimp Mutant
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1
 SRR001347
ago2_untreated
 V032
S1 cell		 GSM609232
r2d2[1] ovary total RNA  
 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
..................................................AATCTGACTCCGTTAGGGAGTC..................................................................................... 22 0 1 247.00 247 216 4 21 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGT...................................................................................... 21 0 1 242.00 242 178 42 9 1 1 0 0 2 1 0 0 0 0 0 2 0 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAG....................................................................................... 20 0 1 103.00 103 83 1 10 2 5 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCCCTACTAGAGTCAATTTG................................................... 21 0 1 42.00 42 28 0 2 6 0 0 0 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGCC..................................................................................... 22 1 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGG...................................................................................... 21 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................GTCGCTCCTTTGCAGCTC........................................................................................................... 18 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGAATCAATGTGAGCTCCAA........................................... 20 3 8 4.75 38 0 0 0 0 0 9 1 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 8 0 0 0 0 0 0 0 7 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGA...................................................................................... 21 1 1 4.00 4 3 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTCGGGAGT...................................................................................... 21 1 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGG......................................................................................... 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCAGTAGGGAGT...................................................................................... 21 2 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGTCT.................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGAATCAATGTGAGCTCCACT.......................................... 21 3 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AAAGAATCAATTTGAGCTCCA............................................ 21 3 1 3.00 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAGAATCAATGTGAGCTCCA............................................ 20 3 5 3.00 15 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGAATCAATGTGAGCTCCA............................................ 19 2 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAT....................................................................................... 20 1 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAGCTGACTCCGTTAGGGAGT...................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGC...................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTCGGGAGTC..................................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGCTAGGGAGTC..................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGTAGT...................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTATGGAGT...................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGGC..................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTACGGAGT...................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGAA........................................................................................ 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGATT...................................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AACCTGACTCCAGTAGGGAGT...................................................................................... 21 3 2 2.00 4 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGGGAGTCA.................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCAAGTAGGGAGT...................................................................................... 21 3 3 1.33 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAGAATCAATGTGAGCTCCAC........................................... 21 3 3 1.33 4 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTAGGGAGTCGGTCATAAAAG.......................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................GAGCTCCATCAGTACTGGGT................................ 20 3 2 1.00 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCTGTTAGGGAG....................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCCCTAATAGAGTCAGTTTG................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCTGGTAGGGAGT...................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................TTTGAACTCCCCCAGGACGGG.................................. 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCAGACACCGTTAGTGAGTC..................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTTGGG......................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTTACTCGGTTAGTGAGT...................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGAGAGAATCTGAGCTCCACC.......................................... 21 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCTATTAGGGAGTC..................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTTGGGAGT...................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCCCTACTAGAGTCAATTTGAA................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................AGTGCTCCTCTGATGTCT........................................................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TGAGCTCTAACAGGACTG................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTTAGTGAGT...................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................CTGTTGTGTCGCTCTTTT.................................................................................................................. 18 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCCGACTCCGTTAGGGAGT...................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCCGTCAGGGAGTC..................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.....................TCCGTCGTTGTGTCGCTCCT.................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............TTTAAGTCCTCTTCTGTTGTTT........................................................................................................................... 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................CATGTGAGGGCATGGATAGTA....... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................CCTTCGCAGCTCCAACTGAC................................................................................................... 20 3 13 0.23 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTGAGGGGATGGATTGGAT...... 20 3 9 0.22 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAACTGACTCCATTAGGGAGC...................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AATTGACCTCCACCAGGGCT.................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGACAGGGCATGGTTTGAATA..... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GAGTCGCGTATTAAAGGAAT...................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................AGCGTCAATTTGAACTTCACC.......................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGACAGGGCATGGATTGTCT...... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGAATCAATTTGAGCTCCAAT.......................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGGATGGAGTGGAT...... 20 3 10 0.20 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAGAATCAATGTGAGCTCC............................................. 19 3 15 0.20 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GTATCGCTCATTAAAGGAGT...................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................GAATCGGTCATTAAAGGAGTC..................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CTCTCCTGTTGTGTCGCTCTTT................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AAGCTGACTCCAGTAGGGAGT...................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGCACTGATTGTAT...... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................ATTCCACCAGGAGTGGTTCC.............................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGCAAGGTTTGGAT...... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................ACTCCGTTGGGGAGTGGCCC................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................CATCACAGTCTGACTCCGTT............................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGTCATGGTTTGGAT...... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCAGCCGTTGTGTCGCTCCT.................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGACAGGGGATGGATTGGAT...... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCATGGCACGGATTGTAT...... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TCTACTGTTGTGTCGCTC...................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGTCATGGATTGTAA...... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................CGTGAGGGAGTCGATCCT............................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAACACAATTTTAAATGCTGCT.................................................................................................................................... 22 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GACTCCGGTAAGGACTCGC................................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGCCTGGTTTGTAT...... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGCATGGATTATAA...... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................CTTTGCTGCTCGATCTGCCTC................................................................................................. 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................AAAATGACTCCATTAGGGAGT...................................................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCTGGGCATGGTTTGTAT...... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGAATCAATGTGAGCTCCAT........................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTTTCTCCGTTCGGGAGT...................................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TTAGGGAGACGGTCATTTA............................................................................ 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGCAGGGATTGTGT...... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................AGAGAATCAATTTGAGCTCC............................................. 20 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATTTGACTCAATTAGGGAGT...................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGGACGGATTGGA....... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGCTTGGATTGGAA...... 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...TAACACATTTTTATGGGCT....................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................TGAGGGAGTCGGTCATTTA............................................................................ 19 3 17 0.12 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................ATTTGAGCAGCACCAGCACTG................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGCATGGTTTGGAA...... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTCAGGGGATGGTTTGGAT...... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................CTCCCTACCGGAGTCAACT..................................................... 19 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................CAGCACAATCTGAGTTCGTT............................................................................................. 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGAGAGGGCATGGATTGCAAA..... 21 3 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CTAGGGAGTCGCTCATATA............................................................................ 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................GAGAATCAATTTGAGCTC.............................................. 18 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AATCTGACTCATTTATGGAG....................................................................................... 20 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................TATCAGAGTCAATTTGAGG................................................ 19 3 20 0.10 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................AGTAAATTTGAACTGCACCAG........................................ 21 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TGTCAGGGGATGGATTGTAA...... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GCATGAATGGACTCCCTAC................................................................ 19 3 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CCATGTATGCAATCCATGCCCTGACATGGCGGAACCAGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGACACAACAGAGGAGCACTTAAAAATGTGTTAGCT
************************************..((((..((.(((((((..((((((...(((((((((((......)).)))))))))...))))))..))))))).)).))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V137
Male aged head
 M003
dcr-2[G31R] male total RNA  
 M004
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 V080
Starvation, female head
 V138
Male cold body
 V136
Male aged body
 V078
Desiccation, female head
 V077
cold, female head
 V079
Oxidation, female head
 V140
Dessication_female_body
 V092
dcr-2[G31R] male total RNA  
 V141
Heat_female_body
 V093
loqs-KO, 40A; loqs-PB rescue/TM3  male total RNA
 V142
Oxidation_female_body
 V128
S3 		GSM609234
CS  male total RNA  
 GSM399100
Kc167 cell		 V139
Cold_female_body
 GSM609251
aged female head
 V146
S1 cell		 V023
Dcr2 female head
 GSM609238
embryo 14-24hr
 V131
ML-DmD16-c3 		GSM609223
male, one day
 GSM609247
heat female head
 SRR029633
total small RNAs from hen1 homozygous flies
 V133
Sg4 		GSM399101
kc167 cell		 SRR032152
Ago1-associated small RNAs from Oregon R
AGO1		 SRR029608
total small RNAs from hen1 heterozygous flies
 V130
ML-DmBG3-c2 		V086
female body, aged
 V126
CME L1 		V074
S3		 SRR014278
Ovary_rep1_w1118(fem)_x_Har(male)_F1
 GSM609224
female, one day
 SRR031697
Total small RNAs from dcr-2 heterozygous flies
 M006
ML-DmD32 		SRR031692
Total small RNAs from Oregon R
 SRR031703
Total small RNAs from r2d2 homozygous flies
 V015
DreRFHV148h
 V012
Dcr2 male (Katsutomo, whole fly?)
 SRR031699
Total small RNAs from dcr-2 homozygous flies
 GSM609239
IR- 2-18hr
 GSM313163
dcr-2 heterozygous, untreated
 SRR298537
strain: vret148-60/vret148-60genotype/variation: Vret Mutant
 SRX247212
AGO1-IP from S2-R+, FLAG-HA-AGO2
AGO1		 GSM313162
dcr-2 homozygous, untreated
 V091
fGS/OSS total  		 M048
Katsutomo GW182 protein IP
 SRR031701
Total small RNAs from r2d2 heterozygous flies
 GSE24544
dcr-2[L811fsX] ovary total RNA
 V0632
wt ovary AGO1-IP, reseq
AGO1		 SRR031696
Ago1-associated small RNAs from Oregon R
AGO1		 GSM609225
ML-DmBG3-C2		 GSM609240
IR+ 2-18hr
 GSM322543
male head #1
 M005
ML-DmD32 cell		 SRR031698
2'-O-methylated small RNAs from dcr-2 heterozygous flies
 V032
S1 cell		 GSE24545
CS ovary total RNA
 V034
ML-DmD16c3 cell		 SRR298711
strain: egg1473/ Df(2R)Dll-Mpgenotype/variation: dSETDB1 Mutant
 V132
ML-DmD32 		SRX247213
FLAG-IP from S2-R+, FLAG-HA-AGO2
AGO2		 SRR298712
strain: bam(delta)86/bam(delta)86genotype/variation: Bam Mutant
 GSM313161
dcr-2 heterozygous, oxidized
 V134
ML-DmD8 		SRR001338
IR_non-beta-eliminated
 V006
r2d2 female: possibly heterozygous
 SRR031693
2'-O-methylated small RNAs from Oregon R
 SRR031702
2'-O-methylated small RNAs from r2d2 heterozygous flies
 V144
OSC		 V0652
dcr2 ovary, AGO1-IP, reseq
AGO1		 SRR351332
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: control wild type (w, 5905)
 GSM322533
female head #1
 SRR001349
heterozygous_dcr-2_untreated
 SRR001347
ago2_untreated
 V129
ML-DmBG1-c1		 GSM609218
Sg4		 SRR001664
homozygous_dcr-2_untreated
 V147
1182-4H cell		 GSM628271
r2d2[1] ovary total RNA  
 SRR031694
2'-O-methylated small RNAs from Oregon R
 GSM628272
ago2[414] ovary total RNA
 V125
ML-DmD9		 V0642
ago2 ovary, AGO1-IP, reseq
AGO1		 GSM609235
CMEL1		 GSM312995
WT, oxidized
 SRR351333
age: 2-3dgender: male:female = 1:1tissue: whole flygenotype: nbr[f02257]
 V0662
r2d2 ovary, AGO1-IP, reseq
AGO1		 T004
OSC
 V008
S2-DRSC		 SRR001339
WT_females_non-beta-eliminated
 GSM609230
CS,ovary,AGO1IP
AGO1		 M035
S2-R+ cells, Ago1-IP, dsGFP
AGO1		 V127
G2		 SRR060652
hs-Penelope_testes_total
 M038
S2-R+ cells, Ago1-IP, dsR2D2
AGO1		 GSM609217
MLDmD20c5		 M037
S2-R+ cells, Ago1-IP, dsDcr2
AGO1		 SRR031700
2'-O-methylated small RNAs from dcr-2 homozygous flies
 SRR317117
genotype: zuc_hm27/zuc_cd761stage: from 5-6 days old flies
 GSM609220
ML-DmD21 cell		 SRR001345
ago2_non-beta-eliminated
 GSM240749
female head
 SRR298536
strain: vret148-60/TM6genotype/variation: Vret Heterozygote
 GSM609222
ML-DmBG1-C1		 SRR031704
2'-O-methylated small RNAs from r2d2 homozygous flies
 V022
ML-DmD32 cell		 GSM313160
dcr-2 homozygous, oxidized
 SRR001341
WT_males_non-beta-eliminated
 GSM609229
embryo 2-6hr
 GSM609237
ago2[414] ovary total RNA
 GSM343832
S2R+ cell		 SRR060645
yw67c23(2)_testes_total
 GSM379059
Piwi Mutant
 GSM609232
r2d2[1] ovary total RNA  
 V148
mbn2 		GSM286601
male head
 SRR060643
A2_testes_total
 SRR317113
genotype: CG47711-delta1/CG4771-delta1stage: from 5-6 days old flies
 V145
S2-DRSC		 GSM609236
dcr-2[L811fsX], ovary, AGO1IP
AGO1		 V096
loqsKO/f00791 ovary
 M039
S2-R+ cells, Ago1-IP, dsAgo2
AGO1		 SRR060650
A1_testes_total
 GSM280087
S2cell (AGO2IP)
AGO2		 SRR065801
zuc_het(H-Y)_ovaries
 GSM343833
S2R+ cell		 GSM399107
male body #2
 GSM609250
ML-DmD32 cell		 GSM379065
Zuc Heterozygote
 SRR001348
ago2_oxidized
 SRR014268
Embryo_0-2hrs_rep1_HAR_0_2hr_Emb
 SRR001343
dcr-2_non-beta-eliminated
 SRR097866
Drosophila S2-NP cells
 V073
mbn2 		GSM609249
ML-DmD21 cell		 GSM360262
0-2d pupae
 V036
ML-DmD20c5 cell		 GSM609219
GM2 cell		 GSM180328
adult heads (female heads, male heads)
 GSM609231
ago2[414], ovary, AGO1IP
AGO1		 GSM379055
Flam Mutant
 M036
S2-R+ cells, Ago1-IP, dsDcr1
AGO1		 GSM379051
Armi Mutant
 GSM379064
Vasa Mutant
 GSM360260
0-1d Pupae (w)
 SRR097865
Drosophila S2-NP cells
 SRR001344
dcr-2_beta-eliminated
 SRR060644
A2_ovaries_total
 GSM609233
r2d2[1], ovary, AGO1IP
AGO1		 SRR014277
Ovary_rep1_NA_P
 GSM379057
Krimp Mutant
 SRR014276
Ovary_rep1_NA(fem)_x_Har(male)_F1
 SRR014275
Ovary_rep1_LK_P
 GSM609221
1182-4H cell		 GSM313164
ago2 homozygous, oxidized (technical replicate #1)
 SRR014274
Ovary_rep1_LK(fem)_x_Har(male)_F1
 GSM609227
CMEW1 Cl.8+ cell		 SRR060646
yw67c23(2)_ovaries_total
 GSM313165
ago2 homozygous, oxidized (technical replicate #2)
 SRR065800
zuc_H-Y_ovaries
 SRR097867
Drosophila S2-NP cells
 SRR032092
mock oxidized
 GSM379050
Armi Heterozygote
 GSM280088
S2cell (AGO1IP)
AGO1		 GSM379061
Squ Heterozygote
 SRR014273
Ovary_rep1_Har_P
 SRR014270
Embryo_0-2hrs_rep1_NA_0_2hr_Emb
 SRR014279
Ovary_rep1_w1118(fem)_x_wK(male)_F1
 SRR014280
Ovary_rep1_w1118_P
 V085
CME W2 wing disc		 GSM399105
disk #2
 GSM379063
Vasa Heterozygote
 GSM286604
0-1h #3 (7)
 SRR001337
WT_females_beta-eliminated
 SRR014271
Embryo_0-2hrs_rep1_w1118_0_2hr_Emb
 GSM609226
CMEW1 Cl.8+ cell		 GSM399106
female body #2
 GSM371638
S2-NP		 GSM379052
Aub Heterozygote
 SRR317112
genotype: CG4771-delta1/TM3Sbstage: from 5-6 days old flies
 GSM609248
ML-DmD9 cell		 SRR014281
Ovary_rep1_wK(fem)_x_w1118(male)_F1
 GSM467729
Dmel_wt_sRNAseq
 GSM379058
Piwi Heterozygote
 GSM280084
loqs-/- ovaries (18-29nt)
 GSM379056
Krimp Heterozygote
 GSM379067
SpnE Mutant
 GSM322219
2-4day pupae #1
 SRR029033
lacZ knockdown
 GSM379060
SpnE Heterozygote
 SRR029028
untreated (mock)
 V003
dsDcr-1 (katsutomo RNA)
 V030
ML-DmD8 cell		 GSM275691
imaginal disc
 SRR014282
Ovary_rep1_wK_P
 SRR060653
hs-Penelope_ ovaries_total
 GSM379066
Zuc Mutant
 SRR060647
A2_ovaries_FLAG-Ago2
AGO2		 V031
GM2 cell		 SRR014269
Embryo_0-2hrs_rep1_LK_0_2hr_Emb
 SRR029032
r2d2 knockdown
 GSM364902
12-24hr embryo
 V014
DTT 8h
 GSM467730
Dmel_r2d2_sRNAseq
 GSM286602
male body
 GSM609242
s2+48 #2
 GSM379054
Flam Heterozygote
 GSM379062
Squ Mutant
 GSM467731
Dmel_loq_sRNAseq
 SRR001340
IR_beta-eliminated
 V135
CME W2 (wing disc line)		 GSM379053
Aub Mutant
 SRR029030
dcr-2 knockdown
 SRR032094
ago2 knockdown
 GSM322208
3rd instar #2
 SRR317115
genotype: fs(1)yb_72/fs(1)yb_4stage: from 5-6 days old flies
 T005
CME L1
V037
Felix sample +mirtrons
 GSM280083
dcr-2-/- ovaries (18-29nt)
 SRR032095
AGO1 IP dcr2 knockdown
AGO1		 SRR065804
Piwi-IP_zuc_H-Y_ovaries
 SRR317111
genotype: DF(3L)armi-delta1/DF(3L)armi-delta1Stage: from 5-6 days old flies
 GSM239050
fly heads, beta-eliminated
 SRR001346
ago2_beta-eliminated
 GSM280082
WT ovaries (18-29nt)
 GSM609244
KC+48 #2
 V038
Felix sample S2 only
 GSM239052
S2 cells, non beta-eliminated
 GSM385744
OSS_s2		 GSM239041
fly heads, non beta-eliminated
 GSM246084
D. melanogaster adult male heads 454
 GSM385748
OSS_s6		 GSM286603
female body
 SRR065802
Piwi-IP_zuc_mut_ovaries
 SRR341118
transfected with dsRNA targeting luciferasecell type: Schneider 2 (S2) cellsoxidation
 GSM322245
3rd instar #1
 SRR032096
AGO2 IP dcr2 knockdown
AGO2		 GSM180333
late embryo (12-24)
 M029
OSC cells (nuclear)
 M031
OSC cells (whole cell)
 GSM286605
2-6h #1 (8)
 GSM322338
2-4day pupae#2
 GSM360256
1st instar #1
 GSM609241
s2+48 #1
 SRR317114
genotype: fs(1)yb_72/Fm6 or fs(1)yb_4/Fm6stage: from 5-6 days old flies
 GSM385822
OSS_s8		 GSM360257
1st instar #2
 GSM272651
S2-48,+48, KC-48, +48 mix
 SRR032093
ago1 knockdown
 SRR065805
Piwi-IP_zuc_het(H-Y)_ovaries
 GSM180335
imaginal discs
 S6
0-1,2-6,6-10h embryo
 GSM180336
pupae: 0-1 day, 0-2 day, 2-4 day
 GSM280085
WT testes (18-24nt)
 GSM385821
OSS_s7		 GSM609243
KC+48 #1
 SRR014272
Embryo_0-2hrs_rep1_wK_0_2hr_Emb
 SRR060651
A2_ovaries_Ago3
AGO3		 SRR341115
transfected with dsRNA targeting nibblercell type: Schneider 2 (S2) cellsoxidation
 GSM180329
adult bodies (female bodies, male bodies)
 GSM286611
6-10h #2 (11)
 SRR001342
WT_males_beta-eliminated
 SRR029029
dcr-1 knockdown
 GSM361908
s2-48 Biological Replicate #2
 SRR317116
genotype: zuc_hm27/Cyo or zuc_cd761/Cyostage: from 5-6 days old flies
 GSM239051
S2 cells, beta-eliminated
AGO2		 GSM272653
KC -48 #1
 SRR010957
Aub IP in Ago3 trans-heterozygotes
 SRR029031
loqs-ORF knockdown
 SRR065807
Piwi-IP_squ_het_ovaries
 SRR317110
genotype: Df(3L)armi-delta1/TM3SbStage: from 5-6 days old flies
 GSM343287
Drosophila Toll 10b mutant embryos
 M030
OSC cells (cytoplasmic)
 GSM272652
S2 -48 Biological Replicate #1
....................................................AAATTGACTCTAGTAGGGAGT.................................................................................... 21 0 1 1395920.00 1395920 411255 205589 191295 42541 55566 53269 29618 28924 25428 37485 21846 29627 18410 24842 17288 14054 16247 16351 11944 12670 10595 3835 10889 6605 6135 711 6177 4777 1282 431 5645 3897 5086 2743 3600 3211 809 3432 249 391 2938 2590 598 444 652 2646 2067 547 1695 1744 276 2125 1441 406 1320 359 74 1062 767 1280 1472 1107 1094 1426 1369 1175 678 1536 41 716 465 233 979 628 196 33 10 11 665 405 15 602 485 249 410 481 337 313 221 141 277 81 241 242 237 228 363 276 226 273 201 110 103 242 116 8 210 125 16 187 88 125 92 127 192 157 139 130 180 4 117 69 174 103 103 79 100 100 83 88 6 59 83 2 79 34 120 77 72 2 59 88 1 69 59 62 66 30 2 73 34 59 48 52 44 39 50 41 26 34 28 47 19 24 44 41 36 32 41 39 29 42 34 37 0 24 3 13 38 18 1 23 26 11 30 32 1 8 18 11 16 1 29 8 18 14 18 0 14 22 12 29 11 14 10 0 16 1 0 0 9 8 0 1 16 12 5 7 0 9 4 7 4 12 3 6 2 6 5 0 2 4 1 1 0 0 0 10 3 0 8 0 0 0 1 1 0 0 4 0 0 0 5 4 0 0 0 0 2 0 1 5 3 0 0 2 4 0 1 0 1 1 1 0 1 0 0 0
....................................................AAATTGACTCTAGTAGGGAGTC................................................................................... 22 0 1 265815.00 265815 25601 61909 58443 10648 2189 2953 8079 6132 4945 2075 6762 1398 5866 1293 6039 3916 880 925 1545 689 889 6728 732 3108 1431 958 2163 1602 1112 882 614 558 729 1725 1536 1488 1670 481 563 564 596 631 1371 1926 1438 348 704 1258 661 114 382 461 655 401 514 1485 192 1008 325 452 592 504 408 160 146 404 294 101 122 215 159 115 39 248 611 40 20 37 85 293 29 103 185 97 185 49 158 114 86 274 122 249 56 10 111 57 51 54 34 48 34 33 182 22 23 4 70 53 37 19 31 5 120 65 18 15 61 50 20 9 22 83 11 44 60 9 38 32 48 40 6 64 37 5 50 3 7 20 44 8 34 9 5 23 25 12 27 47 10 8 7 28 13 15 16 36 18 24 13 21 17 17 7 35 4 23 16 15 7 13 20 10 18 8 2 9 0 1 0 15 3 5 13 20 6 12 0 21 10 12 12 0 0 12 8 4 8 1 4 5 10 1 8 8 5 3 3 0 1 0 5 7 0 3 1 1 0 0 0 0 9 2 6 0 2 4 0 1 6 1 4 2 1 3 2 1 1 0 1 0 0 0 0 0 5 1 0 0 0 2 0 0 2 0 1 0 0 0 0 0 2 0 0 0 1 0 0 2 2 0 0 0 0 1 1 0 0 0
.......................................................................................CTCCCTAACGGAGTCAGATTG................................................. 21 0 1 48935.00 48935 3201 3328 2371 8484 105 61 5083 4021 5618 71 330 49 211 63 63 345 216 40 1712 32 791 119 26 220 2007 366 13 227 1163 406 8 50 9 107 11 98 526 6 177 415 238 426 583 48 447 8 24 539 15 8 200 3 16 342 62 42 1376 66 22 24 1 58 2 5 3 0 19 1 48 166 12 10 4 9 5 592 58 37 2 26 34 4 1 7 3 1 6 54 6 9 7 19 59 16 2 23 1 0 21 5 18 21 5 8 22 179 3 0 29 4 18 7 2 0 2 0 1 1 0 101 1 0 0 2 0 22 1 11 0 4 41 4 1 12 2 11 0 2 4 14 4 0 73 1 0 6 0 1 12 0 10 0 4 0 1 0 0 2 6 0 8 0 4 0 2 0 1 3 0 0 1 0 0 1 17 0 24 2 0 5 21 3 0 1 1 0 37 0 1 0 1 18 0 0 0 0 2 5 0 0 1 0 1 0 0 7 0 12 10 6 0 0 13 1 0 0 5 0 3 1 1 2 0 0 0 0 0 2 0 7 0 2 3 3 3 2 4 0 0 4 0 1 1 2 2 0 1 5 0 0 0 4 0 0 2 4 3 3 1 3 0 0 0 2 0 0 0 1 0 0 0 1 0 0 0 0 1 0
....................................................AAATTGACTCTAGTAGGGAG..................................................................................... 20 0 1 45230.00 45230 4212 9613 9401 1631 909 741 1189 1148 1032 519 960 317 912 348 107 492 153 219 315 210 95 78 155 377 179 2168 37 177 528 436 63 242 47 69 195 225 217 26 286 541 86 118 154 34 175 185 88 138 32 16 315 102 127 176 106 20 83 89 128 260 64 112 143 10 7 99 106 8 207 26 44 240 6 37 73 13 20 23 8 2 16 8 26 20 18 1 7 6 17 33 15 36 9 31 17 45 2 22 37 9 43 39 17 5 25 5 4 8 41 1 36 15 1 11 0 40 13 11 2 2 36 17 0 8 4 9 21 3 7 1 8 9 3 2 1 16 0 2 2 0 4 2 2 1 5 3 3 2 0 6 5 1 3 5 3 1 4 0 9 2 4 0 5 0 0 0 1 0 4 2 1 0 4 0 1 1 0 6 0 0 0 3 0 2 2 0 0 0 0 1 0 1 0 1 2 1 0 1 2 0 0 0 1 1 0 1 1 0 1 0 0 1 0 2 0 1 0 0 0 1 2 1 1 0 1 3 1 0 1 0 1 0 0 0 1 0 0 0 3 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0
....................................................AAATTGACTCTAGTAGGGAGG.................................................................................... 21 1 1 18351.00 18351 290 7011 5997 127 44 43 1279 905 1143 13 290 16 166 10 6 127 103 5 55 1 43 14 8 21 38 10 1 14 23 7 2 96 3 63 4 11 8 116 4 17 14 15 6 0 0 1 0 0 16 2 16 0 5 1 30 0 0 15 0 6 1 4 7 2 4 3 0 1 0 2 0 15 0 0 0 0 0 0 1 3 2 0 0 0 2 0 0 3 0 0 0 0 3 0 3 0 0 2 0 1 0 0 0 1 1 0 0 7 0 0 0 1 0 2 4 0 0 0 0 0 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 3 1 0 0 0 0 1 0 0 0 0 0 0 0 2 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AATTGACTCTAGTAGGGAGT.................................................................................... 20 0 1 17523.00 17523 5747 1383 1706 486 477 525 343 307 367 347 154 314 188 253 731 107 581 133 139 187 114 23 334 41 40 26 200 212 19 7 289 33 206 134 34 29 16 56 6 6 15 14 18 3 12 12 48 18 80 62 8 14 12 7 57 1 0 8 36 17 9 28 9 24 97 10 32 61 2 4 27 11 45 8 4 3 0 0 38 1 0 12 5 8 7 16 0 4 7 1 5 6 5 6 2 24 7 3 35 7 32 3 1 4 0 0 2 8 0 8 0 3 1 2 14 2 1 1 4 0 2 1 3 1 1 16 1 5 0 5 0 0 0 0 2 1 13 2 1 0 5 2 0 2 0 9 0 1 0 8 0 2 0 0 0 0 0 3 1 1 1 1 0 0 5 0 0 2 1 1 0 1 0 0 0 0 0 0 0 1 0 3 0 0 0 0 0 2 0 0 0 0 0 0 1 5 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAATTGACTCTAGTAGGGT...................................................................................... 19 1 1 17163.00 17163 11850 430 675 715 307 689 233 296 443 88 40 105 78 140 35 18 11 97 196 19 0 0 25 9 46 73 3 9 3 31 27 12 5 9 20 3 13 6 13 0 15 3 0 0 0 2 0 0 2 0 23 3 0 0 1 1 0 0 50 0 0 0 1 3 0 3 0 11 5 1 37 136 13 0 0 0 0 1 2 0 0 0 0 31 1 1 0 0 0 1 0 0 1 7 0 0 0 0 0 1 0 9 1 0 0 0 1 0 11 0 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAATTGACTCTAGTAGGGAGTCA.................................................................................. 23 1 1 15321.00 15321 1188 1549 2206 965 98 78 611 519 517 69 149 42 221 50 10 195 10 29 196 4 89 145 2 144 148 428 3 16 1300 531 0 22 1 3 141 50 462 8 318 677 69 93 317 100 0 13 3 0 2 0 371 14 30 470 1 92 19 44 19 5 14 7 31 1 0 16 0 1 68 34 2 5 0 10 12 3 19 19 1 0 20 0 5 2 3 0 2 0 0 1 6 0 7 1 2 1 0 5 0 0 0 6 1 1 5 0 11 0 20 1 0 0 6 1 1 1 6 4 1 0 0 3 0 1 1 0 2 6 5 0 0 4 3 2 3 3 0 0 0 0 0 0 0 0 4 1 2 1 0 0 1 0 3 4 3 0 5 0 0 2 1 0 0 0 0 0 1 0 2 0 2 0 0 1 1 0 0 0 0 0 1 0 1 4 1 0 0 0 6 1 0 0 0 2 0 2 0 0 0 3 2 0 0 1 8 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................CTCCCTAACGGAGTCAGATTGA................................................ 22 0 1 13639.00 13639 17 39 121 58 2 0 24 15 59 1 3 1 10 0 1 6 42 2 46 0 26 35 0 11 3 2454 0 51 313 3112 1 0 1 14 20 3 568 0 2083 185 12 35 366 224 451 29 0 335 1 0 101 0 0 93 3 50 442 5 25 2 0 3 5 0 0 1 22 0 706 0 4 2 0 0 4 105 206 198 0 7 171 0 0 1 0 0 0 1 1 2 0 7 0 26 0 1 0 0 2 0 1 8 2 0 28 53 1 0 3 0 6 29 0 0 2 1 0 0 0 30 0 2 0 0 0 1 0 1 0 3 66 0 2 49 3 6 0 0 0 99 0 0 18 0 0 0 0 1 69 0 7 0 0 0 1 0 0 1 5 1 0 0 1 0 1 0 0 0 0 0 1 0 0 0 14 0 11 3 0 0 18 0 0 1 1 0 0 0 0 2 0 10 0 0 0 0 0 14 0 0 0 0 0 0 0 4 0 0 4 5 0 0 0 4 0 0 0 0 12 0 0 1 0 0 0 0 0 1 0 3 2 1 6 0 1 5 2 0 0 2 0 3 0 0 0 5 4 1 0 4 3 2 0 0 3 1 2 0 2 0 0 0 0 1 2 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................CAAATTGACTCTAGTAGGGAGT.................................................................................... 22 0 1 13095.00 13095 5638 595 304 344 367 340 219 256 314 186 45 183 24 201 210 11 58 95 102 41 13 16 36 29 25 60 117 21 6 82 86 9 45 27 15 16 99 19 91 0 23 4 17 8 83 9 1 16 15 1 18 0 0 1 10 1 23 4 667 1 0 0 1 15 25 2 586 7 3 5 412 74 29 0 1 6 4 0 9 0 1 5 1 201 0 0 0 1 186 3 0 0 2 1 0 0 1 1 0 0 2 71 3 1 11 2 0 4 7 2 58 7 0 0 1 1 1 0 0 1 1 2 5 0 0 1 0 4 0 1 1 1 0 1 1 2 2 1 2 0 0 0 2 0 1 0 1 0 2 0 4 0 0 0 0 0 0 1 14 0 0 0 22 0 0 0 1 0 1 0 0 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 3 0 1 0 0 0 0 0 0 0 0 0 1 0 0 2 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................AAATTGACTCTAGTAGGGAGTCT.................................................................................. 23 1 1 12984.00 12984 988 1848 2054 583 111 110 513 386 344 88 181 53 200 58 22 260 6 30 85 8 57 495 6 181 93 252 4 21 737 308 2 31 4 11 138 72 236 1 203 472 27 35 116 216 0 13 3 0 4 0 261 21 28 277 9 209 35 6 4 3 8 11 41 1 0 58 0 1 29 10 3 2 2 16 2 5 10 8 1 0 12 0 17 0 10 0 12 0 0 1 13 10 4 0 3 0 2 4 0 0 1 2 4 0 1 3 5 0 6 0 0 0 8 2 0 3 7 4 0 1 5 14 0 1 3 0 5 0 3 0 2 0 4 0 5 1 0 0 0 0 1 0 0 1 1 2 2 2 0 1 1 1 3 6 7 2 2 0 0 5 1 0 0 5 0 0 2 0 0 2 3 0 0 0 0 1 0 0 0 0 0 0 2 4 0 0 0 1 2 2 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 1 0 0 0 2 0 0 0 0 1 0 6 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAATTGACTCTAGTAGGGAGC.................................................................................... 21 1 1 7359.00 7359 859 2228 2045 147 143 133 191 168 171 78 151 73 136 56 28 136 37 46 34 30 27 7 21 13 10 9 12 21 20 5 4 36 12 32 9 8 4 15 2 7 9 7 3 1 0 6 1 0 32 2 2 3 12 2 10 2 0 17 0 1 3 3 2 1 9 3 0 3 1 0 2 0 2 4 0 0 0 0 0 0 0 0 3 1 1 2 4 1 0 2 2 0 6 2 2 0 1 0 1 0 0 0 0 1 0 0 1 4 0 0 0 2 0 4 0 0 0 2 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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.......................................................................................CTCACTAACGGAGTCAGATTG................................................. 21 1 1 101.00 101 6 3 2 10 2 0 12 9 20 0 0 0 0 1 0 1 1 0 3 1 2 0 0 0 2 4 0 0 2 2 0 0 0 1 0 0 2 0 1 1 0 2 4 0 0 0 0 0 0 0 3 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAATTGACACTAGTAGGGAGTC................................................................................... 22 1 1 101.00 101 5 15 7 4 1 0 7 5 8 0 12 1 3 0 1 1 0 0 0 1 0 4 0 2 0 1 0 0 1 4 0 0 1 0 1 0 4 1 1 0 0 0 1 2 0 0 1 0 0 0 3 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................AAATTGAGTCTAGTAGAGAGT.................................................................................... 21 2 1 101.00 101 0 3 1 3 0 0 20 19 16 0 13 0 13 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
dm3 chr3R:121041-121228 - dme-mir-929-as GAGTCTG------------GT----------------------------------------------------ATCTTAACAGCTAACACATTTTT--------A---A-----G-TGCTCCTCTGTTGTG-TCGCTCCTTTGCAGCTCAATCTGACTCCGTTAGGGAGTCGCTCATT-AAAGGACTCCCTACTAGAGTCAATTTGAGCTCCACCAGGAC--TGGT--------------T--CCGCCATGTCAGG--------------------GCATGGA-------------------------------------------------------T-TGCATACATGGATTTTTCACTGT-----------GA
droSec2 scaffold_6:240384-240571 - GGGTCTG------------GT----------------------------------------------------ATCTTAACGGCTAACACCTTTTT--------A---A-----G-TGCTCCTCTGTTGTC-TCGCTCCTTTGTAGCTCAATCTGACTCCGTTAGGGAGTCGCTCATT-AAAGGACTCCCTACTAGAGTCAATTTGAGCTTCACCAGGAC--TGGT--------------T--GCGCCATGTCAGG--------------------GCACGTA-------------------------------------------------------T-CACATATATGTCATTTTCACTGT-----------GA
droYak3 3R:481058-481244 - AGGTCTA------------GT----------------------------------------------------ATCTTAACGGCTAACACATTTTT--------TTTTA-----G-TGGTCCTGTGTTGTC-TCGCTCCTTTGTAGCTCAATCTGACTCCGTTAGGGAGTCGTTCATT-AAAGGACTCCCTACTAGAGTCAATTTGAGCTTCACCAGGAC--TGGT--------------T--TTGCCATTTCAAG--------------------GCACGTA------------------------------------------------------------ATGTATAGCGTTTTCACTGT-----------GA
droEre2 scaffold_4770:471000-471183 - AGGTCTG------------GT----------------------------------------------------ATCTTAACGGCTAACACCTTTTT--------A---A-----G-TGCACCTGTGTTGTC-TCGCTCCTTTGTAGCTCAATCTGACTCCGTTAGGGAGTCGCTTATG-GAAGGACTCCCTACTAGAGTCAATTTGAGCTTCACCAGGAC--TGGT--------------T--CCGCCACTTCAAG--------------------GCGCGTA------------------------------------------------------------ATGTATGGCTTTTTCACTGT-----------GA
droEug1 scf7180000409759:55695-55887 - TAGTGTA------------AT----------------------------------------------------TTCTAATTAGATAACACTTTTAA--------G---A-----ACTGCTCCTTTGTTGTT--TGCTCCTTTGAAATTCAATCTGACTCCGTTAGGGAGTCGCTCGATATAAGGACTCCCTACTAGAGTCAATTTGAACAGCGTCAGGAT--TTGT--------------TATCATCTATATCAGA--------------------T-AC------------------------------------------------AGGACTTA--T-T--TTATAGATCACATTCACGGT-----------AT
droBia1 scf7180000302098:364475-364663 + GAGTC-A------------TT----------------------------------------------------TTCTTATTGGCTAACACTTTTGG--------C---A-----GTTGCTCCTTTGTTGTC-TCGCTCCTTTGAAGTTCAATCTGACTCCGTTAGGGAGTCGCTCATTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGTCAGGACT-TAGT--------------T--CTGTTATGTCAAA--------------------GGACAAT--------------------------------------------AGGAAC-------------TTGGGTACATTCACTAT-----------AT
droTak1 scf7180000414441:35398-35588 + AG-TCTA------------TT----------------------------------------------------TTCTTATCAGCTAACACTTTTTA--------A---A-----GATTTCCCTTTGTTGTC-TTGGTCCTTTGTAGTTCAATCTGACTCCGTTAGGGAGTCGCTCATTGAAAGGACTCCCTACTAGAGTCAATTTGAGCTGCGCCAGGAAT-TGGT--------------T--CTCTTATGTCAGG--------------------GAACAAT-------------------------------------------------------A-GGTATGTAAGGCACATTCACTGT-----------AT
droEle1 scf7180000491104:1857431-1857589 - GGGTCTA------------CT----------------------------------------------------TTCTTATGGGCTAACACTTTCGG--------C---A-----GCTGCTC-CCCGATGTC-TTGCTCCTTCGAAGCTCAATCTGACTCCGTTAGGGAGTCGCTCGAGAAAAGGACTCCCTACTAGAGTCAATTTGAGCTGCGCCAGGAAG-TCCT--------------T--C-TC-GC---------------------------------------------------------------------------------------------------------TCCACGGT-----------TC
droRho1 scf7180000777910:14024-14197 + AG-TCTA------------CT----------------------------------------------------TTCTTATCGGCTAACACTTTTGG--------C---A-----GCTGCTCC-TTGTTGTC-TCTCTCCTTTGTAGATCAATCTGACTCCGTTAGGGAGTCGCTCATGAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGGCAGGAAG-TCGT--------------T--T-TC-GCG------------------------------TA------------------------------------------------------------ATGTAAGACTAATTCACAGT-----------AT
droFic1 scf7180000454096:1242518-1242680 - A------------------------------------------------------------------------TTCTTATCAGCTAGCACTT--GG--------C---A-----GCCGCTCCCTCGATGTC-TCGCTCCTTTGAAGTTCAATCTGACTCCGTTAGGGAGTCGCTCAAGAAAAGGACTCCCTACTAGAGTCAATTTGAGCTGCGTCAGGAAG-TCGT--------------T--C-TCAAAGTCGG----------------------CGCGT-----------------------------------------------------------------------TCTTCACTGT-----------AT
droKik1 scf7180000302634:767712-767890 - TGATCTG------------GC--TAA-----------------------------------------------TGCTTATCGCCTAACACTCTCTG--------G---A-----A-T-CT-CACTGTTGTC-TCTCTCCTTGGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCGTACAAAGGACTCCCTACTAGAGTCAATTTGAACTCCGACAGGAACATGGCGTTGCTCGGGTCACT--C-TCGATT-----------------------------------------------------------------------------------------T-------GGGCA--CTCAC---------------T
droAna3 scaffold_13340:11127658-11127873 - AGAT--A------------TT----------------------------------------------------ATCTTAGAGGCTAACACTTTTTA-----G-GC---C-----ACCACGTAGTCGTTGTC-TCGCTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCTCTCGTTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGCCAGGAAG-TGGT--------------T--G-GT-TGG-----TT------------------------GGTTGGTTGGTGGCTGGGGAAGCTGCATCTC---AGAACACTTTTCAGGACATT-----------------TTCTCACTTT-----------AT
droBip1 scf7180000396691:36342-36554 - GATT---------------TT----------------------------------------------------GTCTTAAAGGCTAACACTTTTTG-----G-GC---A-----ACCCCTTAGTCGTTGTC-TCGCTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCGTTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGCCAGGAAG-TGGT--------------T--G-GT-GGG-----TT------------------------GGT-------------GGAAGGCCGCATCTC---AGTACCCTTTTCAGGACATTT-----------TCTCAC------TTTATTCACTTTATGT
dp5 2:24810783-24810979 + GGGCACA-----------TTCATGTA-----------------------------------------------TTCTTAGCAACT-ACACTTCGGT--------TCTTTGTCT-TTCGCTCCACTGTTGTC-T-GTTCCTTGGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCAATAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCTGCAGGAAT-TGCC-----------------GTGC-ACTTCGGATCGGGCGCAT----------GCACC------------------------------TTCCACTAA------------------T---------------------CAC-----------AA
droPer2 scaffold_6:111437-111585 + T--------------------------------------------------------------------------------------------------------------------GCTCCACTGTTGTC-T-GTTCCTTGGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCAATAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCTGCAGGAAA-TCCC--------------G--T-GC-ACTTCGGATCGGGCGCAT----------GCACC------------------------------TTCCACAAA------------------T---------------------CAC-----------AA
droWil2 scf2_1100000004902:9825531-9825716 + AAG-GTA------------TT----------------------------------------------------TTCTTTAGGTCTAACACTTTGGT--------GGGTC-----GTGGCT-TTTTGTTGTTGTTGTTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCGCTTATATAAAGGACTCCCTACTAGAGTCAATTTGAACTGCCGCAGGAAG-TTCT--------------C--AAGCCACTTTAGATTATGCTTAT----------GCACTTA-------------------------------------------------------T------------------AACAAA-----------AA
droVir3 scaffold_12822:1418767-1418942 - G--TT-------------------------------------------------------------------------------TAACACTTTG-TCACTTG-GC---A-----CATTTTTACTCGTTGTC-TGGGTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCGTG-AAAGGACTCCCTACTAGAGTCAATTTGAACTGCGGCAGGAAT-TCAC-----------------GCGT----------------CG-CACTTGGCCTGGATC------------------------------TTAATCGAA------------------T-CGCAT---TGA-AT--------T-----------TT
droMoj3 scaffold_6540:34020243-34020499 - AAA-CTAAAAATGTAACGAACGTGTATTCAGTTATATTAACCACTGTAAATTGGATTCACTTATTAATTTTTTATTCCACTGTATACCATTATTTGCATTTGTGC---T----CG-CGCTTCTTCGTTGTC-TGGGTCCTCTGAAATTCAATCTGACTCCGTTAGGGAGTCGTTAAAAAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCATGAGGAAA-CTCG--------------T--A-GC-GTATATGTAT------------------GTATGTA-------------------------------------------------------TATATATATATATCTTTT------T-----------TT
droGri2 scaffold_15074:2468141-2468331 + GCAT---------------TT----------------------------------------------------ATCATTATTTGTAACACTTGTAT--------C---A-----C-TGGGGCATTGTTGAC-TTGGTCCTTTGTAACTCAATCTGACTCCGTTAGGGAGTCGCTCGTTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCAGCAGGAAG-TTCG-------------------GG--------------GGCA------------CACT------------------------------TT---CAAATAACATTGAGGACATTGTT-T-------GAGGA--CACAACAA-----------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GGGTCTG------------GT----------------------------------------------------ATCTTAACGGCTAACACCTTTTT--------A---A-----G-TGCTCCTCTGTTGTC-TCGCTCCTTTGTAGCTCAATCTGACTCCGTTAGGGAGTCGCTCATT-AAAGGACTCCCTACTAGAGTCAATTTGAGCTTCACCAGGAC--TGGT--------------T--GCGCCATGTCAGG--------------------GCACGTA-------------------------------------------------------T-CACATATATGTCATTTTCACTGT-----------GASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGGTCTA------------GT----------------------------------------------------ATCTTAACGGCTAACACATTTTT--------TTTTA-----G-TGGTCCTGTGTTGTC-TCGCTCCTTTGTAGCTCAATCTGACTCCGTTAGGGAGTCGTTCATT-AAAGGACTCCCTACTAGAGTCAATTTGAGCTTCACCAGGAC--TGGT--------------T--TTGCCATTTCAAG--------------------GCACGTA------------------------------------------------------------ATGTATAGCGTTTTCACTGT-----------GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body
.....................................................................................................................................................AATCTGACTCCGTTAGGGAGTC.............................................................................................................................................................................................................2213.0030201000
.........................................................................................................................................................................................CTCCCTACTAGAGTCAATTTGA.........................................................................................................................................................................2212.0020200000
.....................................................................................................................................................AATCTGACTCCGTTAGGGAGT..............................................................................................................................................................................................................2112.0020101000
droEre2
AGGTCTG------------GT----------------------------------------------------ATCTTAACGGCTAACACCTTTTT--------A---A-----G-TGCACCTGTGTTGTC-TCGCTCCTTTGTAGCTCAATCTGACTCCGTTAGGGAGTCGCTTATG-GAAGGACTCCCTACTAGAGTCAATTTGAGCTTCACCAGGAC--TGGT--------------T--CCGCCACTTCAAG--------------------GCGCGTA------------------------------------------------------------ATGTATGGCTTTTTCACTGT-----------GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		M060
Embryo		V040
Embryo		V107
Male-body		V108
Head
No Reads
droEug1
TAGTGTA------------AT----------------------------------------------------TTCTAATTAGATAACACTTTTAA--------G---A-----ACTGCTCCTTTGTTGTT--TGCTCCTTTGAAATTCAATCTGACTCCGTTAGGGAGTCGCTCGATATAAGGACTCCCTACTAGAGTCAATTTGAACAGCGTCAGGAT--TTGT--------------TATCATCTATATCAGA--------------------T-AC------------------------------------------------AGGACTTA--T-T--TTATAGATCACATTCACGGT-----------ATSizeHit CountTotal NormTotal
No Reads
droBia1
GAGTC-A------------TT----------------------------------------------------TTCTTATTGGCTAACACTTTTGG--------C---A-----GTTGCTCCTTTGTTGTC-TCGCTCCTTTGAAGTTCAATCTGACTCCGTTAGGGAGTCGCTCATTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGTCAGGACT-TAGT--------------T--CTGTTATGTCAAA--------------------GGACAAT--------------------------------------------AGGAAC-------------TTGGGTACATTCACTAT-----------ATSizeHit CountTotal NormTotal
No Reads
droTak1
AG-TCTA------------TT----------------------------------------------------TTCTTATCAGCTAACACTTTTTA--------A---A-----GATTTCCCTTTGTTGTC-TTGGTCCTTTGTAGTTCAATCTGACTCCGTTAGGGAGTCGCTCATTGAAAGGACTCCCTACTAGAGTCAATTTGAGCTGCGCCAGGAAT-TGGT--------------T--CTCTTATGTCAGG--------------------GAACAAT-------------------------------------------------------A-GGTATGTAAGGCACATTCACTGT-----------ATSizeHit CountTotal NormTotal
No Reads
droEle1
GGGTCTA------------CT----------------------------------------------------TTCTTATGGGCTAACACTTTCGG--------C---A-----GCTGCTC-CCCGATGTC-TTGCTCCTTCGAAGCTCAATCTGACTCCGTTAGGGAGTCGCTCGAGAAAAGGACTCCCTACTAGAGTCAATTTGAGCTGCGCCAGGAAG-TCCT--------------T--C-TC-GC---------------------------------------------------------------------------------------------------------TCCACGGT-----------TCSizeHit CountTotal NormTotal
No Reads
droRho1
AG-TCTA------------CT----------------------------------------------------TTCTTATCGGCTAACACTTTTGG--------C---A-----GCTGCTCC-TTGTTGTC-TCTCTCCTTTGTAGATCAATCTGACTCCGTTAGGGAGTCGCTCATGAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGGCAGGAAG-TCGT--------------T--T-TC-GCG------------------------------TA------------------------------------------------------------ATGTAAGACTAATTCACAGT-----------ATSizeHit CountTotal NormTotal
No Reads
droFic1
A------------------------------------------------------------------------TTCTTATCAGCTAGCACTT--GG--------C---A-----GCCGCTCCCTCGATGTC-TCGCTCCTTTGAAGTTCAATCTGACTCCGTTAGGGAGTCGCTCAAGAAAAGGACTCCCTACTAGAGTCAATTTGAGCTGCGTCAGGAAG-TCGT--------------T--C-TCAAAGTCGG----------------------CGCGT-----------------------------------------------------------------------TCTTCACTGT-----------ATSizeHit CountTotal NormTotal
No Reads
droKik1
TGATCTG------------GC--TAA-----------------------------------------------TGCTTATCGCCTAACACTCTCTG--------G---A-----A-T-CT-CACTGTTGTC-TCTCTCCTTGGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCGTACAAAGGACTCCCTACTAGAGTCAATTTGAACTCCGACAGGAACATGGCGTTGCTCGGGTCACT--C-TCGATT-----------------------------------------------------------------------------------------T-------GGGCA--CTCAC---------------TSizeHit CountTotal NormTotal
No Reads
droAna3
AGAT--A------------TT----------------------------------------------------ATCTTAGAGGCTAACACTTTTTA-----G-GC---C-----ACCACGTAGTCGTTGTC-TCGCTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCTCTCGTTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGCCAGGAAG-TGGT--------------T--G-GT-TGG-----TT------------------------GGTTGGTTGGTGGCTGGGGAAGCTGCATCTC---AGAACACTTTTCAGGACATT-----------------TTCTCACTTT-----------ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................T-TGG-----TT------------------------GGTTGGTTGGTGG.................................................................................1990.111000001
.................................................................................................................................................................................................................................T--------------T--G-GT-TGG-----TT------------------------GGTTGGTTG.....................................................................................19630.053000003
...............................................................................................................................................................................................................................GGT--------------T--G-GT-TGG-----TT------------------------GGTTGGTTG.....................................................................................21340.031000001
................................................................................................................................................................................................................................GT--------------T--G-GT-TGG-----TT------------------------GGTTGGTTG.....................................................................................20440.021000001
.................................................................................................................................................................................................................................T--------------T--G-GT-TGG-----TT------------------------GGTTGGTTGG....................................................................................20460.021000001
...................................................................................................................................................................................................................................................G-GT-TGG-----TT------------------------GGTTGGTTGG....................................................................................18920.022000101
...............................................................................................................................................................................................................................GGT--------------T--G-GT-TGG-----TT------------------------GGTTGG........................................................................................18920.022000101
droBip1
GATT---------------TT----------------------------------------------------GTCTTAAAGGCTAACACTTTTTG-----G-GC---A-----ACCCCTTAGTCGTTGTC-TCGCTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCGTTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCGCCAGGAAG-TGGT--------------T--G-GT-GGG-----TT------------------------GGT-------------GGAAGGCCGCATCTC---AGTACCCTTTTCAGGACATTT-----------TCTCAC------TTTATTCACTTTATGTSizeHit CountTotal NormTotal
No Reads
dp5
GGGCACA-----------TTCATGTA-----------------------------------------------TTCTTAGCAACT-ACACTTCGGT--------TCTTTGTCT-TTCGCTCCACTGTTGTC-T-GTTCCTTGGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCAATAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCTGCAGGAAT-TGCC-----------------GTGC-ACTTCGGATCGGGCGCAT----------GCACC------------------------------TTCCACTAA------------------T---------------------CAC-----------AASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
T--------------------------------------------------------------------------------------------------------------------GCTCCACTGTTGTC-T-GTTCCTTGGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCAATAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCTGCAGGAAA-TCCC--------------G--T-GC-ACTTCGGATCGGGCGCAT----------GCACC------------------------------TTCCACAAA------------------T---------------------CAC-----------AASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAG-GTA------------TT----------------------------------------------------TTCTTTAGGTCTAACACTTTGGT--------GGGTC-----GTGGCT-TTTTGTTGTTGTTGTTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCGCTTATATAAAGGACTCCCTACTAGAGTCAATTTGAACTGCCGCAGGAAG-TTCT--------------C--AAGCCACTTTAGATTATGCTTAT----------GCACTTA-------------------------------------------------------T------------------AACAAA-----------AASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
G--TT-------------------------------------------------------------------------------TAACACTTTG-TCACTTG-GC---A-----CATTTTTACTCGTTGTC-TGGGTCCTTTGTAATTCAATCTGACTCCGTTAGGGAGTCGCTCGTG-AAAGGACTCCCTACTAGAGTCAATTTGAACTGCGGCAGGAAT-TCAC-----------------GCGT----------------CG-CACTTGGCCTGGATC------------------------------TTAATCGAA------------------T-CGCAT---TGA-AT--------T-----------TTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
...............................................................................................................................................................................................................................................................................GGCCTGGATC------------------------------TTAATCGAA------------------T-CGCAT---............................2511.00100000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................AATCTGACTCCGTTAGGGAGT..............................................................................................................................................................................................................2111.00100000000000000000000001000000000000000000000000000000000000000
droMoj3
AAA-CTAAAAATGTAACGAACGTGTATTCAGTTATATTAACCACTGTAAATTGGATTCACTTATTAATTTTTTATTCCACTGTATACCATTATTTGCATTTGTGC---T----CG-CGCTTCTTCGTTGTC-TGGGTCCTCTGAAATTCAATCTGACTCCGTTAGGGAGTCGTTAAAAAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCATGAGGAAA-CTCG--------------T--A-GC-GTATATGTAT------------------GTATGTA-------------------------------------------------------TATATATATATATCTTTT------T-----------TTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		V060
Head		V110
Male-body
.........................................................................................................................................................................................................................................................TATATGTAT------------------GTATGTA-------------------------------------------------------TAT...................................191000.022200000
droGri2
GCAT---------------TT----------------------------------------------------ATCATTATTTGTAACACTTGTAT--------C---A-----C-TGGGGCATTGTTGAC-TTGGTCCTTTGTAACTCAATCTGACTCCGTTAGGGAGTCGCTCGTTAAAAGGACTCCCTACTAGAGTCAATTTGAACTGCAGCAGGAAG-TTCG-------------------GG--------------GGCA------------CACT------------------------------TT---CAAATAACATTGAGGACATTGTT-T-------GAGGA--CACAACAA-----------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 07/30/2014 at 06:04 PM